Running as unit: rb-build-arm64_12-121800.service; invocation ID: cdbfef0d5ae447a2854718bd17cdb20e ==================================================================================== Mon Sep 15 09:35:26 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Mon Sep 15 09:35:26 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-Ui2eDs5G" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 09:35:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Sep 15 09:35:26 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-0QWg4A' Mon Sep 15 09:35:27 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Sep 15 09:35:27 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-qCqAsX' ok, let's check if python-cutadapt is building anywhere yet… ok, python-cutadapt is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-cutadapt in forky on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Mon Sep 15 09:35:47 UTC 2025 I: starting to build python-cutadapt/forky/arm64 on jenkins on '2025-09-15 09:35' Mon Sep 15 09:35:47 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/121800/console.log 1757928947 arm64 forky python-cutadapt Mon Sep 15 09:35:47 UTC 2025 I: Downloading source for forky/python-cutadapt=4.7-2 --2025-09-15 09:35:48-- http://deb.debian.org/debian/pool/main/p/python-cutadapt/python-cutadapt_4.7-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2484 (2.4K) [text/prs.lines.tag] Saving to: ‘python-cutadapt_4.7-2.dsc’ 0K .. 100% 301M=0s 2025-09-15 09:35:48 (301 MB/s) - ‘python-cutadapt_4.7-2.dsc’ saved [2484/2484] --2025-09-15 09:35:48-- http://deb.debian.org/debian/pool/main/p/python-cutadapt/python-cutadapt_4.7-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2484 (2.4K) [text/prs.lines.tag] Saving to: ‘python-cutadapt_4.7-2.dsc’ 0K .. 100% 301M=0s 2025-09-15 09:35:48 (301 MB/s) - ‘python-cutadapt_4.7-2.dsc’ saved [2484/2484] Mon Sep 15 09:35:48 UTC 2025 I: python-cutadapt_4.7-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: python-cutadapt Binary: python3-cutadapt, cutadapt Architecture: any all Version: 4.7-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Kevin Murray , Steffen Moeller , Homepage: https://cutadapt.readthedocs.io/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-cutadapt Vcs-Git: https://salsa.debian.org/med-team/python-cutadapt.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest , python3-pytest-mock , python3-pytest-timeout , python3-xopen , python3-dnaio (>= 1.2.0) , cython3:native Package-List: cutadapt deb science optional arch=all python3-cutadapt deb python optional arch=any Checksums-Sha1: 68caaa5b5f0d2c96ce2ff738e6f00bb00710fae4 243405 python-cutadapt_4.7.orig.tar.gz 6dfbb1bbee6e2c416c4d2af28a38e5c015d5b875 8856 python-cutadapt_4.7-2.debian.tar.xz Checksums-Sha256: 1428d60b8bda27910172119a337e954d4f44550dd28688af139c734b6d479ecb 243405 python-cutadapt_4.7.orig.tar.gz 4e3292a2df91f2fe2a2362770aa59d002367a46c8c00e738007fdcc7b8e7182f 8856 python-cutadapt_4.7-2.debian.tar.xz Files: 94eeeb9c6c4703113e92ef4ffa6f0036 243405 python-cutadapt_4.7.orig.tar.gz 319e2e4e605f89de482c2ed8707f1304 8856 python-cutadapt_4.7-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYD4JIACgkQPCZ2P2xn 5uJWuA//RVzIp8i7PqkltA9hYh70/A1tmFCXTb7tWmosxhPbyO4H/dNXlNj/uHBG 1enUCqKVoyZb2t7hk/cP9B5WcwYhZVHl4o2IG/HGyFHvhCK8bLONsvVTfVAC5fyS ryxGE9bSiQUb4AH12h0BTRx6eSwVAmHdP8ICiD+NQszfnGoDksbKGjFV7GevJxl5 vIbvBYukKY4+ZnYVS9g7C680kIksQUDOZ509mBgQgSbvcTwr9JtK6nmHzlDAr7Jj +4FoWYp3v+ehe5niODlRgWp2YTBWl343iq1Mb1SCrV+B4vDcBDQ/55foOhrTIVp4 G9XZ28aEu/rl6p5eY80vzVYJqwh4GAu7sQUzSzQPBwbRlUU6xS8DGu85N/pkBGkt 9o7QSwtjhA2sWQADkg8XSQc/kJuIr8s7EeZUIptlnwdAue3xJ0cfjpLXJaisrvdK NXYZLRTryBNaHkpMg2uo9GmkoPSp7Dt/V4i8cRC5CE5NKGdbnElbLcJZ0Jk9OWIV 2euOFgdi/qXSwnBBfyR9Kc3wQ9vTLMgj/u711fnMS2LStM95qJAdABnWpXSNbbaQ +NNcLspLCANTkT8aPZqKZWF5Nk5Xyq1w82/VZZ+J8/DCer5aM3GoGk62TW7sc1Sf qmPSo62y/j7qEZg52oVdVeQ2noZPO61Tg0o7vVrZ9hS/MW2NvWQ= =chBJ -----END PGP SIGNATURE----- Mon Sep 15 09:35:48 UTC 2025 I: Checking whether the package is not for us Mon Sep 15 09:35:48 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Sep 15 09:35:48 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Sep 15 09:35:48 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Sep 15 09:35:48 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1v7yzA' ==================================================================================== Mon Sep 15 09:35:48 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 python-cutadapt forky /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL 4.7-2" as arguments. Mon Sep 15 09:35:48 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-brjGQsoM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 09:35:49 UTC 2025 I: Downloading source for forky/python-cutadapt=4.7-2 Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (13.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (13.1 MB/s) Download complete and in download only mode ============================================================================= Building python-cutadapt in forky on arm64 on codethink04-arm64 now. Date: Mon Sep 15 10:35:49 BST 2025 Date UTC: Mon Sep 15 09:35:49 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 21:35:49 -12 2025 I: pbuilder-time-stamp: 1757928949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1419774/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5907f62e4c6747b58704330cb5c53ac2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1419774' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_922G --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1419774/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal python3-pygments wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 61 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-dnaio arm64 1.2.3-1+b1 [73.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.14.1-1 [18.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-pytest-timeout all 2.4.0-1 [22.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-2 [41.3 kB] Fetched 30.0 MB in 0s (149 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Selecting previously unselected package python3-pytest-timeout. Preparing to unpack .../66-python3-pytest-timeout_2.4.0-1_all.deb ... Unpacking python3-pytest-timeout (2.4.0-1) ... Selecting previously unselected package python3-setuptools-scm. Preparing to unpack .../67-python3-setuptools-scm_8.2.1-2_all.deb ... Unpacking python3-setuptools-scm (8.2.1-2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.1-3) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Setting up libdebhelper-perl (13.26) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Sep 15 09:36:12 UTC 2025. Universal Time is now: Mon Sep 15 09:36:12 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up pigz (2.8-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-xopen (1.7.0-3) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-dnaio (1.2.3-1+b1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pytest-mock (3.14.1-1) ... Setting up python3-build (1.2.2-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-pytest-timeout (2.4.0-1) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-setuptools-scm (8.2.1-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-aarch64-cpython-313/src/cutadapt aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-zgolewmm/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_align.pyi' adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_kmer_finder.pyi' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/info.pyi' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/qualtrim.pyi' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/licenses/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.4.0, mock-3.14.1, typeguard-4.4.4 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 25.87s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/cutadapt/usr/bin/cutadapt dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_arm64.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1419774 and its subdirectories I: Current time: Sun Sep 14 21:37:22 -12 2025 I: pbuilder-time-stamp: 1757929042 Mon Sep 15 09:37:22 UTC 2025 I: Signing ./b1/python-cutadapt_4.7-2_arm64.buildinfo as python-cutadapt_4.7-2_arm64.buildinfo.asc Mon Sep 15 09:37:22 UTC 2025 I: Signed ./b1/python-cutadapt_4.7-2_arm64.buildinfo as ./b1/python-cutadapt_4.7-2_arm64.buildinfo.asc Mon Sep 15 09:37:22 UTC 2025 - build #1 for python-cutadapt/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Mon Sep 15 09:37:22 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-brjGQsoM, removing. /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:37 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:35 b2 -rw-rw-r-- 1 jenkins jenkins 2484 Mar 27 2024 python-cutadapt_4.7-2.dsc -rw------- 1 jenkins jenkins 3635 Sep 15 09:35 rbuildlog.ZMARTdn /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1: total 1000 -rw-r--r-- 1 jenkins jenkins 59492 Sep 15 09:37 build.log -rw-r--r-- 1 jenkins jenkins 25140 Sep 15 09:37 cutadapt_4.7-2_all.deb -rw-r--r-- 1 jenkins jenkins 8856 Sep 15 09:37 python-cutadapt_4.7-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2484 Sep 15 09:37 python-cutadapt_4.7-2.dsc -rw-r--r-- 1 jenkins jenkins 6836 Sep 15 09:37 python-cutadapt_4.7-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7718 Sep 15 09:37 python-cutadapt_4.7-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1894 Sep 15 09:37 python-cutadapt_4.7-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1366 Sep 15 09:37 python-cutadapt_4.7-2_source.changes -rw-r--r-- 1 jenkins jenkins 693008 Sep 15 09:37 python3-cutadapt-dbgsym_4.7-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 194864 Sep 15 09:37 python3-cutadapt_4.7-2_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b2: total 0 Mon Sep 15 09:37:23 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 21:35:49 -12 2025 I: pbuilder-time-stamp: 1757928949 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1419774/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='5907f62e4c6747b58704330cb5c53ac2' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1419774' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_922G --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1419774/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal python3-pygments wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 61 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-dnaio arm64 1.2.3-1+b1 [73.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.14.1-1 [18.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-pytest-timeout all 2.4.0-1 [22.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-2 [41.3 kB] Fetched 30.0 MB in 0s (149 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. 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Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-setuptools-scm (8.2.1-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-aarch64-cpython-313/src/cutadapt aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-zgolewmm/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_align.pyi' adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_kmer_finder.pyi' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/info.pyi' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/qualtrim.pyi' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/licenses/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.4.0, mock-3.14.1, typeguard-4.4.4 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 25.87s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/cutadapt/usr/bin/cutadapt dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_arm64.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1419774 and its subdirectories I: Current time: Sun Sep 14 21:37:22 -12 2025 I: pbuilder-time-stamp: 1757929042 Mon Sep 15 09:37:23 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Mon Sep 15 09:37:23 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Mon Sep 15 09:37:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Sep 15 09:37:23 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-BMTEhw' ==================================================================================== Sun Oct 18 16:00:24 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 python-cutadapt forky /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL 4.7-2" as arguments. Sun Oct 18 16:00:24 UTC 2026 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-xXAdlF50" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Oct 18 16:00:24 UTC 2026 I: Downloading source for forky/python-cutadapt=4.7-2 Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (18.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (18.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building python-cutadapt in forky on arm64 on codethink03-arm64 now. Date: Sun Oct 18 17:00:24 BST 2026 Date UTC: Sun Oct 18 16:00:24 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_sUFz + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-cutadapt = debian-installer -o python-cutadapt = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-cutadapt = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_sUFz --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b2 --logfile b2/build.log python-cutadapt_4.7-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Oct 19 06:00:24 +14 2026 I: pbuilder-time-stamp: 1792339224 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 18 16:00 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=f4aa65959d054c48bd0c125c59e8ffea LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3337857 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_sUFz --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b2 --logfile b2/build.log python-cutadapt_4.7-2.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal python3-pygments wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-2 [93.9 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.5-1 [10.4 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.5-1 [1068 B] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 61 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.5-1 [26.1 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.5-1 [1068 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-dnaio arm64 1.2.3-1+b1 [73.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.14.1-1 [18.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-pytest-timeout all 2.4.0-1 [22.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-2 [41.3 kB] Fetched 30.0 MB in 0s (60.8 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 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Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-setuptools-scm (8.2.1-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-aarch64-cpython-313/src/cutadapt aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-9vvqw4_b/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_align.pyi' adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_kmer_finder.pyi' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/info.pyi' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/qualtrim.pyi' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/licenses/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.4.0, mock-3.14.1, typeguard-4.4.4 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 59.89s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/cutadapt/usr/bin/cutadapt dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_arm64.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_arm64.deb'. dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3337857/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3337857 and its subdirectories I: Current time: Mon Oct 19 06:03:51 +14 2026 I: pbuilder-time-stamp: 1792339431 + false + set +x Sun Oct 18 16:03:51 UTC 2026 I: Signing ./b2/python-cutadapt_4.7-2_arm64.buildinfo as python-cutadapt_4.7-2_arm64.buildinfo.asc Sun Oct 18 16:03:51 UTC 2026 I: Signed ./b2/python-cutadapt_4.7-2_arm64.buildinfo as ./b2/python-cutadapt_4.7-2_arm64.buildinfo.asc Sun Oct 18 16:03:51 UTC 2026 - build #2 for python-cutadapt/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun Oct 18 16:03:51 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-xXAdlF50, removing. /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL: total 80 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:37 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:40 b2 -rw-rw-r-- 1 jenkins jenkins 2484 Mar 27 2024 python-cutadapt_4.7-2.dsc -rw------- 1 jenkins jenkins 63428 Sep 15 09:37 rbuildlog.ZMARTdn /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1: total 1012 -rw-r--r-- 1 jenkins jenkins 59492 Sep 15 09:37 build.log -rw-r--r-- 1 jenkins jenkins 25140 Sep 15 09:37 cutadapt_4.7-2_all.deb -rw-r--r-- 1 jenkins jenkins 8856 Sep 15 09:37 python-cutadapt_4.7-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2484 Sep 15 09:37 python-cutadapt_4.7-2.dsc -rw-r--r-- 1 jenkins jenkins 6836 Sep 15 09:37 python-cutadapt_4.7-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7718 Sep 15 09:37 python-cutadapt_4.7-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1894 Sep 15 09:37 python-cutadapt_4.7-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1366 Sep 15 09:37 python-cutadapt_4.7-2_source.changes -rw-r--r-- 1 jenkins jenkins 693008 Sep 15 09:37 python3-cutadapt-dbgsym_4.7-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 194864 Sep 15 09:37 python3-cutadapt_4.7-2_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b2: total 1000 -rw-rw-r-- 1 jenkins jenkins 61432 Sep 15 09:40 build.log -rw-r--r-- 1 jenkins jenkins 25140 Sep 15 09:40 cutadapt_4.7-2_all.deb -rw-r--r-- 1 jenkins jenkins 8856 Sep 15 09:40 python-cutadapt_4.7-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2484 Sep 15 09:40 python-cutadapt_4.7-2.dsc -rw-rw-r-- 1 jenkins jenkins 6836 Sep 15 09:40 python-cutadapt_4.7-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7718 Sep 15 09:40 python-cutadapt_4.7-2_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1894 Sep 15 09:40 python-cutadapt_4.7-2_arm64.changes -rw-rw-r-- 1 jenkins jenkins 1366 Sep 15 09:40 python-cutadapt_4.7-2_source.changes -rw-r--r-- 1 jenkins jenkins 693008 Sep 15 09:40 python3-cutadapt-dbgsym_4.7-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 194864 Sep 15 09:40 python3-cutadapt_4.7-2_arm64.deb Mon Sep 15 09:40:52 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Mon Sep 15 09:40:53 UTC 2025 I: python-cutadapt_4.7-2_arm64.changes: Format: 1.8 Date: Wed, 27 Mar 2024 10:00:57 +0100 Source: python-cutadapt Binary: cutadapt python3-cutadapt python3-cutadapt-dbgsym Architecture: all arm64 Version: 4.7-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: cutadapt - Clean biological sequences from high-throughput sequencing reads python3-cutadapt - Clean biological sequences from high-throughput sequencing reads Changes: python-cutadapt (4.7-2) unstable; urgency=medium . * Team upload. * d/control: need python3-dnaio of at least version 1.2. * Allow autopkgtests to be skipped if their dependencies are installable. Checksums-Sha1: 282ff4f9e7ea4acc38d3907c8d73c5b974d897f1 25140 cutadapt_4.7-2_all.deb 42c990bd414a4eadeb9b7f31390cbfbaa52ea3c9 6836 python-cutadapt_4.7-2_arm64.buildinfo 0769a2aaa3297fdcb74e0607501e1da65b76fcc0 693008 python3-cutadapt-dbgsym_4.7-2_arm64.deb f37287a1214f7610b7b794d37ceaa7e7d47e2e1b 194864 python3-cutadapt_4.7-2_arm64.deb Checksums-Sha256: 71890042b6e38626d9b0a896da0c03bda6efd48a60bf69e56b8633618f9eb8cf 25140 cutadapt_4.7-2_all.deb 8dee6cb4a5dc1f751b75b29b3ab1a2af5c7647ef56e1a8a9e4e808888a02aaa3 6836 python-cutadapt_4.7-2_arm64.buildinfo d090812702f19e1c87033ec22eef1832ad711411c801412f5fcc45a19cc6f142 693008 python3-cutadapt-dbgsym_4.7-2_arm64.deb 519be1f2e5b992cb1ccc59ac80cb0e9baa3dadf277112a8bbde17259619bdc81 194864 python3-cutadapt_4.7-2_arm64.deb Files: bc2c7015d6c57fbc55ded5b5a30c294d 25140 science optional cutadapt_4.7-2_all.deb 446def43f345f36282371393e80a7656 6836 python optional python-cutadapt_4.7-2_arm64.buildinfo 3eca00fb57a1c5494bfaf4aa63b62ff4 693008 debug optional python3-cutadapt-dbgsym_4.7-2_arm64.deb f85738eb37a6e08c6c1a2d99dfe31ce0 194864 python optional python3-cutadapt_4.7-2_arm64.deb 12,13c12,13 < bsdextrautils (= 2.41.1-3), < bsdutils (= 1:2.41.1-3), --- > bsdextrautils (= 2.41.1-2), > bsdutils (= 1:2.41.1-2), 60c60 < libblkid1 (= 2.41.1-3), --- > libblkid1 (= 2.41.1-2), 94c94 < liblastlog2-2 (= 2.41.1-3), --- > liblastlog2-2 (= 2.41.1-2), 100c100 < libmount1 (= 2.41.1-3), --- > libmount1 (= 2.41.1-2), 111,113c111,113 < libpython3-all-dev (= 3.13.7-1), < libpython3-dev (= 3.13.7-1), < libpython3-stdlib (= 3.13.7-1), --- > libpython3-all-dev (= 3.13.5-1), > libpython3-dev (= 3.13.5-1), > libpython3-stdlib (= 3.13.5-1), 122c122 < libsmartcols1 (= 2.41.1-3), --- > libsmartcols1 (= 2.41.1-2), 135c135 < libuuid1 (= 2.41.1-3), --- > libuuid1 (= 2.41.1-2), 155,157c155,157 < python3 (= 3.13.7-1), < python3-all (= 3.13.7-1), < python3-all-dev (= 3.13.7-1), --- > python3 (= 3.13.5-1), > python3-all (= 3.13.5-1), > python3-all-dev (= 3.13.5-1), 160c160 < python3-dev (= 3.13.7-1), --- > python3-dev (= 3.13.5-1), 168c168 < python3-minimal (= 3.13.7-1), --- > python3-minimal (= 3.13.5-1), 194c194 < util-linux (= 2.41.1-3), --- > util-linux (= 2.41.1-2), ============================================================================= Mon Sep 15 09:40:53 UTC 2025 - The installed build depends vary according to the two .buildinfo files, probably due to mirror updates. Doing the first build on codethink04-arm64.debian.net again. ============================================================================= Mon Sep 15 09:40:53 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Sep 15 09:40:53 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Sep 15 09:40:53 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-zpazC2' ==================================================================================== Mon Sep 15 09:40:54 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 python-cutadapt forky /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL 4.7-2" as arguments. Mon Sep 15 09:40:54 UTC 2025 - actually running "reproducible_build.sh" (md5sum cc591790ab2c8e13f5e554202b95c89c) as "/tmp/jenkins-script-FhLNx2uL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Sep 15 09:40:54 UTC 2025 I: Downloading source for forky/python-cutadapt=4.7-2 Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (14.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-cutadapt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-cutadapt.git Please use: git clone https://salsa.debian.org/med-team/python-cutadapt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 255 kB of source archives. Get:1 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (dsc) [2484 B] Get:2 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (tar) [243 kB] Get:3 http://deb.debian.org/debian forky/main python-cutadapt 4.7-2 (diff) [8856 B] Fetched 255 kB in 0s (14.1 MB/s) Download complete and in download only mode ============================================================================= Building python-cutadapt in forky on arm64 on codethink04-arm64 now. Date: Mon Sep 15 10:40:54 BST 2025 Date UTC: Mon Sep 15 09:40:54 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 21:40:54 -12 2025 I: pbuilder-time-stamp: 1757929254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1445754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='bd6e23a1933b4f42908f12a79e5de2ed' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1445754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_osmu --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1445754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal python3-pygments wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 61 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-dnaio arm64 1.2.3-1+b1 [73.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.14.1-1 [18.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-pytest-timeout all 2.4.0-1 [22.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-2 [41.3 kB] Fetched 30.0 MB in 0s (150 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.7-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.7-1_arm64.deb ... Unpacking python3.13-minimal (3.13.7-1) ... Setting up libpython3.13-minimal:arm64 (3.13.7-1) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.7-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20364 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21379 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. 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Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../26-libxml2-16_2.14.5+dfsg-0.2_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.5+dfsg-0.2) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.26_all.deb ... Unpacking debhelper (13.26) ... Selecting previously unselected package dh-python. Preparing to unpack .../31-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../32-libexpat1-dev_2.7.1-2_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.7.1-2) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../33-libjs-sphinxdoc_8.2.3-6_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-6) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../34-libpython3.13_3.13.7-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.7-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../35-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:arm64. Preparing to unpack .../36-libpython3.13-dev_3.13.7-1_arm64.deb ... Unpacking libpython3.13-dev:arm64 (3.13.7-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../37-libpython3-dev_3.13.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.13.7-1) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../38-libpython3-all-dev_3.13.7-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.13.7-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../39-python3-packaging_25.0-1_all.deb ... Unpacking python3-packaging (25.0-1) ... Selecting previously unselected package python3-pyproject-hooks. Preparing to unpack .../40-python3-pyproject-hooks_1.2.0-1_all.deb ... Unpacking python3-pyproject-hooks (1.2.0-1) ... Selecting previously unselected package python3-wheel. Preparing to unpack .../41-python3-wheel_0.46.1-2_all.deb ... Unpacking python3-wheel (0.46.1-2) ... Selecting previously unselected package python3-build. Preparing to unpack .../42-python3-build_1.2.2-4_all.deb ... Unpacking python3-build (1.2.2-4) ... Selecting previously unselected package python3-installer. Preparing to unpack .../43-python3-installer_0.7.0+dfsg1-3_all.deb ... Unpacking python3-installer (0.7.0+dfsg1-3) ... Selecting previously unselected package pybuild-plugin-pyproject. Preparing to unpack .../44-pybuild-plugin-pyproject_6.20250414_all.deb ... Unpacking pybuild-plugin-pyproject (6.20250414) ... Selecting previously unselected package python3-all. Preparing to unpack .../45-python3-all_3.13.7-1_arm64.deb ... Unpacking python3-all (3.13.7-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../46-python3.13-dev_3.13.7-1_arm64.deb ... Unpacking python3.13-dev (3.13.7-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../47-python3-dev_3.13.7-1_arm64.deb ... Unpacking python3-dev (3.13.7-1) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../48-python3-all-dev_3.13.7-1_arm64.deb ... Unpacking python3-all-dev (3.13.7-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../49-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-xopen. Preparing to unpack .../50-python3-xopen_1.7.0-3_all.deb ... Unpacking python3-xopen (1.7.0-3) ... Selecting previously unselected package python3-dnaio. Preparing to unpack .../51-python3-dnaio_1.2.3-1+b1_arm64.deb ... Unpacking python3-dnaio (1.2.3-1+b1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../52-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../53-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../54-python3-typeguard_4.4.4-1_all.deb ... 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Universal Time is now: Mon Sep 15 09:41:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up pigz (2.8-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-xopen (1.7.0-3) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-dnaio (1.2.3-1+b1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pytest-mock (3.14.1-1) ... Setting up python3-build (1.2.2-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-pytest-timeout (2.4.0-1) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-setuptools-scm (8.2.1-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-aarch64-cpython-313/src/cutadapt aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-6sy9a941/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_align.pyi' adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_kmer_finder.pyi' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/info.pyi' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/qualtrim.pyi' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/licenses/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.4.0, mock-3.14.1, typeguard-4.4.4 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 26.84s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/cutadapt/usr/bin/cutadapt dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_arm64.deb'. dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1445754 and its subdirectories I: Current time: Sun Sep 14 21:42:28 -12 2025 I: pbuilder-time-stamp: 1757929348 Mon Sep 15 09:42:28 UTC 2025 I: Signing ./b1/python-cutadapt_4.7-2_arm64.buildinfo as python-cutadapt_4.7-2_arm64.buildinfo.asc Mon Sep 15 09:42:28 UTC 2025 I: Signed ./b1/python-cutadapt_4.7-2_arm64.buildinfo as ./b1/python-cutadapt_4.7-2_arm64.buildinfo.asc Mon Sep 15 09:42:28 UTC 2025 - build #1 for python-cutadapt/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Mon Sep 15 09:42:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-FhLNx2uL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL: total 100 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:42 b1 drwxrwxr-x 2 jenkins jenkins 4096 Sep 15 09:40 b2 -rw-rw-r-- 1 jenkins jenkins 2484 Mar 27 2024 python-cutadapt_4.7-2.dsc -rw------- 1 jenkins jenkins 65574 Sep 15 09:40 rbuildlog.ZMARTdn -rw------- 1 jenkins jenkins 5489 Sep 15 09:40 tmp.GA97gxFHOU -rw------- 1 jenkins jenkins 5489 Sep 15 09:40 tmp.PemU4mdvRL /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1: total 1012 -rw-r--r-- 1 jenkins jenkins 59492 Sep 15 09:42 build.log -rw-r--r-- 1 jenkins jenkins 25140 Sep 15 09:42 cutadapt_4.7-2_all.deb -rw-r--r-- 1 jenkins jenkins 8856 Sep 15 09:42 python-cutadapt_4.7-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2484 Sep 15 09:42 python-cutadapt_4.7-2.dsc -rw-r--r-- 1 jenkins jenkins 6836 Sep 15 09:42 python-cutadapt_4.7-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7718 Sep 15 09:42 python-cutadapt_4.7-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1894 Sep 15 09:42 python-cutadapt_4.7-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1366 Sep 15 09:42 python-cutadapt_4.7-2_source.changes -rw-r--r-- 1 jenkins jenkins 693008 Sep 15 09:42 python3-cutadapt-dbgsym_4.7-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 194864 Sep 15 09:42 python3-cutadapt_4.7-2_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b2: total 1012 -rw-rw-r-- 1 jenkins jenkins 61432 Sep 15 09:40 build.log -rw-r--r-- 1 jenkins jenkins 25140 Sep 15 09:40 cutadapt_4.7-2_all.deb -rw-r--r-- 1 jenkins jenkins 8856 Sep 15 09:40 python-cutadapt_4.7-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2484 Sep 15 09:40 python-cutadapt_4.7-2.dsc -rw-rw-r-- 1 jenkins jenkins 6836 Sep 15 09:40 python-cutadapt_4.7-2_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7718 Sep 15 09:40 python-cutadapt_4.7-2_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1894 Sep 15 09:40 python-cutadapt_4.7-2_arm64.changes -rw-rw-r-- 1 jenkins jenkins 1366 Sep 15 09:40 python-cutadapt_4.7-2_source.changes -rw-r--r-- 1 jenkins jenkins 693008 Sep 15 09:40 python3-cutadapt-dbgsym_4.7-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 194864 Sep 15 09:40 python3-cutadapt_4.7-2_arm64.deb Mon Sep 15 09:42:28 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Sep 14 21:40:54 -12 2025 I: pbuilder-time-stamp: 1757929254 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-cutadapt_4.7-2.dsc] I: copying [./python-cutadapt_4.7.orig.tar.gz] I: copying [./python-cutadapt_4.7-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-cutadapt_4.7-2.dsc: no acceptable signature found dpkg-source: info: extracting python-cutadapt in python-cutadapt-4.7 dpkg-source: info: unpacking python-cutadapt_4.7.orig.tar.gz dpkg-source: info: unpacking python-cutadapt_4.7-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1445754/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='bd6e23a1933b4f42908f12a79e5de2ed' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1445754' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/pbuilderrc_osmu --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/b1 --logfile b1/build.log python-cutadapt_4.7-2.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.43+deb13-cloud-arm64 #1 SMP Debian 6.12.43-1 (2025-08-27) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1445754/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libpython3-all-dev, python3-all-dev:any, pybuild-plugin-pyproject, python3-setuptools, python3-setuptools-scm:native, python3-pytest, python3-pytest-mock, python3-pytest-timeout, python3-xopen, python3-dnaio (>= 1.2.0), cython3:native dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libpython3-all-dev; however: Package libpython3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev:any. pbuilder-satisfydepends-dummy depends on pybuild-plugin-pyproject; however: Package pybuild-plugin-pyproject is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm:native. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-mock; however: Package python3-pytest-mock is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest-timeout; however: Package python3-pytest-timeout is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. pbuilder-satisfydepends-dummy depends on python3-dnaio (>= 1.2.0); however: Package python3-dnaio is not installed. pbuilder-satisfydepends-dummy depends on cython3:native. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} pybuild-plugin-pyproject{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-build{a} python3-dev{a} python3-dnaio{a} python3-inflect{a} python3-iniconfig{a} python3-installer{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyproject-hooks{a} python3-pytest{a} python3-pytest-mock{a} python3-pytest-timeout{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xopen{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-isal python3-pygments wget 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 30.0 MB of archives. After unpacking 128 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libpython3.13-minimal arm64 3.13.7-1 [857 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 python3.13-minimal arm64 3.13.7-1 [2001 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 media-types all 13.0.0 [29.3 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 netbase all 6.5 [12.4 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 tzdata all 2025b-5 [260 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 libpython3.13-stdlib arm64 3.13.7-1 [1895 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 python3.13 arm64 3.13.7-1 [761 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.1-3 [98.1 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-1 [316 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 automake all 1:1.17-4 [862 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.26 [91.8 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-5 [540 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 38 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.5+dfsg-0.2 [582 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 debhelper all 13.26 [939 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libexpat1-dev arm64 2.7.1-2 [145 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libjs-sphinxdoc all 8.2.3-6 [27.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libpython3.13 arm64 3.13.7-1 [1978 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libpython3.13-dev arm64 3.13.7-1 [4924 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libpython3-all-dev arm64 3.13.7-1 [1068 B] Get: 54 http://deb.debian.org/debian forky/main arm64 python3-packaging all 25.0-1 [56.6 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 python3-pyproject-hooks all 1.2.0-1 [11.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 python3-wheel all 0.46.1-2 [21.7 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 python3-build all 1.2.2-4 [36.2 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 python3-installer all 0.7.0+dfsg1-3 [18.6 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 pybuild-plugin-pyproject all 6.20250414 [11.8 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 python3-all arm64 3.13.7-1 [1044 B] Get: 61 http://deb.debian.org/debian forky/main arm64 python3.13-dev arm64 3.13.7-1 [504 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 python3-all-dev arm64 3.13.7-1 [1068 B] Get: 64 http://deb.debian.org/debian forky/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 python3-xopen all 1.7.0-3 [16.8 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 python3-dnaio arm64 1.2.3-1+b1 [73.8 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 72 http://deb.debian.org/debian forky/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 78 http://deb.debian.org/debian forky/main arm64 python3-pluggy all 1.6.0-1 [27.1 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 python3-pytest-mock all 3.14.1-1 [18.4 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 python3-pytest-timeout all 2.4.0-1 [22.3 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 python3-setuptools-scm all 8.2.1-2 [41.3 kB] Fetched 30.0 MB in 0s (150 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20020 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package pigz. Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.13-minimal:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.7-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.7-1_arm64.deb ... Unpacking python3.13 (3.13.7-1) ... 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Universal Time is now: Mon Sep 15 09:41:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-2) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-6) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up pigz (2.8-1+b1) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-5) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.7-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.7-1) ... Setting up python3.13 (3.13.7-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-xopen (1.7.0-3) ... Setting up python3-packaging (25.0-1) ... Setting up python3-pyproject-hooks (1.2.0-1) ... Setting up libpython3.13-dev:arm64 (3.13.7-1) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up python3-installer (0.7.0+dfsg1-3) ... Setting up python3-pluggy (1.6.0-1) ... Setting up python3-dnaio (1.2.3-1+b1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.7-1) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-typeguard (4.4.4-1) ... Setting up python3-all (3.13.7-1) ... Setting up debhelper (13.26) ... Setting up python3-wheel (0.46.1-2) ... Setting up python3-inflect (7.5.0-1) ... Setting up libpython3-all-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pytest-mock (3.14.1-1) ... Setting up python3-build (1.2.2-4) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-all-dev (3.13.7-1) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-pytest-timeout (2.4.0-1) ... Setting up pybuild-plugin-pyproject (6.20250414) ... Setting up python3-setuptools-scm (8.2.1-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-cutadapt-4.7/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-cutadapt_4.7-2_source.changes dpkg-buildpackage: info: source package python-cutadapt dpkg-buildpackage: info: source version 4.7-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild dh_auto_build -O--buildsystem=pybuild I: pybuild plugin_pyproject:129: Building wheel for python3.13 with "build" module I: pybuild base:311: python3.13 -m build --skip-dependency-check --no-isolation --wheel --outdir /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt * Building wheel... /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:82: SetuptoolsDeprecationWarning: `project.license` as a TOML table is deprecated !! ******************************************************************************** Please use a simple string containing a SPDX expression for `project.license`. You can also use `project.license-files`. (Both options available on setuptools>=77.0.0). By 2026-Feb-18, you need to update your project and remove deprecated calls or your builds will no longer be supported. See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! corresp(dist, value, root_dir) /usr/lib/python3/dist-packages/setuptools/config/_apply_pyprojecttoml.py:61: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! dist._finalize_license_expression() /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: MIT License See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running bdist_wheel running build running build_py creating build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_version.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/utils.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/tokenizer.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/steps.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/statistics.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/runners.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/report.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/predicates.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/pipeline.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/parser.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/modifiers.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/log.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/kmer_heuristic.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/json.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/files.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/cli.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/align.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/adapters.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_match_tables.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__main__.py -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/__init__.py -> build/lib.linux-aarch64-cpython-313/cutadapt running egg_info creating src/cutadapt.egg-info writing src/cutadapt.egg-info/PKG-INFO writing dependency_links to src/cutadapt.egg-info/dependency_links.txt writing entry points to src/cutadapt.egg-info/entry_points.txt writing requirements to src/cutadapt.egg-info/requires.txt writing top-level names to src/cutadapt.egg-info/top_level.txt writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest file 'src/cutadapt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'CITATION' warning: no files found matching 'src/cutadapt/*.c' adding license file 'LICENSE' writing manifest file 'src/cutadapt.egg-info/SOURCES.txt' copying src/cutadapt/_align.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/_kmer_finder.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/info.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt copying src/cutadapt/qualtrim.pyi -> build/lib.linux-aarch64-cpython-313/cutadapt running build_ext Compiling src/cutadapt/_align.pyx because it changed. [1/1] Cythonizing src/cutadapt/_align.pyx building 'cutadapt._align' extension creating build/temp.linux-aarch64-cpython-313/src/cutadapt aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_align.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_align.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/qualtrim.pyx because it changed. [1/1] Cythonizing src/cutadapt/qualtrim.pyx building 'cutadapt.qualtrim' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/qualtrim.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/qualtrim.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-cutadapt-4.7/src/cutadapt/info.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling src/cutadapt/info.pyx because it changed. [1/1] Cythonizing src/cutadapt/info.pyx building 'cutadapt.info' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/info.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/info.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. Compiling src/cutadapt/_kmer_finder.pyx because it changed. [1/1] Cythonizing src/cutadapt/_kmer_finder.pyx building 'cutadapt._kmer_finder' extension aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c src/cutadapt/_kmer_finder.c -o build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-cutadapt-4.7=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/src/cutadapt/_kmer_finder.o -L/usr/lib/aarch64-linux-gnu -o build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. installing to build/bdist.linux-aarch64/wheel running install running install_lib creating build/bdist.linux-aarch64/wheel creating build/bdist.linux-aarch64/wheel/cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.cpython-313-aarch64-linux-gnu.so -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/qualtrim.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/info.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_kmer_finder.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_align.pyi -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__init__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/__main__.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_match_tables.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/adapters.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/align.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/cli.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/files.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/json.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/kmer_heuristic.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/log.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/modifiers.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/parser.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/pipeline.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/predicates.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/report.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/runners.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/statistics.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/steps.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/tokenizer.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/utils.py -> build/bdist.linux-aarch64/wheel/./cutadapt copying build/lib.linux-aarch64-cpython-313/cutadapt/_version.py -> build/bdist.linux-aarch64/wheel/./cutadapt running install_egg_info Copying src/cutadapt.egg-info to build/bdist.linux-aarch64/wheel/./cutadapt-4.7.egg-info running install_scripts creating build/bdist.linux-aarch64/wheel/cutadapt-4.7.dist-info/WHEEL creating '/build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/.tmp-6sy9a941/cutadapt-4.7-cp313-cp313-linux_aarch64.whl' and adding 'build/bdist.linux-aarch64/wheel' to it adding 'cutadapt/__init__.py' adding 'cutadapt/__main__.py' adding 'cutadapt/_align.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_align.pyi' adding 'cutadapt/_kmer_finder.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/_kmer_finder.pyi' adding 'cutadapt/_match_tables.py' adding 'cutadapt/_version.py' adding 'cutadapt/adapters.py' adding 'cutadapt/align.py' adding 'cutadapt/cli.py' adding 'cutadapt/files.py' adding 'cutadapt/info.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/info.pyi' adding 'cutadapt/json.py' adding 'cutadapt/kmer_heuristic.py' adding 'cutadapt/log.py' adding 'cutadapt/modifiers.py' adding 'cutadapt/parser.py' adding 'cutadapt/pipeline.py' adding 'cutadapt/predicates.py' adding 'cutadapt/qualtrim.cpython-313-aarch64-linux-gnu.so' adding 'cutadapt/qualtrim.pyi' adding 'cutadapt/report.py' adding 'cutadapt/runners.py' adding 'cutadapt/statistics.py' adding 'cutadapt/steps.py' adding 'cutadapt/tokenizer.py' adding 'cutadapt/utils.py' adding 'cutadapt-4.7.dist-info/licenses/LICENSE' adding 'cutadapt-4.7.dist-info/METADATA' adding 'cutadapt-4.7.dist-info/WHEEL' adding 'cutadapt-4.7.dist-info/entry_points.txt' adding 'cutadapt-4.7.dist-info/top_level.txt' adding 'cutadapt-4.7.dist-info/RECORD' removing build/bdist.linux-aarch64/wheel Successfully built cutadapt-4.7-cp313-cp313-linux_aarch64.whl I: pybuild plugin_pyproject:144: Unpacking wheel built for python3.13 with "installer" module dh_auto_test -O--buildsystem=pybuild I: pybuild base:311: cd /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build; python3.13 -m pytest -k 'not test_run_cutadapt_process' ============================= test session starts ============================== platform linux -- Python 3.13.7, pytest-8.3.5, pluggy-1.6.0 rootdir: /build/reproducible-path/python-cutadapt-4.7/.pybuild/cpython3_3.13_cutadapt/build configfile: pyproject.toml testpaths: tests plugins: timeout-2.4.0, mock-3.14.1, typeguard-4.4.4 collected 669 items / 1 deselected / 668 selected tests/test_adapters.py ......................................... [ 6%] tests/test_align.py .................................................... [ 13%] ... [ 14%] tests/test_api.py ...... [ 15%] tests/test_command.py ........... [ 16%] tests/test_commandline.py .............................................. [ 23%] ........................................................................ [ 34%] .............................................................. [ 43%] tests/test_files.py ......... [ 45%] tests/test_kmer_finder.py .................... [ 48%] tests/test_kmer_heuristic.py ............... [ 50%] tests/test_main.py .... [ 51%] tests/test_modifiers.py ....................................... [ 56%] tests/test_paired.py ................................................... [ 64%] ........................................................................ [ 75%] ....................................................... [ 83%] tests/test_parser.py ................................................. [ 90%] tests/test_predicates.py ................. [ 93%] tests/test_qualtrim.py ............................ [ 97%] tests/test_report.py .. [ 97%] tests/test_stats.py ... [ 98%] tests/test_testutils.py .. [ 98%] tests/test_tokenizer.py .. [ 98%] tests/test_trim.py ... [ 99%] tests/test_utils.py .... [100%] ====================== 668 passed, 1 deselected in 26.84s ====================== create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install -O--buildsystem=pybuild I: pybuild plugin_pyproject:178: Copying package built for python3.13 to destdir debian/rules execute_after_dh_install make[1]: Entering directory '/build/reproducible-path/python-cutadapt-4.7' mkdir -p debian/cutadapt/usr/bin mv debian/python3-cutadapt/usr/bin/cutadapt debian/cutadapt/usr/bin/ make[1]: Leaving directory '/build/reproducible-path/python-cutadapt-4.7' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/cutadapt/usr/bin/cutadapt dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package cutadapt: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-cutadapt' in '../python3-cutadapt_4.7-2_arm64.deb'. dpkg-deb: building package 'cutadapt' in '../cutadapt_4.7-2_all.deb'. dpkg-deb: building package 'python3-cutadapt-dbgsym' in '../python3-cutadapt-dbgsym_4.7-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-cutadapt_4.7-2_arm64.buildinfo dpkg-genchanges --build=binary -O../python-cutadapt_4.7-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1445754 and its subdirectories I: Current time: Sun Sep 14 21:42:28 -12 2025 I: pbuilder-time-stamp: 1757929348 12,13c12,13 < bsdextrautils (= 2.41.1-3), < bsdutils (= 1:2.41.1-3), --- > bsdextrautils (= 2.41.1-2), > bsdutils (= 1:2.41.1-2), 60c60 < libblkid1 (= 2.41.1-3), --- > libblkid1 (= 2.41.1-2), 94c94 < liblastlog2-2 (= 2.41.1-3), --- > liblastlog2-2 (= 2.41.1-2), 100c100 < libmount1 (= 2.41.1-3), --- > libmount1 (= 2.41.1-2), 111,113c111,113 < libpython3-all-dev (= 3.13.7-1), < libpython3-dev (= 3.13.7-1), < libpython3-stdlib (= 3.13.7-1), --- > libpython3-all-dev (= 3.13.5-1), > libpython3-dev (= 3.13.5-1), > libpython3-stdlib (= 3.13.5-1), 122c122 < libsmartcols1 (= 2.41.1-3), --- > libsmartcols1 (= 2.41.1-2), 135c135 < libuuid1 (= 2.41.1-3), --- > libuuid1 (= 2.41.1-2), 155,157c155,157 < python3 (= 3.13.7-1), < python3-all (= 3.13.7-1), < python3-all-dev (= 3.13.7-1), --- > python3 (= 3.13.5-1), > python3-all (= 3.13.5-1), > python3-all-dev (= 3.13.5-1), 160c160 < python3-dev (= 3.13.7-1), --- > python3-dev (= 3.13.5-1), 168c168 < python3-minimal (= 3.13.7-1), --- > python3-minimal (= 3.13.5-1), 194c194 < util-linux (= 2.41.1-3), --- > util-linux (= 2.41.1-2), UPDATE 1 Mon Sep 15 09:42:29 UTC 2025 - https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/121800/console.log encountered a problem: different packages were installed in the 1st+2nd builds and also in the 2nd+3rd build. -rw-r--r-- 1 jenkins jenkins 6836 Sep 15 09:42 ./b1/python-cutadapt_4.7-2_arm64.buildinfo on codethink04-arm64.debian.net -rw-rw-r-- 1 jenkins jenkins 6836 Sep 15 09:40 ./b2/python-cutadapt_4.7-2_arm64.buildinfo on codethink03-arm64.debian.net Starting cleanup. /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/rbuildlog.ZMARTdn: 81.7% -- replaced with /srv/reproducible-results/rbuild-debian/r-b-build.m4GFzeGL/rbuildlog.ZMARTdn.gz [2025-09-15 09:42:29] INFO: Starting at 2025-09-15 09:42:29.766962 [2025-09-15 09:42:29] INFO: Generating the pages of 1 package(s) [2025-09-15 09:42:30] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/python-cutadapt didn't produce a buildlog, even though it has been built. [2025-09-15 09:42:30] INFO: Finished at 2025-09-15 09:42:30.082684, took: 0:00:00.315729 All cleanup done. Mon Sep 15 09:42:30 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Ui2eDs5G, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 7min 3.492s CPU time consumed: 2.066s Memory peak: 42M (swap: 0B)