Running as unit: rb-build-arm64_11-81288.service ==================================================================================== Tue Jan 21 22:18:14 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_11) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Tue Jan 21 22:18:14 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-JPoIsEcb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 22:18:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Jan 21 22:18:15 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9H5PXd' Tue Jan 21 22:18:15 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Jan 21 22:18:15 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-y5RCKt' ok, let's check if mapsembler2 is building anywhere yet… ok, mapsembler2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of mapsembler2 in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Tue Jan 21 22:18:29 UTC 2025 I: starting to build mapsembler2/unstable/arm64 on jenkins on '2025-01-21 22:18' Tue Jan 21 22:18:29 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/81288/console.log 1737497909 arm64 unstable mapsembler2 Tue Jan 21 22:18:29 UTC 2025 I: Downloading source for unstable/mapsembler2=2.2.4+dfsg1-4 --2025-01-21 22:18:30-- http://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2265 (2.2K) [text/prs.lines.tag] Saving to: ‘mapsembler2_2.2.4+dfsg1-4.dsc’ 0K .. 100% 299M=0s 2025-01-21 22:18:30 (299 MB/s) - ‘mapsembler2_2.2.4+dfsg1-4.dsc’ saved [2265/2265] --2025-01-21 22:18:30-- http://deb.debian.org/debian/pool/main/m/mapsembler2/mapsembler2_2.2.4%2bdfsg1-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2265 (2.2K) [text/prs.lines.tag] Saving to: ‘mapsembler2_2.2.4+dfsg1-4.dsc’ 0K .. 100% 299M=0s 2025-01-21 22:18:30 (299 MB/s) - ‘mapsembler2_2.2.4+dfsg1-4.dsc’ saved [2265/2265] Tue Jan 21 22:18:30 UTC 2025 I: mapsembler2_2.2.4+dfsg1-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mapsembler2 Binary: mapsembler2 Architecture: amd64 arm64 kfreebsd-amd64 ppc64el s390x Version: 2.2.4+dfsg1-4 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Étienne Mollier Homepage: http://colibread.inria.fr/mapsembler2/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mapsembler2 Vcs-Git: https://salsa.debian.org/med-team/mapsembler2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev Package-List: mapsembler2 deb science optional arch=amd64,arm64,kfreebsd-amd64,ppc64el,s390x Checksums-Sha1: a9219b84bbe33544c2c239e148d2df5cd3593ba3 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 34ee1b7875f7a387b82d5722e02250c03abacabb 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Checksums-Sha256: 44b215f922ed34c3a167eb512012792e7d777df17d3dda6a2c4a5a0959e8b824 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz e24f25f87d54b83d0685c102f8f71d694771e696372484835fb827fdc6b21246 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz Files: 5c9add3cf5d9cfbd1c340efe580408e2 1369588 mapsembler2_2.2.4+dfsg1.orig.tar.xz 79133654b404d6857bfc0a5c117242d1 24464 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmEfaZkUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdp1RA/8CcQNm9Rt2n36IFvhbeN3yhIpNriR xBi4sVJkdTLb+7ho9T0/w7oCa/eKNzsFftal8xvlUeFBHdl1kiweFrEfg9s9fLPn f+yOmcHwKxIu5dBAGINz/xekJcATMH54hoDzoMo0VkvydkdPNxz587oyVTQDb9P2 4FmADNf6O6c2yTASy6nRh4/EYPmalzV3GK2yOedU+rloKwY6SpxqgrGrECTsH5yd /aHPuQrWSX0LzvHWgH+ra1bHZZHDQZGHmJkrB2lPHX+2JYFnICB1m84NQWTSSiIZ mxJXL1hX/bxnRg8QUSTwaf13rz0A4cccwBrGuXNb9v6R7ehA6RdYoRDnHP0Jd1OS eT0sSQQ4WQr/+awstq/5TRlFGdVWmu7wSNqHeLRJARtR9Mms04J+N6aOJpgzUt7T 2fQafMWGN6oscwYpX5AMZOaVaNeMSK3nBcYrXOMHe0I6/pKEjD46zzhCRwVrz+ar LJNVN8lFcNvnZ7KsGUcuYI/izkNlDyxgkYC6zwC5/cKNkuRcvgcV7TlU7WYlkuL3 32KnoYpZBIHH/HXAm5ChYNxwyQ0r6PLGT62HaKthOXYOYvkuUasmwpOsW8rQ6H3y qmlH90ggdGFtnRH/bAhuwERZZ0efOPVrjkd6J5f5aE+SUNn19kyPCq86pXRZrniW A31QqU7zRJANEEU= =qNGY -----END PGP SIGNATURE----- Tue Jan 21 22:18:30 UTC 2025 I: Checking whether the package is not for us Tue Jan 21 22:18:30 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Jan 21 22:18:30 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Jan 21 22:18:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Jan 21 22:18:30 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-5f9vg0' ==================================================================================== Tue Jan 21 22:18:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 mapsembler2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW 2.2.4+dfsg1-4" as arguments. Tue Jan 21 22:18:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-MASwe8Ou" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 22:18:31 UTC 2025 I: Downloading source for unstable/mapsembler2=2.2.4+dfsg1-4 Reading package lists... NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mapsembler2.git Please use: git clone https://salsa.debian.org/med-team/mapsembler2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1396 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (dsc) [2265 B] Get:2 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (tar) [1370 kB] Get:3 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (diff) [24.5 kB] Fetched 1396 kB in 1s (2722 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mapsembler2.git Please use: git clone https://salsa.debian.org/med-team/mapsembler2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1396 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (dsc) [2265 B] Get:2 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (tar) [1370 kB] Get:3 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (diff) [24.5 kB] Fetched 1396 kB in 1s (2722 kB/s) Download complete and in download only mode ============================================================================= Building mapsembler2 in unstable on arm64 on codethink04-arm64 now. Date: Tue Jan 21 22:18:32 GMT 2025 Date UTC: Tue Jan 21 22:18:32 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 10:18:33 -12 2025 I: pbuilder-time-stamp: 1737497913 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapsembler2_2.2.4+dfsg1-4.dsc] I: copying [./mapsembler2_2.2.4+dfsg1.orig.tar.xz] I: copying [./mapsembler2_2.2.4+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mapsembler2_2.2.4+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c8916a9e2ceb453dada8eb7ceb512fbc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2623562' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_kBuw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1 --logfile b1/build.log mapsembler2_2.2.4+dfsg1-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 67.1 MB of archives. After unpacking 382 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 75 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b2 [141 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libcppunit-dev arm64 1.15.1-4+b2 [202 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.11.1-1+b1 [449 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Fetched 67.1 MB in 1s (102 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../018-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package bc. Preparing to unpack .../019-bc_1.07.1-4+b1_arm64.deb ... Unpacking bc (1.07.1-4+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../020-cmake-data_3.31.4-2_all.deb ... Unpacking cmake-data (3.31.4-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../021-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../022-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../023-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../024-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../025-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../026-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../027-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../028-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../029-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../030-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../031-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../032-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../033-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../034-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../035-libldap2_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../036-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../037-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../038-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../039-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../040-libtasn1-6_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../041-libgnutls30t64_3.8.8-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.8-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../042-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../043-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../044-libcurl4t64_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../045-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../046-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../047-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../048-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../049-cmake_3.31.4-2_arm64.deb ... Unpacking cmake (3.31.4-2) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../050-comerr-dev_2.1-1.47.2-1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../051-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../052-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../053-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../057-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../058-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../059-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../062-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../063-hdf5-helpers_1.14.5+repack-3_arm64.deb ... Unpacking hdf5-helpers (1.14.5+repack-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../064-libgssrpc4t64_1.21.3-4_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../065-libkadm5clnt-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../066-libkdb5-10t64_1.21.3-4_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../067-libkadm5srv-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../068-krb5-multidev_1.21.3-4_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-4) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../069-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../070-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../071-libaec-dev_1.1.3-1+b1_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../072-libboost1.83-dev_1.83.0-4_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-4) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../073-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../074-libbrotli-dev_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libcppunit-1.15-0:arm64. Preparing to unpack .../075-libcppunit-1.15-0_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libcppunit-dev:arm64. Preparing to unpack .../076-libcppunit-dev_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-dev:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../077-libidn2-dev_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libkrb5-dev:arm64. Preparing to unpack .../078-libkrb5-dev_1.21.3-4_arm64.deb ... Unpacking libkrb5-dev:arm64 (1.21.3-4) ... Selecting previously unselected package libldap-dev:arm64. Preparing to unpack .../079-libldap-dev_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap-dev:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../080-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../081-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../082-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:arm64. Preparing to unpack .../083-libnghttp2-dev_1.64.0-1_arm64.deb ... Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../084-libpsl-dev_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../085-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../086-libgmp-dev_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../087-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../088-libunbound8_1.22.0-1+b1_arm64.deb ... Unpacking libunbound8:arm64 (1.22.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../089-libgnutls-dane0t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../090-libgnutls-openssl27t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.8-2) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../091-libp11-kit-dev_0.25.5-3_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../092-libtasn1-6-dev_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Selecting previously unselected package nettle-dev:arm64. Preparing to unpack .../093-nettle-dev_3.10-1+b1_arm64.deb ... Unpacking nettle-dev:arm64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:arm64. Preparing to unpack .../094-libgnutls28-dev_3.8.8-2_arm64.deb ... Unpacking libgnutls28-dev:arm64 (3.8.8-2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../095-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../096-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:arm64. Preparing to unpack .../097-libssl-dev_3.4.0-2_arm64.deb ... Unpacking libssl-dev:arm64 (3.4.0-2) ... Selecting previously unselected package libssh2-1-dev:arm64. Preparing to unpack .../098-libssh2-1-dev_1.11.1-1_arm64.deb ... Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:arm64. Preparing to unpack .../099-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... Selecting previously unselected package libcurl4-openssl-dev:arm64. Preparing to unpack .../100-libcurl4-openssl-dev_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../101-libgfortran5_14.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-14) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../102-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-cpp-310:arm64. Preparing to unpack .../103-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-fortran-310:arm64. Preparing to unpack .../104-libhdf5-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-310:arm64. Preparing to unpack .../105-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-fortran-310:arm64. Preparing to unpack .../106-libhdf5-hl-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-cpp-310:arm64. Preparing to unpack .../107-libhdf5-hl-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../108-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../109-libjpeg62-turbo-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../110-libjpeg-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../111-libhdf5-dev_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-dev (1.14.5+repack-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-1) ... Setting up hdf5-helpers (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:arm64 (1.22.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up comerr-dev:arm64 (2.1-1.47.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libssl-dev:arm64 (3.4.0-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libtasn1-6:arm64 (4.19.0-3+b3) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libcppunit-dev:arm64 (1.15.1-4+b2) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.5.4-2) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up debhelper (13.24.1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up cmake (3.31.4-2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapsembler2_2.2.4+dfsg1-4_source.changes dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at cmake/FindTR1.cmake:10 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): CMakeLists.txt:26 (include) -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' CMake Deprecation Warning at thirdparty/gatb-core/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- CMake Deprecation Warning at thirdparty/gatb-core/thirdparty/emphf/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:29 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done (7.4s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 20%] Built target emphf_copyasis [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const std::string&, const int64_t&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'long int' [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbgh5.dir/link.d CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/mapsembler2_extremities.dir/link.d CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:51: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)': ../minia/Terminator.cpp:275:105: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:38: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)': ../minia/Utils.cpp:434:100: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:167:85: required from here 167 | template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); | ^ ../minia/Utils.cpp:121:53: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:970, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:127:22: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void bloom_pass_reads_binary(T*, BloomCpt*, char*) [with T = Bloom]' at ../minia/Utils.cpp:84:29, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:151:32: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:148:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void end_kmer_count_partition(bool, Hash16*)' at ../minia/Utils.cpp:196:91: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:970, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'void sorting_count(Bank*, char*, int, int, bool, int, bool)' at ../minia/SortingCount.cpp:45:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Debloom.cpp: In function 'int debloom(int, int)': ../minia/Debloom.cpp:154:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function 'Set* load_false_positives()': ../minia/Debloom.cpp:280:112: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:50: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function 'void print_size_summary(FPSetCascading4*)': ../minia/Debloom.cpp:465:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ mapsembler_extend.cpp: In function 'int main(int, char**)': mapsembler_extend.cpp:145:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'int64_t' {aka 'long int'} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function 'void DBG::index_nodes()': DeBruijnGraph.cpp:952:41: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:10: note: in expansion of macro 'LOAD_AND_RETURN' 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:10: note: in expansion of macro 'LOAD_AND_RETURN' 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:10: note: in expansion of macro 'READ_UL' 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/interface_libchash.cpp: In function 'void iterate_and_fill_offsets(hash_t)': read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadMapper.cpp: In function 'uint64_t map_reads(Bank*, std::vector)': ReadMapper.cpp:38:31: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function 'HashFind': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN' 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFindLast': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN' 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFirstBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:10: note: in expansion of macro 'LOAD_AND_RETURN' 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashNextBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:10: note: in expansion of macro 'LOAD_AND_RETURN' 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashDoLoad': src/libchash.c:1407:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro 'READ_UL' 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro 'READ_UL' 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro 'READ_UL' 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro 'READ_UL' 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro 'READ_UL' 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function 'SparseRead': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro 'READ_UL' 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:10: note: in expansion of macro 'READ_UL' 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mapsembler2/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4_arm64.deb'. dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo dpkg-genchanges --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2623562 and its subdirectories I: Current time: Tue Jan 21 10:22:38 -12 2025 I: pbuilder-time-stamp: 1737498158 Tue Jan 21 22:22:38 UTC 2025 I: Signing ./b1/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo as mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc Tue Jan 21 22:22:38 UTC 2025 I: Signed ./b1/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo as ./b1/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc Tue Jan 21 22:22:38 UTC 2025 - build #1 for mapsembler2/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Tue Jan 21 22:22:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-MASwe8Ou, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:18 b2 -rw-r--r-- 1 jenkins jenkins 2265 Aug 20 2021 mapsembler2_2.2.4+dfsg1-4.dsc -rw------- 1 jenkins jenkins 3435 Jan 21 22:18 rbuildlog.w4WLQ62 /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1: total 3528 -rw-r--r-- 1 jenkins jenkins 356967 Jan 21 22:22 build.log -rw-r--r-- 1 jenkins jenkins 2484108 Jan 21 22:22 mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 24464 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2265 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4.dsc -rw-r--r-- 1 jenkins jenkins 7702 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8584 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1903 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 707172 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1758 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2: total 0 Tue Jan 21 22:22:39 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 10:18:33 -12 2025 I: pbuilder-time-stamp: 1737497913 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapsembler2_2.2.4+dfsg1-4.dsc] I: copying [./mapsembler2_2.2.4+dfsg1.orig.tar.xz] I: copying [./mapsembler2_2.2.4+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mapsembler2_2.2.4+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='c8916a9e2ceb453dada8eb7ceb512fbc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2623562' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_kBuw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1 --logfile b1/build.log mapsembler2_2.2.4+dfsg1-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 67.1 MB of archives. After unpacking 382 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 75 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b2 [141 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libcppunit-dev arm64 1.15.1-4+b2 [202 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.11.1-1+b1 [449 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Fetched 67.1 MB in 1s (102 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../018-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package bc. Preparing to unpack .../019-bc_1.07.1-4+b1_arm64.deb ... Unpacking bc (1.07.1-4+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../020-cmake-data_3.31.4-2_all.deb ... Unpacking cmake-data (3.31.4-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../021-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../022-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../023-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../024-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../025-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../026-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../027-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../028-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../029-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../030-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../031-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../032-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../033-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../034-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../035-libldap2_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../036-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../037-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../038-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../039-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../040-libtasn1-6_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../041-libgnutls30t64_3.8.8-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.8-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../042-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../043-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../044-libcurl4t64_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../045-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../046-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../047-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../048-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../049-cmake_3.31.4-2_arm64.deb ... Unpacking cmake (3.31.4-2) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../050-comerr-dev_2.1-1.47.2-1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../051-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../052-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../053-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../057-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../058-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../059-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../062-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../063-hdf5-helpers_1.14.5+repack-3_arm64.deb ... Unpacking hdf5-helpers (1.14.5+repack-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../064-libgssrpc4t64_1.21.3-4_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../065-libkadm5clnt-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../066-libkdb5-10t64_1.21.3-4_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../067-libkadm5srv-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../068-krb5-multidev_1.21.3-4_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-4) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../069-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../070-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../071-libaec-dev_1.1.3-1+b1_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../072-libboost1.83-dev_1.83.0-4_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-4) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../073-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../074-libbrotli-dev_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libcppunit-1.15-0:arm64. Preparing to unpack .../075-libcppunit-1.15-0_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libcppunit-dev:arm64. Preparing to unpack .../076-libcppunit-dev_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-dev:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../077-libidn2-dev_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libkrb5-dev:arm64. Preparing to unpack .../078-libkrb5-dev_1.21.3-4_arm64.deb ... Unpacking libkrb5-dev:arm64 (1.21.3-4) ... Selecting previously unselected package libldap-dev:arm64. Preparing to unpack .../079-libldap-dev_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap-dev:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../080-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../081-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../082-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:arm64. Preparing to unpack .../083-libnghttp2-dev_1.64.0-1_arm64.deb ... Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../084-libpsl-dev_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../085-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../086-libgmp-dev_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../087-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../088-libunbound8_1.22.0-1+b1_arm64.deb ... Unpacking libunbound8:arm64 (1.22.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../089-libgnutls-dane0t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../090-libgnutls-openssl27t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.8-2) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../091-libp11-kit-dev_0.25.5-3_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../092-libtasn1-6-dev_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Selecting previously unselected package nettle-dev:arm64. Preparing to unpack .../093-nettle-dev_3.10-1+b1_arm64.deb ... Unpacking nettle-dev:arm64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:arm64. Preparing to unpack .../094-libgnutls28-dev_3.8.8-2_arm64.deb ... Unpacking libgnutls28-dev:arm64 (3.8.8-2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../095-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../096-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:arm64. Preparing to unpack .../097-libssl-dev_3.4.0-2_arm64.deb ... Unpacking libssl-dev:arm64 (3.4.0-2) ... Selecting previously unselected package libssh2-1-dev:arm64. Preparing to unpack .../098-libssh2-1-dev_1.11.1-1_arm64.deb ... Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:arm64. Preparing to unpack .../099-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... Selecting previously unselected package libcurl4-openssl-dev:arm64. Preparing to unpack .../100-libcurl4-openssl-dev_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../101-libgfortran5_14.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-14) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../102-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-cpp-310:arm64. Preparing to unpack .../103-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-fortran-310:arm64. Preparing to unpack .../104-libhdf5-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-310:arm64. Preparing to unpack .../105-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-fortran-310:arm64. Preparing to unpack .../106-libhdf5-hl-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-cpp-310:arm64. Preparing to unpack .../107-libhdf5-hl-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../108-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../109-libjpeg62-turbo-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../110-libjpeg-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../111-libhdf5-dev_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-dev (1.14.5+repack-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-1) ... Setting up hdf5-helpers (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:arm64 (1.22.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up comerr-dev:arm64 (2.1-1.47.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libssl-dev:arm64 (3.4.0-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libtasn1-6:arm64 (4.19.0-3+b3) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libcppunit-dev:arm64 (1.15.1-4+b2) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.5.4-2) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up debhelper (13.24.1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up cmake (3.31.4-2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapsembler2_2.2.4+dfsg1-4_source.changes dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at cmake/FindTR1.cmake:10 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): CMakeLists.txt:26 (include) -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' CMake Deprecation Warning at thirdparty/gatb-core/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- CMake Deprecation Warning at thirdparty/gatb-core/thirdparty/emphf/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:29 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done (7.4s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done (0.2s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 20%] Built target emphf_copyasis [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const std::string&, const int64_t&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'long int' [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbgh5.dir/link.d CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/mapsembler2_extremities.dir/link.d CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:51: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)': ../minia/Terminator.cpp:275:105: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:38: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)': ../minia/Utils.cpp:434:100: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:167:85: required from here 167 | template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); | ^ ../minia/Utils.cpp:121:53: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:970, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:127:22: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void bloom_pass_reads_binary(T*, BloomCpt*, char*) [with T = Bloom]' at ../minia/Utils.cpp:84:29, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:151:32: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:148:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void end_kmer_count_partition(bool, Hash16*)' at ../minia/Utils.cpp:196:91: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:970, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'void sorting_count(Bank*, char*, int, int, bool, int, bool)' at ../minia/SortingCount.cpp:45:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Debloom.cpp: In function 'int debloom(int, int)': ../minia/Debloom.cpp:154:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function 'Set* load_false_positives()': ../minia/Debloom.cpp:280:112: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:50: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function 'void print_size_summary(FPSetCascading4*)': ../minia/Debloom.cpp:465:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ mapsembler_extend.cpp: In function 'int main(int, char**)': mapsembler_extend.cpp:145:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'int64_t' {aka 'long int'} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function 'void DBG::index_nodes()': DeBruijnGraph.cpp:952:41: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:10: note: in expansion of macro 'LOAD_AND_RETURN' 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:10: note: in expansion of macro 'LOAD_AND_RETURN' 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:10: note: in expansion of macro 'READ_UL' 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/interface_libchash.cpp: In function 'void iterate_and_fill_offsets(hash_t)': read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadMapper.cpp: In function 'uint64_t map_reads(Bank*, std::vector)': ReadMapper.cpp:38:31: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function 'HashFind': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN' 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFindLast': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN' 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFirstBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:10: note: in expansion of macro 'LOAD_AND_RETURN' 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashNextBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:10: note: in expansion of macro 'LOAD_AND_RETURN' 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashDoLoad': src/libchash.c:1407:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro 'READ_UL' 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro 'READ_UL' 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro 'READ_UL' 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro 'READ_UL' 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro 'READ_UL' 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function 'SparseRead': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro 'READ_UL' 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:10: note: in expansion of macro 'READ_UL' 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mapsembler2/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4_arm64.deb'. dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo dpkg-genchanges --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2623562 and its subdirectories I: Current time: Tue Jan 21 10:22:38 -12 2025 I: pbuilder-time-stamp: 1737498158 Tue Jan 21 22:22:40 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Jan 21 22:22:40 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Jan 21 22:22:40 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Jan 21 22:22:40 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-g0IYQZ' ==================================================================================== Tue Feb 24 04:45:41 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 mapsembler2 unstable /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW 2.2.4+dfsg1-4" as arguments. Tue Feb 24 04:45:41 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-jqDcY3WP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Feb 24 04:45:41 UTC 2026 I: Downloading source for unstable/mapsembler2=2.2.4+dfsg1-4 Reading package lists... NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mapsembler2.git Please use: git clone https://salsa.debian.org/med-team/mapsembler2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1396 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (dsc) [2265 B] Get:2 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (tar) [1370 kB] Get:3 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (diff) [24.5 kB] Fetched 1396 kB in 0s (46.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mapsembler2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mapsembler2.git Please use: git clone https://salsa.debian.org/med-team/mapsembler2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1396 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (dsc) [2265 B] Get:2 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (tar) [1370 kB] Get:3 http://deb.debian.org/debian unstable/main mapsembler2 2.2.4+dfsg1-4 (diff) [24.5 kB] Fetched 1396 kB in 0s (46.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building mapsembler2 in unstable on arm64 on codethink03-arm64 now. Date: Tue Feb 24 04:45:41 GMT 2026 Date UTC: Tue Feb 24 04:45:41 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_BdQC + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' mapsembler2 = debian-installer -o mapsembler2 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' mapsembler2 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_BdQC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2 --logfile b2/build.log mapsembler2_2.2.4+dfsg1-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 18:45:41 +14 2026 I: pbuilder-time-stamp: 1771908341 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mapsembler2_2.2.4+dfsg1-4.dsc] I: copying [./mapsembler2_2.2.4+dfsg1.orig.tar.xz] I: copying [./mapsembler2_2.2.4+dfsg1-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./mapsembler2_2.2.4+dfsg1-4.dsc: unsupported subcommand dpkg-source: info: extracting mapsembler2 in mapsembler2-2.2.4+dfsg1 dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1.orig.tar.xz dpkg-source: info: unpacking mapsembler2_2.2.4+dfsg1-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_libs dpkg-source: info: applying run_pipeline dpkg-source: info: applying add_hardening dpkg-source: info: applying skip_mphe dpkg-source: info: applying gcc-5.patch dpkg-source: info: applying libgomp.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying no_std_hash_redefinition.patch dpkg-source: info: applying gcc10.patch dpkg-source: info: applying check_memory.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 24 04:45 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=3ba08647c559473fb3fc80db5260c2d5 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=4190082 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_BdQC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2 --logfile b2/build.log mapsembler2_2.2.4+dfsg1-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, bc, zlib1g-dev, libhdf5-dev, libcppunit-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on bc; however: Package bc is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libhdf5-dev; however: Package libhdf5-dev is not installed. pbuilder-satisfydepends-dummy depends on libcppunit-dev; however: Package libcppunit-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bc{a} bsdextrautils{a} cmake{a} cmake-data{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} hdf5-helpers{a} intltool-debian{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libcom-err2{a} libcppunit-1.15-0{a} libcppunit-dev{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libevent-2.1-7t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgfortran5{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhdf5-310{a} libhdf5-cpp-310{a} libhdf5-dev{a} libhdf5-fortran-310{a} libhdf5-hl-310{a} libhdf5-hl-cpp-310{a} libhdf5-hl-fortran-310{a} libicu72{a} libidn2-0{a} libidn2-dev{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjsoncpp26{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl-dev{a} libpsl5t64{a} libreadline8t64{a} librhash1{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsz2{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libuv1t64{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} readline-common{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 67.1 MB of archives. After unpacking 382 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 bc arm64 1.07.1-4+b1 [101 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 30 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 comerr-dev arm64 2.1-1.47.2-1 [55.9 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 hdf5-helpers arm64 1.14.5+repack-3 [26.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libgssrpc4t64 arm64 1.21.3-4 [56.9 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libkadm5clnt-mit12 arm64 1.21.3-4 [41.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libkdb5-10t64 arm64 1.21.3-4 [41.0 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libkadm5srv-mit12 arm64 1.21.3-4 [53.1 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 krb5-multidev arm64 1.21.3-4 [126 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 75 http://deb.debian.org/debian unstable/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libcppunit-1.15-0 arm64 1.15.1-4+b2 [141 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libcppunit-dev arm64 1.15.1-4+b2 [202 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 79 http://deb.debian.org/debian unstable/main arm64 libkrb5-dev arm64 1.21.3-4 [15.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 libldap-dev arm64 2.6.9+dfsg-1 [305 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-3 [329 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-3 [621 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 libunbound8 arm64 1.22.0-1+b1 [553 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 libp11-kit-dev arm64 0.25.5-3 [208 kB] Get: 93 http://deb.debian.org/debian unstable/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 libssl-dev arm64 3.4.0-2 [3234 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 libzstd-dev arm64 1.5.6+dfsg-2 [329 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 libcurl4-openssl-dev arm64 8.11.1-1+b1 [449 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 libgfortran5 arm64 14.2.0-14 [361 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 libhdf5-310 arm64 1.14.5+repack-3 [1155 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libhdf5-cpp-310 arm64 1.14.5+repack-3 [121 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libhdf5-fortran-310 arm64 1.14.5+repack-3 [110 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-310 arm64 1.14.5+repack-3 [66.1 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-fortran-310 arm64 1.14.5+repack-3 [42.1 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libhdf5-hl-cpp-310 arm64 1.14.5+repack-3 [24.4 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] Fetched 67.1 MB in 0s (238 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../000-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../001-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package readline-common. Preparing to unpack .../002-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../018-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package bc. Preparing to unpack .../019-bc_1.07.1-4+b1_arm64.deb ... Unpacking bc (1.07.1-4+b1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../020-cmake-data_3.31.4-2_all.deb ... Unpacking cmake-data (3.31.4-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../021-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../022-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../023-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../024-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../025-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../026-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../027-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../028-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../029-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../030-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../031-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../032-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../033-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../034-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../035-libldap2_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../036-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../037-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../038-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../039-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../040-libtasn1-6_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../041-libgnutls30t64_3.8.8-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.8-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../042-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../043-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../044-libcurl4t64_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../045-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../046-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../047-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../048-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../049-cmake_3.31.4-2_arm64.deb ... Unpacking cmake (3.31.4-2) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../050-comerr-dev_2.1-1.47.2-1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../051-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../052-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../053-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../054-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../055-libfile-stripnondeterminism-perl_1.14.1-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../056-dh-strip-nondeterminism_1.14.1-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../057-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../058-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../059-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../060-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../061-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../062-debhelper_13.24.1_all.deb ... Unpacking debhelper (13.24.1) ... Selecting previously unselected package hdf5-helpers. Preparing to unpack .../063-hdf5-helpers_1.14.5+repack-3_arm64.deb ... Unpacking hdf5-helpers (1.14.5+repack-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../064-libgssrpc4t64_1.21.3-4_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../065-libkadm5clnt-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../066-libkdb5-10t64_1.21.3-4_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-4) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../067-libkadm5srv-mit12_1.21.3-4_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-4) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../068-krb5-multidev_1.21.3-4_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-4) ... Selecting previously unselected package libaec0:arm64. Preparing to unpack .../069-libaec0_1.1.3-1+b1_arm64.deb ... Unpacking libaec0:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libsz2:arm64. Preparing to unpack .../070-libsz2_1.1.3-1+b1_arm64.deb ... Unpacking libsz2:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libaec-dev:arm64. Preparing to unpack .../071-libaec-dev_1.1.3-1+b1_arm64.deb ... Unpacking libaec-dev:arm64 (1.1.3-1+b1) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../072-libboost1.83-dev_1.83.0-4_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-4) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../073-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../074-libbrotli-dev_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libcppunit-1.15-0:arm64. Preparing to unpack .../075-libcppunit-1.15-0_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libcppunit-dev:arm64. Preparing to unpack .../076-libcppunit-dev_1.15.1-4+b2_arm64.deb ... Unpacking libcppunit-dev:arm64 (1.15.1-4+b2) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../077-libidn2-dev_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libkrb5-dev:arm64. Preparing to unpack .../078-libkrb5-dev_1.21.3-4_arm64.deb ... Unpacking libkrb5-dev:arm64 (1.21.3-4) ... Selecting previously unselected package libldap-dev:arm64. Preparing to unpack .../079-libldap-dev_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap-dev:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../080-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../081-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../082-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:arm64. Preparing to unpack .../083-libnghttp2-dev_1.64.0-1_arm64.deb ... Unpacking libnghttp2-dev:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../084-libpsl-dev_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../085-libgmpxx4ldbl_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../086-libgmp-dev_2%3a6.3.0+dfsg-3_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../087-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../088-libunbound8_1.22.0-1+b1_arm64.deb ... Unpacking libunbound8:arm64 (1.22.0-1+b1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../089-libgnutls-dane0t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../090-libgnutls-openssl27t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.8-2) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../091-libp11-kit-dev_0.25.5-3_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../092-libtasn1-6-dev_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Selecting previously unselected package nettle-dev:arm64. Preparing to unpack .../093-nettle-dev_3.10-1+b1_arm64.deb ... Unpacking nettle-dev:arm64 (3.10-1+b1) ... Selecting previously unselected package libgnutls28-dev:arm64. Preparing to unpack .../094-libgnutls28-dev_3.8.8-2_arm64.deb ... Unpacking libgnutls28-dev:arm64 (3.8.8-2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../095-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../096-librtmp-dev_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssl-dev:arm64. Preparing to unpack .../097-libssl-dev_3.4.0-2_arm64.deb ... Unpacking libssl-dev:arm64 (3.4.0-2) ... Selecting previously unselected package libssh2-1-dev:arm64. Preparing to unpack .../098-libssh2-1-dev_1.11.1-1_arm64.deb ... Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:arm64. Preparing to unpack .../099-libzstd-dev_1.5.6+dfsg-2_arm64.deb ... Unpacking libzstd-dev:arm64 (1.5.6+dfsg-2) ... Selecting previously unselected package libcurl4-openssl-dev:arm64. Preparing to unpack .../100-libcurl4-openssl-dev_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../101-libgfortran5_14.2.0-14_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-14) ... Selecting previously unselected package libhdf5-310:arm64. Preparing to unpack .../102-libhdf5-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-cpp-310:arm64. Preparing to unpack .../103-libhdf5-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-fortran-310:arm64. Preparing to unpack .../104-libhdf5-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-310:arm64. Preparing to unpack .../105-libhdf5-hl-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-fortran-310:arm64. Preparing to unpack .../106-libhdf5-hl-fortran-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libhdf5-hl-cpp-310:arm64. Preparing to unpack .../107-libhdf5-hl-cpp-310_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../108-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg62-turbo-dev:arm64. Preparing to unpack .../109-libjpeg62-turbo-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libjpeg-dev:arm64. Preparing to unpack .../110-libjpeg-dev_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libhdf5-dev. Preparing to unpack .../111-libhdf5-dev_1.14.5+repack-3_arm64.deb ... Unpacking libhdf5-dev (1.14.5+repack-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libcppunit-1.15-0:arm64 (1.15.1-4+b2) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up libzstd-dev:arm64 (1.5.6+dfsg-2) ... Setting up bsdextrautils (2.40.4-1) ... Setting up hdf5-helpers (1.14.5+repack-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libaec0:arm64 (1.1.3-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autotools-dev (20220109.1) ... Setting up libunbound8:arm64 (1.22.0-1+b1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-3) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up comerr-dev:arm64 (2.1-1.47.2-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libssl-dev:arm64 (3.4.0-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libgfortran5:arm64 (14.2.0-14) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libtasn1-6:arm64 (4.19.0-3+b3) ... Setting up cmake-data (3.31.4-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libcppunit-dev:arm64 (1.15.1-4+b2) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-1) ... Setting up gettext (0.23.1-1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-3) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.5.4-2) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libldap-dev:arm64 (2.6.9+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-1) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libp11-kit-dev:arm64 (0.25.5-3) ... Setting up libgnutls30t64:arm64 (3.8.8-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.8-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up bc (1.07.1-4+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libgssrpc4t64:arm64 (1.21.3-4) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-4) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libcurl4t64:arm64 (8.11.1-1+b1) ... Setting up libkdb5-10t64:arm64 (1.21.3-4) ... Setting up debhelper (13.24.1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhdf5-310:arm64 (1.14.5+repack-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-4) ... Setting up cmake (3.31.4-2) ... Setting up libhdf5-fortran-310:arm64 (1.14.5+repack-3) ... Setting up krb5-multidev:arm64 (1.21.3-4) ... Setting up libhdf5-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-310:arm64 (1.14.5+repack-3) ... Setting up libkrb5-dev:arm64 (1.21.3-4) ... Setting up libcurl4-openssl-dev:arm64 (8.11.1-1+b1) ... Setting up libhdf5-hl-cpp-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-hl-fortran-310:arm64 (1.14.5+repack-3) ... Setting up libhdf5-dev (1.14.5+repack-3) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mapsembler2_2.2.4+dfsg1-4_source.changes dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' rm -rf mapsembler2_extremities/build cd mapsembler2_extend && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -rf *.o ../minia/*.o read_coherence_mapsembler/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' rm -f mapsembler2_extend/mapsembler_extend cd kissreads_graph && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -rf kissreads_graph *.o read_coherence_mapsembler/*.o ../minia/*.o make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' rm -f kissreads_graph/mapsembler2_kissreads_graph cd kissreads && make clean make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -rf ./src/*.o kissreads make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' rm -f kissreads/mapsembler2_kissreads dh_clean make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_auto_configure --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Warning (dev) at CMakeLists.txt:1 (project): cmake_minimum_required() should be called prior to this top-level project() call. Please see the cmake-commands(7) manual for usage documentation of both commands. This warning is for project developers. Use -Wno-dev to suppress it. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:3 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Deprecation Warning at cmake/FindTR1.cmake:10 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Call Stack (most recent call first): CMakeLists.txt:26 (include) -- Performing Test SHARED_PTR_USE_TR1_MEMORY -- Performing Test SHARED_PTR_USE_TR1_MEMORY - Success -- Performing Test SHARED_PTR_USE_MEMORY -- Performing Test SHARED_PTR_USE_MEMORY - Success -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_TR1_UNORDERED_MAP - Success -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP -- Performing Test UNORDERED_MAP_USE_UNORDERED_MAP - Success -- gatb-core is here '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core' CMake Deprecation Warning at thirdparty/gatb-core/CMakeLists.txt:4 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- CppUnit: found headers (in /usr/include) but not the library... -- CppUnit NOT FOUND -- Found Perl: /usr/bin/perl (found version "5.40.0") -- Looking for sys/types.h -- Looking for sys/types.h - found -- Looking for stdint.h -- Looking for stdint.h - found -- Looking for stddef.h -- Looking for stddef.h - found -- Check size of __uint128 -- Check size of __uint128 - failed CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:11 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "HAVE_int128_t_USE__uint128" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:33 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. -- Check size of __uint128_t -- Check size of __uint128_t - done CMake Warning (dev) at thirdparty/gatb-core/cmake/DefineInteger.cmake:12 (if): Policy CMP0054 is not set: Only interpret if() arguments as variables or keywords when unquoted. Run "cmake --help-policy CMP0054" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Quoted variables like "int128_t_USE__uint128_t" will no longer be dereferenced when the policy is set to NEW. Since the policy is not set the OLD behavior will be used. Call Stack (most recent call first): thirdparty/gatb-core/cmake/DefineInteger.cmake:34 (Check_Int128) thirdparty/gatb-core/CMakeLists.txt:39 (DefineInteger) This warning is for project developers. Use -Wno-dev to suppress it. ------------------------------------------------------------------------------------- -- C++ EXTENSIONS WILL BE USED... ------------------------------------------------------------------------------------- -- Options: -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -- SUPPORTED KMER SIZES ARE 32 64 96 128 -- ---------- GATB TOOLS ---------- CMake Deprecation Warning at thirdparty/gatb-core/thirdparty/emphf/CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:29 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at thirdparty/gatb-core/thirdparty/CMakeLists.txt:34 (add_custom_command): Exactly one of PRE_BUILD, PRE_LINK, or POST_BUILD must be given. Assuming POST_BUILD to preserve backward compatibility. Policy CMP0175 is not set: add_custom_command() rejects invalid arguments. Run "cmake --help-policy CMP0175" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 -- Configuring done (3.7s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. Use the cmake_policy command to set the policy and suppress this warning. The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build dh_auto_build --sourcedirectory=mapsembler2_extremities --builddirectory=mapsembler2_extremities/build cd mapsembler2_extremities/build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -S/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities -B/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_scan.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/hypergraph_sorter_seq.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/internal_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mmap_memory_model.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/mphf_hem.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_edge_list.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/packed_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/perfutils.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 20%] Built target emphf_copyasis [ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/Sequence.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/api/IBank.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/AbstractBank.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp [ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp [ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); | ~^ ~~~~~~~~~~~~~~ | | | | int long int | %ld In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 566 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 590 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MPHF.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/MapMPHF.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.hpp:29, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:30: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] [ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/Bloom.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Command.cpp [ 62%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/designpattern/impl/Observer.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Algorithm.cpp [ 65%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/TimeInfo.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp: In member function 'virtual void gatb::core::tools::misc::impl::Properties::setInt(const std::string&, const int64_t&)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp:397:43: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'long int' [-Wformat=] 397 | snprintf (buffer, sizeof(buffer), "%lld", value); | ~~~^ ~~~~~ | | | | | long int | long long int | %ld [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tokenizer.cpp [ 75%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Tool.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/XmlReader.cpp [ 79%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp [ 82%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageTools.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.cpp:22: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); | ~~~^ ~~~~~~~~~~~ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 82%] Linking CXX static library ../lib/None/libgatbcore.a cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -P CMakeFiles/gatbcore-static.dir/cmake_clean_target.cmake cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/gatbcore-static.dir/link.txt --verbose=1 /usr/bin/ar qc ../lib/None/libgatbcore.a "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Traversal.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Command.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/designpattern/impl/Observer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Algorithm.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tokenizer.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Tool.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/XmlReader.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/Storage.cpp.o" "CMakeFiles/gatbcore-static.dir/gatb/tools/storage/impl/StorageTools.cpp.o" /usr/bin/ranlib ../lib/None/libgatbcore.a make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 86%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o [ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ [ 93%] Linking CXX executable ../bin/None/dbgh5 cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbgh5.dir/link.txt --verbose=1 [ 96%] Linking CXX executable ../bin/None/dbginfo cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/dbginfo.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbgh5.dir/link.d CMakeFiles/dbgh5.dir/dbgh5.cpp.o -o ../bin/None/dbgh5 ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbgh5 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/dbginfo.dir/link.d CMakeFiles/dbginfo.dir/dbginfo.cpp.o -o ../bin/None/dbginfo ../lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 96%] Built target dbginfo [100%] Linking CXX executable mapsembler2_extremities /usr/bin/cmake -E cmake_link_script CMakeFiles/mapsembler2_extremities.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -rdynamic -Wl,--dependency-file=CMakeFiles/mapsembler2_extremities.dir/link.d CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -o mapsembler2_extremities ext/gatb-core/lib/None/libgatbcore.a -ldl -lpthread -lz -lhdf5 make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [100%] Built target mapsembler2_extremities make[3]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles 0 make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' dh_auto_build --sourcedirectory=mapsembler2_extend -- k=29 cd mapsembler2_extend && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' g++ -o ../minia/Pool.o -c ../minia/Pool.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryBank::open(bool)': ../minia/Bank.cpp:713:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 713 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'void BinaryReads::open(bool)': ../minia/Bank.cpp:798:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 798 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Bank.cpp: In member function 'int KmersBuffer::readkmers()': ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:51: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 256 | printf("loading bloom filter from file, nelem %lli \n",nchar); | ~~~^ ~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Bloom.cpp:257:7: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 257 | fread(blooma, sizeof(unsigned char), nchar, file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Hash16.o -c ../minia/Hash16.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Terminator.o -c ../minia/Terminator.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Kmer.o -c ../minia/Kmer.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, uint64_t, Bloom*, Set*)': ../minia/Terminator.cpp:275:105: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 275 | fprintf (stderr,"%cExtrapolating the number of branching kmers from the first %dM kmers: %lld",13,(int)ceilf(nb_extrapolation/1024.0/1024.0),estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp:303:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Terminator.cpp:303:97: warning: format '%lld' expects argument of type 'long long int', but argument 5 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 303 | if ((nb_branching_kmers%500)==0) fprintf (stderr,"%cIndexing branching kmers %lld / ~%lld",13,nb_branching_kmers,estimated_nb_branching_kmers); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Terminator.cpp: In constructor 'BranchingTerminator::BranchingTerminator(BinaryBank*, BinaryBank*, Bloom*, Set*)': ../minia/Terminator.cpp:337:38: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 337 | fprintf (stderr,"\nLoaded %lld branching kmers x %lu B = %.1f MB\n",nb_branching_kmers,sizeof(cell),((1<)*1.0)/1024.0/1024.0); | ~~~^ ~~~~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Traversal.o -c ../minia/Traversal.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/LinearCounter.o -c ../minia/LinearCounter.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Set.o -c ../minia/Set.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Set.cpp: In member function 'void AssocPairedSet::load(char*)': ../minia/Set.cpp:290:10: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 290 | fread(&liste_value[0], sizeof(pair_nt_kmer_t), liste_value.size(), file_data); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Utils.o -c ../minia/Utils.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Utils.cpp: In function 'uint64_t extrapolate_distinct_kmers_wrapped(long unsigned int, Bank*)': ../minia/Utils.cpp:434:100: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 434 | if ((NbRead%10000)==0) fprintf (stderr,(char*)"%cExtrapolating number of distinct kmers %lld",13,NbRead); | ~~~^ ~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Utils.cpp: In instantiation of 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:167:85: required from here 167 | template Bloom *bloom_create_bloo1(BloomCpt *bloom_counter, bool from_dump); | ^ ../minia/Utils.cpp:121:53: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Utils.cpp:121:79: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 121 | printf("load bloom from dump, containing %lli solid kmers b1_size %lli\n",nsolids,b1_size); | ~~~^ ~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:187:14: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 187 | ftruncate(fileno(F_kmercpt_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:199:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&cptk, sizeof(cptk), 1, F_kmercpt_read); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In file included from /usr/include/stdio.h:970, from ../minia/Utils.h:1, from ../minia/Utils.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:127:22: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void bloom_pass_reads_binary(T*, BloomCpt*, char*) [with T = Bloom]' at ../minia/Utils.cpp:84:29, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:151:32: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'Bloom* bloom_create_bloo1(T*, bool) [with T = BloomCpt]' at ../minia/Utils.cpp:148:20: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ ../minia/Utils.cpp: In function 'void end_kmer_count_partition(bool, Hash16*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); | ^ In function 'int sprintf(char*, const char*, ...)', inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:28:16, inlined from 'char* return_file_name(const char*)' at ../minia/Utils.cpp:25:7, inlined from 'void end_kmer_count_partition(bool, Hash16*)' at ../minia/Utils.cpp:196:91: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output 2 or more bytes (assuming 1025) into a destination of size 1024 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 56 | getcwd(current_path,sizeof(current_path)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:283:15: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 283 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ ../minia/SortingCount.cpp:537:19: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 537 | system("echo 3 > /proc/sys/vm/drop_caches"); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ g++ -o ../minia/Debloom.o -c ../minia/Debloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/SortingCount.cpp:45:25: warning: '%s' directive writing up to 1023 bytes into a region of size 512 [-Wformat-overflow=] 45 | sprintf(p_buf, "%s/%s", temp_dir, ep->d_name); | ^~ ~~~~~~~~ In file included from /usr/include/stdio.h:970, from ../minia/SortingCount.h:1, from ../minia/SortingCount.cpp:1: In function 'int sprintf(char*, const char*, ...)', inlined from 'void sorting_count(Bank*, char*, int, int, bool, int, bool)' at ../minia/SortingCount.cpp:45:16: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:34: note: '__builtin___sprintf_chk' output between 2 and 1280 bytes into a destination of size 512 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Debloom.cpp: In function 'int debloom(int, int)': ../minia/Debloom.cpp:154:89: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 154 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%c Writing positive Bloom Kmers %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:158:26: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 158 | fprintf(stderr,"\n%lli kmers written\n",cc); | ~~~^ ~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:191:76: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 191 | if ((NbSolidKmer%10000)==0) fprintf (stderr,"%cBuild Hash table %lld",13,NbSolidKmer); | ~~~^ ~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %ld ../minia/Debloom.cpp:195:58: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:195:65: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 195 | fprintf(stderr,"End of debloom partition %lli / %lld \n",hasht1->nb_elem,max_kmer_per_part); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp:208:34: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 208 | fprintf(stderr,"\n%lli false positives written , partition %i \n",n_false_positives,numpart); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:225:81: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 225 | fprintf(stderr,"Total nb false positives stored in the Debloom hashtable %lli \n",n_false_positives); | ~~~^ ~~~~~~~~~~~~~~~~~ | | | | | uint64_t {aka long unsigned int} | long long int | %li ../minia/Debloom.cpp: In function 'Set* load_false_positives()': ../minia/Debloom.cpp:280:112: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'int64_t' {aka 'long int'} [-Wformat=] 280 | if ((NbInsertedKmers%10000)==0) fprintf (stderr,(char*)"%cInsert false positive Kmers in hash table %lld",13,NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long int | %ld ../minia/Debloom.cpp:284:36: warning: format '%lld' expects argument of type 'long long int', but argument 3 has type 'int64_t' {aka 'long int'} [-Wformat=] 284 | fprintf (stderr,"\nInserted %lld false positive kmers in the hash structure.\n\n",NbInsertedKmers); | ~~~^ ~~~~~~~~~~~~~~~ | | | | long long int int64_t {aka long int} | %ld ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:50: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); | ~~~^ ~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li ../minia/Debloom.cpp:448:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 448 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ../minia/Debloom.cpp: In function 'void print_size_summary(FPSetCascading4*)': ../minia/Debloom.cpp:465:47: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 465 | fprintf(stderr," Total %.2lf MB for %lld solid kmers ==> %.2lf bits / solid kmer\n\n", toMB(total_size), nbkmers_solid, total_size / nbkmers_solid); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o commons.o -c commons.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o IterativeExtensions.o -c IterativeExtensions.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment_Bank.o -c Fragment_Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o GraphOutput.o -c GraphOutput.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o mapsembler_extend ../minia/Pool.o ../minia/Bank.o ../minia/Bloom.o ../minia/Hash16.o ../minia/Terminator.o ../minia/Kmer.o ../minia/Traversal.o ../minia/LinearCounter.o ../minia/Set.o ../minia/Utils.o ../minia/SortingCount.o ../minia/Debloom.o ../minia/OAHash.o commons.o IterativeExtensions.o Fragment_Bank.o Fragment.o GraphOutput.o mapsembler_extend.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ mapsembler_extend.cpp: In function 'int main(int, char**)': mapsembler_extend.cpp:145:50: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'int64_t' {aka 'long int'} [-Wformat=] 145 | printf(" Will use genome_size=%llu\n", genome_size); //TODO format | ~~~^ ~~~~~~~~~~~ | | | | | int64_t {aka long int} | long long unsigned int | %lu mapsembler_extend.cpp:320:76: warning: ignoring return value of 'int system(const char*)' declared with attribute 'warn_unused_result' [-Wunused-result] 320 | command = string("rm -f ")+string(prefix_trashable)+string("*"); system((char *)command.c_str()); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend' dh_auto_build --sourcedirectory=kissreads_graph -- k=29 cd kissreads_graph && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' g++ -o block_allocator.o -c block_allocator.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o DeBruijnGraph.o -c DeBruijnGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Fragment.o -c Fragment.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 DeBruijnGraph.cpp: In member function 'void DBG::index_nodes()': DeBruijnGraph.cpp:952:41: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 952 | printf("total seeds in fragments %lli size %lli MB \n",total_seeds,total_seeds*sizeof(couple)/1024LL/1024LL); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o json.o -c json.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/libchash.o -c read_coherence_mapsembler/libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFind(HashTable*, u_long)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1227:3: note: in expansion of macro 'LOAD_AND_RETURN' 1227 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFindLast(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1232:4: note: in expansion of macro 'LOAD_AND_RETURN' 1232 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashFirstBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1296:10: note: in expansion of macro 'LOAD_AND_RETURN' 1296 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HTItem* HashNextBucket(HashTable*)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:226:7: note: in expansion of macro 'READ_UL' 226 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1306:10: note: in expansion of macro 'LOAD_AND_RETURN' 1306 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'HashTable* HashDoLoad(FILE*, char* (*)(FILE*, int), HashTable*)': read_coherence_mapsembler/libchash.cpp:1413:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1413 | fread(szMagicKey, 1, 4, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1422:4: note: in expansion of macro 'READ_UL' 1422 | READ_UL(fp, ht->cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1423:4: note: in expansion of macro 'READ_UL' 1423 | READ_UL(fp, ht->cItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1424:4: note: in expansion of macro 'READ_UL' 1424 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1427:4: note: in expansion of macro 'READ_UL' 1427 | READ_UL(fp, cchKey); | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:1429:9: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 1429 | fread(rgchKeys, 1, cchKey, fp); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:1434:7: note: in expansion of macro 'READ_UL' 1434 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp: In function 'u_long SparseRead(FILE*, SparseBin**)': read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:628:4: note: in expansion of macro 'READ_UL' 628 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ read_coherence_mapsembler/libchash.cpp:199:12: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 199 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ read_coherence_mapsembler/libchash.cpp:633:10: note: in expansion of macro 'READ_UL' 633 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ g++ -o read_coherence_mapsembler/couple.o -c read_coherence_mapsembler/couple.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/misc_tools.o -c read_coherence_mapsembler/misc_tools.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_groups.o -c read_coherence_mapsembler/read_groups.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/consensus_common.o -c read_coherence_mapsembler/consensus_common.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/list.o -c read_coherence_mapsembler/list.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o read_coherence_mapsembler/read_coherence.o -c read_coherence_mapsembler/read_coherence.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/read_coherence.cpp: In function 'char** read_coherent_homologs(hash_t, const char*, int, int, int, int, int*)': read_coherence_mapsembler/read_coherence.cpp:988:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 988 | "error group %X: recomputed number of substitutions (%d) not matching dynamic number of substitutions (%d) (so i'm glad i coded this test)\n fragment: %s\nconsensus:%s\n", | ~^ | | | unsigned int 989 | current_read_group, number_substitutions, | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} read_coherence_mapsembler/read_coherence.cpp:1002:39: warning: format '%X' expects argument of type 'unsigned int', but argument 3 has type 'group_t' {aka 'list_*'} [-Wformat=] 1002 | "error group %X: recomputed consensus (%s) not matching dynamic consensus (%s) (so i'm glad i coded this test)\n fragment: %s\n", | ~^ | | | unsigned int 1003 | current_read_group, substarters[*nb_consensuses], | ~~~~~~~~~~~~~~~~~~ | | | group_t {aka list_*} g++ -o read_coherence_mapsembler/interface_libchash.o -c read_coherence_mapsembler/interface_libchash.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ read_coherence_mapsembler/interface_libchash.cpp: In function 'void iterate_and_fill_offsets(hash_t)': read_coherence_mapsembler/interface_libchash.cpp:408:36: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li read_coherence_mapsembler/interface_libchash.cpp:408:54: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 408 | printf("total nb diff seeds %lli (should use %lli MB) \n",nbdiffseeds,(nbdiffseeds*16)/1024/1024); | ~~~^ ~~~~~~~~~~~~~~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %li g++ -o commons.o -c commons.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o Loader.o -c Loader.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ReadMapper.o -c ReadMapper.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ReadMapper.cpp: In function 'uint64_t map_reads(Bank*, std::vector)': ReadMapper.cpp:38:31: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:38:56: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 38 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:23: warning: format '%lld' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld ReadMapper.cpp:240:48: warning: format '%lld' expects argument of type 'long long int', but argument 4 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 240 | printf("\r %lld read%s mapped among %lld read%s tested", number_mapped, number_mapped>1?"s":"", number_tested, number_tested>1?"s":""); | ~~~^ ~~~~~~~~~~~~~ | | | | long long int uint64_t {aka long unsigned int} | %ld g++ -o kissreads_graph block_allocator.o DeBruijnGraph.o Fragment.o json.o read_coherence_mapsembler/libchash.o read_coherence_mapsembler/couple.o read_coherence_mapsembler/misc_tools.o read_coherence_mapsembler/read_groups.o read_coherence_mapsembler/consensus_common.o read_coherence_mapsembler/list.o read_coherence_mapsembler/read_coherence.o read_coherence_mapsembler/interface_libchash.o commons.o ../minia/Kmer.o ../minia/Bank.o Loader.o ReadMapper.o KissReadsGraph.cpp -O3 -L../thirdparty/zlib/build -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -DMINIA_IS_IN_PARENT_FOLDER -D_FILE_OFFSET_BITS=64 -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads_graph' dh_auto_build --sourcedirectory=kissreads -- k=29 cd kissreads && make -j12 "INSTALL=install --strip-program=true" k=29 make[2]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' gcc -o src/coherent_algorithm.o -c src/coherent_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/commons.o -c src/commons.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/couple.o -c src/couple.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/extension_algorithm.o -c src/extension_algorithm.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/fragment_index.o -c src/fragment_index.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/kissReads.o -c src/kissReads.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/list.o -c src/list.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/outputs.o -c src/outputs.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/interface_libchash.o -c src/interface_libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ gcc -o src/libchash.o -c src/libchash.c -O3 -lz -fopenmp -DOMP -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -lz -I./include/ src/libchash.c: In function 'HashFind': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1221:4: note: in expansion of macro 'LOAD_AND_RETURN' 1221 | LOAD_AND_RETURN(ht, Find(ht, KEY_TRUNC(ht, key), NULL)); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFindLast': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1226:4: note: in expansion of macro 'LOAD_AND_RETURN' 1226 | LOAD_AND_RETURN(ht, ht->posLastFind); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashFirstBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1290:10: note: in expansion of macro 'LOAD_AND_RETURN' 1290 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashNextBucket': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:220:7: note: in expansion of macro 'READ_UL' 220 | READ_UL((ht)->fpData, cchData); \ | ^~~~~~~ src/libchash.c:1300:10: note: in expansion of macro 'LOAD_AND_RETURN' 1300 | LOAD_AND_RETURN(ht, retval); | ^~~~~~~~~~~~~~~ src/libchash.c: In function 'HashDoLoad': src/libchash.c:1407:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1407 | fread(szMagicKey, 1, 4, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1416:4: note: in expansion of macro 'READ_UL' 1416 | READ_UL(fp, ht->cchKey); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1417:4: note: in expansion of macro 'READ_UL' 1417 | READ_UL(fp, ht->cItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1418:4: note: in expansion of macro 'READ_UL' 1418 | READ_UL(fp, ht->cDeletedItems); | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1421:4: note: in expansion of macro 'READ_UL' 1421 | READ_UL(fp, cchKey); | ^~~~~~~ src/libchash.c:1423:4: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 1423 | fread(rgchKeys, 1, cchKey, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:1428:7: note: in expansion of macro 'READ_UL' 1428 | READ_UL(fp, bck->data); /* all we need if dataRead is NULL */ | ^~~~~~~ src/libchash.c: In function 'SparseRead': src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:622:4: note: in expansion of macro 'READ_UL' 622 | READ_UL(fp, cBuckets); /* actually, cBuckets is stored */ | ^~~~~~~ src/libchash.c:193:7: warning: ignoring return value of 'fread' declared with attribute 'warn_unused_result' [-Wunused-result] 193 | fread(&_ul, sizeof(_ul), 1, (fp)); \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ src/libchash.c:627:10: note: in expansion of macro 'READ_UL' 627 | READ_UL(fp, (*pbinSparse)[i].bmOccupied[j]); | ^~~~~~~ gcc -o kissreads src/coherent_algorithm.o src/commons.o src/couple.o src/extension_algorithm.o src/fragment_index.o src/kissReads.o src/list.o src/outputs.o src/interface_libchash.o src/libchash.o -Wl,-z,relro -Wl,-z,now -Wl,-L/usr/lib/aarch64-linux-gnu/hdf5/serial -lm -O3 -lz -lgomp ################# # Compilation OK# ################# make[2]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/kissreads' make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/mapsembler2/ debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' mv ./kissreads/kissreads ./kissreads/mapsembler2_kissreads mv ./kissreads_graph/kissreads_graph ./kissreads_graph/mapsembler2_kissreads_graph cp run_mapsembler2_pipeline.sh run_mapsembler2_pipeline dh_install make[1]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mapsembler2' in '../mapsembler2_2.2.4+dfsg1-4_arm64.deb'. dpkg-deb: building package 'mapsembler2-dbgsym' in '../mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo dpkg-genchanges --build=binary -O../mapsembler2_2.2.4+dfsg1-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4190082 and its subdirectories I: Current time: Tue Feb 24 18:48:50 +14 2026 I: pbuilder-time-stamp: 1771908530 + false + set +x Tue Feb 24 04:48:50 UTC 2026 I: Signing ./b2/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo as mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc Tue Feb 24 04:48:50 UTC 2026 I: Signed ./b2/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo as ./b2/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc Tue Feb 24 04:48:50 UTC 2026 - build #2 for mapsembler2/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Tue Feb 24 04:48:50 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-jqDcY3WP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW: total 372 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:22 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 22:25 b2 -rw-r--r-- 1 jenkins jenkins 2265 Aug 20 2021 mapsembler2_2.2.4+dfsg1-4.dsc -rw------- 1 jenkins jenkins 360703 Jan 21 22:22 rbuildlog.w4WLQ62 /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1: total 3540 -rw-r--r-- 1 jenkins jenkins 356967 Jan 21 22:22 build.log -rw-r--r-- 1 jenkins jenkins 2484108 Jan 21 22:22 mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 24464 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2265 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4.dsc -rw-r--r-- 1 jenkins jenkins 7702 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8584 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1903 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 707172 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1758 Jan 21 22:22 mapsembler2_2.2.4+dfsg1-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2: total 3528 -rw-r--r-- 1 jenkins jenkins 358912 Jan 21 22:25 build.log -rw-r--r-- 1 jenkins jenkins 2484112 Jan 21 22:25 mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 24464 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2265 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4.dsc -rw-r--r-- 1 jenkins jenkins 7702 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8584 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1903 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 706984 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1758 Jan 21 22:25 mapsembler2_2.2.4+dfsg1-4_source.changes Tue Jan 21 22:25:52 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Jan 21 22:25:53 UTC 2025 I: mapsembler2_2.2.4+dfsg1-4_arm64.changes: Format: 1.8 Date: Fri, 20 Aug 2021 10:21:44 +0200 Source: mapsembler2 Binary: mapsembler2 mapsembler2-dbgsym Architecture: arm64 Version: 2.2.4+dfsg1-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: mapsembler2 - bioinformatics targeted assembly software Closes: 984226 Changes: mapsembler2 (2.2.4+dfsg1-4) unstable; urgency=medium . * d/salsa-ci.yml: disable i386 build and reprotest in Salsa CI * d/control: updated uploader address * d/control: standard version 4.5.1 * d/mans/mapsembler2_kissreads.1: fix typo-in-manual-page * spelling.patch: fix spelling-error-in-binary * add gcc11.patch (Closes: #984226) * d/s/lintian-overrides: override notices about components not sent, or otherwise missing about upstream, who is inactive for a while. * Standards-Version: 4.6.0 (routine-update) Checksums-Sha1: ad93ff498bd826b69607f30364c3053ebf6072da 2484108 mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb b1cfd69fc85e60f4e1bc6ccf5d7d000cdef6e288 7702 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo 313b225884c8f59f85c9406f4940d7133b52523f 707172 mapsembler2_2.2.4+dfsg1-4_arm64.deb Checksums-Sha256: 1c88040638fd2a72e80c0c9bb76dd98e6b322a0e6e36850024085717b83245fb 2484108 mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb 2d8de2f4416eafdb57314d10a8befd1292c75144e309a0181e0c86468dfdd0fb 7702 mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo 18aa146a186c848fbf003ad41c01754d1f26877e09976d6557fb5650cc754832 707172 mapsembler2_2.2.4+dfsg1-4_arm64.deb Files: 319c6076fb477c2053694882aaa9e768 2484108 debug optional mapsembler2-dbgsym_2.2.4+dfsg1-4_arm64.deb 9ed5eb3f7ceedcc8f1be44db42837f59 7702 science optional mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo c9ccf307e7a5f6200298244ea7b0ac34 707172 science optional mapsembler2_2.2.4+dfsg1-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbd/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diffoscope.html' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdtxt/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diffoscope.txt.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/dbdjson/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diffoscope.json.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-21 22:22:39.453203273 +0000 +++ b2/build.log 2025-01-21 22:25:51.804591694 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Jan 21 10:18:33 -12 2025 -I: pbuilder-time-stamp: 1737497913 +I: Current time: Tue Feb 24 18:45:41 +14 2026 +I: pbuilder-time-stamp: 1771908341 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying gcc11.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 24 04:45 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='c8916a9e2ceb453dada8eb7ceb512fbc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2623562' - PS1='# ' - PS2='> ' + INVOCATION_ID=3ba08647c559473fb3fc80db5260c2d5 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=4190082 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_kBuw --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1 --logfile b1/build.log mapsembler2_2.2.4+dfsg1-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/pbuilderrc_BdQC --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2 --logfile b2/build.log mapsembler2_2.2.4+dfsg1-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2623562/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -240,7 +272,7 @@ Get: 110 http://deb.debian.org/debian unstable/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libhdf5-dev arm64 1.14.5+repack-3 [3225 kB] -Fetched 67.1 MB in 1s (102 MB/s) +Fetched 67.1 MB in 0s (238 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -708,7 +740,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mapsembler2_2.2.4+dfsg1-4_source.changes +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mapsembler2_2.2.4+dfsg1-4_source.changes dpkg-buildpackage: info: source package mapsembler2 dpkg-buildpackage: info: source version 2.2.4+dfsg1-4 dpkg-buildpackage: info: source distribution unstable @@ -1094,7 +1130,7 @@ -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- ---------- GATB EXAMPLES ---------- -- Add compilation option -DUNORDERED_MAP_TR1_FOUND=1 --- Configuring done (7.4s) +-- Configuring done (3.7s) CMake Warning (dev) at thirdparty/gatb-core/CMakeLists.txt:221 (ADD_DEPENDENCIES): Policy CMP0046 is not set: Error on non-existent dependency in add_dependencies. Run "cmake --help-policy CMP0046" for policy details. @@ -1103,7 +1139,7 @@ The dependency target "hdf5" of target "gatbcore-static" does not exist. This warning is for project developers. Use -Wno-dev to suppress it. --- Generating done (0.2s) +-- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: @@ -1125,48 +1161,48 @@ make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/depend -make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/depend make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build -make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build.make ext/gatb-core/thirdparty/CMakeFiles/emphf_copyasis.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E make_directory /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +make -f ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build.make ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/build +make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 0%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o [ 3%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/base_hash.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankAlbum.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankAlbum.cpp +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankBinary.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankBinary.cpp [ 6%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankConverterAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 10%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankFasta.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankFasta.cpp +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankHelpers.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankHelpers.cpp +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/bitstream.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRandom.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRandom.cpp -[ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/common.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +[ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o [ 13%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankRegistery.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankRegistery.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf [ 17%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/bank/impl/BankSplitter.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankSplitter.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/BranchingAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Frontline.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp -[ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_scan_mmap.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +[ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Graph.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/compute_mphf_seq.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/emphf_config.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/gen_synthetic_data.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf @@ -1183,6 +1219,11 @@ cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/ranked_bitpair_vector.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_generic.hpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf +make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +[ 20%] Built target emphf_copyasis +[ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, @@ -1195,17 +1236,15 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/thirdparty && /usr/bin/cmake -E copy_if_different /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty/emphf/test_mphf_hem.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include/None/emphf -make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -[ 20%] Built target emphf_copyasis -[ 20%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/debruijn/impl/Terminator.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } @@ -1216,9 +1255,8 @@ from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.hpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Frontline.cpp:24: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } @@ -1229,13 +1267,14 @@ from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.hpp:33, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/bank/impl/BankConverterAlgorithm.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ +[ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/MemoryCommon.hpp:32, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.hpp:31, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/api/Data.hpp:32, @@ -1248,40 +1287,35 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 126 | strerror_r (errno, buffer, BUFSIZ); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ -[ 24%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.hpp:32, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/BranchingAlgorithm.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -[ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -[ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp -[ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.hpp:45, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.hpp:34, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.hpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Terminator.cpp:24: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -[ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp +[ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/BloomBuilder.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/BloomBuilder.cpp +[ 27%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/DebloomAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/DebloomAlgorithm.cpp +[ 31%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/MPHFAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/MPHFAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, @@ -1305,14 +1339,13 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 566 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 590 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] + 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); + | ~^ ~~~~~~~~~~~~~~ + | | | + | int long int + | %ld In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here @@ -1378,15 +1411,51 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp: In member function 'gatb::core::debruijn::impl::Path gatb::core::debruijn::impl::MonumentTraversal::most_abundant_consensus(std::set&)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Traversal.cpp:772:47: warning: format '%d' expects argument of type 'int', but argument 3 has type 'long int' [-Wformat=] - 772 | printf("path: %s mean abundance: %d\n",p_str.c_str(),mean_abundance); - | ~^ ~~~~~~~~~~~~~~ - | | | - | int long int - | %ld +[ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/Model.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/Model.cpp +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here + 175 | ~BagCountCompressedFile () + | ^ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] + 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); + | ~~~^ ~~~~~~~~~~ + | | | + | long long unsigned int u_int64_t {aka long unsigned int} + | %lu +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] + 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); + | ~~~^ ~~~~~~~~~~~ + | | | + | long long unsigned int u_int64_t {aka long unsigned int} + | %lu +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(gatb::core::bank::IBank*, const char*, ...)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:566:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 566 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp: In static member function 'static gatb::core::debruijn::impl::Graph gatb::core::debruijn::impl::Graph::create(const char*, ...)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/debruijn/impl/Graph.cpp:590:15: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 590 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ [ 34%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/PartitionsCommand.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/PartitionsCommand.cpp +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 113 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 113 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +[ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, @@ -1404,8 +1473,10 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithm.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +[ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, @@ -1416,39 +1487,18 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here - 175 | ~BagCountCompressedFile () +[ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] + 375 | } | ^ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] - 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); - | ~~~^ ~~~~~~~~~~ - | | | - | long long unsigned int u_int64_t {aka long unsigned int} - | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] - 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); - | ~~~^ ~~~~~~~~~~~ - | | | - | long long unsigned int u_int64_t {aka long unsigned int} - | %lu -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 113 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 113 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, @@ -1459,36 +1509,30 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -[ 37%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here - 175 | ~BagCountCompressedFile () +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] + 375 | } | ^ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] - 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); - | ~~~^ ~~~~~~~~~~ - | | | - | long long unsigned int u_int64_t {aka long unsigned int} - | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] - 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); - | ~~~^ ~~~~~~~~~~~ - | | | - | long long unsigned int u_int64_t {aka long unsigned int} - | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1504,7 +1548,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1520,7 +1564,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1536,7 +1580,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1552,46 +1596,28 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -[ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp [ 41%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp -[ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates1.cpp:1: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] - 375 | } - | ^ -[ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] - 126 | strerror_r (errno, buffer, BUFSIZ); - | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 55 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1607,6 +1633,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu +[ 44%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () @@ -1623,6 +1650,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () @@ -1639,7 +1667,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1655,10 +1683,8 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -[ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ @@ -1666,41 +1692,15 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<32>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates2.cpp:1: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] - 375 | } - | ^ -[ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] - 375 | } - | ^ -[ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt8]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1716,7 +1716,13 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::NativeInt64]': +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.hpp:32, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemCommon.cpp:20: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp: In constructor 'gatb::core::system::ExceptionErrno::ExceptionErrno(const char*, ...)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/api/Exception.hpp:126:24: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] + 126 | strerror_r (errno, buffer, BUFSIZ); + | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1732,18 +1738,23 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] - 375 | } +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here + 175 | ~BagCountCompressedFile () | ^ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::misc::IHistogram::Entry]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:23: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 2 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] + 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); + | ~~~^ ~~~~~~~~~~ + | | | + | long long unsigned int u_int64_t {aka long unsigned int} + | %lu +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:177:46: warning: format '%llu' expects argument of type 'long long unsigned int', but argument 4 has type 'u_int64_t' {aka 'long unsigned int'} [-Wformat=] + 177 | printf("In %llu B (%llu MB ) Out %llu B (%llu MB ) ratio %f \n",_sizeInput,_sizeInput/(1024LL*1024LL), _sizeOutput,_sizeOutput/(1024LL*1024LL), _sizeInput / (float) _sizeOutput); + | ~~~^ ~~~~~~~~~~~ + | | | + | long long unsigned int u_int64_t {aka long unsigned int} + | %lu +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<2>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1759,7 +1770,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<1>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1775,8 +1786,49 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu +[ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemLinux.cpp +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates3.cpp:1: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] + 375 | } + | ^ +[ 48%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/FileSystemMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/FileSystemMacos.cpp +[ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/System.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/System.cpp +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:35, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/StorageHDF5.hpp:33, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.tpp:471, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:466, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.hpp:38, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:25, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithmTemplates4.cpp:1: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] + 375 | } + | ^ +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt8]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 113 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<3>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<1>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1824,7 +1876,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1840,42 +1892,8 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<2>]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 113 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<64>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 113 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 55 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] -In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] - 55 | vasprintf (&buffer, fmt, args); - | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/CollectionHDF5.hpp:34: -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<3>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::tools::math::LargeInt<4>]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1923,7 +1941,7 @@ | | | | long long unsigned int u_int64_t {aka long unsigned int} | %lu -/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp: In instantiation of 'gatb::core::tools::collections::impl::BagCountCompressedFile::~BagCountCompressedFile() [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/BagFile.hpp:175:5: required from here 175 | ~BagCountCompressedFile () | ^ @@ -1944,19 +1962,37 @@ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 113 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ -[ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/storage/impl/Storage.hpp:40: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::LargeInt<4>]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 113 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<96>::Count]': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::math::NativeInt64]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::tools::misc::IHistogram::Entry]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] +In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] + 55 | vasprintf (&buffer, fmt, args); + | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp: In member function 'void gatb::core::tools::collections::impl::CollectionAbstract::addProperty(const std::string&, const char*, ...) [with Item = gatb::core::kmer::impl::Kmer<128>::Count]': +/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/CollectionAbstract.hpp:113:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/kmer/impl/SortingCountAlgorithm.cpp:26: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 51%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/SystemInfoCommon.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/SystemInfoCommon.cpp +[ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadLinux.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadLinux.cpp [ 55%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/system/impl/ThreadMacos.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/system/impl/ThreadMacos.cpp [ 58%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/collections/impl/Bloom.cpp.o @@ -1971,13 +2007,13 @@ cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Histogram.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Histogram.cpp [ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/OptionsParser.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp -[ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/OptionsParser.cpp:23: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp: In static member function 'static std::string gatb::core::tools::misc::impl::Stringify::format(const char*, ...)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Stringify.hpp:55:19: warning: ignoring return value of 'int vasprintf(char**, const char*, __gnuc_va_list)' declared with attribute 'warn_unused_result' [-Wunused-result] 55 | vasprintf (&buffer, fmt, args); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ +[ 68%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Progress.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Progress.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/src && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -MF CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o.d -o CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/Property.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/misc/impl/Property.cpp [ 72%] Building CXX object ext/gatb-core/src/CMakeFiles/gatbcore-static.dir/gatb/tools/misc/impl/TimeInfo.cpp.o @@ -2039,53 +2075,53 @@ make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' [ 82%] Built target gatbcore-static make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/depend -make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/depend -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" -make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/depend -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbginfo.dir/DependInfo.cmake "--color=" -make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/CMakeFiles/mapsembler2_extremities.dir/DependInfo.cmake "--color=" +make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools/CMakeFiles/dbgh5.dir/DependInfo.cmake "--color=" +make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' make -f ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build.make ext/gatb-core/tools/CMakeFiles/dbgh5.dir/build make[4]: Leaving directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +make -f CMakeFiles/mapsembler2_extremities.dir/build.make CMakeFiles/mapsembler2_extremities.dir/build make -f ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build.make ext/gatb-core/tools/CMakeFiles/dbginfo.dir/build make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' -[ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -/usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp +make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +make[4]: Entering directory '/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build' +[ 86%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o [ 86%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -/usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp -[ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp +[ 89%] Building CXX object CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o [ 89%] Building CXX object ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o +cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbgh5.dir/dbgh5.cpp.o -MF CMakeFiles/dbgh5.dir/dbgh5.cpp.o.d -o CMakeFiles/dbgh5.dir/dbgh5.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp +/usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/mapsembler2_extremities.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp +/usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -DUNORDERED_MAP_TR1_FOUND=1 -MD -MT CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -MF CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o.d -o CMakeFiles/mapsembler2_extremities.dir/src/main.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp cd /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/tools && /usr/bin/c++ -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/build/ext/gatb-core/include -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src -I/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/thirdparty -g -O2 -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial -O3 -DINT128_FOUND -DWITH_LAMBDA_EXPRESSION -std=c++0x -Wno-invalid-offsetof -MD -MT ext/gatb-core/tools/CMakeFiles/dbginfo.dir/dbginfo.cpp.o -MF CMakeFiles/dbginfo.dir/dbginfo.cpp.o.d -o CMakeFiles/dbginfo.dir/dbginfo.cpp.o -c /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbgh5.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.cpp:13: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } | ^ In file included from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/gatb_core.hpp:42, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/mapsembler2_extremities.hpp:23, - from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/src/main.cpp:20: + from /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/tools/dbginfo.cpp:20: /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp: In member function 'size_t gatb::core::tools::collections::impl::IteratorCountCompressedFile::fill(std::vector&, size_t)': /build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extremities/thirdparty/gatb-core/src/gatb/tools/collections/impl/IteratorFile.hpp:375:5: warning: no return statement in function returning non-void [-Wreturn-type] 375 | } @@ -2115,7 +2151,6 @@ cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ g++ -o ../minia/Bank.o -c ../minia/Bank.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ -g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Bank.cpp: In member function 'void Bank::init(char**, int)': ../minia/Bank.cpp:282:19: warning: ignoring return value of 'char* strerror_r(int, char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 282 | strerror_r( errno, buffer, BUFSIZ ); // get string message from errno @@ -2132,6 +2167,7 @@ ../minia/Bank.cpp:988:14: warning: ignoring return value of 'size_t fread(void*, size_t, size_t, FILE*)' declared with attribute 'warn_unused_result' [-Wunused-result] 988 | fread(buffer,sizeof( char),block_size, binary_read_file); // read a block of sequences into the buffer | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ +g++ -o ../minia/Bloom.o -c ../minia/Bloom.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/Bloom.cpp: In member function 'void Bloom::load(char*)': ../minia/Bloom.cpp:256:51: warning: format '%lli' expects argument of type 'long long int', but argument 2 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] @@ -2223,7 +2259,6 @@ ../minia/Utils.cpp:225:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 225 | ftruncate(fileno(F_kmercpt_read), 0); //erase previous file | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ -g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Utils.cpp: In function 'char* return_file_name(const char*)': ../minia/Utils.cpp:28:32: warning: '__builtin___sprintf_chk' may write a terminating nul past the end of the destination [-Wformat-overflow=] 28 | sprintf(fileName,"%s.%s",prefix,suffix); @@ -2302,6 +2337,7 @@ | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ +g++ -o ../minia/SortingCount.o -c ../minia/SortingCount.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial cc1plus: warning: '-Werror=' argument '-Werror=implicit-function-declaration' is not valid for C++ ../minia/SortingCount.cpp: In function 'void sorting_count(Bank*, char*, int, int, bool, int, bool)': ../minia/SortingCount.cpp:56:15: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] @@ -2390,7 +2426,6 @@ | | | | long long int int64_t {aka long int} | %ld -g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void print_size_summary(FPSet*)': ../minia/Debloom.cpp:445:50: warning: format '%lli' expects argument of type 'long long int', but argument 3 has type 'uint64_t' {aka 'long unsigned int'} [-Wformat=] 445 | fprintf(stderr, "Size of the FP table : %lli FP x %d bits = %.2lf MB \n", fp->capacity(), bits_per_FP_element, toMB((double)(size_T1)) ); @@ -2411,6 +2446,7 @@ | | | | long long int uint64_t {aka long unsigned int} | %ld +g++ -o ../minia/OAHash.o -c ../minia/OAHash.cpp -O3 -lz --std=gnu++0x -DMINIA_IS_IN_PARENT_FOLDER -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/mapsembler2-2.2.4+dfsg1/mapsembler2_extend=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/hdf5/serial ../minia/Debloom.cpp: In function 'void end_debloom_partition(bool)': ../minia/Debloom.cpp:29:18: warning: ignoring return value of 'int ftruncate(int, __off_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 29 | ftruncate(fileno(F_debloom_write), 0); //erase previous file @@ -2780,12 +2816,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/4190082/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2623562 and its subdirectories -I: Current time: Tue Jan 21 10:22:38 -12 2025 -I: pbuilder-time-stamp: 1737498158 +I: removing directory /srv/workspace/pbuilder/4190082 and its subdirectories +I: Current time: Tue Feb 24 18:48:50 +14 2026 +I: pbuilder-time-stamp: 1771908530 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diff: 94.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.diff.gz b2/build.log: 92.9% -- replaced with stdout Compressing the 1st log... b1/build.log: 93.2% -- replaced with stdout Tue Jan 21 22:25:54 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_mapsembler2_unstable_arm64_1737498354 + touch /var/log/reproducible-builds/diffoscope_stamp_mapsembler2_unstable_arm64_1737498354 + RESULT=0 + systemd-run '--description=diffoscope on mapsembler2/2.2.4+dfsg1-4 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_11-81288 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW --run-session -c jenkins-reproducible-unstable-diffoscope-27b93b4c-0621-4767-a002-fd7fff848115 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/dbd-tmp-Xb8vSrm ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1/mapsembler2_2.2.4+dfsg1-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2/mapsembler2_2.2.4+dfsg1-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_11-81288.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/mapsembler2_2.2.4+dfsg1-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b1/mapsembler2_2.2.4+dfsg1-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6lT2GdSW/b2/mapsembler2_2.2.4+dfsg1-4_arm64.changes ## close_archive (total time: 0.000s) 0.000s 14 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 2 calls diffoscope.comparators.deb.DebContainer 0.000s 2 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 68.268s) 35.599s 1039 calls readelf 27.036s 121 calls diff 4.936s 176 calls objdump 0.323s 2 calls objcopy 0.236s 18 calls xz 0.127s 22 calls strings 0.005s 1 call cmp 0.005s 1 call cmp (external) 0.001s 19 calls cmp (internal) ## compare_files (cumulative) (total time: 308.586s) 56.497s 1 call abc.DotChangesFile 56.450s 2 calls abc.DebFile 56.384s 4 calls abc.XzFile 56.136s 2 calls abc.DebDataTarFile 55.857s 2 calls abc.ElfFile 26.180s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.734s 37 calls diffoscope.comparators.elf.ElfSection 0.224s 3 calls diffoscope.comparators.elf.ElfStringSection 0.077s 2 calls abc.TarFile 0.024s 1 call abc.TextFile 0.012s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection 0.011s 2 calls abc.Md5sumsFile ## container_extract (total time: 0.331s) 0.237s 18 calls diffoscope.comparators.xz.XzContainer 0.052s 68 calls diffoscope.comparators.deb.DebTarContainer 0.034s 22 calls diffoscope.comparators.deb.DebContainer 0.008s 16 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.028s) 0.028s 18 calls linediff ## has_same_content_as (total time: 0.009s) 0.006s 2 calls abc.DebDataTarFile 0.001s 4 calls abc.TextFile 0.000s 2 calls abc.ElfFile 0.000s 4 calls abc.Md5sumsFile 0.000s 3 calls diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 4 calls abc.XzFile 0.000s 37 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 1 call abc.DotChangesFile 0.000s 2 calls abc.DebFile 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 57.156s) 57.139s 2 calls outputs 0.017s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 18 calls diffoscope.comparators.xz.XzContainer 0.000s 12 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 0.116s) 0.115s 1 call html 0.001s 1 call text 0.001s 1 call json ## recognizes (total time: 0.403s) 0.137s 1638 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.123s 780 calls diffoscope.comparators.utils.archive.ArchiveMember 0.099s 12 calls diffoscope.comparators.binary.FilesystemFile 0.044s 216 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.115s) 0.115s 73 calls specialize Finished with result: success Main processes terminated with: code=exited/status=1 Service runtime: 57.566s CPU time consumed: 1min 9.341s Tue Jan 21 22:26:52 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Tue Jan 21 22:26:52 UTC 2025 E: mapsembler2 failed to build reproducibly in unstable on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-21 22:26:52] INFO: Starting at 2025-01-21 22:26:52.891406 [2025-01-21 22:26:52] INFO: Generating the pages of 1 package(s) [2025-01-21 22:26:53] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/mapsembler2 didn't produce a buildlog, even though it has been built. [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/mapsembler2_2.2.4+dfsg1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/mapsembler2_2.2.4+dfsg1-3.diff.gz is missing [2025-01-21 22:26:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/mapsembler2_2.2.4+dfsg1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/mapsembler2_2.2.4+dfsg1-3.diff.gz is missing [2025-01-21 22:26:53] INFO: Finished at 2025-01-21 22:26:53.496761, took: 0:00:00.605360 Tue Jan 21 22:26:53 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/mapsembler2.html Tue Jan 21 22:26:53 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 21 22:26:53 UTC 2025 I: Submitting 12K b1/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc https://buildinfo.debian.net/b1cfd69fc85e60f4e1bc6ccf5d7d000cdef6e288/mapsembler2_2.2.4+dfsg1-4_arm64 Tue Jan 21 22:26:54 UTC 2025 I: Submitting 12K b2/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc https://buildinfo.debian.net/f3d6898d0af31c0bee94226b4c49d1e84ffc36d7/mapsembler2_2.2.4+dfsg1-4_arm64 Tue Jan 21 22:26:55 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 21 22:26:55 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 21 22:26:55 UTC 2025 I: Removing signed mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc files: removed './b1/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc' removed './b2/mapsembler2_2.2.4+dfsg1-4_arm64.buildinfo.asc' 1737498415 arm64 unstable mapsembler2 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.rbuild.log: 92.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mapsembler2_2.2.4+dfsg1-4.rbuild.log.gz [2025-01-21 22:26:55] INFO: Starting at 2025-01-21 22:26:55.441307 [2025-01-21 22:26:55] INFO: Generating the pages of 1 package(s) [2025-01-21 22:26:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:55] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/mapsembler2_2.2.4+dfsg1-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/mapsembler2_2.2.4+dfsg1-4.diff.gz is missing [2025-01-21 22:26:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/mapsembler2_2.2.4+dfsg1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/mapsembler2_2.2.4+dfsg1-3.diff.gz is missing [2025-01-21 22:26:56] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/mapsembler2_2.2.4+dfsg1-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/mapsembler2_2.2.4+dfsg1-3.diff.gz is missing [2025-01-21 22:26:56] INFO: Finished at 2025-01-21 22:26:56.120618, took: 0:00:00.679316 All cleanup done. Tue Jan 21 22:26:56 UTC 2025 - total duration: 0h 8m 38s. Tue Jan 21 22:26:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-JPoIsEcb, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 41.334s CPU time consumed: 8.169s