Running as unit: rb-build-arm64_12-127145.service; invocation ID: 72d5ff2718f34908a20a5657599607e1 ==================================================================================== Fri Oct 31 18:16:25 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Fri Oct 31 18:16:25 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-r0rAeizk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 18:16:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 18:16:25 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-3z4hQI' Fri Oct 31 18:16:26 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 18:16:26 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-YLTlep' ok, let's check if porechop is building anywhere yet… ok, porechop is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of porechop in experimental on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Oct 31 18:16:44 UTC 2025 I: starting to build porechop/experimental/arm64 on jenkins on '2025-10-31 18:16' Fri Oct 31 18:16:44 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/127145/console.log 1761934604 arm64 experimental porechop Fri Oct 31 18:16:44 UTC 2025 I: Downloading source for experimental/porechop=0.2.4+dfsg-8 --2025-10-31 18:16:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/porechop/porechop_0.2.4%2bdfsg-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2123 (2.1K) [text/prs.lines.tag] Saving to: ‘porechop_0.2.4+dfsg-8.dsc’ 0K .. 100% 126M=0s 2025-10-31 18:16:44 (126 MB/s) - ‘porechop_0.2.4+dfsg-8.dsc’ saved [2123/2123] --2025-10-31 18:16:44-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/porechop/porechop_0.2.4%2bdfsg-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2123 (2.1K) [text/prs.lines.tag] Saving to: ‘porechop_0.2.4+dfsg-8.dsc’ 0K .. 100% 126M=0s 2025-10-31 18:16:44 (126 MB/s) - ‘porechop_0.2.4+dfsg-8.dsc’ saved [2123/2123] Fri Oct 31 18:16:44 UTC 2025 I: porechop_0.2.4+dfsg-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: porechop Binary: porechop Architecture: any Version: 0.2.4+dfsg-8 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://rrwick.github.io/Porechop Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/porechop Vcs-Git: https://salsa.debian.org/med-team/porechop.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools Package-List: porechop deb science optional arch=any Checksums-Sha1: ca42641ad185404433d21282554185aa184bf437 726312 porechop_0.2.4+dfsg.orig.tar.xz 25eeaf244332732a7b189cbe7b16dac823083e51 7408 porechop_0.2.4+dfsg-8.debian.tar.xz Checksums-Sha256: 6d018c3c39777b36697cb1182ecaac9f981ee78c3660347fb83e52351cd79a2c 726312 porechop_0.2.4+dfsg.orig.tar.xz 49b839a70da071edfc4946ffee2560e8eb8cb8279bf5c3922e6596658d54d2db 7408 porechop_0.2.4+dfsg-8.debian.tar.xz Files: a09d363d707181eb1013200716142ad7 726312 porechop_0.2.4+dfsg.orig.tar.xz 2e3634a7a092c06c51a1a4e22c8fd641 7408 porechop_0.2.4+dfsg-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmdV/g0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtH8EA/+O9fhWj4x7GhTkhceZhlMYmHJXSZL8Wcu LMA5upgo6VwvQOCLnMUULy11ehGqXuumeIMURz60dlXcsB1a+i6f/3ctfI39GKl9 ISJEQzYDWpNdWr21oWZnMJyWf+ureGGYVzN2DMMib7chUvSnLzUlC0FxXiJsRcZi eXSNSHhHWkcXk2cI0IHyUIOk+eu2h3vrh4eH3zJ9T/ystKFAnZKelNjf5C9mOpk2 tlK13A6KIgjfv1z1VnH0JMfQb0divXn+nP0x7bGq/6hmFWix/HJrB3WHN94Hyhig kRP/B0VN9hgj238YpmpXPjDgrp7vU48yvs6o35F6FImosBGxA2WuutHmdU8X7RCP WquXyMrzsxL1QNHhqeT4C0+PDYung7Vfy/16XGDoxsjLKCCooQdTHkX74lEUstXa yDBWYDf/fbwTOC6dS94akLNJKLFNmJTCzdJcdwmcQPFBS3npVb7zZV8t7Jx3WmKV ZzcwnSC08Aa8Ozb0cHScCH2btCKYcn5YF08gWE1wsE0KJgfcKTwpwL2EM+yrYIXj +hN/kVm/Y94V1Usj9sTkWovSezUbLdR9wMKyAqihybuyUb6v9qwhFZ2HvFkq4kx1 wlPuDUnpkigwnF9a2TxOvsUmcG23Luhhdj5l4UxdjFxK/dU0zznr0N1cmYfaG+cb cMaKqJRLz2w= =WpoA -----END PGP SIGNATURE----- Fri Oct 31 18:16:44 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 18:16:44 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Oct 31 18:16:44 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Oct 31 18:16:44 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 18:16:44 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-W7Vpej' ==================================================================================== Fri Oct 31 18:16:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 porechop experimental /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6 0.2.4+dfsg-8" as arguments. Fri Oct 31 18:16:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-Gl9aDkFQ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 18:16:45 UTC 2025 I: Downloading source for experimental/porechop=0.2.4+dfsg-8 Reading package lists... NOTICE: 'porechop' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/porechop.git Please use: git clone https://salsa.debian.org/med-team/porechop.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 736 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (dsc) [2123 B] Get:2 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (tar) [726 kB] Get:3 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (diff) [7408 B] Fetched 736 kB in 0s (8072 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'porechop' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/porechop.git Please use: git clone https://salsa.debian.org/med-team/porechop.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 736 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (dsc) [2123 B] Get:2 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (tar) [726 kB] Get:3 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (diff) [7408 B] Fetched 736 kB in 0s (8072 kB/s) Download complete and in download only mode ============================================================================= Building porechop in experimental on arm64 on codethink04-arm64 now. Date: Fri Oct 31 18:16:45 GMT 2025 Date UTC: Fri Oct 31 18:16:45 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 06:16:45 -12 2025 I: pbuilder-time-stamp: 1761934605 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [porechop_0.2.4+dfsg-8.dsc] I: copying [./porechop_0.2.4+dfsg.orig.tar.xz] I: copying [./porechop_0.2.4+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./porechop_0.2.4+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting porechop in porechop-0.2.4+dfsg dpkg-source: info: unpacking porechop_0.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking porechop_0.2.4+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_python_interpreter_line.patch dpkg-source: info: applying no_soname.patch dpkg-source: info: applying define-all-attribute-in-clean.patch dpkg-source: info: applying 0004-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying hardening dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f97f05a91ad449fda241d45b8824468b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3953700' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_SfmR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1 --logfile b1/build.log porechop_0.2.4+dfsg-8.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libseqan2-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.9-1 [2055 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 51 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.9-1 [504 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 28.6 MB in 0s (81.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../38-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../39-python3.13-dev_3.13.9-1_arm64.deb ... Unpacking python3.13-dev (3.13.9-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../40-python3-dev_3.13.7-1_arm64.deb ... Unpacking python3-dev (3.13.7-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../41-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../42-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. 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Selecting previously unselected package python3-setuptools. Preparing to unpack .../49-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../50-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 18:17:03 UTC 2025. Universal Time is now: Fri Oct 31 18:17:03 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.9-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.9-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-8_source.changes dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-8 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean Deleting directory: /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_clean # Removing left .so files. find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/porechop/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' running install_lib creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/adapters.py to adapters.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/nanopore_read.py to nanopore_read.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/porechop.py to porechop.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/misc.py to misc.cpython-313.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' Copying porechop.egg-info to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop-0.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing porechop script to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_install mv -v debian/porechop/usr/bin/porechop-runner.py debian/porechop/usr/bin/porechop renamed 'debian/porechop/usr/bin/porechop-runner.py' -> 'debian/porechop/usr/bin/porechop' make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:114: replacing shebang in debian/porechop/usr/bin/porechop make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-8_arm64.deb'. dpkg-deb: building package 'porechop-dbgsym' in '../porechop-dbgsym_0.2.4+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../porechop_0.2.4+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../porechop_0.2.4+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3953700 and its subdirectories I: Current time: Fri Oct 31 06:17:28 -12 2025 I: pbuilder-time-stamp: 1761934648 Fri Oct 31 18:17:28 UTC 2025 I: Signing ./b1/porechop_0.2.4+dfsg-8_arm64.buildinfo as porechop_0.2.4+dfsg-8_arm64.buildinfo.asc Fri Oct 31 18:17:28 UTC 2025 I: Signed ./b1/porechop_0.2.4+dfsg-8_arm64.buildinfo as ./b1/porechop_0.2.4+dfsg-8_arm64.buildinfo.asc Fri Oct 31 18:17:28 UTC 2025 - build #1 for porechop/experimental/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 18:17:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Gl9aDkFQ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 18:17 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 18:16 b2 -rw-rw-r-- 1 jenkins jenkins 2123 Dec 8 2024 porechop_0.2.4+dfsg-8.dsc -rw------- 1 jenkins jenkins 3287 Oct 31 18:16 rbuildlog.lB7ig88 /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1: total 512 -rw-r--r-- 1 jenkins jenkins 46586 Oct 31 18:17 build.log -rw-r--r-- 1 jenkins jenkins 379448 Oct 31 18:17 porechop-dbgsym_0.2.4+dfsg-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 7408 Oct 31 18:17 porechop_0.2.4+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2123 Oct 31 18:17 porechop_0.2.4+dfsg-8.dsc -rw-r--r-- 1 jenkins jenkins 5933 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6815 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1472 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 54512 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1337 Oct 31 18:17 porechop_0.2.4+dfsg-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2: total 0 Fri Oct 31 18:17:29 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Oct 31 06:16:45 -12 2025 I: pbuilder-time-stamp: 1761934605 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [porechop_0.2.4+dfsg-8.dsc] I: copying [./porechop_0.2.4+dfsg.orig.tar.xz] I: copying [./porechop_0.2.4+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./porechop_0.2.4+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting porechop in porechop-0.2.4+dfsg dpkg-source: info: unpacking porechop_0.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking porechop_0.2.4+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_python_interpreter_line.patch dpkg-source: info: applying no_soname.patch dpkg-source: info: applying define-all-attribute-in-clean.patch dpkg-source: info: applying 0004-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying hardening dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='f97f05a91ad449fda241d45b8824468b' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3953700' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_SfmR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1 --logfile b1/build.log porechop_0.2.4+dfsg-8.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libseqan2-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.9-1 [2055 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 51 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.9-1 [504 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 28.6 MB in 0s (81.5 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21313 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. 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Current default time zone: 'Etc/UTC' Local time is now: Fri Oct 31 18:17:03 UTC 2025. Universal Time is now: Fri Oct 31 18:17:03 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.9-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.9-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-8_source.changes dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-8 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean Deleting directory: /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_clean # Removing left .so files. find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/porechop/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' running install_lib creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/adapters.py to adapters.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/nanopore_read.py to nanopore_read.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/porechop.py to porechop.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/misc.py to misc.cpython-313.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' Copying porechop.egg-info to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop-0.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing porechop script to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_install mv -v debian/porechop/usr/bin/porechop-runner.py debian/porechop/usr/bin/porechop renamed 'debian/porechop/usr/bin/porechop-runner.py' -> 'debian/porechop/usr/bin/porechop' make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:114: replacing shebang in debian/porechop/usr/bin/porechop make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-8_arm64.deb'. dpkg-deb: building package 'porechop-dbgsym' in '../porechop-dbgsym_0.2.4+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../porechop_0.2.4+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../porechop_0.2.4+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3953700 and its subdirectories I: Current time: Fri Oct 31 06:17:28 -12 2025 I: pbuilder-time-stamp: 1761934648 Fri Oct 31 18:17:30 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Oct 31 18:17:30 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Oct 31 18:17:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 18:17:30 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-LMw0in' ==================================================================================== Fri Dec 4 00:40:30 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 porechop experimental /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6 0.2.4+dfsg-8" as arguments. Fri Dec 4 00:40:30 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-4bqmLvbX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 00:40:30 UTC 2026 I: Downloading source for experimental/porechop=0.2.4+dfsg-8 Reading package lists... NOTICE: 'porechop' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/porechop.git Please use: git clone https://salsa.debian.org/med-team/porechop.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 736 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (dsc) [2123 B] Get:2 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (tar) [726 kB] Get:3 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (diff) [7408 B] Fetched 736 kB in 0s (38.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'porechop' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/porechop.git Please use: git clone https://salsa.debian.org/med-team/porechop.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 736 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (dsc) [2123 B] Get:2 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (tar) [726 kB] Get:3 http://deb.debian.org/debian experimental/main porechop 0.2.4+dfsg-8 (diff) [7408 B] Fetched 736 kB in 0s (38.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building porechop in experimental on arm64 on codethink03-arm64 now. Date: Fri Dec 4 00:40:31 GMT 2026 Date UTC: Fri Dec 4 00:40:31 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_mEzd + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' porechop = debian-installer -o porechop = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' porechop = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_mEzd --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2 --logfile b2/build.log porechop_0.2.4+dfsg-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 14:40:31 +14 2026 I: pbuilder-time-stamp: 1796344831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [porechop_0.2.4+dfsg-8.dsc] I: copying [./porechop_0.2.4+dfsg.orig.tar.xz] I: copying [./porechop_0.2.4+dfsg-8.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./porechop_0.2.4+dfsg-8.dsc: no acceptable signature found dpkg-source: info: extracting porechop in porechop-0.2.4+dfsg dpkg-source: info: unpacking porechop_0.2.4+dfsg.orig.tar.xz dpkg-source: info: unpacking porechop_0.2.4+dfsg-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying add_python_interpreter_line.patch dpkg-source: info: applying no_soname.patch dpkg-source: info: applying define-all-attribute-in-clean.patch dpkg-source: info: applying 0004-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying hardening dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 4 00:40 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=acc07349002043a4be3d571329786507 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3414317 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_mEzd --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2 --logfile b2/build.log porechop_0.2.4+dfsg-8.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, libseqan2-dev (= 2.5.0~rc3+dfsg-1), python3-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libjs-sphinxdoc{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libseqan2-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 64 newly installed, 0 to remove and 0 not upgraded. Need to get 28.6 MB of archives. After unpacking 129 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 36 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20250414 [116 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.7.3-1 [150 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 8.2.3-8 [27.6 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libpython3.13 arm64 3.13.9-1 [2055 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libpython3.13-dev arm64 3.13.9-1 [5057 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.13.7-1 [10.5 kB] Get: 51 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3.13-dev arm64 3.13.9-1 [504 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.13.7-1 [26.1 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.8.0-1 [71.7 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.15.0-1 [92.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.4-1 [37.1 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.5.0-1 [33.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Fetched 28.6 MB in 0s (64.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21313 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.194-1_arm64.deb ... Unpacking libelf1t64:arm64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../25-libxml2-16_2.15.1+dfsg-0.3_arm64.deb ... Unpacking libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package dh-python. Preparing to unpack .../30-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../31-libexpat1-dev_2.7.3-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.7.3-1) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../32-libjs-sphinxdoc_8.2.3-8_all.deb ... Unpacking libjs-sphinxdoc (8.2.3-8) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../33-libpython3.13_3.13.9-1_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.9-1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../34-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.13-dev:arm64. Preparing to unpack .../35-libpython3.13-dev_3.13.9-1_arm64.deb ... Unpacking libpython3.13-dev:arm64 (3.13.9-1) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../36-libpython3-dev_3.13.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.13.7-1) ... Selecting previously unselected package libseqan2-dev. Preparing to unpack .../37-libseqan2-dev_2.5.0~rc3+dfsg-1_all.deb ... Unpacking libseqan2-dev (2.5.0~rc3+dfsg-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../38-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../39-python3.13-dev_3.13.9-1_arm64.deb ... Unpacking python3.13-dev (3.13.9-1) ... Selecting previously unselected package python3-dev. Preparing to unpack .../40-python3-dev_3.13.7-1_arm64.deb ... Unpacking python3-dev (3.13.7-1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../41-python3-more-itertools_10.8.0-1_all.deb ... Unpacking python3-more-itertools (10.8.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../42-python3-typing-extensions_4.15.0-1_all.deb ... Unpacking python3-typing-extensions (4.15.0-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../43-python3-typeguard_4.4.4-1_all.deb ... Unpacking python3-typeguard (4.4.4-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../44-python3-inflect_7.5.0-1_all.deb ... Unpacking python3-inflect (7.5.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../45-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../46-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../47-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../48-python3-zipp_3.23.0-1_all.deb ... Unpacking python3-zipp (3.23.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../49-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../50-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libseqan2-dev (2.5.0~rc3+dfsg-1) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 4 00:40:52 UTC 2026. Universal Time is now: Fri Dec 4 00:40:52 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.3-1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libjs-sphinxdoc (8.2.3-8) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up netbase (6.5) ... Setting up readline-common (8.3-3) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libpython3.13:arm64 (3.13.9-1) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.7-1) ... Setting up python3-zipp (3.23.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.9-1) ... Setting up python3-typing-extensions (4.15.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.8.0-1) ... Setting up libpython3-dev:arm64 (3.13.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3.13-dev (3.13.9-1) ... Setting up python3-typeguard (4.4.4-1) ... Setting up debhelper (13.28) ... Setting up python3-inflect (7.5.0-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.7-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-setuptools (78.1.1-0.1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-8_source.changes dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-8 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean running clean Deleting directory: /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_clean # Removing left .so files. find . -name "*.so" -delete make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' debian/rules binary dh binary --buildsystem pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_py creating /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop copying porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/porechop/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py Cleaning previous compilation: make clean make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' rm -f porechop/src/alignment.o porechop/src/adapter_align.o make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' Compiling Porechop: make -j 8 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/alignment.o porechop/src/alignment.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o porechop/src/adapter_align.o porechop/src/adapter_align.cpp g++ -std=c++17 -Iporechop/include -fPIC -O3 -D NDEBUG -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/porechop-0.2.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -shared -o porechop/cpp_functions.so porechop/src/alignment.o porechop/src/adapter_align.o /usr/lib/gcc/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' running install_lib creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages creating /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/__init__.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/adapters.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/cpp_function_wrappers.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/nanopore_read.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/version.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/porechop.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop copying /build/reproducible-path/porechop-0.2.4+dfsg/.pybuild/cpython3_3.13/build/porechop/misc.py -> /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/adapters.py to adapters.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/cpp_function_wrappers.py to cpp_function_wrappers.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/nanopore_read.py to nanopore_read.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/version.py to version.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/porechop.py to porechop.cpython-313.pyc byte-compiling /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop/misc.py to misc.cpython-313.pyc running install_egg_info running egg_info creating porechop.egg-info writing porechop.egg-info/PKG-INFO writing dependency_links to porechop.egg-info/dependency_links.txt writing entry points to porechop.egg-info/entry_points.txt writing top-level names to porechop.egg-info/top_level.txt writing manifest file 'porechop.egg-info/SOURCES.txt' reading manifest file 'porechop.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' adding license file 'LICENSE' writing manifest file 'porechop.egg-info/SOURCES.txt' Copying porechop.egg-info to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/lib/python3.13/dist-packages/porechop-0.2.4.egg-info Skipping SOURCES.txt running install_scripts Installing porechop script to /build/reproducible-path/porechop-0.2.4+dfsg/debian/porechop/usr/bin debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_install mv -v debian/porechop/usr/bin/porechop-runner.py debian/porechop/usr/bin/porechop renamed 'debian/porechop/usr/bin/porechop-runner.py' -> 'debian/porechop/usr/bin/porechop' make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild debian/rules override_dh_python3 make[1]: Entering directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_python3 --no-ext-rename I: dh_python3 tools:114: replacing shebang in debian/porechop/usr/bin/porechop make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'porechop-dbgsym' in '../porechop-dbgsym_0.2.4+dfsg-8_arm64.deb'. dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../porechop_0.2.4+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../porechop_0.2.4+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3414317 and its subdirectories I: Current time: Fri Dec 4 14:41:20 +14 2026 I: pbuilder-time-stamp: 1796344880 + false + set +x Fri Dec 4 00:41:20 UTC 2026 I: Signing ./b2/porechop_0.2.4+dfsg-8_arm64.buildinfo as porechop_0.2.4+dfsg-8_arm64.buildinfo.asc Fri Dec 4 00:41:20 UTC 2026 I: Signed ./b2/porechop_0.2.4+dfsg-8_arm64.buildinfo as ./b2/porechop_0.2.4+dfsg-8_arm64.buildinfo.asc Fri Dec 4 00:41:20 UTC 2026 - build #2 for porechop/experimental/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 4 00:41:20 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-4bqmLvbX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6: total 68 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 18:17 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 18:18 b2 -rw-rw-r-- 1 jenkins jenkins 2123 Dec 8 2024 porechop_0.2.4+dfsg-8.dsc -rw------- 1 jenkins jenkins 50174 Oct 31 18:17 rbuildlog.lB7ig88 /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1: total 520 -rw-r--r-- 1 jenkins jenkins 46586 Oct 31 18:17 build.log -rw-r--r-- 1 jenkins jenkins 379448 Oct 31 18:17 porechop-dbgsym_0.2.4+dfsg-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 7408 Oct 31 18:17 porechop_0.2.4+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2123 Oct 31 18:17 porechop_0.2.4+dfsg-8.dsc -rw-r--r-- 1 jenkins jenkins 5933 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6815 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1472 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 54512 Oct 31 18:17 porechop_0.2.4+dfsg-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1337 Oct 31 18:17 porechop_0.2.4+dfsg-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2: total 512 -rw-rw-r-- 1 jenkins jenkins 48618 Oct 31 18:18 build.log -rw-r--r-- 1 jenkins jenkins 379448 Oct 31 18:18 porechop-dbgsym_0.2.4+dfsg-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 7408 Oct 31 18:18 porechop_0.2.4+dfsg-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2123 Oct 31 18:18 porechop_0.2.4+dfsg-8.dsc -rw-rw-r-- 1 jenkins jenkins 5941 Oct 31 18:18 porechop_0.2.4+dfsg-8_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 6823 Oct 31 18:18 porechop_0.2.4+dfsg-8_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1472 Oct 31 18:18 porechop_0.2.4+dfsg-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 54512 Oct 31 18:18 porechop_0.2.4+dfsg-8_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1337 Oct 31 18:18 porechop_0.2.4+dfsg-8_source.changes Fri Oct 31 18:18:21 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Oct 31 18:18:22 UTC 2025 I: porechop_0.2.4+dfsg-8_arm64.changes: Format: 1.8 Date: Sun, 08 Dec 2024 21:07:46 +0100 Source: porechop Binary: porechop porechop-dbgsym Architecture: arm64 Version: 0.2.4+dfsg-8 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: porechop - adapter trimmer for Oxford Nanopore reads Closes: 1085786 Changes: porechop (0.2.4+dfsg-8) experimental; urgency=medium . * Fix Python3.12 string syntax Closes: #1085786 * Build-Depends: s/dh-python/dh-sequence-python3/ Checksums-Sha1: f40c88c999f9e0c9d3dd7f92db669ac8bca5086c 379448 porechop-dbgsym_0.2.4+dfsg-8_arm64.deb 89bdfce24241735bb0fa9e63c689e1f267d23bfd 5933 porechop_0.2.4+dfsg-8_arm64.buildinfo 529ced05d7881bc8edfc34604ddce7b95cd7353b 54512 porechop_0.2.4+dfsg-8_arm64.deb Checksums-Sha256: 4a12e5f4b3fd398a79faac0011babca0231a484d22ffa60d7ae1479e01e311fd 379448 porechop-dbgsym_0.2.4+dfsg-8_arm64.deb ab87f48a3843d41e8a4694bcd972122c31990b5173183c3008045466ce50e586 5933 porechop_0.2.4+dfsg-8_arm64.buildinfo 4519d0f29dee2c575118b79d85faf9a14c8f87148c0bddb38ab1d8df7eaddcfd 54512 porechop_0.2.4+dfsg-8_arm64.deb Files: e3313a41cafe3f4799d57e9c5b34785f 379448 debug optional porechop-dbgsym_0.2.4+dfsg-8_arm64.deb e66668fd9efbd6d37cfe092a3e7fa68f 5933 science optional porechop_0.2.4+dfsg-8_arm64.buildinfo 5699aa937e399d22ff36f5790d6225ce 54512 science optional porechop_0.2.4+dfsg-8_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/porechop_0.2.4+dfsg-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/porechop_0.2.4+dfsg-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/porechop_0.2.4+dfsg-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/porechop_0.2.4+dfsg-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/arm64/porechop_0.2.4+dfsg-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/porechop_0.2.4+dfsg-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 18:17:29.462270391 +0000 +++ b2/build.log 2025-10-31 18:18:21.282333782 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Oct 31 06:16:45 -12 2025 -I: pbuilder-time-stamp: 1761934605 +I: Current time: Fri Dec 4 14:40:31 +14 2026 +I: pbuilder-time-stamp: 1796344831 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -29,53 +29,85 @@ dpkg-source: info: applying python3.12-syntax.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 4 00:40 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='f97f05a91ad449fda241d45b8824468b' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3953700' - PS1='# ' - PS2='> ' + INVOCATION_ID=acc07349002043a4be3d571329786507 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3414317 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_SfmR --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1 --logfile b1/build.log porechop_0.2.4+dfsg-8.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/pbuilderrc_mEzd --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2 --logfile b2/build.log porechop_0.2.4+dfsg-8.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3953700/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -198,7 +230,7 @@ Get: 62 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.23.0-1 [11.0 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] -Fetched 28.6 MB in 0s (81.5 MB/s) +Fetched 28.6 MB in 0s (64.0 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -419,8 +451,8 @@ Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Oct 31 18:17:03 UTC 2025. -Universal Time is now: Fri Oct 31 18:17:03 UTC 2025. +Local time is now: Fri Dec 4 00:40:52 UTC 2026. +Universal Time is now: Fri Dec 4 00:40:52 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -481,7 +513,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-8_source.changes +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/porechop-0.2.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../porechop_0.2.4+dfsg-8_source.changes dpkg-buildpackage: info: source package porechop dpkg-buildpackage: info: source version 0.2.4+dfsg-8 dpkg-buildpackage: info: source distribution experimental @@ -535,7 +571,7 @@ /lib/aarch64-linux-gnu/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. /lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking. make[1]: Leaving directory '/build/reproducible-path/porechop-0.2.4+dfsg' - dh_auto_test -O--buildsystem=pybuild +dh: command-omitted: The call to "dh_auto_test -O--buildsystem=pybuild" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild @@ -638,8 +674,8 @@ dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-8_arm64.deb'. dpkg-deb: building package 'porechop-dbgsym' in '../porechop-dbgsym_0.2.4+dfsg-8_arm64.deb'. +dpkg-deb: building package 'porechop' in '../porechop_0.2.4+dfsg-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../porechop_0.2.4+dfsg-8_arm64.buildinfo dpkg-genchanges --build=binary -O../porechop_0.2.4+dfsg-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -647,12 +683,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3414317/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3953700 and its subdirectories -I: Current time: Fri Oct 31 06:17:28 -12 2025 -I: pbuilder-time-stamp: 1761934648 +I: removing directory /srv/workspace/pbuilder/3414317 and its subdirectories +I: Current time: Fri Dec 4 14:41:20 +14 2026 +I: pbuilder-time-stamp: 1796344880 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/porechop_0.2.4+dfsg-8.diff: 67.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/porechop_0.2.4+dfsg-8.diff.gz b2/build.log: 81.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.5% -- replaced with stdout Fri Oct 31 18:18:22 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_porechop_experimental_arm64_1761934702 + touch /var/log/reproducible-builds/diffoscope_stamp_porechop_experimental_arm64_1761934702 + RESULT=0 + systemd-run '--description=diffoscope on porechop/0.2.4+dfsg-8 in experimental/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_12-127145 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6 --run-session -c jenkins-reproducible-unstable-diffoscope-3d54295e-61c5-4189-9b87-b0dff8b9a9ad -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/dbd-tmp-8uZ6j35 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1/porechop_0.2.4+dfsg-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2/porechop_0.2.4+dfsg-8_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_12-127145.service; invocation ID: df94354881d74f6587f2a928d7b815be # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/porechop_0.2.4+dfsg-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b1/porechop_0.2.4+dfsg-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ZWpEuZk6/b2/porechop_0.2.4+dfsg-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 226ms CPU time consumed: 179ms Memory peak: 17.6M (swap: 0B) _ _ __ ___ _ __ ___ ___| |__ ___ _ __ | '_ \ / _ \| '__/ _ \/ __| '_ \ / _ \| '_ \ | |_) | (_) | | | __/ (__| | | | (_) | |_) | | .__/ \___/|_| \___|\___|_| |_|\___/| .__/ |_| |_| Fri Oct 31 18:18:23 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 18:18:23 UTC 2025 I: porechop from experimental built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 18:18:23] INFO: Starting at 2025-10-31 18:18:23.731918 [2025-10-31 18:18:23] INFO: Generating the pages of 1 package(s) [2025-10-31 18:18:24] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/arm64/porechop didn't produce a buildlog, even though it has been built. [2025-10-31 18:18:24] INFO: Finished at 2025-10-31 18:18:24.011971, took: 0:00:00.280056 Fri Oct 31 18:18:24 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/arm64/porechop.html Fri Oct 31 18:18:24 UTC 2025 I: Removing signed porechop_0.2.4+dfsg-8_arm64.buildinfo.asc files: removed './b1/porechop_0.2.4+dfsg-8_arm64.buildinfo.asc' removed './b2/porechop_0.2.4+dfsg-8_arm64.buildinfo.asc' 1761934704 arm64 experimental porechop Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/porechop_0.2.4+dfsg-8.rbuild.log: 79.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/porechop_0.2.4+dfsg-8.rbuild.log.gz [2025-10-31 18:18:24] INFO: Starting at 2025-10-31 18:18:24.342785 [2025-10-31 18:18:24] INFO: Generating the pages of 1 package(s) [2025-10-31 18:18:24] INFO: Finished at 2025-10-31 18:18:24.540356, took: 0:00:00.197574 All cleanup done. Fri Oct 31 18:18:24 UTC 2025 - total duration: 0h 1m 58s. Fri Oct 31 18:18:24 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-r0rAeizk, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 59.080s CPU time consumed: 2.732s Memory peak: 41.7M (swap: 0B)