Running as unit: rb-build-arm64_11-84896.service ==================================================================================== Fri Feb 21 19:42:20 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_11) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Fri Feb 21 19:42:20 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-8UurZ1VE" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 19:42:20 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Feb 21 19:42:20 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-DQhcpq' Fri Feb 21 19:42:20 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Feb 21 19:42:20 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1wJilA' ok, let's check if plasmidid is building anywhere yet… ok, plasmidid is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of plasmidid in bullseye on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Feb 21 19:42:38 UTC 2025 I: starting to build plasmidid/bullseye/arm64 on jenkins on '2025-02-21 19:42' Fri Feb 21 19:42:38 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_11/84896/console.log 1740166958 arm64 bullseye plasmidid Fri Feb 21 19:42:38 UTC 2025 I: Downloading source for bullseye/plasmidid=1.6.3+dfsg-3 --2025-02-21 19:42:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.3%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.3+dfsg-3.dsc’ 0K .. 100% 210M=0s 2025-02-21 19:42:38 (210 MB/s) - ‘plasmidid_1.6.3+dfsg-3.dsc’ saved [2224/2224] --2025-02-21 19:42:38-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.3%2bdfsg-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.3+dfsg-3.dsc’ 0K .. 100% 210M=0s 2025-02-21 19:42:38 (210 MB/s) - ‘plasmidid_1.6.3+dfsg-3.dsc’ saved [2224/2224] Fri Feb 21 19:42:38 UTC 2025 I: plasmidid_1.6.3+dfsg-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: plasmidid Binary: plasmidid Architecture: any Version: 1.6.3+dfsg-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: https://github.com/BU-ISCIII/plasmidID Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/plasmidid Vcs-Git: https://salsa.debian.org/med-team/plasmidid.git Build-Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+ , bedtools , bowtie2 , samtools , prokka , cd-hit , mash , circos Package-List: plasmidid deb science optional arch=any Checksums-Sha1: 97fbd918f53e3aeb32788efa1422e5589ddb3999 84777540 plasmidid_1.6.3+dfsg.orig.tar.xz af5aac26f9eeb234f7c3d0ab136888681dc793da 4156 plasmidid_1.6.3+dfsg-3.debian.tar.xz Checksums-Sha256: ed41afc9c31614e38a35d6347a0a39f39049828e572891a11872a4d7fb2f2c5c 84777540 plasmidid_1.6.3+dfsg.orig.tar.xz 4cf37b9b6987fe0479d4fe73ce48ab999f8a7c4a9311841c51fb0133f3d65c7f 4156 plasmidid_1.6.3+dfsg-3.debian.tar.xz Files: f8ac2a559c777531ecc662e6660aa894 84777540 plasmidid_1.6.3+dfsg.orig.tar.xz 2ebdfa411f5fd1e5b0487b51096aa862 4156 plasmidid_1.6.3+dfsg-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/8CfkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEbDQ/7BGp4EeVhBEkUw1MD8tcJRvNYIKOqB6rU JeEDUCUiz9YHFTmfRyGK74BJ5XjcmBZ2U+rPgVogFdOrWk4Zaq62EQ/bBSRCEXP5 LHlbwEVwyuGZWRgD7sl6pFEfjgqIsuITyJoW/z/DuQglj49A/Gxe00RYFuGe3UiN tOcaN5Jbm+hYUHFwdhK50s5ws2e4Xr4wGNQVpfaRiPP6ztoqQXYDfp5NkkZOBhm9 ml7CWKsb2xpBqda0BiMKh6TWtBwlvU/M9xF59/0XrPV20LEwEUgGNG2/Hoqug+sm 9SvMkRlATqObDDRMKLiDZ3xuUu6IeinqpsXMERZx2kzHcF6EGEAR28KvsBNWR9JN FOmoaCwqVX4hJa1XoeBkX5Cyun1RPH2q2f6MiUxg1GV5pi7sGklbHF7brk0FeAoP uVf0pHYK/ge/Yl9I0wj2l5T4EqQNvkRzUZqGSKhZUeYt/Lv+ziZErxb3Rojdq1CA 2c2WYu/xH58rFxp+Ts7byZ3l2fe3gacibFpWgqnQWJh79urKkE+vQLxXQhx96mAl Vjb0jdO6Vqpex3Cy0tmgagMgZY1FaPwdcMKqCbyQCi+xITenOuIrI3fGp+aOq5OY Dpw/1VqsAkbr5T40sDYC8WB28/d1HoZEMKM0vfzwwKv9WaWL0R58FN921Ph5YCRO d9su3K1vNIM= =/m95 -----END PGP SIGNATURE----- Fri Feb 21 19:42:38 UTC 2025 I: Checking whether the package is not for us Fri Feb 21 19:42:38 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Feb 21 19:42:38 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Feb 21 19:42:38 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Feb 21 19:42:38 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-u2NK0h' ==================================================================================== Fri Feb 21 19:42:40 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 plasmidid bullseye /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP 1.6.3+dfsg-3" as arguments. Fri Feb 21 19:42:40 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IbzakqUN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 19:42:40 UTC 2025 I: Downloading source for bullseye/plasmidid=1.6.3+dfsg-3 Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (dsc) [2224 B] Get:2 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (tar) [84.8 MB] Get:3 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (diff) [4156 B] Fetched 84.8 MB in 3s (25.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (dsc) [2224 B] Get:2 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (tar) [84.8 MB] Get:3 http://deb.debian.org/debian bullseye/main plasmidid 1.6.3+dfsg-3 (diff) [4156 B] Fetched 84.8 MB in 3s (25.0 MB/s) Download complete and in download only mode ============================================================================= Building plasmidid in bullseye on arm64 on codethink04-arm64 now. Date: Fri Feb 21 19:42:43 GMT 2025 Date UTC: Fri Feb 21 19:42:43 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 07:42:43 -12 2025 I: pbuilder-time-stamp: 1740166963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plasmidid_1.6.3+dfsg-3.dsc] I: copying [./plasmidid_1.6.3+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ByXccXo8/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 10 20:19:05 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plasmidid_1.6.3+dfsg-3.dsc dpkg-source: info: extracting plasmidid in plasmidid-1.6.3+dfsg dpkg-source: info: unpacking plasmidid_1.6.3+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3055047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='66b7838e30b5413ba7914a13e30571c2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3055047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/pbuilderrc_Ai5W --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/b1 --logfile b1/build.log plasmidid_1.6.3+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin total 5260 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Mar 27 2024 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 64856 Mar 27 2024 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 9 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Mar 27 2024 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Mar 27 2024 more -rwsr-xr-x 1 root root 51360 Mar 27 2024 mount -rwxr-xr-x 1 root root 14496 Mar 27 2024 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 6 21:23 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Mar 27 2024 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 543960 Jan 19 2024 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Mar 27 2024 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Mar 27 2024 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3055047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.7.0{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl25{a} libgslcblas0{a} libhts3{a} libicu67{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.4-2{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmpdec3{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libsigsegv2{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libtext-format-perl{a} libtiff5{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After unpacking 283 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: prokka which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.7.0{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl25{a} libgslcblas0{a} libhts3{a} libicu67{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.4-2{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmpdec3{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libsigsegv2{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libtext-format-perl{a} libtiff5{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After unpacking 283 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3055047 and its subdirectories Starting cleanup. All cleanup done. Fri Feb 21 19:42:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-IbzakqUN, removing. /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:42 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:42 b2 -rw-r--r-- 1 jenkins jenkins 2224 Jan 11 2021 plasmidid_1.6.3+dfsg-3.dsc -rw------- 1 jenkins jenkins 3386 Feb 21 19:42 rbuildlog.203ev6x /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/b1: total 20 -rw-r--r-- 1 jenkins jenkins 16839 Feb 21 19:42 build.log /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/b2: total 0 Fri Feb 21 19:42:59 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 07:42:43 -12 2025 I: pbuilder-time-stamp: 1740166963 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bullseye-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plasmidid_1.6.3+dfsg-3.dsc] I: copying [./plasmidid_1.6.3+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.3+dfsg-3.debian.tar.xz] I: Extracting source gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.ByXccXo8/trustedkeys.kbx': General error gpgv: Signature made Sun Jan 10 20:19:05 2021 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./plasmidid_1.6.3+dfsg-3.dsc dpkg-source: info: extracting plasmidid in plasmidid-1.6.3+dfsg dpkg-source: info: unpacking plasmidid_1.6.3+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.3+dfsg-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3055047/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all,-fixfilepath parallel=12 ' DISTRIBUTION='bullseye' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='66b7838e30b5413ba7914a13e30571c2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3055047' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/pbuilderrc_Ai5W --distribution bullseye --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bullseye-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.OwbUvmnP/b1 --logfile b1/build.log plasmidid_1.6.3+dfsg-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin total 5260 -rwxr-xr-x 1 root root 1282512 Mar 27 2022 bash -rwxr-xr-x 3 root root 34808 Jul 20 2020 bunzip2 -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzcat lrwxrwxrwx 1 root root 6 Jul 20 2020 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Jul 20 2020 bzdiff lrwxrwxrwx 1 root root 6 Jul 20 2020 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4877 Sep 4 2019 bzexe lrwxrwxrwx 1 root root 6 Jul 20 2020 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Jul 20 2020 bzgrep -rwxr-xr-x 3 root root 34808 Jul 20 2020 bzip2 -rwxr-xr-x 1 root root 14264 Jul 20 2020 bzip2recover lrwxrwxrwx 1 root root 6 Jul 20 2020 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Jul 20 2020 bzmore -rwxr-xr-x 1 root root 39832 Sep 22 2020 cat -rwxr-xr-x 1 root root 64512 Sep 22 2020 chgrp -rwxr-xr-x 1 root root 60368 Sep 22 2020 chmod -rwxr-xr-x 1 root root 64528 Sep 22 2020 chown -rwxr-xr-x 1 root root 138896 Sep 22 2020 cp -rwxr-xr-x 1 root root 129544 Dec 10 2020 dash -rwxr-xr-x 1 root root 101384 Sep 22 2020 date -rwxr-xr-x 1 root root 80984 Sep 22 2020 dd -rwxr-xr-x 1 root root 89824 Sep 22 2020 df -rwxr-xr-x 1 root root 143088 Sep 22 2020 dir -rwxr-xr-x 1 root root 76152 Mar 27 2024 dmesg lrwxrwxrwx 1 root root 8 Nov 6 2019 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Nov 6 2019 domainname -> hostname -rwxr-xr-x 1 root root 35632 Sep 22 2020 echo -rwxr-xr-x 1 root root 28 Jan 24 2023 egrep -rwxr-xr-x 1 root root 31512 Sep 22 2020 false -rwxr-xr-x 1 root root 28 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 64856 Mar 27 2024 findmnt -rwsr-xr-x 1 root root 34824 Feb 26 2021 fusermount -rwxr-xr-x 1 root root 182496 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93744 Apr 9 2022 gzip -rwxr-xr-x 1 root root 18440 Nov 6 2019 hostname -rwxr-xr-x 1 root root 68720 Sep 22 2020 ln -rwxr-xr-x 1 root root 52720 Feb 7 2020 login -rwxr-xr-x 1 root root 143088 Sep 22 2020 ls -rwxr-xr-x 1 root root 157864 Mar 27 2024 lsblk -rwxr-xr-x 1 root root 85200 Sep 22 2020 mkdir -rwxr-xr-x 1 root root 68744 Sep 22 2020 mknod -rwxr-xr-x 1 root root 43976 Sep 22 2020 mktemp -rwxr-xr-x 1 root root 51368 Mar 27 2024 more -rwsr-xr-x 1 root root 51360 Mar 27 2024 mount -rwxr-xr-x 1 root root 14496 Mar 27 2024 mountpoint -rwxr-xr-x 1 root root 134808 Sep 22 2020 mv lrwxrwxrwx 1 root root 8 Nov 6 2019 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Dec 16 2021 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 35720 Sep 22 2020 pwd lrwxrwxrwx 1 root root 4 Mar 27 2022 rbash -> bash -rwxr-xr-x 1 root root 43872 Sep 22 2020 readlink -rwxr-xr-x 1 root root 68592 Sep 22 2020 rm -rwxr-xr-x 1 root root 43880 Sep 22 2020 rmdir -rwxr-xr-x 1 root root 19208 Sep 27 2020 run-parts -rwxr-xr-x 1 root root 114016 Dec 22 2018 sed lrwxrwxrwx 1 root root 4 Feb 6 21:23 sh -> dash -rwxr-xr-x 1 root root 35656 Sep 22 2020 sleep -rwxr-xr-x 1 root root 72640 Sep 22 2020 stty -rwsr-xr-x 1 root root 67776 Mar 27 2024 su -rwxr-xr-x 1 root root 35672 Sep 22 2020 sync -rwxr-xr-x 1 root root 543960 Jan 19 2024 tar -rwxr-xr-x 1 root root 10568 Sep 27 2020 tempfile -rwxr-xr-x 1 root root 89120 Sep 22 2020 touch -rwxr-xr-x 1 root root 31512 Sep 22 2020 true -rwxr-xr-x 1 root root 14264 Feb 26 2021 ulockmgr_server -rwsr-xr-x 1 root root 30880 Mar 27 2024 umount -rwxr-xr-x 1 root root 35640 Sep 22 2020 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 143088 Sep 22 2020 vdir -rwxr-xr-x 1 root root 59584 Mar 27 2024 wdctl lrwxrwxrwx 1 root root 8 Nov 6 2019 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 5898 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8049 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/3055047/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19701 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.7.0{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl25{a} libgslcblas0{a} libhts3{a} libicu67{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.4-2{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmpdec3{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libsigsegv2{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libtext-format-perl{a} libtiff5{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After unpacking 283 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: prokka which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.7.0{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl25{a} libgslcblas0{a} libhts3{a} libicu67{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.4-2{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto3{a} libmbedtls12{a} libmbedx509-0{a} libmd0{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmpdec3{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.9-minimal{a} libpython3.9-stdlib{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libsigsegv2{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libtext-format-perl{a} libtiff5{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp6{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.9{a} python3.9-minimal{a} readline-common{a} samtools{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 134 newly installed, 0 to remove and 0 not upgraded. Need to get 69.9 MB of archives. After unpacking 283 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3055047 and its subdirectories plasmidid failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/arm64/plasmidid_1.6.3+dfsg-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/arm64/plasmidid_1.6.3+dfsg-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build1.log.gz' Fri Feb 21 19:43:00 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 73.5% -- replaced with stdout Fri Feb 21 19:43:00 UTC 2025 W: Downloading the build dependencies failed Fri Feb 21 19:43:00 UTC 2025 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Feb 21 19:43:00 UTC 2025 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-21 19:43:01] INFO: Starting at 2025-02-21 19:43:01.003586 [2025-02-21 19:43:01] INFO: Generating the pages of 1 package(s) [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:01] CRITICAL: https://tests.reproducible-builds.org/debian/bullseye/arm64/plasmidid didn't produce a buildlog, even though it has been built. [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2025-02-21 19:43:01] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2025-02-21 19:43:01] INFO: Finished at 2025-02-21 19:43:01.900958, took: 0:00:00.897377 Fri Feb 21 19:43:01 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bullseye/arm64/plasmidid.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/arm64/plasmidid_1.6.3+dfsg-3.rbuild.log: 69.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bullseye/arm64/plasmidid_1.6.3+dfsg-3.rbuild.log.gz [2025-02-21 19:43:02] INFO: Starting at 2025-02-21 19:43:02.321822 [2025-02-21 19:43:02] INFO: Generating the pages of 1 package(s) [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2025-02-21 19:43:03] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2025-02-21 19:43:03] INFO: Finished at 2025-02-21 19:43:03.577609, took: 0:00:01.255797 All cleanup done. Fri Feb 21 19:43:03 UTC 2025 - total duration: 0h 0m 40s. Fri Feb 21 19:43:03 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-8UurZ1VE, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 43.647s CPU time consumed: 6.084s