Running as unit: rb-build-arm64_12-70240.service ==================================================================================== Mon Nov 25 08:07:25 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Mon Nov 25 08:07:25 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-zWIfuDPu" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 08:07:25 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Nov 25 08:07:25 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-iDudvL' Mon Nov 25 08:07:26 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Nov 25 08:07:26 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-X9obsM' ok, let's check if plasmidid is building anywhere yet… ok, plasmidid is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of plasmidid in bookworm on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Mon Nov 25 08:07:34 UTC 2024 I: starting to build plasmidid/bookworm/arm64 on jenkins on '2024-11-25 08:07' Mon Nov 25 08:07:34 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/70240/console.log 1732522054 arm64 bookworm plasmidid Mon Nov 25 08:07:34 UTC 2024 I: Downloading source for bookworm/plasmidid=1.6.5+dfsg-2 --2024-11-25 08:07:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.5+dfsg-2.dsc’ 0K .. 100% 315M=0s 2024-11-25 08:07:35 (315 MB/s) - ‘plasmidid_1.6.5+dfsg-2.dsc’ saved [2224/2224] --2024-11-25 08:07:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/p/plasmidid/plasmidid_1.6.5%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2224 (2.2K) [text/prs.lines.tag] Saving to: ‘plasmidid_1.6.5+dfsg-2.dsc’ 0K .. 100% 315M=0s 2024-11-25 08:07:35 (315 MB/s) - ‘plasmidid_1.6.5+dfsg-2.dsc’ saved [2224/2224] Mon Nov 25 08:07:35 UTC 2024 I: plasmidid_1.6.5+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: plasmidid Binary: plasmidid Architecture: any Version: 1.6.5+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Steffen Moeller Homepage: https://github.com/BU-ISCIII/plasmidID Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/plasmidid Vcs-Git: https://salsa.debian.org/med-team/plasmidid.git Build-Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+ , bedtools , bowtie2 , samtools , prokka , cd-hit , mash , circos Package-List: plasmidid deb science optional arch=any Checksums-Sha1: aaf8de5458960d7cdcec525688ac606b65f4c0cd 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 5c6cc06a86c74352ffce0c770b8d61b6b8c21c19 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Checksums-Sha256: bbe9f8caae7711ca59a5826c6cadf1cca152862a40a1a54361602bddad6d0766 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz e58d797183242730628416a56c29a188227022eec210f67e0253d0fbcf887b90 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz Files: e4c746c886d3384c790a73039e8d6f1b 84745732 plasmidid_1.6.5+dfsg.orig.tar.xz 018ade6017602b77c549c0a13b0138e0 4040 plasmidid_1.6.5+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmN/nRQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHW4w//VSK3vFvSQdIsOsxhRrwG5ANMO5JRIV7e D1MgAk5qYnq/fgTRH16kPEF82KNRHlVlZTW1QCSkKZGweTUnUbuU5OtBUjtUv+lt kEirZK0drlPDu85Z1QPbN8PVy92k4jCaEoiLIssMkjsMhYgvVqFmS7TlVvLlJziv 7A3fIpdEds7aF76DEpYY2ONjgbTnehbp28qBTy4JyHjZ1BBXhgzokwCFfwzCccgC CqjmlvCvA0W5rdAeHIvZj7CQtYTar2EhJ7BacEGtPBz2kS8BzxxJpAFNaLTAmdck l2ng+thQuzS5X25msMZ/xqDA5l3mx0CmmStR07Xc2DUg5yrK7pKFyiRPhO6qx9Ho 2CqeWZSquhVAmI4dUDIebD7vkwdiGfzkPsEbM6vgtmVA4iZAI1ALAIluRO0nxIoY h0rAegbsSPt4D4XASVJBJ3RFV6aHSCz2bhO4xGAEFvdLKI+/bkHgUvtW12o5kEHD R4K3J9aB1+GPpVMk6Odw0wUV5Pm5msRDc6xCcQuT+swa2iEhQ6+7fy/cG8ajLnHv qciukAFcCYehUYJqW0WYQCmTJg0c1m+IxGGQdNFo4OTy5oqF2TQ4GtD1h22ZwdYp rldn7/XNvTARPe7j+q+eK1ny4gyYXge8xEFsRZkNqOgriiOxVlhSlh0V79rdkLtj 3QRgEn4QBlg= =/Dmf -----END PGP SIGNATURE----- Mon Nov 25 08:07:35 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 08:07:35 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Mon Nov 25 08:07:35 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Mon Nov 25 08:07:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Mon Nov 25 08:07:35 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9sCofT' ==================================================================================== Mon Nov 25 08:07:36 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 plasmidid bookworm /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU 1.6.5+dfsg-2" as arguments. Mon Nov 25 08:07:36 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-0MEdjjt3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 08:07:36 UTC 2024 I: Downloading source for bookworm/plasmidid=1.6.5+dfsg-2 Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (dsc) [2224 B] Get:2 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (tar) [84.7 MB] Get:3 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (diff) [4040 B] Fetched 84.8 MB in 2s (45.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'plasmidid' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/plasmidid.git Please use: git clone https://salsa.debian.org/med-team/plasmidid.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.8 MB of source archives. Get:1 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (dsc) [2224 B] Get:2 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (tar) [84.7 MB] Get:3 http://deb.debian.org/debian bookworm/main plasmidid 1.6.5+dfsg-2 (diff) [4040 B] Fetched 84.8 MB in 2s (45.6 MB/s) Download complete and in download only mode ============================================================================= Building plasmidid in bookworm on arm64 on codethink04-arm64 now. Date: Mon Nov 25 08:07:38 GMT 2024 Date UTC: Mon Nov 25 08:07:38 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 20:07:39 -12 2024 I: pbuilder-time-stamp: 1732522059 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plasmidid_1.6.5+dfsg-2.dsc] I: copying [./plasmidid_1.6.5+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 04:34:28 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plasmidid_1.6.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plasmidid in plasmidid-1.6.5+dfsg dpkg-source: info: unpacking plasmidid_1.6.5+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4078116/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='40da101805bf455c88837d8c6bc551a8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4078116' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/pbuilderrc_Z53Z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/b1 --logfile b1/build.log plasmidid_1.6.5+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Mar 29 2024 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Oct 18 00:56 more -rwsr-xr-x 1 root root 67744 Oct 18 00:56 mount -rwxr-xr-x 1 root root 67744 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Oct 18 00:56 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Oct 18 00:56 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4078116/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libarchive-zip-perl{a} libavif15{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.9.2{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl27{a} libgslcblas0{a} libheif1{a} libhts3{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After unpacking 323 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: prokka which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libarchive-zip-perl{a} libavif15{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.9.2{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl27{a} libgslcblas0{a} libheif1{a} libhts3{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After unpacking 323 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4078116 and its subdirectories Starting cleanup. All cleanup done. Mon Nov 25 08:07:53 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-0MEdjjt3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 08:07 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 08:07 b2 -rw-r--r-- 1 jenkins jenkins 2224 Nov 24 2022 plasmidid_1.6.5+dfsg-2.dsc -rw------- 1 jenkins jenkins 3386 Nov 25 08:07 rbuildlog.bLkyEPL /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/b1: total 20 -rw-r--r-- 1 jenkins jenkins 17048 Nov 25 08:07 build.log /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/b2: total 0 Mon Nov 25 08:07:54 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 24 20:07:39 -12 2024 I: pbuilder-time-stamp: 1732522059 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [plasmidid_1.6.5+dfsg-2.dsc] I: copying [./plasmidid_1.6.5+dfsg.orig.tar.xz] I: copying [./plasmidid_1.6.5+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 24 04:34:28 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./plasmidid_1.6.5+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting plasmidid in plasmidid-1.6.5+dfsg dpkg-source: info: unpacking plasmidid_1.6.5+dfsg.orig.tar.xz dpkg-source: info: unpacking plasmidid_1.6.5+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixTests.patch dpkg-source: info: applying AdjustPythonPath.patch dpkg-source: info: applying spelling.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4078116/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='40da101805bf455c88837d8c6bc551a8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4078116' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/pbuilderrc_Z53Z --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.xZu3aXRU/b1 --logfile b1/build.log plasmidid_1.6.5+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Mar 29 2024 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Oct 18 00:56 more -rwsr-xr-x 1 root root 67744 Oct 18 00:56 mount -rwxr-xr-x 1 root root 67744 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Oct 18 00:56 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Oct 18 00:56 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/4078116/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, help2man, ncbi-blast+, bedtools, bowtie2, samtools, prokka, cd-hit, mash, circos dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on bedtools; however: Package bedtools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on prokka; however: Package prokka is not installed. pbuilder-satisfydepends-dummy depends on cd-hit; however: Package cd-hit is not installed. pbuilder-satisfydepends-dummy depends on mash; however: Package mash is not installed. pbuilder-satisfydepends-dummy depends on circos; however: Package circos is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libarchive-zip-perl{a} libavif15{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.9.2{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl27{a} libgslcblas0{a} libheif1{a} libhts3{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After unpacking 323 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: prokka which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bedtools{a} bowtie2{a} bsdextrautils{a} cd-hit{a} circos{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-circos-symbols{a} fonts-cmu{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libabsl20220623{a} libaom3{a} libarchive-zip-perl{a} libavif15{a} libb-hooks-op-check-perl{a} libbrotli1{a} libbsd0{a} libcapnp-0.9.2{a} libcarp-always-perl{a} libclone-perl{a} libconfig-general-perl{a} libcurl3-gnutls{a} libdata-dumper-simple-perl{a} libdav1d6{a} libde265-0{a} libdebhelper-perl{a} libdeflate0{a} libdevel-callchecker-perl{a} libdynaloader-functions-perl{a} libelf1{a} libexpat1{a} libfile-basedir-perl{a} libfile-stripnondeterminism-perl{a} libfont-ttf-perl{a} libfontconfig1{a} libfreetype6{a} libgav1-1{a} libgd-perl{a} libgd3{a} libgetopt-simple-perl{a} libgraphics-colornames-perl{a} libgraphics-colorobject-perl{a} libgsl27{a} libgslcblas0{a} libheif1{a} libhts3{a} libhtscodecs2{a} libicu72{a} libio-all-perl{a} libio-string-perl{a} libipc-system-simple-perl{a} libjbig0{a} libjpeg62-turbo{a} libldap-2.5-0{a} liblerc4{a} liblist-allutils-perl{a} liblist-someutils-perl{a} liblist-utilsby-perl{a} liblmdb0{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1{a} libmath-bezier-perl{a} libmath-round-perl{a} libmath-vec-perl{a} libmath-vecstat-perl{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmodule-implementation-perl{a} libmodule-runtime-perl{a} libmurmurhash2{a} libncurses6{a} libnghttp2-14{a} libnuma1{a} libnumber-format-perl{a} libparams-classify-perl{a} libparams-validate-perl{a} libpcre3{a} libpipeline1{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} librav1e0{a} libreadline8{a} libreadonly-perl{a} libregexp-common-perl{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libset-intspan-perl{a} libspiffy-perl{a} libssh2-1{a} libstatistics-basic-perl{a} libsub-override-perl{a} libsvg-perl{a} libsvtav1enc1{a} libtext-format-perl{a} libtiff6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx265-199{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxml2{a} libxpm4{a} libyuv0{a} m4{a} man-db{a} mash{a} media-types{a} ncbi-blast+{a} ncbi-data{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3.11{a} python3.11-minimal{a} readline-common{a} samtools{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates circos-tools curl libarchive-cpio-perl libcgi-pm-perl libgpm2 libldap-common liblist-someutils-xs-perl libltdl-dev libmail-sendmail-perl libpod-coverage-perl libsasl2-modules libtest-pod-perl lynx publicsuffix wget 0 packages upgraded, 145 newly installed, 0 to remove and 0 not upgraded. Need to get 77.1 MB of archives. After unpacking 323 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4078116 and its subdirectories plasmidid failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/plasmidid_1.6.5+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/plasmidid_1.6.5+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build1.log.gz' Mon Nov 25 08:07:55 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 74.0% -- replaced with stdout Mon Nov 25 08:07:55 UTC 2024 W: Downloading the build dependencies failed Mon Nov 25 08:07:55 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Mon Nov 25 08:07:55 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 08:07:56] INFO: Starting at 2024-11-25 08:07:56.370893 [2024-11-25 08:07:56] INFO: Generating the pages of 1 package(s) [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/arm64/plasmidid didn't produce a buildlog, even though it has been built. [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:57] INFO: Finished at 2024-11-25 08:07:57.246284, took: 0:00:00.875397 Mon Nov 25 08:07:57 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/arm64/plasmidid.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/plasmidid_1.6.5+dfsg-2.rbuild.log: 70.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/plasmidid_1.6.5+dfsg-2.rbuild.log.gz [2024-11-25 08:07:57] INFO: Starting at 2024-11-25 08:07:57.638929 [2024-11-25 08:07:57] INFO: Generating the pages of 1 package(s) [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/plasmidid_1.6.5+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/plasmidid_1.6.5+dfsg-2.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/plasmidid_1.6.3+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/plasmidid_1.6.3+dfsg-3.diff.gz is missing [2024-11-25 08:07:58] INFO: Finished at 2024-11-25 08:07:58.505515, took: 0:00:00.866592 All cleanup done. Mon Nov 25 08:07:58 UTC 2024 - total duration: 0h 0m 30s. Mon Nov 25 08:07:58 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-zWIfuDPu, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 33.159s CPU time consumed: 5.741s