Running as unit: rb-build-arm64_12-82629.service ==================================================================================== Sat Feb 22 07:44:35 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Sat Feb 22 07:44:36 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-k8eZa2uM" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:44:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:44:36 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-9kM7kJ' Sat Feb 22 07:44:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:44:36 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-dha3kq' ok, let's check if racon is building anywhere yet… ok, racon is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of racon in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sat Feb 22 07:44:56 UTC 2025 I: starting to build racon/unstable/arm64 on jenkins on '2025-02-22 07:44' Sat Feb 22 07:44:56 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/82629/console.log 1740210296 arm64 unstable racon Sat Feb 22 07:44:56 UTC 2025 I: Downloading source for unstable/racon=1.5.0-3 --2025-02-22 07:44:56-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 24.6M=0s 2025-02-22 07:44:56 (24.6 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] --2025-02-22 07:44:56-- http://deb.debian.org/debian/pool/main/r/racon/racon_1.5.0-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2106 (2.1K) [text/prs.lines.tag] Saving to: ‘racon_1.5.0-3.dsc’ 0K .. 100% 24.6M=0s 2025-02-22 07:44:56 (24.6 MB/s) - ‘racon_1.5.0-3.dsc’ saved [2106/2106] Sat Feb 22 07:44:56 UTC 2025 I: racon_1.5.0-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: racon Binary: racon Architecture: any Version: 1.5.0-3 Maintainer: Debian Med Packaging Team Uploaders: Cédric Lood , Andreas Tille Homepage: https://github.com/lbcb-sci/racon Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/racon Vcs-Git: https://salsa.debian.org/med-team/racon.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler Package-List: racon deb science optional arch=any Checksums-Sha1: c508bea6f7b627e1796f2017669a8e99ed548ddd 3084154 racon_1.5.0.orig.tar.gz 5d5d6ba7f343bf6ee3124a052eb1858b9431dbf1 20652 racon_1.5.0-3.debian.tar.xz Checksums-Sha256: 58fdbbd88f0990b18e3139280aa4fa81e138a9cf0761edd66c43982af784d395 3084154 racon_1.5.0.orig.tar.gz 87ebd723dfb828888b59a5ed30143aa24ec3798c933f41e00196dacc3874d911 20652 racon_1.5.0-3.debian.tar.xz Files: de1982c33464fc7cec8a172931a6cf00 3084154 racon_1.5.0.orig.tar.gz face5096f46b2ce6c9c836bb01cf1603 20652 racon_1.5.0-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmM1k2ERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHvaQ/+N79w1AElJT5zodwml2cN53AhsH46O5QP JzGAY+aYLx/AZ9C6VIbd6eiTsZ+qNDSWLqqd/ABykcNbZEA+dBiRpX08U4/5OCNi zhXwtP+rO9w0znNpX6S8jUHMnC9yFlwW4t/1GmNAZ42byGm1vA5/6IXTkg2icHL0 8SSvibSqiZgNhiitaMPnKs1fSQA2ymTONHczdKuSRjTzpVkADmdpQch3j0TwZmF5 /hcYo4651y2NbVVJRbTEwPNoDXUE3TaXo0UZVojz5sOYHDQBGcbrai64O7ycB7Pd w+y3JfPaHzfRm23vsnO6PbpG+GFOflG54PIlNHa0Z90QHGZSlZym2gjvU36M2fa9 t3ZMnBLcUBkvTPWJeis9H3mv1/gmFtomkxf0cMz928nSwO8P1MvhoyrCu66q7PzO sOI8KxZ4tdbz+JvwHaa/FBrwl+n1krpXMD8PwoGxsLrY0a/gErVXooD3YoeTzv6d U/xsrofS7jo8CIaWTT2aMoK5JN5YRbk12zH2hWnJw/7XOKBcnTbIhQjRpf4AwfjS X8IJf9txoPJEn1atb/Af7F4FqOmMoAwlDsJPrftzo9bPpfaUocqekHZZJsMro9Xi fbm+SfYqW1SkeLNSR2twNJG1r+eZm6dNsipnerAsTGM7ejcAoyu0LjtZnpoGgS/5 41EO1XUq4VQ= =933u -----END PGP SIGNATURE----- Sat Feb 22 07:44:56 UTC 2025 I: Checking whether the package is not for us Sat Feb 22 07:44:56 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sat Feb 22 07:44:56 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sat Feb 22 07:44:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Feb 22 07:44:56 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-BhUO9s' ==================================================================================== Sat Feb 22 07:44:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 racon unstable /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0 1.5.0-3" as arguments. Sat Feb 22 07:44:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-eaAUvij3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Feb 22 07:44:58 UTC 2025 I: Downloading source for unstable/racon=1.5.0-3 Reading package lists... NOTICE: 'racon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/racon.git Please use: git clone https://salsa.debian.org/med-team/racon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3107 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (dsc) [2106 B] Get:2 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (tar) [3084 kB] Get:3 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (diff) [20.7 kB] Fetched 3107 kB in 0s (23.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'racon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/racon.git Please use: git clone https://salsa.debian.org/med-team/racon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3107 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (dsc) [2106 B] Get:2 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (tar) [3084 kB] Get:3 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (diff) [20.7 kB] Fetched 3107 kB in 0s (23.1 MB/s) Download complete and in download only mode ============================================================================= Building racon in unstable on arm64 on codethink04-arm64 now. Date: Sat Feb 22 07:44:58 GMT 2025 Date UTC: Sat Feb 22 07:44:58 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 19:44:59 -12 2025 I: pbuilder-time-stamp: 1740210299 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ea6eaba0a4d248028af87dd849c9037e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='718479' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_i85u --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libedlib1 arm64 1.2.7-6+b2 [17.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libedlib-dev arm64 1.2.7-6+b2 [22.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 40.1 MB in 0s (141 MB/s) 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Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:arm64 (4.1.4-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libedlib1:arm64 (1.2.7-6+b2) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:arm64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libedlib-dev:arm64 (1.2.7-6+b2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libspoa-dev:arm64 (4.1.4-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:arm64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make 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-O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (12 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000791 s [racon::Polisher::initialize] loaded sequences 0.046262 s [racon::Polisher::initialize] loaded overlaps 0.000287 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.060479 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.073832 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.084330 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.095629 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103289 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109152 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131272 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141718 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149863 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157040 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167057 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.185139 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.191075 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.223488 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.229463 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.235035 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240328 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247800 s [racon::Polisher::initialize] transformed data into windows 0.003932 s [racon::Polisher::polish] generating consensus [=> ] 0.045717 s [racon::Polisher::polish] generating consensus [==> ] 0.075384 s [racon::Polisher::polish] generating consensus [===> ] 0.100447 s [racon::Polisher::polish] generating consensus [====> ] 0.114890 s [racon::Polisher::polish] generating consensus [=====> ] 0.127197 s [racon::Polisher::polish] generating consensus [======> ] 0.137768 s [racon::Polisher::polish] generating consensus [=======> ] 0.147735 s [racon::Polisher::polish] generating consensus [========> ] 0.159436 s [racon::Polisher::polish] generating consensus [=========> ] 0.174616 s [racon::Polisher::polish] generating consensus [==========> ] 0.191343 s [racon::Polisher::polish] generating consensus [===========> ] 0.219886 s [racon::Polisher::polish] generating consensus [============> ] 0.255659 s [racon::Polisher::polish] generating consensus [=============> ] 0.303597 s [racon::Polisher::polish] generating consensus [==============> ] 0.350419 s [racon::Polisher::polish] generating consensus [===============> ] 0.383766 s [racon::Polisher::polish] generating consensus [================> ] 0.407768 s [racon::Polisher::polish] generating consensus [=================> ] 0.438421 s [racon::Polisher::polish] generating consensus [==================> ] 0.456098 s [racon::Polisher::polish] generating consensus [===================>] 0.480001 s [racon::Polisher::polish] generating consensus [====================] 0.557544 s [racon::Polisher::] total = 0.883083 s [ OK ] RaconPolishingTest.ConsensusWithQualities (892 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000893 s [racon::Polisher::initialize] loaded sequences 0.026524 s [racon::Polisher::initialize] loaded overlaps 0.000392 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041088 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060438 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078859 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089895 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102585 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112877 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.135021 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.145006 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.153158 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.160289 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.170231 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.178818 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188182 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.192871 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199235 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.204523 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.209056 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.221121 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.234952 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243686 s [racon::Polisher::initialize] transformed data into windows 0.000626 s [racon::Polisher::polish] generating consensus [=> ] 0.026950 s [racon::Polisher::polish] generating consensus [==> ] 0.057368 s [racon::Polisher::polish] generating consensus [===> ] 0.081280 s [racon::Polisher::polish] generating consensus [====> ] 0.100669 s [racon::Polisher::polish] generating consensus [=====> ] 0.115124 s [racon::Polisher::polish] generating consensus [======> ] 0.128685 s [racon::Polisher::polish] generating consensus [=======> ] 0.145532 s [racon::Polisher::polish] generating consensus [========> ] 0.159916 s [racon::Polisher::polish] generating consensus [=========> ] 0.177078 s [racon::Polisher::polish] generating consensus [==========> ] 0.205912 s [racon::Polisher::polish] generating consensus [===========> ] 0.240562 s [racon::Polisher::polish] generating consensus [============> ] 0.282587 s [racon::Polisher::polish] generating consensus [=============> ] 0.343494 s [racon::Polisher::polish] generating consensus [==============> ] 0.389080 s [racon::Polisher::polish] generating consensus [===============> ] 0.433744 s [racon::Polisher::polish] generating consensus [================> ] 0.477599 s [racon::Polisher::polish] generating consensus [=================> ] 0.520298 s [racon::Polisher::polish] generating consensus [==================> ] 0.545129 s [racon::Polisher::polish] generating consensus [===================>] 0.573858 s [racon::Polisher::polish] generating consensus [====================] 0.739476 s [racon::Polisher::] total = 1.020402 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1031 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000364 s [racon::Polisher::initialize] loaded sequences 0.026442 s [racon::Polisher::initialize] loaded overlaps 0.015661 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.005136 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005336 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005596 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005947 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006119 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006321 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006605 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007086 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007214 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007395 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007660 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008138 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008306 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008627 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008749 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008941 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008947 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009036 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009121 s [racon::Polisher::initialize] transformed data into windows 0.001393 s [racon::Polisher::polish] generating consensus [=> ] 0.056754 s [racon::Polisher::polish] generating consensus [==> ] 0.091025 s [racon::Polisher::polish] generating consensus [===> ] 0.119195 s [racon::Polisher::polish] generating consensus [====> ] 0.136169 s [racon::Polisher::polish] generating consensus [=====> ] 0.145958 s [racon::Polisher::polish] generating consensus [======> ] 0.156117 s [racon::Polisher::polish] generating consensus [=======> ] 0.166340 s [racon::Polisher::polish] generating consensus [========> ] 0.178094 s [racon::Polisher::polish] generating consensus [=========> ] 0.191489 s [racon::Polisher::polish] generating consensus [==========> ] 0.209909 s [racon::Polisher::polish] generating consensus [===========> ] 0.235358 s [racon::Polisher::polish] generating consensus [============> ] 0.269894 s [racon::Polisher::polish] generating consensus [=============> ] 0.316051 s [racon::Polisher::polish] generating consensus [==============> ] 0.363253 s [racon::Polisher::polish] generating consensus [===============> ] 0.404499 s [racon::Polisher::polish] generating consensus [================> ] 0.429487 s [racon::Polisher::polish] generating consensus [=================> ] 0.463146 s [racon::Polisher::polish] generating consensus [==================> ] 0.503539 s [racon::Polisher::polish] generating consensus [===================>] 0.522655 s [racon::Polisher::polish] generating consensus [====================] 0.570208 s [racon::Polisher::] total = 0.649323 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (654 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000756 s [racon::Polisher::initialize] loaded sequences 0.024615 s [racon::Polisher::initialize] loaded overlaps 0.026898 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.003235 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003464 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003755 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003989 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004162 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004346 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004707 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005256 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005438 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005702 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006014 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006022 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006138 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.006176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.006184 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.006190 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006223 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006371 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006378 s [racon::Polisher::initialize] transformed data into windows 0.000447 s [racon::Polisher::polish] generating consensus [=> ] 0.060231 s [racon::Polisher::polish] generating consensus [==> ] 0.101675 s [racon::Polisher::polish] generating consensus [===> ] 0.132404 s [racon::Polisher::polish] generating consensus [====> ] 0.150696 s [racon::Polisher::polish] generating consensus [=====> ] 0.163872 s [racon::Polisher::polish] generating consensus [======> ] 0.176439 s [racon::Polisher::polish] generating consensus [=======> ] 0.189785 s [racon::Polisher::polish] generating consensus [========> ] 0.206100 s [racon::Polisher::polish] generating consensus [=========> ] 0.222434 s [racon::Polisher::polish] generating consensus [==========> ] 0.247208 s [racon::Polisher::polish] generating consensus [===========> ] 0.278408 s [racon::Polisher::polish] generating consensus [============> ] 0.318029 s [racon::Polisher::polish] generating consensus [=============> ] 0.367735 s [racon::Polisher::polish] generating consensus [==============> ] 0.419010 s [racon::Polisher::polish] generating consensus [===============> ] 0.459028 s [racon::Polisher::polish] generating consensus [================> ] 0.499995 s [racon::Polisher::polish] generating consensus [=================> ] 0.542554 s [racon::Polisher::polish] generating consensus [==================> ] 0.564019 s [racon::Polisher::polish] generating consensus [===================>] 0.588650 s [racon::Polisher::polish] generating consensus [====================] 0.719401 s [racon::Polisher::] total = 0.795738 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (797 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000971 s [racon::Polisher::initialize] loaded sequences 0.052791 s [racon::Polisher::initialize] loaded overlaps 0.000302 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042002 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057804 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.069804 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.083473 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.091296 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.096727 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.113946 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.136323 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148017 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.167779 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183909 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186775 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.201396 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207637 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.229118 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.233144 s [racon::Polisher::initialize] aligning overlaps [====================] 0.240492 s [racon::Polisher::initialize] transformed data into windows 0.001302 s [racon::Polisher::polish] generating consensus [=> ] 0.091651 s [racon::Polisher::polish] generating consensus [==> ] 0.096599 s [racon::Polisher::polish] generating consensus [===> ] 0.172270 s [racon::Polisher::polish] generating consensus [====> ] 0.172638 s [racon::Polisher::polish] generating consensus [=====> ] 0.212643 s [racon::Polisher::polish] generating consensus [======> ] 0.212673 s [racon::Polisher::polish] generating consensus [=======> ] 0.246186 s [racon::Polisher::polish] generating consensus [========> ] 0.246232 s [racon::Polisher::polish] generating consensus [=========> ] 0.303999 s [racon::Polisher::polish] generating consensus [==========> ] 0.319187 s [racon::Polisher::polish] generating consensus [===========> ] 0.407179 s [racon::Polisher::polish] generating consensus [============> ] 0.439006 s [racon::Polisher::polish] generating consensus [=============> ] 0.588171 s [racon::Polisher::polish] generating consensus [==============> ] 0.611382 s [racon::Polisher::polish] generating consensus [===============> ] 0.702385 s [racon::Polisher::polish] generating consensus [================> ] 0.714545 s [racon::Polisher::polish] generating consensus [=================> ] 0.803576 s [racon::Polisher::polish] generating consensus [==================> ] 0.803611 s [racon::Polisher::polish] generating consensus [===================>] 0.887524 s [racon::Polisher::polish] generating consensus [====================] 1.065365 s [racon::Polisher::] total = 1.385889 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1406 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000974 s [racon::Polisher::initialize] loaded sequences 0.057574 s [racon::Polisher::initialize] loaded overlaps 0.000322 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.043961 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088999 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097979 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.121719 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.135836 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139772 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147231 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.157089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169116 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.175588 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183882 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194935 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214534 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219294 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226961 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.235017 s [racon::Polisher::initialize] aligning overlaps [====================] 0.242914 s [racon::Polisher::initialize] transformed data into windows 0.001630 s [racon::Polisher::polish] generating consensus [=> ] 0.023711 s [racon::Polisher::polish] generating consensus [==> ] 0.045684 s [racon::Polisher::polish] generating consensus [===> ] 0.063741 s [racon::Polisher::polish] generating consensus [====> ] 0.094175 s [racon::Polisher::polish] generating consensus [=====> ] 0.101293 s [racon::Polisher::polish] generating consensus [======> ] 0.112267 s [racon::Polisher::polish] generating consensus [=======> ] 0.122535 s [racon::Polisher::polish] generating consensus [========> ] 0.132583 s [racon::Polisher::polish] generating consensus [=========> ] 0.141723 s [racon::Polisher::polish] generating consensus [==========> ] 0.165575 s [racon::Polisher::polish] generating consensus [===========> ] 0.188876 s [racon::Polisher::polish] generating consensus [============> ] 0.222616 s [racon::Polisher::polish] generating consensus [=============> ] 0.263754 s [racon::Polisher::polish] generating consensus [==============> ] 0.305643 s [racon::Polisher::polish] generating consensus [===============> ] 0.341705 s [racon::Polisher::polish] generating consensus [================> ] 0.365316 s [racon::Polisher::polish] generating consensus [=================> ] 0.396710 s [racon::Polisher::polish] generating consensus [==================> ] 0.415443 s [racon::Polisher::polish] generating consensus [===================>] 0.434070 s [racon::Polisher::polish] generating consensus [====================] 0.516301 s [racon::Polisher::] total = 0.844289 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (846 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.060722 s [racon::Polisher::initialize] loaded sequences 0.035801 s [racon::Polisher::initialize] loaded overlaps 0.008053 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042604 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057074 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.071610 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.099948 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102742 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.117723 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125767 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138175 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148449 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176603 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188368 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202456 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.211331 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226119 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235316 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.242742 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.246943 s [racon::Polisher::initialize] aligning overlaps [====================] 0.261708 s [racon::Polisher::initialize] transformed data into windows 0.006764 s [racon::Polisher::polish] generating consensus [=> ] 0.021947 s [racon::Polisher::polish] generating consensus [==> ] 0.043407 s [racon::Polisher::polish] generating consensus [===> ] 0.064685 s [racon::Polisher::polish] generating consensus [====> ] 0.064920 s [racon::Polisher::polish] generating consensus [=====> ] 0.080052 s [racon::Polisher::polish] generating consensus [======> ] 0.090056 s [racon::Polisher::polish] generating consensus [=======> ] 0.104541 s [racon::Polisher::polish] generating consensus [========> ] 0.107985 s [racon::Polisher::polish] generating consensus [=========> ] 0.135573 s [racon::Polisher::polish] generating consensus [==========> ] 0.147698 s [racon::Polisher::polish] generating consensus [===========> ] 0.158353 s [racon::Polisher::polish] generating consensus [============> ] 0.162285 s [racon::Polisher::polish] generating consensus [=============> ] 0.174523 s [racon::Polisher::polish] generating consensus [==============> ] 0.174842 s [racon::Polisher::polish] generating consensus [===============> ] 0.202885 s [racon::Polisher::polish] generating consensus [================> ] 0.203059 s [racon::Polisher::polish] generating consensus [=================> ] 0.254369 s [racon::Polisher::polish] generating consensus [==================> ] 0.272748 s [racon::Polisher::polish] generating consensus [===================>] 0.285411 s [racon::Polisher::polish] generating consensus [====================] 0.287409 s [racon::Polisher::] total = 0.660924 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (662 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.026237 s [racon::Polisher::initialize] loaded sequences 0.026146 s [racon::Polisher::initialize] loaded overlaps 0.006938 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.297599 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.455676 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.600339 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.812442 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.001310 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.131576 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.307790 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.535242 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743675 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953140 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.113943 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.342298 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.573651 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.763636 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029707 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.271737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484105 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.712026 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967078 s [racon::Polisher::initialize] aligning overlaps [====================] 4.156447 s [racon::Polisher::initialize] transformed data into windows 0.085425 s [racon::Polisher::polish] generating consensus [=> ] 0.968043 s [racon::Polisher::polish] generating consensus [==> ] 1.648972 s [racon::Polisher::polish] generating consensus [===> ] 2.380784 s [racon::Polisher::polish] generating consensus [====> ] 2.983465 s [racon::Polisher::polish] generating consensus [=====> ] 3.637553 s [racon::Polisher::polish] generating consensus [======> ] 4.405981 s [racon::Polisher::polish] generating consensus [=======> ] 5.183578 s [racon::Polisher::polish] generating consensus [========> ] 5.747647 s [racon::Polisher::polish] generating consensus [=========> ] 6.489451 s [racon::Polisher::polish] generating consensus [==========> ] 7.349881 s [racon::Polisher::polish] generating consensus [===========> ] 8.058886 s [racon::Polisher::polish] generating consensus [============> ] 8.844954 s [racon::Polisher::polish] generating consensus [=============> ] 9.517978 s [racon::Polisher::polish] generating consensus [==============> ] 10.243179 s [racon::Polisher::polish] generating consensus [===============> ] 11.032924 s [racon::Polisher::polish] generating consensus [================> ] 11.464666 s [racon::Polisher::polish] generating consensus [=================> ] 12.343865 s [racon::Polisher::polish] generating consensus [==================> ] 13.165659 s [racon::Polisher::polish] generating consensus [===================>] 13.951403 s [racon::Polisher::polish] generating consensus [====================] 14.457003 s [racon::Polisher::] total = 18.762415 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18763 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.015531 s [racon::Polisher::initialize] loaded sequences 0.013416 s [racon::Polisher::initialize] loaded overlaps 0.007848 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.260923 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.430366 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.588310 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.801870 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.990732 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.117775 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.294546 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.521845 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.729655 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.941314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.100458 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.329171 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.561103 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.751367 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.018052 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.260189 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472132 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.699973 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.938719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143906 s [racon::Polisher::initialize] transformed data into windows 0.011485 s [racon::Polisher::polish] generating consensus [=> ] 1.267138 s [racon::Polisher::polish] generating consensus [==> ] 2.251257 s [racon::Polisher::polish] generating consensus [===> ] 3.224598 s [racon::Polisher::polish] generating consensus [====> ] 3.963828 s [racon::Polisher::polish] generating consensus [=====> ] 4.852840 s [racon::Polisher::polish] generating consensus [======> ] 5.833324 s [racon::Polisher::polish] generating consensus [=======> ] 6.886296 s [racon::Polisher::polish] generating consensus [========> ] 7.647147 s [racon::Polisher::polish] generating consensus [=========> ] 8.651785 s [racon::Polisher::polish] generating consensus [==========> ] 9.820590 s [racon::Polisher::polish] generating consensus [===========> ] 10.781640 s [racon::Polisher::polish] generating consensus [============> ] 11.840948 s [racon::Polisher::polish] generating consensus [=============> ] 12.827738 s [racon::Polisher::polish] generating consensus [==============> ] 13.832092 s [racon::Polisher::polish] generating consensus [===============> ] 14.830374 s [racon::Polisher::polish] generating consensus [================> ] 15.372688 s [racon::Polisher::polish] generating consensus [=================> ] 16.693851 s [racon::Polisher::polish] generating consensus [==================> ] 17.856922 s [racon::Polisher::polish] generating consensus [===================>] 18.875561 s [racon::Polisher::polish] generating consensus [====================] 19.775223 s [racon::Polisher::] total = 23.969221 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (23970 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.067877 s [racon::Polisher::initialize] loaded sequences 0.038218 s [racon::Polisher::initialize] loaded overlaps 0.007465 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.294096 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452436 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.606030 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819137 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003908 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.133578 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.308946 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.534467 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.741822 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.950560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.110716 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.338437 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.569025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.760533 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.023102 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.264084 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.474654 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709227 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.969885 s [racon::Polisher::initialize] aligning overlaps [====================] 4.171119 s [racon::Polisher::initialize] transformed data into windows 0.111243 s [racon::Polisher::polish] generating consensus [=> ] 0.979338 s [racon::Polisher::polish] generating consensus [==> ] 1.655764 s [racon::Polisher::polish] generating consensus [===> ] 2.373849 s [racon::Polisher::polish] generating consensus [====> ] 2.964068 s [racon::Polisher::polish] generating consensus [=====> ] 3.606440 s [racon::Polisher::polish] generating consensus [======> ] 4.361442 s [racon::Polisher::polish] generating consensus [=======> ] 5.124835 s [racon::Polisher::polish] generating consensus [========> ] 5.679185 s [racon::Polisher::polish] generating consensus [=========> ] 6.393159 s [racon::Polisher::polish] generating consensus [==========> ] 7.233715 s [racon::Polisher::polish] generating consensus [===========> ] 7.932189 s [racon::Polisher::polish] generating consensus [============> ] 8.697083 s [racon::Polisher::polish] generating consensus [=============> ] 9.362602 s [racon::Polisher::polish] generating consensus [==============> ] 10.076029 s [racon::Polisher::polish] generating consensus [===============> ] 10.853037 s [racon::Polisher::polish] generating consensus [================> ] 11.277530 s [racon::Polisher::polish] generating consensus [=================> ] 12.135240 s [racon::Polisher::polish] generating consensus [==================> ] 12.939017 s [racon::Polisher::polish] generating consensus [===================>] 13.710610 s [racon::Polisher::polish] generating consensus [====================] 14.313247 s [racon::Polisher::] total = 18.718000 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18719 ms) [----------] 10 tests from RaconPolishingTest (67745 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (67758 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/718479 and its subdirectories I: Current time: Fri Feb 21 19:46:48 -12 2025 I: pbuilder-time-stamp: 1740210408 Sat Feb 22 07:46:48 UTC 2025 I: Signing ./b1/racon_1.5.0-3_arm64.buildinfo as racon_1.5.0-3_arm64.buildinfo.asc Sat Feb 22 07:46:48 UTC 2025 I: Signed ./b1/racon_1.5.0-3_arm64.buildinfo as ./b1/racon_1.5.0-3_arm64.buildinfo.asc Sat Feb 22 07:46:48 UTC 2025 - build #1 for racon/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Feb 22 07:46:48 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-eaAUvij3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:46 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:44 b2 -rw-r--r-- 1 jenkins jenkins 2106 Sep 29 2022 racon_1.5.0-3.dsc -rw------- 1 jenkins jenkins 3203 Feb 22 07:44 rbuildlog.29cNwEp /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1: total 4172 -rw-r--r-- 1 jenkins jenkins 83921 Feb 22 07:46 build.log -rw-r--r-- 1 jenkins jenkins 1017984 Feb 22 07:46 racon-dbgsym_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 20652 Feb 22 07:46 racon_1.5.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2106 Feb 22 07:46 racon_1.5.0-3.dsc -rw-r--r-- 1 jenkins jenkins 6222 Feb 22 07:46 racon_1.5.0-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7104 Feb 22 07:46 racon_1.5.0-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Feb 22 07:46 racon_1.5.0-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 3111016 Feb 22 07:46 racon_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1228 Feb 22 07:46 racon_1.5.0-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2: total 0 Sat Feb 22 07:46:49 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Feb 21 19:44:59 -12 2025 I: pbuilder-time-stamp: 1740210299 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ea6eaba0a4d248028af87dd849c9037e' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='718479' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_i85u --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1 --logfile b1/build.log racon_1.5.0-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libedlib1 arm64 1.2.7-6+b2 [17.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libedlib-dev arm64 1.2.7-6+b2 [22.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 40.1 MB in 0s (141 MB/s) 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Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:arm64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libedlib-dev:arm64 (1.2.7-6+b2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libspoa-dev:arm64 (4.1.4-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.9s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start 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-O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu 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-I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib 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/usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (12 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.000791 s [racon::Polisher::initialize] loaded sequences 0.046262 s [racon::Polisher::initialize] loaded overlaps 0.000287 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.060479 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.073832 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.084330 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.095629 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103289 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109152 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131272 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141718 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149863 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157040 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167057 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.185139 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.191075 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.223488 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.229463 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.235035 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240328 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247800 s [racon::Polisher::initialize] transformed data into windows 0.003932 s [racon::Polisher::polish] generating consensus [=> ] 0.045717 s [racon::Polisher::polish] generating consensus [==> ] 0.075384 s [racon::Polisher::polish] generating consensus [===> ] 0.100447 s [racon::Polisher::polish] generating consensus [====> ] 0.114890 s [racon::Polisher::polish] generating consensus [=====> ] 0.127197 s [racon::Polisher::polish] generating consensus [======> ] 0.137768 s [racon::Polisher::polish] generating consensus [=======> ] 0.147735 s [racon::Polisher::polish] generating consensus [========> ] 0.159436 s [racon::Polisher::polish] generating consensus [=========> ] 0.174616 s [racon::Polisher::polish] generating consensus [==========> ] 0.191343 s [racon::Polisher::polish] generating consensus [===========> ] 0.219886 s [racon::Polisher::polish] generating consensus [============> ] 0.255659 s [racon::Polisher::polish] generating consensus [=============> ] 0.303597 s [racon::Polisher::polish] generating consensus [==============> ] 0.350419 s [racon::Polisher::polish] generating consensus [===============> ] 0.383766 s [racon::Polisher::polish] generating consensus [================> ] 0.407768 s [racon::Polisher::polish] generating consensus [=================> ] 0.438421 s [racon::Polisher::polish] generating consensus [==================> ] 0.456098 s [racon::Polisher::polish] generating consensus [===================>] 0.480001 s [racon::Polisher::polish] generating consensus [====================] 0.557544 s [racon::Polisher::] total = 0.883083 s [ OK ] RaconPolishingTest.ConsensusWithQualities (892 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000893 s [racon::Polisher::initialize] loaded sequences 0.026524 s [racon::Polisher::initialize] loaded overlaps 0.000392 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041088 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060438 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078859 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089895 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102585 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112877 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.135021 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.145006 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.153158 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.160289 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.170231 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.178818 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188182 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.192871 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199235 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.204523 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.209056 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.221121 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.234952 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243686 s [racon::Polisher::initialize] transformed data into windows 0.000626 s [racon::Polisher::polish] generating consensus [=> ] 0.026950 s [racon::Polisher::polish] generating consensus [==> ] 0.057368 s [racon::Polisher::polish] generating consensus [===> ] 0.081280 s [racon::Polisher::polish] generating consensus [====> ] 0.100669 s [racon::Polisher::polish] generating consensus [=====> ] 0.115124 s [racon::Polisher::polish] generating consensus [======> ] 0.128685 s [racon::Polisher::polish] generating consensus [=======> ] 0.145532 s [racon::Polisher::polish] generating consensus [========> ] 0.159916 s [racon::Polisher::polish] generating consensus [=========> ] 0.177078 s [racon::Polisher::polish] generating consensus [==========> ] 0.205912 s [racon::Polisher::polish] generating consensus [===========> ] 0.240562 s [racon::Polisher::polish] generating consensus [============> ] 0.282587 s [racon::Polisher::polish] generating consensus [=============> ] 0.343494 s [racon::Polisher::polish] generating consensus [==============> ] 0.389080 s [racon::Polisher::polish] generating consensus [===============> ] 0.433744 s [racon::Polisher::polish] generating consensus [================> ] 0.477599 s [racon::Polisher::polish] generating consensus [=================> ] 0.520298 s [racon::Polisher::polish] generating consensus [==================> ] 0.545129 s [racon::Polisher::polish] generating consensus [===================>] 0.573858 s [racon::Polisher::polish] generating consensus [====================] 0.739476 s [racon::Polisher::] total = 1.020402 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1031 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000364 s [racon::Polisher::initialize] loaded sequences 0.026442 s [racon::Polisher::initialize] loaded overlaps 0.015661 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.005136 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005336 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005596 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005947 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006119 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006321 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006605 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007086 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007214 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007395 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007660 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008138 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008306 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008627 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008749 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008941 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008947 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009036 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009121 s [racon::Polisher::initialize] transformed data into windows 0.001393 s [racon::Polisher::polish] generating consensus [=> ] 0.056754 s [racon::Polisher::polish] generating consensus [==> ] 0.091025 s [racon::Polisher::polish] generating consensus [===> ] 0.119195 s [racon::Polisher::polish] generating consensus [====> ] 0.136169 s [racon::Polisher::polish] generating consensus [=====> ] 0.145958 s [racon::Polisher::polish] generating consensus [======> ] 0.156117 s [racon::Polisher::polish] generating consensus [=======> ] 0.166340 s [racon::Polisher::polish] generating consensus [========> ] 0.178094 s [racon::Polisher::polish] generating consensus [=========> ] 0.191489 s [racon::Polisher::polish] generating consensus [==========> ] 0.209909 s [racon::Polisher::polish] generating consensus [===========> ] 0.235358 s [racon::Polisher::polish] generating consensus [============> ] 0.269894 s [racon::Polisher::polish] generating consensus [=============> ] 0.316051 s [racon::Polisher::polish] generating consensus [==============> ] 0.363253 s [racon::Polisher::polish] generating consensus [===============> ] 0.404499 s [racon::Polisher::polish] generating consensus [================> ] 0.429487 s [racon::Polisher::polish] generating consensus [=================> ] 0.463146 s [racon::Polisher::polish] generating consensus [==================> ] 0.503539 s [racon::Polisher::polish] generating consensus [===================>] 0.522655 s [racon::Polisher::polish] generating consensus [====================] 0.570208 s [racon::Polisher::] total = 0.649323 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (654 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000756 s [racon::Polisher::initialize] loaded sequences 0.024615 s [racon::Polisher::initialize] loaded overlaps 0.026898 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.003235 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003464 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003755 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003989 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004162 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004346 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004707 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005256 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005438 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005702 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006014 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006022 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006138 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.006176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.006184 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.006190 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006223 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006371 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006378 s [racon::Polisher::initialize] transformed data into windows 0.000447 s [racon::Polisher::polish] generating consensus [=> ] 0.060231 s [racon::Polisher::polish] generating consensus [==> ] 0.101675 s [racon::Polisher::polish] generating consensus [===> ] 0.132404 s [racon::Polisher::polish] generating consensus [====> ] 0.150696 s [racon::Polisher::polish] generating consensus [=====> ] 0.163872 s [racon::Polisher::polish] generating consensus [======> ] 0.176439 s [racon::Polisher::polish] generating consensus [=======> ] 0.189785 s [racon::Polisher::polish] generating consensus [========> ] 0.206100 s [racon::Polisher::polish] generating consensus [=========> ] 0.222434 s [racon::Polisher::polish] generating consensus [==========> ] 0.247208 s [racon::Polisher::polish] generating consensus [===========> ] 0.278408 s [racon::Polisher::polish] generating consensus [============> ] 0.318029 s [racon::Polisher::polish] generating consensus [=============> ] 0.367735 s [racon::Polisher::polish] generating consensus [==============> ] 0.419010 s [racon::Polisher::polish] generating consensus [===============> ] 0.459028 s [racon::Polisher::polish] generating consensus [================> ] 0.499995 s [racon::Polisher::polish] generating consensus [=================> ] 0.542554 s [racon::Polisher::polish] generating consensus [==================> ] 0.564019 s [racon::Polisher::polish] generating consensus [===================>] 0.588650 s [racon::Polisher::polish] generating consensus [====================] 0.719401 s [racon::Polisher::] total = 0.795738 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (797 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000971 s [racon::Polisher::initialize] loaded sequences 0.052791 s [racon::Polisher::initialize] loaded overlaps 0.000302 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042002 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057804 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.069804 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.083473 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.091296 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.096727 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.113946 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.136323 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148017 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.167779 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183909 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186775 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.201396 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207637 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.229118 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.233144 s [racon::Polisher::initialize] aligning overlaps [====================] 0.240492 s [racon::Polisher::initialize] transformed data into windows 0.001302 s [racon::Polisher::polish] generating consensus [=> ] 0.091651 s [racon::Polisher::polish] generating consensus [==> ] 0.096599 s [racon::Polisher::polish] generating consensus [===> ] 0.172270 s [racon::Polisher::polish] generating consensus [====> ] 0.172638 s [racon::Polisher::polish] generating consensus [=====> ] 0.212643 s [racon::Polisher::polish] generating consensus [======> ] 0.212673 s [racon::Polisher::polish] generating consensus [=======> ] 0.246186 s [racon::Polisher::polish] generating consensus [========> ] 0.246232 s [racon::Polisher::polish] generating consensus [=========> ] 0.303999 s [racon::Polisher::polish] generating consensus [==========> ] 0.319187 s [racon::Polisher::polish] generating consensus [===========> ] 0.407179 s [racon::Polisher::polish] generating consensus [============> ] 0.439006 s [racon::Polisher::polish] generating consensus [=============> ] 0.588171 s [racon::Polisher::polish] generating consensus [==============> ] 0.611382 s [racon::Polisher::polish] generating consensus [===============> ] 0.702385 s [racon::Polisher::polish] generating consensus [================> ] 0.714545 s [racon::Polisher::polish] generating consensus [=================> ] 0.803576 s [racon::Polisher::polish] generating consensus [==================> ] 0.803611 s [racon::Polisher::polish] generating consensus [===================>] 0.887524 s [racon::Polisher::polish] generating consensus [====================] 1.065365 s [racon::Polisher::] total = 1.385889 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1406 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000974 s [racon::Polisher::initialize] loaded sequences 0.057574 s [racon::Polisher::initialize] loaded overlaps 0.000322 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.043961 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088999 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097979 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.121719 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.135836 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139772 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147231 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.157089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169116 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.175588 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183882 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194935 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214534 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219294 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226961 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.235017 s [racon::Polisher::initialize] aligning overlaps [====================] 0.242914 s [racon::Polisher::initialize] transformed data into windows 0.001630 s [racon::Polisher::polish] generating consensus [=> ] 0.023711 s [racon::Polisher::polish] generating consensus [==> ] 0.045684 s [racon::Polisher::polish] generating consensus [===> ] 0.063741 s [racon::Polisher::polish] generating consensus [====> ] 0.094175 s [racon::Polisher::polish] generating consensus [=====> ] 0.101293 s [racon::Polisher::polish] generating consensus [======> ] 0.112267 s [racon::Polisher::polish] generating consensus [=======> ] 0.122535 s [racon::Polisher::polish] generating consensus [========> ] 0.132583 s [racon::Polisher::polish] generating consensus [=========> ] 0.141723 s [racon::Polisher::polish] generating consensus [==========> ] 0.165575 s [racon::Polisher::polish] generating consensus [===========> ] 0.188876 s [racon::Polisher::polish] generating consensus [============> ] 0.222616 s [racon::Polisher::polish] generating consensus [=============> ] 0.263754 s [racon::Polisher::polish] generating consensus [==============> ] 0.305643 s [racon::Polisher::polish] generating consensus [===============> ] 0.341705 s [racon::Polisher::polish] generating consensus [================> ] 0.365316 s [racon::Polisher::polish] generating consensus [=================> ] 0.396710 s [racon::Polisher::polish] generating consensus [==================> ] 0.415443 s [racon::Polisher::polish] generating consensus [===================>] 0.434070 s [racon::Polisher::polish] generating consensus [====================] 0.516301 s [racon::Polisher::] total = 0.844289 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (846 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.060722 s [racon::Polisher::initialize] loaded sequences 0.035801 s [racon::Polisher::initialize] loaded overlaps 0.008053 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.042604 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057074 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.071610 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.099948 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102742 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.117723 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125767 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138175 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148449 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176603 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188368 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202456 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.211331 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226119 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235316 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.242742 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.246943 s [racon::Polisher::initialize] aligning overlaps [====================] 0.261708 s [racon::Polisher::initialize] transformed data into windows 0.006764 s [racon::Polisher::polish] generating consensus [=> ] 0.021947 s [racon::Polisher::polish] generating consensus [==> ] 0.043407 s [racon::Polisher::polish] generating consensus [===> ] 0.064685 s [racon::Polisher::polish] generating consensus [====> ] 0.064920 s [racon::Polisher::polish] generating consensus [=====> ] 0.080052 s [racon::Polisher::polish] generating consensus [======> ] 0.090056 s [racon::Polisher::polish] generating consensus [=======> ] 0.104541 s [racon::Polisher::polish] generating consensus [========> ] 0.107985 s [racon::Polisher::polish] generating consensus [=========> ] 0.135573 s [racon::Polisher::polish] generating consensus [==========> ] 0.147698 s [racon::Polisher::polish] generating consensus [===========> ] 0.158353 s [racon::Polisher::polish] generating consensus [============> ] 0.162285 s [racon::Polisher::polish] generating consensus [=============> ] 0.174523 s [racon::Polisher::polish] generating consensus [==============> ] 0.174842 s [racon::Polisher::polish] generating consensus [===============> ] 0.202885 s [racon::Polisher::polish] generating consensus [================> ] 0.203059 s [racon::Polisher::polish] generating consensus [=================> ] 0.254369 s [racon::Polisher::polish] generating consensus [==================> ] 0.272748 s [racon::Polisher::polish] generating consensus [===================>] 0.285411 s [racon::Polisher::polish] generating consensus [====================] 0.287409 s [racon::Polisher::] total = 0.660924 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (662 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.026237 s [racon::Polisher::initialize] loaded sequences 0.026146 s [racon::Polisher::initialize] loaded overlaps 0.006938 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.297599 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.455676 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.600339 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.812442 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.001310 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.131576 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.307790 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.535242 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743675 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953140 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.113943 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.342298 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.573651 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.763636 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029707 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.271737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484105 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.712026 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967078 s [racon::Polisher::initialize] aligning overlaps [====================] 4.156447 s [racon::Polisher::initialize] transformed data into windows 0.085425 s [racon::Polisher::polish] generating consensus [=> ] 0.968043 s [racon::Polisher::polish] generating consensus [==> ] 1.648972 s [racon::Polisher::polish] generating consensus [===> ] 2.380784 s [racon::Polisher::polish] generating consensus [====> ] 2.983465 s [racon::Polisher::polish] generating consensus [=====> ] 3.637553 s [racon::Polisher::polish] generating consensus [======> ] 4.405981 s [racon::Polisher::polish] generating consensus [=======> ] 5.183578 s [racon::Polisher::polish] generating consensus [========> ] 5.747647 s [racon::Polisher::polish] generating consensus [=========> ] 6.489451 s [racon::Polisher::polish] generating consensus [==========> ] 7.349881 s [racon::Polisher::polish] generating consensus [===========> ] 8.058886 s [racon::Polisher::polish] generating consensus [============> ] 8.844954 s [racon::Polisher::polish] generating consensus [=============> ] 9.517978 s [racon::Polisher::polish] generating consensus [==============> ] 10.243179 s [racon::Polisher::polish] generating consensus [===============> ] 11.032924 s [racon::Polisher::polish] generating consensus [================> ] 11.464666 s [racon::Polisher::polish] generating consensus [=================> ] 12.343865 s [racon::Polisher::polish] generating consensus [==================> ] 13.165659 s [racon::Polisher::polish] generating consensus [===================>] 13.951403 s [racon::Polisher::polish] generating consensus [====================] 14.457003 s [racon::Polisher::] total = 18.762415 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18763 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.015531 s [racon::Polisher::initialize] loaded sequences 0.013416 s [racon::Polisher::initialize] loaded overlaps 0.007848 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.260923 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.430366 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.588310 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.801870 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.990732 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.117775 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.294546 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.521845 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.729655 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.941314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.100458 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.329171 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.561103 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.751367 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.018052 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.260189 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472132 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.699973 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.938719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143906 s [racon::Polisher::initialize] transformed data into windows 0.011485 s [racon::Polisher::polish] generating consensus [=> ] 1.267138 s [racon::Polisher::polish] generating consensus [==> ] 2.251257 s [racon::Polisher::polish] generating consensus [===> ] 3.224598 s [racon::Polisher::polish] generating consensus [====> ] 3.963828 s [racon::Polisher::polish] generating consensus [=====> ] 4.852840 s [racon::Polisher::polish] generating consensus [======> ] 5.833324 s [racon::Polisher::polish] generating consensus [=======> ] 6.886296 s [racon::Polisher::polish] generating consensus [========> ] 7.647147 s [racon::Polisher::polish] generating consensus [=========> ] 8.651785 s [racon::Polisher::polish] generating consensus [==========> ] 9.820590 s [racon::Polisher::polish] generating consensus [===========> ] 10.781640 s [racon::Polisher::polish] generating consensus [============> ] 11.840948 s [racon::Polisher::polish] generating consensus [=============> ] 12.827738 s [racon::Polisher::polish] generating consensus [==============> ] 13.832092 s [racon::Polisher::polish] generating consensus [===============> ] 14.830374 s [racon::Polisher::polish] generating consensus [================> ] 15.372688 s [racon::Polisher::polish] generating consensus [=================> ] 16.693851 s [racon::Polisher::polish] generating consensus [==================> ] 17.856922 s [racon::Polisher::polish] generating consensus [===================>] 18.875561 s [racon::Polisher::polish] generating consensus [====================] 19.775223 s [racon::Polisher::] total = 23.969221 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (23970 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.067877 s [racon::Polisher::initialize] loaded sequences 0.038218 s [racon::Polisher::initialize] loaded overlaps 0.007465 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.294096 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452436 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.606030 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819137 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003908 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.133578 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.308946 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.534467 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.741822 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.950560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.110716 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.338437 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.569025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.760533 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.023102 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.264084 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.474654 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709227 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.969885 s [racon::Polisher::initialize] aligning overlaps [====================] 4.171119 s [racon::Polisher::initialize] transformed data into windows 0.111243 s [racon::Polisher::polish] generating consensus [=> ] 0.979338 s [racon::Polisher::polish] generating consensus [==> ] 1.655764 s [racon::Polisher::polish] generating consensus [===> ] 2.373849 s [racon::Polisher::polish] generating consensus [====> ] 2.964068 s [racon::Polisher::polish] generating consensus [=====> ] 3.606440 s [racon::Polisher::polish] generating consensus [======> ] 4.361442 s [racon::Polisher::polish] generating consensus [=======> ] 5.124835 s [racon::Polisher::polish] generating consensus [========> ] 5.679185 s [racon::Polisher::polish] generating consensus [=========> ] 6.393159 s [racon::Polisher::polish] generating consensus [==========> ] 7.233715 s [racon::Polisher::polish] generating consensus [===========> ] 7.932189 s [racon::Polisher::polish] generating consensus [============> ] 8.697083 s [racon::Polisher::polish] generating consensus [=============> ] 9.362602 s [racon::Polisher::polish] generating consensus [==============> ] 10.076029 s [racon::Polisher::polish] generating consensus [===============> ] 10.853037 s [racon::Polisher::polish] generating consensus [================> ] 11.277530 s [racon::Polisher::polish] generating consensus [=================> ] 12.135240 s [racon::Polisher::polish] generating consensus [==================> ] 12.939017 s [racon::Polisher::polish] generating consensus [===================>] 13.710610 s [racon::Polisher::polish] generating consensus [====================] 14.313247 s [racon::Polisher::] total = 18.718000 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18719 ms) [----------] 10 tests from RaconPolishingTest (67745 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (67758 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/718479 and its subdirectories I: Current time: Fri Feb 21 19:46:48 -12 2025 I: pbuilder-time-stamp: 1740210408 Sat Feb 22 07:46:50 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sat Feb 22 07:46:50 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sat Feb 22 07:46:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Feb 22 07:46:50 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-NKe2lJ' ==================================================================================== Fri Mar 27 14:09:51 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 racon unstable /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0 1.5.0-3" as arguments. Fri Mar 27 14:09:51 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-q7l9lMYg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 14:09:51 UTC 2026 I: Downloading source for unstable/racon=1.5.0-3 Reading package lists... NOTICE: 'racon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/racon.git Please use: git clone https://salsa.debian.org/med-team/racon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3107 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (dsc) [2106 B] Get:2 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (tar) [3084 kB] Get:3 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (diff) [20.7 kB] Fetched 3107 kB in 0s (59.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'racon' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/racon.git Please use: git clone https://salsa.debian.org/med-team/racon.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3107 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (dsc) [2106 B] Get:2 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (tar) [3084 kB] Get:3 http://deb.debian.org/debian unstable/main racon 1.5.0-3 (diff) [20.7 kB] Fetched 3107 kB in 0s (59.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building racon in unstable on arm64 on codethink03-arm64 now. Date: Fri Mar 27 14:09:52 GMT 2026 Date UTC: Fri Mar 27 14:09:52 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_9KAR + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' racon = debian-installer -o racon = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' racon = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_9KAR --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2 --logfile b2/build.log racon_1.5.0-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Mar 28 04:09:52 +14 2026 I: pbuilder-time-stamp: 1774620592 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [racon_1.5.0-3.dsc] I: copying [./racon_1.5.0.orig.tar.gz] I: copying [./racon_1.5.0-3.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./racon_1.5.0-3.dsc: unsupported subcommand dpkg-source: info: extracting racon in racon-1.5.0 dpkg-source: info: unpacking racon_1.5.0.orig.tar.gz dpkg-source: info: unpacking racon_1.5.0-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying use_debian_packaged_libs.patch dpkg-source: info: applying remove_buildpath dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Mar 27 14:09 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=4b95aa564b124b27984fae26d54ad50f LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1445502 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_9KAR --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2 --logfile b2/build.log racon_1.5.0-3.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, libgtest-dev, libbioparser-dev, libcereal-dev, libedlib-dev (>= 1.2.7-3~), libspoa-dev, libthread-pool-dev (>= 3.0.2), rampler dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on libgtest-dev; however: Package libgtest-dev is not installed. pbuilder-satisfydepends-dummy depends on libbioparser-dev; however: Package libbioparser-dev is not installed. pbuilder-satisfydepends-dummy depends on libcereal-dev; however: Package libcereal-dev is not installed. pbuilder-satisfydepends-dummy depends on libedlib-dev (>= 1.2.7-3~); however: Package libedlib-dev is not installed. pbuilder-satisfydepends-dummy depends on libspoa-dev; however: Package libspoa-dev is not installed. pbuilder-satisfydepends-dummy depends on libthread-pool-dev (>= 3.0.2); however: Package libthread-pool-dev is not installed. pbuilder-satisfydepends-dummy depends on rampler; however: Package rampler is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} googletest{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbioparser-dev{a} libbiosoup-dev{a} libbrotli1{a} libcereal-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libedlib-dev{a} libedlib1{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgtest-dev{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libspoa-dev{a} libspoa7.0.0{a} libssh2-1t64{a} libtasn1-6{a} libthread-pool-dev{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} po-debconf{a} procps{a} rampler{a} rapidjson-dev{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 73 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 156 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-4 [92.1 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-3 [862 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.5-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.6.0-2 [60.5 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.12.1-2 [340 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.5-2 [9907 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-3 [539 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 55 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 googletest all 1.16.0-1 [517 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbiosoup-dev all 0.11.0-2 [8000 B] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbioparser-dev all 3.1.0-1 [9108 B] Get: 65 http://deb.debian.org/debian unstable/main arm64 rapidjson-dev all 1.1.0+dfsg2-7.3 [98.0 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libcereal-dev arm64 1.3.2+dfsg-5 [221 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libedlib1 arm64 1.2.7-6+b2 [17.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libedlib-dev arm64 1.2.7-6+b2 [22.7 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libgtest-dev arm64 1.16.0-1 [246 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libspoa7.0.0 arm64 4.1.4-2+b1 [53.3 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] Fetched 40.1 MB in 0s (114 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. 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Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../28-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. 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Selecting previously unselected package libgtest-dev:arm64. Preparing to unpack .../68-libgtest-dev_1.16.0-1_arm64.deb ... Unpacking libgtest-dev:arm64 (1.16.0-1) ... Selecting previously unselected package libspoa7.0.0:arm64. Preparing to unpack .../69-libspoa7.0.0_4.1.4-2+b1_arm64.deb ... Unpacking libspoa7.0.0:arm64 (4.1.4-2+b1) ... Selecting previously unselected package libspoa-dev:arm64. Preparing to unpack .../70-libspoa-dev_4.1.4-2+b1_arm64.deb ... Unpacking libspoa-dev:arm64 (4.1.4-2+b1) ... Selecting previously unselected package libthread-pool-dev. Preparing to unpack .../71-libthread-pool-dev_4.0.0-2_arm64.deb ... Unpacking libthread-pool-dev (4.0.0-2) ... Selecting previously unselected package rampler. Preparing to unpack .../72-rampler_2.1.1-1+b1_arm64.deb ... Unpacking rampler (2.1.1-1+b1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-4) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.50.0-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up googletest (1.16.0-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up rapidjson-dev (1.1.0+dfsg2-7.3) ... Setting up libkrb5support0:arm64 (1.21.3-4) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Setting up libbiosoup-dev (0.11.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up rampler (2.1.1-1+b1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up libthread-pool-dev (4.0.0-2) ... Setting up libspoa7.0.0:arm64 (4.1.4-2+b1) ... Setting up autopoint (0.23.1-1) ... Setting up libk5crypto3:arm64 (1.21.3-4) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.6.0-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libedlib1:arm64 (1.2.7-6+b2) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libbioparser-dev (3.1.0-1) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up cmake-data (3.31.5-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-4) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libldap2:arm64 (2.6.9+dfsg-1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libgtest-dev:arm64 (1.16.0-1) ... Setting up libtool (2.5.4-3) ... Setting up libcereal-dev (1.3.2+dfsg-5) ... Setting up libidn2-0:arm64 (2.3.7-2+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-4) ... Setting up libedlib-dev:arm64 (1.2.7-6+b2) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libspoa-dev:arm64 (4.1.4-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libcurl4t64:arm64 (8.12.1-2) ... Setting up debhelper (13.24.1) ... Setting up cmake (3.31.5-2) ... Processing triggers for libc-bin (2.40-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=cmake dh_auto_clean -O--buildsystem=cmake dh_autoreconf_clean -O--buildsystem=cmake dh_clean -O--buildsystem=cmake debian/rules binary dh binary --buildsystem=cmake dh_update_autotools_config -O--buildsystem=cmake dh_autoreconf -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' dh_auto_configure -- -Dracon_build_tests=ON -Dracon_build_wrapper=ON cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -Dracon_build_tests=ON -Dracon_build_wrapper=ON .. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY -- Build files have been written to: /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu # Somehow the means in the patch for CMakeLists.txt to replace -lpthread by -pthread to not work # Just hack it here sed -i 's/-lpthread/-pthread/' obj-*/CMakeFiles/racon_test.dir/link.txt make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' dh_auto_build -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/depend make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 10%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o [ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o [ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF 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CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp [ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o [ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 /usr/bin/ar qc lib/libracon.a CMakeFiles/racon.dir/src/logger.cpp.o CMakeFiles/racon.dir/src/polisher.cpp.o CMakeFiles/racon.dir/src/overlap.cpp.o CMakeFiles/racon.dir/src/sequence.cpp.o CMakeFiles/racon.dir/src/window.cpp.o /usr/bin/ranlib lib/libracon.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 60%] Built target racon make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/depend make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/depend make[3]: 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"--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp [ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o /usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [ 90%] Built target racon_exe [100%] Linking CXX executable bin/racon_test /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_test.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_test.dir/link.d CMakeFiles/racon_test.dir/test/racon_test.cpp.o -o bin/racon_test lib/libracon.a -ledlib -lspoa -pthread -lz /usr/lib/aarch64-linux-gnu/libgtest_main.a /usr/lib/aarch64-linux-gnu/libgtest.a make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' [100%] Built target racon_test make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/racon-1.5.0' cd test && ../obj-*/bin/racon_test Running main() from ./googletest/src/gtest_main.cc [==========] Running 15 tests from 2 test suites. [----------] Global test environment set-up. [----------] 5 tests from RaconInitializeTest [ RUN ] RaconInitializeTest.PolisherTypeError [ OK ] RaconInitializeTest.PolisherTypeError (1 ms) [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError [ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError [ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) [----------] 5 tests from RaconInitializeTest (14 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities [racon::Polisher::initialize] loaded target sequences 0.001072 s [racon::Polisher::initialize] loaded sequences 0.063562 s [racon::Polisher::initialize] loaded overlaps 0.000352 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.049688 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068818 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.082172 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096372 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.105081 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.110559 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131936 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.144567 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.150017 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157695 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167722 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.181759 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.186032 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.196368 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.209509 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.229425 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235932 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.243165 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.249252 s [racon::Polisher::initialize] aligning overlaps [====================] 0.256275 s [racon::Polisher::initialize] transformed data into windows 0.003850 s [racon::Polisher::polish] generating consensus [=> ] 0.024923 s [racon::Polisher::polish] generating consensus [==> ] 0.067180 s [racon::Polisher::polish] generating consensus [===> ] 0.087905 s [racon::Polisher::polish] generating consensus [====> ] 0.102051 s [racon::Polisher::polish] generating consensus [=====> ] 0.110018 s [racon::Polisher::polish] generating consensus [======> ] 0.118909 s [racon::Polisher::polish] generating consensus [=======> ] 0.127862 s [racon::Polisher::polish] generating consensus [========> ] 0.141922 s [racon::Polisher::polish] generating consensus [=========> ] 0.158174 s [racon::Polisher::polish] generating consensus [==========> ] 0.177999 s [racon::Polisher::polish] generating consensus [===========> ] 0.206442 s [racon::Polisher::polish] generating consensus [============> ] 0.229367 s [racon::Polisher::polish] generating consensus [=============> ] 0.274246 s [racon::Polisher::polish] generating consensus [==============> ] 0.322530 s [racon::Polisher::polish] generating consensus [===============> ] 0.356748 s [racon::Polisher::polish] generating consensus [================> ] 0.381262 s [racon::Polisher::polish] generating consensus [=================> ] 0.412776 s [racon::Polisher::polish] generating consensus [==================> ] 0.430909 s [racon::Polisher::polish] generating consensus [===================>] 0.455335 s [racon::Polisher::polish] generating consensus [====================] 0.550038 s [racon::Polisher::] total = 0.902578 s [ OK ] RaconPolishingTest.ConsensusWithQualities (916 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities [racon::Polisher::initialize] loaded target sequences 0.000991 s [racon::Polisher::initialize] loaded sequences 0.029070 s [racon::Polisher::initialize] loaded overlaps 0.000391 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.041894 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060499 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075164 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089004 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097433 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.103031 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.114572 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.136027 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139843 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147671 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154349 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169455 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.173776 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183941 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.195577 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214872 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219620 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.223552 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.230332 s [racon::Polisher::initialize] aligning overlaps [====================] 0.237203 s [racon::Polisher::initialize] transformed data into windows 0.000638 s [racon::Polisher::polish] generating consensus [=> ] 0.027084 s [racon::Polisher::polish] generating consensus [==> ] 0.058248 s [racon::Polisher::polish] generating consensus [===> ] 0.081053 s [racon::Polisher::polish] generating consensus [====> ] 0.100161 s [racon::Polisher::polish] generating consensus [=====> ] 0.114596 s [racon::Polisher::polish] generating consensus [======> ] 0.128168 s [racon::Polisher::polish] generating consensus [=======> ] 0.144975 s [racon::Polisher::polish] generating consensus [========> ] 0.159359 s [racon::Polisher::polish] generating consensus [=========> ] 0.176460 s [racon::Polisher::polish] generating consensus [==========> ] 0.209737 s [racon::Polisher::polish] generating consensus [===========> ] 0.244817 s [racon::Polisher::polish] generating consensus [============> ] 0.288270 s [racon::Polisher::polish] generating consensus [=============> ] 0.350735 s [racon::Polisher::polish] generating consensus [==============> ] 0.395148 s [racon::Polisher::polish] generating consensus [===============> ] 0.441606 s [racon::Polisher::polish] generating consensus [================> ] 0.477648 s [racon::Polisher::polish] generating consensus [=================> ] 0.519281 s [racon::Polisher::polish] generating consensus [==================> ] 0.544535 s [racon::Polisher::polish] generating consensus [===================>] 0.573263 s [racon::Polisher::polish] generating consensus [====================] 0.742427 s [racon::Polisher::] total = 1.019546 s [ OK ] RaconPolishingTest.ConsensusWithoutQualities (1028 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments [racon::Polisher::initialize] loaded target sequences 0.000361 s [racon::Polisher::initialize] loaded sequences 0.026149 s [racon::Polisher::initialize] loaded overlaps 0.015588 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.005282 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005535 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005815 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.006135 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006280 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006465 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006740 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007226 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007376 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007824 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008141 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008163 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008288 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008477 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008819 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008926 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.009087 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009165 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009198 s [racon::Polisher::initialize] transformed data into windows 0.001400 s [racon::Polisher::polish] generating consensus [=> ] 0.057767 s [racon::Polisher::polish] generating consensus [==> ] 0.093456 s [racon::Polisher::polish] generating consensus [===> ] 0.122056 s [racon::Polisher::polish] generating consensus [====> ] 0.136850 s [racon::Polisher::polish] generating consensus [=====> ] 0.148418 s [racon::Polisher::polish] generating consensus [======> ] 0.158507 s [racon::Polisher::polish] generating consensus [=======> ] 0.168643 s [racon::Polisher::polish] generating consensus [========> ] 0.180335 s [racon::Polisher::polish] generating consensus [=========> ] 0.193655 s [racon::Polisher::polish] generating consensus [==========> ] 0.209706 s [racon::Polisher::polish] generating consensus [===========> ] 0.236370 s [racon::Polisher::polish] generating consensus [============> ] 0.271100 s [racon::Polisher::polish] generating consensus [=============> ] 0.316936 s [racon::Polisher::polish] generating consensus [==============> ] 0.363281 s [racon::Polisher::polish] generating consensus [===============> ] 0.395592 s [racon::Polisher::polish] generating consensus [================> ] 0.419545 s [racon::Polisher::polish] generating consensus [=================> ] 0.452486 s [racon::Polisher::polish] generating consensus [==================> ] 0.471323 s [racon::Polisher::polish] generating consensus [===================>] 0.487942 s [racon::Polisher::polish] generating consensus [====================] 0.572327 s [racon::Polisher::] total = 0.651325 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (656 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments [racon::Polisher::initialize] loaded target sequences 0.000951 s [racon::Polisher::initialize] loaded sequences 0.031551 s [racon::Polisher::initialize] loaded overlaps 0.031543 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.004865 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005618 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.006470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.006842 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006862 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006875 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006886 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006898 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006909 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006920 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006932 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008177 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008193 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008203 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008215 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008610 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008737 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008818 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009023 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009035 s [racon::Polisher::initialize] transformed data into windows 0.000669 s [racon::Polisher::polish] generating consensus [=> ] 0.065975 s [racon::Polisher::polish] generating consensus [==> ] 0.105936 s [racon::Polisher::polish] generating consensus [===> ] 0.132072 s [racon::Polisher::polish] generating consensus [====> ] 0.153498 s [racon::Polisher::polish] generating consensus [=====> ] 0.166129 s [racon::Polisher::polish] generating consensus [======> ] 0.175760 s [racon::Polisher::polish] generating consensus [=======> ] 0.189941 s [racon::Polisher::polish] generating consensus [========> ] 0.204452 s [racon::Polisher::polish] generating consensus [=========> ] 0.221748 s [racon::Polisher::polish] generating consensus [==========> ] 0.246810 s [racon::Polisher::polish] generating consensus [===========> ] 0.278126 s [racon::Polisher::polish] generating consensus [============> ] 0.316555 s [racon::Polisher::polish] generating consensus [=============> ] 0.376761 s [racon::Polisher::polish] generating consensus [==============> ] 0.422035 s [racon::Polisher::polish] generating consensus [===============> ] 0.462226 s [racon::Polisher::polish] generating consensus [================> ] 0.500190 s [racon::Polisher::polish] generating consensus [=================> ] 0.539269 s [racon::Polisher::polish] generating consensus [==================> ] 0.562973 s [racon::Polisher::polish] generating consensus [===================>] 0.587247 s [racon::Polisher::polish] generating consensus [====================] 0.729980 s [racon::Polisher::] total = 0.810317 s [ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (812 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow [racon::Polisher::initialize] loaded target sequences 0.000385 s [racon::Polisher::initialize] loaded sequences 0.027214 s [racon::Polisher::initialize] loaded overlaps 0.000225 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.024598 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.035172 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.045946 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.054559 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.064112 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.072904 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.093027 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102962 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.111085 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.118222 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.128158 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.136714 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.146083 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.150777 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.157198 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.169660 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.174432 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.183865 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.192645 s [racon::Polisher::initialize] aligning overlaps [====================] 0.206574 s [racon::Polisher::initialize] transformed data into windows 0.003562 s [racon::Polisher::polish] generating consensus [=> ] 0.091708 s [racon::Polisher::polish] generating consensus [==> ] 0.091894 s [racon::Polisher::polish] generating consensus [===> ] 0.172327 s [racon::Polisher::polish] generating consensus [====> ] 0.172379 s [racon::Polisher::polish] generating consensus [=====> ] 0.212928 s [racon::Polisher::polish] generating consensus [======> ] 0.212951 s [racon::Polisher::polish] generating consensus [=======> ] 0.246965 s [racon::Polisher::polish] generating consensus [========> ] 0.247004 s [racon::Polisher::polish] generating consensus [=========> ] 0.304453 s [racon::Polisher::polish] generating consensus [==========> ] 0.306371 s [racon::Polisher::polish] generating consensus [===========> ] 0.409139 s [racon::Polisher::polish] generating consensus [============> ] 0.425748 s [racon::Polisher::polish] generating consensus [=============> ] 0.590017 s [racon::Polisher::polish] generating consensus [==============> ] 0.596795 s [racon::Polisher::polish] generating consensus [===============> ] 0.703518 s [racon::Polisher::polish] generating consensus [================> ] 0.703565 s [racon::Polisher::polish] generating consensus [=================> ] 0.804865 s [racon::Polisher::polish] generating consensus [==================> ] 0.804914 s [racon::Polisher::polish] generating consensus [===================>] 0.890555 s [racon::Polisher::polish] generating consensus [====================] 1.076649 s [racon::Polisher::] total = 1.339455 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1349 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance [racon::Polisher::initialize] loaded target sequences 0.000977 s [racon::Polisher::initialize] loaded sequences 0.062530 s [racon::Polisher::initialize] loaded overlaps 0.000337 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.043351 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.063031 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.077889 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.094363 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104158 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.106722 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.124901 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.139955 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.143788 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.151692 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159973 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.173467 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.178618 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.187769 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199277 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.218854 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.223599 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.231254 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240423 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247178 s [racon::Polisher::initialize] transformed data into windows 0.003848 s [racon::Polisher::polish] generating consensus [=> ] 0.023892 s [racon::Polisher::polish] generating consensus [==> ] 0.045796 s [racon::Polisher::polish] generating consensus [===> ] 0.063552 s [racon::Polisher::polish] generating consensus [====> ] 0.078058 s [racon::Polisher::polish] generating consensus [=====> ] 0.088259 s [racon::Polisher::polish] generating consensus [======> ] 0.098507 s [racon::Polisher::polish] generating consensus [=======> ] 0.107939 s [racon::Polisher::polish] generating consensus [========> ] 0.119616 s [racon::Polisher::polish] generating consensus [=========> ] 0.134455 s [racon::Polisher::polish] generating consensus [==========> ] 0.150034 s [racon::Polisher::polish] generating consensus [===========> ] 0.177234 s [racon::Polisher::polish] generating consensus [============> ] 0.211786 s [racon::Polisher::polish] generating consensus [=============> ] 0.256594 s [racon::Polisher::polish] generating consensus [==============> ] 0.301975 s [racon::Polisher::polish] generating consensus [===============> ] 0.334450 s [racon::Polisher::polish] generating consensus [================> ] 0.356530 s [racon::Polisher::polish] generating consensus [=================> ] 0.386052 s [racon::Polisher::polish] generating consensus [==================> ] 0.402952 s [racon::Polisher::polish] generating consensus [===================>] 0.428424 s [racon::Polisher::polish] generating consensus [====================] 0.518804 s [racon::Polisher::] total = 0.857450 s [ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (859 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities [racon::Polisher::initialize] loaded target sequences 0.060287 s [racon::Polisher::initialize] loaded sequences 0.034733 s [racon::Polisher::initialize] loaded overlaps 0.008050 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.045693 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.072697 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.080391 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.092730 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.106121 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.117656 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.123687 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.130723 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139864 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.154716 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167306 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.175903 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.187842 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202785 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.212902 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226484 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.236650 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.254255 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.262343 s [racon::Polisher::initialize] aligning overlaps [====================] 0.266885 s [racon::Polisher::initialize] transformed data into windows 0.006756 s [racon::Polisher::polish] generating consensus [=> ] 0.021270 s [racon::Polisher::polish] generating consensus [==> ] 0.043277 s [racon::Polisher::polish] generating consensus [===> ] 0.064807 s [racon::Polisher::polish] generating consensus [====> ] 0.065163 s [racon::Polisher::polish] generating consensus [=====> ] 0.078286 s [racon::Polisher::polish] generating consensus [======> ] 0.086811 s [racon::Polisher::polish] generating consensus [=======> ] 0.101060 s [racon::Polisher::polish] generating consensus [========> ] 0.104450 s [racon::Polisher::polish] generating consensus [=========> ] 0.131460 s [racon::Polisher::polish] generating consensus [==========> ] 0.143529 s [racon::Polisher::polish] generating consensus [===========> ] 0.153812 s [racon::Polisher::polish] generating consensus [============> ] 0.157863 s [racon::Polisher::polish] generating consensus [=============> ] 0.170797 s [racon::Polisher::polish] generating consensus [==============> ] 0.171245 s [racon::Polisher::polish] generating consensus [===============> ] 0.198847 s [racon::Polisher::polish] generating consensus [================> ] 0.199084 s [racon::Polisher::polish] generating consensus [=================> ] 0.249840 s [racon::Polisher::polish] generating consensus [==================> ] 0.268203 s [racon::Polisher::polish] generating consensus [===================>] 0.286214 s [racon::Polisher::polish] generating consensus [====================] 0.288353 s [racon::Polisher::] total = 0.665565 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (667 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.067168 s [racon::Polisher::initialize] loaded sequences 0.038049 s [racon::Polisher::initialize] loaded overlaps 0.008508 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.306332 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.464168 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.617857 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.830851 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.015469 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.144880 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.320158 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.545812 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.752968 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.961415 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.121142 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.348625 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.578805 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.767656 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.032638 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.273298 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484402 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.714956 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.975719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.182910 s [racon::Polisher::initialize] transformed data into windows 0.092450 s [racon::Polisher::polish] generating consensus [=> ] 1.002056 s [racon::Polisher::polish] generating consensus [==> ] 1.673403 s [racon::Polisher::polish] generating consensus [===> ] 2.404453 s [racon::Polisher::polish] generating consensus [====> ] 3.007846 s [racon::Polisher::polish] generating consensus [=====> ] 3.660265 s [racon::Polisher::polish] generating consensus [======> ] 4.428097 s [racon::Polisher::polish] generating consensus [=======> ] 5.205942 s [racon::Polisher::polish] generating consensus [========> ] 5.768516 s [racon::Polisher::polish] generating consensus [=========> ] 6.493306 s [racon::Polisher::polish] generating consensus [==========> ] 7.347908 s [racon::Polisher::polish] generating consensus [===========> ] 8.056088 s [racon::Polisher::polish] generating consensus [============> ] 8.835230 s [racon::Polisher::polish] generating consensus [=============> ] 9.508975 s [racon::Polisher::polish] generating consensus [==============> ] 10.235483 s [racon::Polisher::polish] generating consensus [===============> ] 11.024156 s [racon::Polisher::polish] generating consensus [================> ] 11.456040 s [racon::Polisher::polish] generating consensus [=================> ] 12.327701 s [racon::Polisher::polish] generating consensus [==================> ] 13.142541 s [racon::Polisher::polish] generating consensus [===================>] 13.927392 s [racon::Polisher::polish] generating consensus [====================] 14.515029 s [racon::Polisher::] total = 18.909165 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18910 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull [racon::Polisher::initialize] loaded target sequences 0.031769 s [racon::Polisher::initialize] loaded sequences 0.026737 s [racon::Polisher::initialize] loaded overlaps 0.012146 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.256131 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.428556 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.585526 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.798745 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.983717 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.113463 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.289203 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.515276 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.722921 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.931857 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.092299 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.320625 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.551685 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.741369 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.007302 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.248687 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.460171 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.687179 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.925025 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143587 s [racon::Polisher::initialize] transformed data into windows 0.022265 s [racon::Polisher::polish] generating consensus [=> ] 1.260905 s [racon::Polisher::polish] generating consensus [==> ] 2.246560 s [racon::Polisher::polish] generating consensus [===> ] 3.223575 s [racon::Polisher::polish] generating consensus [====> ] 3.968227 s [racon::Polisher::polish] generating consensus [=====> ] 4.860146 s [racon::Polisher::polish] generating consensus [======> ] 5.872154 s [racon::Polisher::polish] generating consensus [=======> ] 6.932877 s [racon::Polisher::polish] generating consensus [========> ] 7.879904 s [racon::Polisher::polish] generating consensus [=========> ] 8.817384 s [racon::Polisher::polish] generating consensus [==========> ] 9.943157 s [racon::Polisher::polish] generating consensus [===========> ] 10.889327 s [racon::Polisher::polish] generating consensus [============> ] 11.985046 s [racon::Polisher::polish] generating consensus [=============> ] 12.955909 s [racon::Polisher::polish] generating consensus [==============> ] 14.006538 s [racon::Polisher::polish] generating consensus [===============> ] 15.039473 s [racon::Polisher::polish] generating consensus [================> ] 15.623701 s [racon::Polisher::polish] generating consensus [=================> ] 16.900095 s [racon::Polisher::polish] generating consensus [==================> ] 18.079581 s [racon::Polisher::polish] generating consensus [===================>] 19.108571 s [racon::Polisher::polish] generating consensus [====================] 19.881678 s [racon::Polisher::] total = 24.121744 s [ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24123 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap [racon::Polisher::initialize] loaded target sequences 0.069648 s [racon::Polisher::initialize] loaded sequences 0.040339 s [racon::Polisher::initialize] loaded overlaps 0.007867 s [racon::Polisher::initialize] aligning overlaps [=> ] 0.295849 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.454386 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.611141 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.824167 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.009026 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.139038 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.314095 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.539856 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.747267 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.956047 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.116182 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.344045 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.574778 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.764064 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029655 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.270839 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.482141 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709627 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.954100 s [racon::Polisher::initialize] aligning overlaps [====================] 4.158420 s [racon::Polisher::initialize] transformed data into windows 0.088761 s [racon::Polisher::polish] generating consensus [=> ] 0.926842 s [racon::Polisher::polish] generating consensus [==> ] 1.594304 s [racon::Polisher::polish] generating consensus [===> ] 2.325683 s [racon::Polisher::polish] generating consensus [====> ] 2.929058 s [racon::Polisher::polish] generating consensus [=====> ] 3.583869 s [racon::Polisher::polish] generating consensus [======> ] 4.352518 s [racon::Polisher::polish] generating consensus [=======> ] 5.129180 s [racon::Polisher::polish] generating consensus [========> ] 5.695831 s [racon::Polisher::polish] generating consensus [=========> ] 6.424228 s [racon::Polisher::polish] generating consensus [==========> ] 7.280235 s [racon::Polisher::polish] generating consensus [===========> ] 7.990224 s [racon::Polisher::polish] generating consensus [============> ] 8.768495 s [racon::Polisher::polish] generating consensus [=============> ] 9.443841 s [racon::Polisher::polish] generating consensus [==============> ] 10.169102 s [racon::Polisher::polish] generating consensus [===============> ] 10.955019 s [racon::Polisher::polish] generating consensus [================> ] 11.384469 s [racon::Polisher::polish] generating consensus [=================> ] 12.252713 s [racon::Polisher::polish] generating consensus [==================> ] 13.066805 s [racon::Polisher::polish] generating consensus [===================>] 13.848154 s [racon::Polisher::polish] generating consensus [====================] 14.432951 s [racon::Polisher::] total = 18.801584 s [ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18803 ms) [----------] 10 tests from RaconPolishingTest (68126 ms total) [----------] Global test environment tear-down [==========] 15 tests from 2 test suites ran. (68141 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=cmake dh_prep -O--buildsystem=cmake dh_auto_install --destdir=debian/racon/ -O--buildsystem=cmake cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/racon-1.5.0/debian/racon AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/racon-1.5.0 -B/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/racon-1.5.0/debian/racon/usr/bin/racon make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' dh_install -O--buildsystem=cmake dh_installdocs -O--buildsystem=cmake dh_installchangelogs -O--buildsystem=cmake dh_installexamples -O--buildsystem=cmake dh_installman -O--buildsystem=cmake dh_installsystemduser -O--buildsystem=cmake dh_lintian -O--buildsystem=cmake dh_perl -O--buildsystem=cmake dh_link -O--buildsystem=cmake dh_strip_nondeterminism -O--buildsystem=cmake dh_compress -O--buildsystem=cmake dh_fixperms -O--buildsystem=cmake dh_missing -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=cmake dh_gencontrol -O--buildsystem=cmake dh_md5sums -O--buildsystem=cmake dh_builddeb -O--buildsystem=cmake dpkg-deb: building package 'racon' in '../racon_1.5.0-3_arm64.deb'. dpkg-deb: building package 'racon-dbgsym' in '../racon-dbgsym_1.5.0-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../racon_1.5.0-3_arm64.buildinfo dpkg-genchanges --build=binary -O../racon_1.5.0-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1445502 and its subdirectories I: Current time: Sat Mar 28 04:11:44 +14 2026 I: pbuilder-time-stamp: 1774620704 + false + set +x Fri Mar 27 14:11:44 UTC 2026 I: Signing ./b2/racon_1.5.0-3_arm64.buildinfo as racon_1.5.0-3_arm64.buildinfo.asc Fri Mar 27 14:11:44 UTC 2026 I: Signed ./b2/racon_1.5.0-3_arm64.buildinfo as ./b2/racon_1.5.0-3_arm64.buildinfo.asc Fri Mar 27 14:11:44 UTC 2026 - build #2 for racon/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 14:11:44 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-q7l9lMYg, removing. /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0: total 104 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:46 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 22 07:48 b2 -rw-r--r-- 1 jenkins jenkins 2106 Sep 29 2022 racon_1.5.0-3.dsc -rw------- 1 jenkins jenkins 87425 Feb 22 07:46 rbuildlog.29cNwEp /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1: total 4184 -rw-r--r-- 1 jenkins jenkins 83921 Feb 22 07:46 build.log -rw-r--r-- 1 jenkins jenkins 1017984 Feb 22 07:46 racon-dbgsym_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 20652 Feb 22 07:46 racon_1.5.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2106 Feb 22 07:46 racon_1.5.0-3.dsc -rw-r--r-- 1 jenkins jenkins 6222 Feb 22 07:46 racon_1.5.0-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7104 Feb 22 07:46 racon_1.5.0-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Feb 22 07:46 racon_1.5.0-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 3111016 Feb 22 07:46 racon_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1228 Feb 22 07:46 racon_1.5.0-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2: total 4172 -rw-r--r-- 1 jenkins jenkins 85870 Feb 22 07:48 build.log -rw-r--r-- 1 jenkins jenkins 1017984 Feb 22 07:48 racon-dbgsym_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 20652 Feb 22 07:48 racon_1.5.0-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2106 Feb 22 07:48 racon_1.5.0-3.dsc -rw-r--r-- 1 jenkins jenkins 6222 Feb 22 07:48 racon_1.5.0-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7104 Feb 22 07:48 racon_1.5.0-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1387 Feb 22 07:48 racon_1.5.0-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 3111016 Feb 22 07:48 racon_1.5.0-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1228 Feb 22 07:48 racon_1.5.0-3_source.changes Sat Feb 22 07:48:45 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sat Feb 22 07:48:46 UTC 2025 I: racon_1.5.0-3_arm64.changes: Format: 1.8 Date: Thu, 29 Sep 2022 14:39:55 +0200 Source: racon Binary: racon racon-dbgsym Architecture: arm64 Version: 1.5.0-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: racon - consensus module for raw de novo DNA assembly of long uncorrected Changes: racon (1.5.0-3) unstable; urgency=medium . * Standards-Version: 4.6.1 (routine-update) * Drop patch making racon compatible to old libthread_pool Checksums-Sha1: e0b8593a9f5b9646043404d4b0911405ee25a980 1017984 racon-dbgsym_1.5.0-3_arm64.deb 8283040cc983540cf4e7943fd3d87ba6e464b280 6222 racon_1.5.0-3_arm64.buildinfo 7767c617a8c71884ffef94e71bdda4036d1c1f5d 3111016 racon_1.5.0-3_arm64.deb Checksums-Sha256: 178360f5e8a0d647907f7e83d3c74fed09539891a421ac060cd6649246551f39 1017984 racon-dbgsym_1.5.0-3_arm64.deb 65fd931c3070446a5b4ed65c013cd7f09d0ac07313e55c816d0c127440f3e0c8 6222 racon_1.5.0-3_arm64.buildinfo 9a286634235d490cc8c0af83a578553a9d9f2f57b95c5063d49905d20ea509d9 3111016 racon_1.5.0-3_arm64.deb Files: 884f61d7c3d81b06da8dee289c0332cc 1017984 debug optional racon-dbgsym_1.5.0-3_arm64.deb 332a7766bab82a00c3886e5c7de97e63 6222 science optional racon_1.5.0-3_arm64.buildinfo c1cb7c616be46806aa808b5b421b69db 3111016 science optional racon_1.5.0-3_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/racon_1.5.0-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/racon_1.5.0-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/racon_1.5.0-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/racon_1.5.0-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/racon_1.5.0-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/racon_1.5.0-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-22 07:46:49.382873461 +0000 +++ b2/build.log 2025-02-22 07:48:45.373630335 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Feb 21 19:44:59 -12 2025 -I: pbuilder-time-stamp: 1740210299 +I: Current time: Sat Mar 28 04:09:52 +14 2026 +I: pbuilder-time-stamp: 1774620592 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: applying py3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Mar 27 14:09 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ea6eaba0a4d248028af87dd849c9037e' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='718479' - PS1='# ' - PS2='> ' + INVOCATION_ID=4b95aa564b124b27984fae26d54ad50f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1445502 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_i85u --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1 --logfile b1/build.log racon_1.5.0-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/pbuilderrc_9KAR --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2 --logfile b2/build.log racon_1.5.0-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/718479/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 71 http://deb.debian.org/debian unstable/main arm64 libspoa-dev arm64 4.1.4-2+b1 [9788 B] Get: 72 http://deb.debian.org/debian unstable/main arm64 libthread-pool-dev arm64 4.0.0-2 [7304 B] Get: 73 http://deb.debian.org/debian unstable/main arm64 rampler arm64 2.1.1-1+b1 [21.2 kB] -Fetched 40.1 MB in 0s (141 MB/s) +Fetched 40.1 MB in 0s (114 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19889 files and directories currently installed.) @@ -503,7 +535,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/racon-1.5.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../racon_1.5.0-3_source.changes dpkg-buildpackage: info: source package racon dpkg-buildpackage: info: source version 1.5.0-3 dpkg-buildpackage: info: source distribution unstable @@ -529,7 +565,7 @@ -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done --- Configuring done (0.9s) +-- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -556,16 +592,16 @@ make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon.dir/build.make CMakeFiles/racon.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 10%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o -[ 30%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o -[ 50%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o -[ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp -/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp +[ 10%] Building CXX object CMakeFiles/racon.dir/src/overlap.cpp.o +[ 20%] Building CXX object CMakeFiles/racon.dir/src/logger.cpp.o +[ 30%] Building CXX object CMakeFiles/racon.dir/src/polisher.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/polisher.cpp.o -MF CMakeFiles/racon.dir/src/polisher.cpp.o.d -o CMakeFiles/racon.dir/src/polisher.cpp.o -c /build/reproducible-path/racon-1.5.0/src/polisher.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/logger.cpp.o -MF CMakeFiles/racon.dir/src/logger.cpp.o.d -o CMakeFiles/racon.dir/src/logger.cpp.o -c /build/reproducible-path/racon-1.5.0/src/logger.cpp /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/overlap.cpp.o -MF CMakeFiles/racon.dir/src/overlap.cpp.o.d -o CMakeFiles/racon.dir/src/overlap.cpp.o -c /build/reproducible-path/racon-1.5.0/src/overlap.cpp +[ 40%] Building CXX object CMakeFiles/racon.dir/src/window.cpp.o +[ 50%] Building CXX object CMakeFiles/racon.dir/src/sequence.cpp.o /usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/window.cpp.o -MF CMakeFiles/racon.dir/src/window.cpp.o.d -o CMakeFiles/racon.dir/src/window.cpp.o -c /build/reproducible-path/racon-1.5.0/src/window.cpp +/usr/bin/c++ -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -pthread -MD -MT CMakeFiles/racon.dir/src/sequence.cpp.o -MF CMakeFiles/racon.dir/src/sequence.cpp.o.d -o CMakeFiles/racon.dir/src/sequence.cpp.o -c /build/reproducible-path/racon-1.5.0/src/sequence.cpp [ 60%] Linking CXX static library lib/libracon.a /usr/bin/cmake -P CMakeFiles/racon.dir/cmake_clean_target.cmake /usr/bin/cmake -E cmake_link_script CMakeFiles/racon.dir/link.txt --verbose=1 @@ -581,14 +617,14 @@ cd /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0 /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu /build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu/CMakeFiles/racon_test.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_test.dir/build.make CMakeFiles/racon_test.dir/build +make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' make -f CMakeFiles/racon_exe.dir/build.make CMakeFiles/racon_exe.dir/build make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/racon-1.5.0/obj-aarch64-linux-gnu' -[ 70%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o -[ 80%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o -/usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp +[ 70%] Building CXX object CMakeFiles/racon_exe.dir/src/main.cpp.o /usr/bin/c++ -DVERSION=\"1.5.0\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++11 -MD -MT CMakeFiles/racon_exe.dir/src/main.cpp.o -MF CMakeFiles/racon_exe.dir/src/main.cpp.o.d -o CMakeFiles/racon_exe.dir/src/main.cpp.o -c /build/reproducible-path/racon-1.5.0/src/main.cpp +[ 80%] Building CXX object CMakeFiles/racon_test.dir/test/racon_test.cpp.o +/usr/bin/c++ -DTEST_DATA=\"/build/reproducible-path/racon-1.5.0/test/data/\" -I/build/reproducible-path/racon-1.5.0/src -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -std=c++14 -DGTEST_HAS_PTHREAD=1 -MD -MT CMakeFiles/racon_test.dir/test/racon_test.cpp.o -MF CMakeFiles/racon_test.dir/test/racon_test.cpp.o.d -o CMakeFiles/racon_test.dir/test/racon_test.cpp.o -c /build/reproducible-path/racon-1.5.0/test/racon_test.cpp [ 90%] Linking CXX executable bin/racon /usr/bin/cmake -E cmake_link_script CMakeFiles/racon_exe.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/racon-1.5.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -Wextra -pedantic -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/racon_exe.dir/link.d CMakeFiles/racon_exe.dir/src/main.cpp.o -o bin/racon lib/libracon.a -ledlib -lspoa -lpthread -lz @@ -614,108 +650,108 @@ [ RUN ] RaconInitializeTest.WindowLengthError [ OK ] RaconInitializeTest.WindowLengthError (1 ms) [ RUN ] RaconInitializeTest.SequencesPathExtensionError -[ OK ] RaconInitializeTest.SequencesPathExtensionError (1 ms) +[ OK ] RaconInitializeTest.SequencesPathExtensionError (2 ms) [ RUN ] RaconInitializeTest.OverlapsPathExtensionError -[ OK ] RaconInitializeTest.OverlapsPathExtensionError (3 ms) +[ OK ] RaconInitializeTest.OverlapsPathExtensionError (4 ms) [ RUN ] RaconInitializeTest.TargetPathExtensionError [ OK ] RaconInitializeTest.TargetPathExtensionError (4 ms) -[----------] 5 tests from RaconInitializeTest (12 ms total) +[----------] 5 tests from RaconInitializeTest (14 ms total) [----------] 10 tests from RaconPolishingTest [ RUN ] RaconPolishingTest.ConsensusWithQualities -[racon::Polisher::initialize] loaded target sequences 0.000791 s -[racon::Polisher::initialize] loaded sequences 0.046262 s -[racon::Polisher::initialize] loaded overlaps 0.000287 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.060479 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.073832 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.084330 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.095629 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.103289 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.109152 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131272 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.141718 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.149863 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157040 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167057 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176585 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.185139 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.191075 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.204176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.223488 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.229463 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.235035 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240328 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247800 s -[racon::Polisher::initialize] transformed data into windows 0.003932 s -[racon::Polisher::polish] generating consensus [=> ] 0.045717 s [racon::Polisher::polish] generating consensus [==> ] 0.075384 s [racon::Polisher::polish] generating consensus [===> ] 0.100447 s [racon::Polisher::polish] generating consensus [====> ] 0.114890 s [racon::Polisher::polish] generating consensus [=====> ] 0.127197 s [racon::Polisher::polish] generating consensus [======> ] 0.137768 s [racon::Polisher::polish] generating consensus [=======> ] 0.147735 s [racon::Polisher::polish] generating consensus [========> ] 0.159436 s [racon::Polisher::polish] generating consensus [=========> ] 0.174616 s [racon::Polisher::polish] generating consensus [==========> ] 0.191343 s [racon::Polisher::polish] generating consensus [===========> ] 0.219886 s [racon::Polisher::polish] generating consensus [============> ] 0.255659 s [racon::Polisher::polish] generating consensus [=============> ] 0.303597 s [racon::Polisher::polish] generating consensus [==============> ] 0.350419 s [racon::Polisher::polish] generating consensus [===============> ] 0.383766 s [racon::Polisher::polish] generating consensus [================> ] 0.407768 s [racon::Polisher::polish] generating consensus [=================> ] 0.438421 s [racon::Polisher::polish] generating consensus [==================> ] 0.456098 s [racon::Polisher::polish] generating consensus [===================>] 0.480001 s [racon::Polisher::polish] generating consensus [====================] 0.557544 s -[racon::Polisher::] total = 0.883083 s -[ OK ] RaconPolishingTest.ConsensusWithQualities (892 ms) +[racon::Polisher::initialize] loaded target sequences 0.001072 s +[racon::Polisher::initialize] loaded sequences 0.063562 s +[racon::Polisher::initialize] loaded overlaps 0.000352 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.049688 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.068818 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.082172 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.096372 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.105081 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.110559 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.131936 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.144567 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.150017 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.157695 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167722 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.181759 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.186032 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.196368 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.209509 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.229425 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235932 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.243165 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.249252 s [racon::Polisher::initialize] aligning overlaps [====================] 0.256275 s +[racon::Polisher::initialize] transformed data into windows 0.003850 s +[racon::Polisher::polish] generating consensus [=> ] 0.024923 s [racon::Polisher::polish] generating consensus [==> ] 0.067180 s [racon::Polisher::polish] generating consensus [===> ] 0.087905 s [racon::Polisher::polish] generating consensus [====> ] 0.102051 s [racon::Polisher::polish] generating consensus [=====> ] 0.110018 s [racon::Polisher::polish] generating consensus [======> ] 0.118909 s [racon::Polisher::polish] generating consensus [=======> ] 0.127862 s [racon::Polisher::polish] generating consensus [========> ] 0.141922 s [racon::Polisher::polish] generating consensus [=========> ] 0.158174 s [racon::Polisher::polish] generating consensus [==========> ] 0.177999 s [racon::Polisher::polish] generating consensus [===========> ] 0.206442 s [racon::Polisher::polish] generating consensus [============> ] 0.229367 s [racon::Polisher::polish] generating consensus [=============> ] 0.274246 s [racon::Polisher::polish] generating consensus [==============> ] 0.322530 s [racon::Polisher::polish] generating consensus [===============> ] 0.356748 s [racon::Polisher::polish] generating consensus [================> ] 0.381262 s [racon::Polisher::polish] generating consensus [=================> ] 0.412776 s [racon::Polisher::polish] generating consensus [==================> ] 0.430909 s [racon::Polisher::polish] generating consensus [===================>] 0.455335 s [racon::Polisher::polish] generating consensus [====================] 0.550038 s +[racon::Polisher::] total = 0.902578 s +[ OK ] RaconPolishingTest.ConsensusWithQualities (916 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualities -[racon::Polisher::initialize] loaded target sequences 0.000893 s -[racon::Polisher::initialize] loaded sequences 0.026524 s -[racon::Polisher::initialize] loaded overlaps 0.000392 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.041088 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060438 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.078859 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089895 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.102585 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.112877 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.135021 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.145006 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.153158 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.160289 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.170231 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.178818 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188182 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.192871 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199235 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.204523 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.209056 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.221121 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.234952 s [racon::Polisher::initialize] aligning overlaps [====================] 0.243686 s -[racon::Polisher::initialize] transformed data into windows 0.000626 s -[racon::Polisher::polish] generating consensus [=> ] 0.026950 s [racon::Polisher::polish] generating consensus [==> ] 0.057368 s [racon::Polisher::polish] generating consensus [===> ] 0.081280 s [racon::Polisher::polish] generating consensus [====> ] 0.100669 s [racon::Polisher::polish] generating consensus [=====> ] 0.115124 s [racon::Polisher::polish] generating consensus [======> ] 0.128685 s [racon::Polisher::polish] generating consensus [=======> ] 0.145532 s [racon::Polisher::polish] generating consensus [========> ] 0.159916 s [racon::Polisher::polish] generating consensus [=========> ] 0.177078 s [racon::Polisher::polish] generating consensus [==========> ] 0.205912 s [racon::Polisher::polish] generating consensus [===========> ] 0.240562 s [racon::Polisher::polish] generating consensus [============> ] 0.282587 s [racon::Polisher::polish] generating consensus [=============> ] 0.343494 s [racon::Polisher::polish] generating consensus [==============> ] 0.389080 s [racon::Polisher::polish] generating consensus [===============> ] 0.433744 s [racon::Polisher::polish] generating consensus [================> ] 0.477599 s [racon::Polisher::polish] generating consensus [=================> ] 0.520298 s [racon::Polisher::polish] generating consensus [==================> ] 0.545129 s [racon::Polisher::polish] generating consensus [===================>] 0.573858 s [racon::Polisher::polish] generating consensus [====================] 0.739476 s -[racon::Polisher::] total = 1.020402 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1031 ms) +[racon::Polisher::initialize] loaded target sequences 0.000991 s +[racon::Polisher::initialize] loaded sequences 0.029070 s +[racon::Polisher::initialize] loaded overlaps 0.000391 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.041894 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.060499 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075164 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089004 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097433 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.103031 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.114572 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.136027 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139843 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147671 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154349 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169455 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.173776 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183941 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.195577 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214872 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219620 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.223552 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.230332 s [racon::Polisher::initialize] aligning overlaps [====================] 0.237203 s +[racon::Polisher::initialize] transformed data into windows 0.000638 s +[racon::Polisher::polish] generating consensus [=> ] 0.027084 s [racon::Polisher::polish] generating consensus [==> ] 0.058248 s [racon::Polisher::polish] generating consensus [===> ] 0.081053 s [racon::Polisher::polish] generating consensus [====> ] 0.100161 s [racon::Polisher::polish] generating consensus [=====> ] 0.114596 s [racon::Polisher::polish] generating consensus [======> ] 0.128168 s [racon::Polisher::polish] generating consensus [=======> ] 0.144975 s [racon::Polisher::polish] generating consensus [========> ] 0.159359 s [racon::Polisher::polish] generating consensus [=========> ] 0.176460 s [racon::Polisher::polish] generating consensus [==========> ] 0.209737 s [racon::Polisher::polish] generating consensus [===========> ] 0.244817 s [racon::Polisher::polish] generating consensus [============> ] 0.288270 s [racon::Polisher::polish] generating consensus [=============> ] 0.350735 s [racon::Polisher::polish] generating consensus [==============> ] 0.395148 s [racon::Polisher::polish] generating consensus [===============> ] 0.441606 s [racon::Polisher::polish] generating consensus [================> ] 0.477648 s [racon::Polisher::polish] generating consensus [=================> ] 0.519281 s [racon::Polisher::polish] generating consensus [==================> ] 0.544535 s [racon::Polisher::polish] generating consensus [===================>] 0.573263 s [racon::Polisher::polish] generating consensus [====================] 0.742427 s +[racon::Polisher::] total = 1.019546 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualities (1028 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments -[racon::Polisher::initialize] loaded target sequences 0.000364 s -[racon::Polisher::initialize] loaded sequences 0.026442 s -[racon::Polisher::initialize] loaded overlaps 0.015661 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.005136 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005336 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005596 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.005947 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006119 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006321 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006605 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007086 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007214 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007395 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007660 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008138 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008306 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008627 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008749 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008937 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008941 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008947 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009036 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009121 s -[racon::Polisher::initialize] transformed data into windows 0.001393 s -[racon::Polisher::polish] generating consensus [=> ] 0.056754 s [racon::Polisher::polish] generating consensus [==> ] 0.091025 s [racon::Polisher::polish] generating consensus [===> ] 0.119195 s [racon::Polisher::polish] generating consensus [====> ] 0.136169 s [racon::Polisher::polish] generating consensus [=====> ] 0.145958 s [racon::Polisher::polish] generating consensus [======> ] 0.156117 s [racon::Polisher::polish] generating consensus [=======> ] 0.166340 s [racon::Polisher::polish] generating consensus [========> ] 0.178094 s [racon::Polisher::polish] generating consensus [=========> ] 0.191489 s [racon::Polisher::polish] generating consensus [==========> ] 0.209909 s [racon::Polisher::polish] generating consensus [===========> ] 0.235358 s [racon::Polisher::polish] generating consensus [============> ] 0.269894 s [racon::Polisher::polish] generating consensus [=============> ] 0.316051 s [racon::Polisher::polish] generating consensus [==============> ] 0.363253 s [racon::Polisher::polish] generating consensus [===============> ] 0.404499 s [racon::Polisher::polish] generating consensus [================> ] 0.429487 s [racon::Polisher::polish] generating consensus [=================> ] 0.463146 s [racon::Polisher::polish] generating consensus [==================> ] 0.503539 s [racon::Polisher::polish] generating consensus [===================>] 0.522655 s [racon::Polisher::polish] generating consensus [====================] 0.570208 s -[racon::Polisher::] total = 0.649323 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (654 ms) +[racon::Polisher::initialize] loaded target sequences 0.000361 s +[racon::Polisher::initialize] loaded sequences 0.026149 s +[racon::Polisher::initialize] loaded overlaps 0.015588 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.005282 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005535 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.005815 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.006135 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006280 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006465 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006740 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.007226 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.007376 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.007560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.007824 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008141 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008163 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008288 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008477 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008819 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008926 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.009087 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009165 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009198 s +[racon::Polisher::initialize] transformed data into windows 0.001400 s +[racon::Polisher::polish] generating consensus [=> ] 0.057767 s [racon::Polisher::polish] generating consensus [==> ] 0.093456 s [racon::Polisher::polish] generating consensus [===> ] 0.122056 s [racon::Polisher::polish] generating consensus [====> ] 0.136850 s [racon::Polisher::polish] generating consensus [=====> ] 0.148418 s [racon::Polisher::polish] generating consensus [======> ] 0.158507 s [racon::Polisher::polish] generating consensus [=======> ] 0.168643 s [racon::Polisher::polish] generating consensus [========> ] 0.180335 s [racon::Polisher::polish] generating consensus [=========> ] 0.193655 s [racon::Polisher::polish] generating consensus [==========> ] 0.209706 s [racon::Polisher::polish] generating consensus [===========> ] 0.236370 s [racon::Polisher::polish] generating consensus [============> ] 0.271100 s [racon::Polisher::polish] generating consensus [=============> ] 0.316936 s [racon::Polisher::polish] generating consensus [==============> ] 0.363281 s [racon::Polisher::polish] generating consensus [===============> ] 0.395592 s [racon::Polisher::polish] generating consensus [================> ] 0.419545 s [racon::Polisher::polish] generating consensus [=================> ] 0.452486 s [racon::Polisher::polish] generating consensus [==================> ] 0.471323 s [racon::Polisher::polish] generating consensus [===================>] 0.487942 s [racon::Polisher::polish] generating consensus [====================] 0.572327 s +[racon::Polisher::] total = 0.651325 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesAndAlignments (656 ms) [ RUN ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments -[racon::Polisher::initialize] loaded target sequences 0.000756 s -[racon::Polisher::initialize] loaded sequences 0.024615 s -[racon::Polisher::initialize] loaded overlaps 0.026898 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.003235 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.003464 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.003755 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.003989 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.004162 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.004346 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.004707 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.005106 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.005256 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.005438 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.005702 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.006014 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.006022 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.006138 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.006176 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.006184 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.006190 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.006223 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.006371 s [racon::Polisher::initialize] aligning overlaps [====================] 0.006378 s -[racon::Polisher::initialize] transformed data into windows 0.000447 s -[racon::Polisher::polish] generating consensus [=> ] 0.060231 s [racon::Polisher::polish] generating consensus [==> ] 0.101675 s [racon::Polisher::polish] generating consensus [===> ] 0.132404 s [racon::Polisher::polish] generating consensus [====> ] 0.150696 s [racon::Polisher::polish] generating consensus [=====> ] 0.163872 s [racon::Polisher::polish] generating consensus [======> ] 0.176439 s [racon::Polisher::polish] generating consensus [=======> ] 0.189785 s [racon::Polisher::polish] generating consensus [========> ] 0.206100 s [racon::Polisher::polish] generating consensus [=========> ] 0.222434 s [racon::Polisher::polish] generating consensus [==========> ] 0.247208 s [racon::Polisher::polish] generating consensus [===========> ] 0.278408 s [racon::Polisher::polish] generating consensus [============> ] 0.318029 s [racon::Polisher::polish] generating consensus [=============> ] 0.367735 s [racon::Polisher::polish] generating consensus [==============> ] 0.419010 s [racon::Polisher::polish] generating consensus [===============> ] 0.459028 s [racon::Polisher::polish] generating consensus [================> ] 0.499995 s [racon::Polisher::polish] generating consensus [=================> ] 0.542554 s [racon::Polisher::polish] generating consensus [==================> ] 0.564019 s [racon::Polisher::polish] generating consensus [===================>] 0.588650 s [racon::Polisher::polish] generating consensus [====================] 0.719401 s -[racon::Polisher::] total = 0.795738 s -[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (797 ms) +[racon::Polisher::initialize] loaded target sequences 0.000951 s +[racon::Polisher::initialize] loaded sequences 0.031551 s +[racon::Polisher::initialize] loaded overlaps 0.031543 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.004865 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.005618 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.006470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.006842 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.006862 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.006875 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.006886 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.006898 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.006909 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.006920 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.006932 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.008177 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.008193 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.008203 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.008215 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.008610 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.008737 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.008818 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.009023 s [racon::Polisher::initialize] aligning overlaps [====================] 0.009035 s +[racon::Polisher::initialize] transformed data into windows 0.000669 s +[racon::Polisher::polish] generating consensus [=> ] 0.065975 s [racon::Polisher::polish] generating consensus [==> ] 0.105936 s [racon::Polisher::polish] generating consensus [===> ] 0.132072 s [racon::Polisher::polish] generating consensus [====> ] 0.153498 s [racon::Polisher::polish] generating consensus [=====> ] 0.166129 s [racon::Polisher::polish] generating consensus [======> ] 0.175760 s [racon::Polisher::polish] generating consensus [=======> ] 0.189941 s [racon::Polisher::polish] generating consensus [========> ] 0.204452 s [racon::Polisher::polish] generating consensus [=========> ] 0.221748 s [racon::Polisher::polish] generating consensus [==========> ] 0.246810 s [racon::Polisher::polish] generating consensus [===========> ] 0.278126 s [racon::Polisher::polish] generating consensus [============> ] 0.316555 s [racon::Polisher::polish] generating consensus [=============> ] 0.376761 s [racon::Polisher::polish] generating consensus [==============> ] 0.422035 s [racon::Polisher::polish] generating consensus [===============> ] 0.462226 s [racon::Polisher::polish] generating consensus [================> ] 0.500190 s [racon::Polisher::polish] generating consensus [=================> ] 0.539269 s [racon::Polisher::polish] generating consensus [==================> ] 0.562973 s [racon::Polisher::polish] generating consensus [===================>] 0.587247 s [racon::Polisher::polish] generating consensus [====================] 0.729980 s +[racon::Polisher::] total = 0.810317 s +[ OK ] RaconPolishingTest.ConsensusWithoutQualitiesAndWithAlignments (812 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow -[racon::Polisher::initialize] loaded target sequences 0.000971 s -[racon::Polisher::initialize] loaded sequences 0.052791 s -[racon::Polisher::initialize] loaded overlaps 0.000302 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.042002 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057804 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.069804 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.083473 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.091296 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.096727 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.113946 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.126104 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.136323 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148017 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.154480 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.167779 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.183909 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.186775 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.201396 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.207637 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219082 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.229118 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.233144 s [racon::Polisher::initialize] aligning overlaps [====================] 0.240492 s -[racon::Polisher::initialize] transformed data into windows 0.001302 s -[racon::Polisher::polish] generating consensus [=> ] 0.091651 s [racon::Polisher::polish] generating consensus [==> ] 0.096599 s [racon::Polisher::polish] generating consensus [===> ] 0.172270 s [racon::Polisher::polish] generating consensus [====> ] 0.172638 s [racon::Polisher::polish] generating consensus [=====> ] 0.212643 s [racon::Polisher::polish] generating consensus [======> ] 0.212673 s [racon::Polisher::polish] generating consensus [=======> ] 0.246186 s [racon::Polisher::polish] generating consensus [========> ] 0.246232 s [racon::Polisher::polish] generating consensus [=========> ] 0.303999 s [racon::Polisher::polish] generating consensus [==========> ] 0.319187 s [racon::Polisher::polish] generating consensus [===========> ] 0.407179 s [racon::Polisher::polish] generating consensus [============> ] 0.439006 s [racon::Polisher::polish] generating consensus [=============> ] 0.588171 s [racon::Polisher::polish] generating consensus [==============> ] 0.611382 s [racon::Polisher::polish] generating consensus [===============> ] 0.702385 s [racon::Polisher::polish] generating consensus [================> ] 0.714545 s [racon::Polisher::polish] generating consensus [=================> ] 0.803576 s [racon::Polisher::polish] generating consensus [==================> ] 0.803611 s [racon::Polisher::polish] generating consensus [===================>] 0.887524 s [racon::Polisher::polish] generating consensus [====================] 1.065365 s -[racon::Polisher::] total = 1.385889 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1406 ms) +[racon::Polisher::initialize] loaded target sequences 0.000385 s +[racon::Polisher::initialize] loaded sequences 0.027214 s +[racon::Polisher::initialize] loaded overlaps 0.000225 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.024598 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.035172 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.045946 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.054559 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.064112 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.072904 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.093027 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.102962 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.111085 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.118222 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.128158 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.136714 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.146083 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.150777 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.157198 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.169660 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.174432 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.183865 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.192645 s [racon::Polisher::initialize] aligning overlaps [====================] 0.206574 s +[racon::Polisher::initialize] transformed data into windows 0.003562 s +[racon::Polisher::polish] generating consensus [=> ] 0.091708 s [racon::Polisher::polish] generating consensus [==> ] 0.091894 s [racon::Polisher::polish] generating consensus [===> ] 0.172327 s [racon::Polisher::polish] generating consensus [====> ] 0.172379 s [racon::Polisher::polish] generating consensus [=====> ] 0.212928 s [racon::Polisher::polish] generating consensus [======> ] 0.212951 s [racon::Polisher::polish] generating consensus [=======> ] 0.246965 s [racon::Polisher::polish] generating consensus [========> ] 0.247004 s [racon::Polisher::polish] generating consensus [=========> ] 0.304453 s [racon::Polisher::polish] generating consensus [==========> ] 0.306371 s [racon::Polisher::polish] generating consensus [===========> ] 0.409139 s [racon::Polisher::polish] generating consensus [============> ] 0.425748 s [racon::Polisher::polish] generating consensus [=============> ] 0.590017 s [racon::Polisher::polish] generating consensus [==============> ] 0.596795 s [racon::Polisher::polish] generating consensus [===============> ] 0.703518 s [racon::Polisher::polish] generating consensus [================> ] 0.703565 s [racon::Polisher::polish] generating consensus [=================> ] 0.804865 s [racon::Polisher::polish] generating consensus [==================> ] 0.804914 s [racon::Polisher::polish] generating consensus [===================>] 0.890555 s [racon::Polisher::polish] generating consensus [====================] 1.076649 s +[racon::Polisher::] total = 1.339455 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesLargerWindow (1349 ms) [ RUN ] RaconPolishingTest.ConsensusWithQualitiesEditDistance -[racon::Polisher::initialize] loaded target sequences 0.000974 s -[racon::Polisher::initialize] loaded sequences 0.057574 s -[racon::Polisher::initialize] loaded overlaps 0.000322 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.043961 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.062298 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.075470 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.088999 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.097979 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102871 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.121719 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.135836 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139772 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.147231 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.157089 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.169116 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.175588 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.183882 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.194935 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.214534 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.219294 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.226961 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.235017 s [racon::Polisher::initialize] aligning overlaps [====================] 0.242914 s -[racon::Polisher::initialize] transformed data into windows 0.001630 s -[racon::Polisher::polish] generating consensus [=> ] 0.023711 s [racon::Polisher::polish] generating consensus [==> ] 0.045684 s [racon::Polisher::polish] generating consensus [===> ] 0.063741 s [racon::Polisher::polish] generating consensus [====> ] 0.094175 s [racon::Polisher::polish] generating consensus [=====> ] 0.101293 s [racon::Polisher::polish] generating consensus [======> ] 0.112267 s [racon::Polisher::polish] generating consensus [=======> ] 0.122535 s [racon::Polisher::polish] generating consensus [========> ] 0.132583 s [racon::Polisher::polish] generating consensus [=========> ] 0.141723 s [racon::Polisher::polish] generating consensus [==========> ] 0.165575 s [racon::Polisher::polish] generating consensus [===========> ] 0.188876 s [racon::Polisher::polish] generating consensus [============> ] 0.222616 s [racon::Polisher::polish] generating consensus [=============> ] 0.263754 s [racon::Polisher::polish] generating consensus [==============> ] 0.305643 s [racon::Polisher::polish] generating consensus [===============> ] 0.341705 s [racon::Polisher::polish] generating consensus [================> ] 0.365316 s [racon::Polisher::polish] generating consensus [=================> ] 0.396710 s [racon::Polisher::polish] generating consensus [==================> ] 0.415443 s [racon::Polisher::polish] generating consensus [===================>] 0.434070 s [racon::Polisher::polish] generating consensus [====================] 0.516301 s -[racon::Polisher::] total = 0.844289 s -[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (846 ms) +[racon::Polisher::initialize] loaded target sequences 0.000977 s +[racon::Polisher::initialize] loaded sequences 0.062530 s +[racon::Polisher::initialize] loaded overlaps 0.000337 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.043351 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.063031 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.077889 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.094363 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.104158 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.106722 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.124901 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.139955 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.143788 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.151692 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159973 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.173467 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.178618 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.187769 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.199277 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.218854 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.223599 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.231254 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.240423 s [racon::Polisher::initialize] aligning overlaps [====================] 0.247178 s +[racon::Polisher::initialize] transformed data into windows 0.003848 s +[racon::Polisher::polish] generating consensus [=> ] 0.023892 s [racon::Polisher::polish] generating consensus [==> ] 0.045796 s [racon::Polisher::polish] generating consensus [===> ] 0.063552 s [racon::Polisher::polish] generating consensus [====> ] 0.078058 s [racon::Polisher::polish] generating consensus [=====> ] 0.088259 s [racon::Polisher::polish] generating consensus [======> ] 0.098507 s [racon::Polisher::polish] generating consensus [=======> ] 0.107939 s [racon::Polisher::polish] generating consensus [========> ] 0.119616 s [racon::Polisher::polish] generating consensus [=========> ] 0.134455 s [racon::Polisher::polish] generating consensus [==========> ] 0.150034 s [racon::Polisher::polish] generating consensus [===========> ] 0.177234 s [racon::Polisher::polish] generating consensus [============> ] 0.211786 s [racon::Polisher::polish] generating consensus [=============> ] 0.256594 s [racon::Polisher::polish] generating consensus [==============> ] 0.301975 s [racon::Polisher::polish] generating consensus [===============> ] 0.334450 s [racon::Polisher::polish] generating consensus [================> ] 0.356530 s [racon::Polisher::polish] generating consensus [=================> ] 0.386052 s [racon::Polisher::polish] generating consensus [==================> ] 0.402952 s [racon::Polisher::polish] generating consensus [===================>] 0.428424 s [racon::Polisher::polish] generating consensus [====================] 0.518804 s +[racon::Polisher::] total = 0.857450 s +[ OK ] RaconPolishingTest.ConsensusWithQualitiesEditDistance (859 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualities -[racon::Polisher::initialize] loaded target sequences 0.060722 s -[racon::Polisher::initialize] loaded sequences 0.035801 s -[racon::Polisher::initialize] loaded overlaps 0.008053 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.042604 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.057074 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.071610 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.089232 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.099948 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.102742 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.117723 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.125767 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.138175 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.148449 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.159513 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.176603 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.188368 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202456 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.211331 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226119 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.235316 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.242742 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.246943 s [racon::Polisher::initialize] aligning overlaps [====================] 0.261708 s -[racon::Polisher::initialize] transformed data into windows 0.006764 s -[racon::Polisher::polish] generating consensus [=> ] 0.021947 s [racon::Polisher::polish] generating consensus [==> ] 0.043407 s [racon::Polisher::polish] generating consensus [===> ] 0.064685 s [racon::Polisher::polish] generating consensus [====> ] 0.064920 s [racon::Polisher::polish] generating consensus [=====> ] 0.080052 s [racon::Polisher::polish] generating consensus [======> ] 0.090056 s [racon::Polisher::polish] generating consensus [=======> ] 0.104541 s [racon::Polisher::polish] generating consensus [========> ] 0.107985 s [racon::Polisher::polish] generating consensus [=========> ] 0.135573 s [racon::Polisher::polish] generating consensus [==========> ] 0.147698 s [racon::Polisher::polish] generating consensus [===========> ] 0.158353 s [racon::Polisher::polish] generating consensus [============> ] 0.162285 s [racon::Polisher::polish] generating consensus [=============> ] 0.174523 s [racon::Polisher::polish] generating consensus [==============> ] 0.174842 s [racon::Polisher::polish] generating consensus [===============> ] 0.202885 s [racon::Polisher::polish] generating consensus [================> ] 0.203059 s [racon::Polisher::polish] generating consensus [=================> ] 0.254369 s [racon::Polisher::polish] generating consensus [==================> ] 0.272748 s [racon::Polisher::polish] generating consensus [===================>] 0.285411 s [racon::Polisher::polish] generating consensus [====================] 0.287409 s -[racon::Polisher::] total = 0.660924 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (662 ms) +[racon::Polisher::initialize] loaded target sequences 0.060287 s +[racon::Polisher::initialize] loaded sequences 0.034733 s +[racon::Polisher::initialize] loaded overlaps 0.008050 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.045693 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.072697 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.080391 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.092730 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.106121 s [racon::Polisher::initialize] aligning overlaps [======> ] 0.117656 s [racon::Polisher::initialize] aligning overlaps [=======> ] 0.123687 s [racon::Polisher::initialize] aligning overlaps [========> ] 0.130723 s [racon::Polisher::initialize] aligning overlaps [=========> ] 0.139864 s [racon::Polisher::initialize] aligning overlaps [==========> ] 0.154716 s [racon::Polisher::initialize] aligning overlaps [===========> ] 0.167306 s [racon::Polisher::initialize] aligning overlaps [============> ] 0.175903 s [racon::Polisher::initialize] aligning overlaps [=============> ] 0.187842 s [racon::Polisher::initialize] aligning overlaps [==============> ] 0.202785 s [racon::Polisher::initialize] aligning overlaps [===============> ] 0.212902 s [racon::Polisher::initialize] aligning overlaps [================> ] 0.226484 s [racon::Polisher::initialize] aligning overlaps [=================> ] 0.236650 s [racon::Polisher::initialize] aligning overlaps [==================> ] 0.254255 s [racon::Polisher::initialize] aligning overlaps [===================>] 0.262343 s [racon::Polisher::initialize] aligning overlaps [====================] 0.266885 s +[racon::Polisher::initialize] transformed data into windows 0.006756 s +[racon::Polisher::polish] generating consensus [=> ] 0.021270 s [racon::Polisher::polish] generating consensus [==> ] 0.043277 s [racon::Polisher::polish] generating consensus [===> ] 0.064807 s [racon::Polisher::polish] generating consensus [====> ] 0.065163 s [racon::Polisher::polish] generating consensus [=====> ] 0.078286 s [racon::Polisher::polish] generating consensus [======> ] 0.086811 s [racon::Polisher::polish] generating consensus [=======> ] 0.101060 s [racon::Polisher::polish] generating consensus [========> ] 0.104450 s [racon::Polisher::polish] generating consensus [=========> ] 0.131460 s [racon::Polisher::polish] generating consensus [==========> ] 0.143529 s [racon::Polisher::polish] generating consensus [===========> ] 0.153812 s [racon::Polisher::polish] generating consensus [============> ] 0.157863 s [racon::Polisher::polish] generating consensus [=============> ] 0.170797 s [racon::Polisher::polish] generating consensus [==============> ] 0.171245 s [racon::Polisher::polish] generating consensus [===============> ] 0.198847 s [racon::Polisher::polish] generating consensus [================> ] 0.199084 s [racon::Polisher::polish] generating consensus [=================> ] 0.249840 s [racon::Polisher::polish] generating consensus [==================> ] 0.268203 s [racon::Polisher::polish] generating consensus [===================>] 0.286214 s [racon::Polisher::polish] generating consensus [====================] 0.288353 s +[racon::Polisher::] total = 0.665565 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualities (667 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.026237 s -[racon::Polisher::initialize] loaded sequences 0.026146 s -[racon::Polisher::initialize] loaded overlaps 0.006938 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.297599 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.455676 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.600339 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.812442 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.001310 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.131576 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.307790 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.535242 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.743675 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.953140 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.113943 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.342298 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.573651 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.763636 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029707 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.271737 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484105 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.712026 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.967078 s [racon::Polisher::initialize] aligning overlaps [====================] 4.156447 s -[racon::Polisher::initialize] transformed data into windows 0.085425 s -[racon::Polisher::polish] generating consensus [=> ] 0.968043 s [racon::Polisher::polish] generating consensus [==> ] 1.648972 s [racon::Polisher::polish] generating consensus [===> ] 2.380784 s [racon::Polisher::polish] generating consensus [====> ] 2.983465 s [racon::Polisher::polish] generating consensus [=====> ] 3.637553 s [racon::Polisher::polish] generating consensus [======> ] 4.405981 s [racon::Polisher::polish] generating consensus [=======> ] 5.183578 s [racon::Polisher::polish] generating consensus [========> ] 5.747647 s [racon::Polisher::polish] generating consensus [=========> ] 6.489451 s [racon::Polisher::polish] generating consensus [==========> ] 7.349881 s [racon::Polisher::polish] generating consensus [===========> ] 8.058886 s [racon::Polisher::polish] generating consensus [============> ] 8.844954 s [racon::Polisher::polish] generating consensus [=============> ] 9.517978 s [racon::Polisher::polish] generating consensus [==============> ] 10.243179 s [racon::Polisher::polish] generating consensus [===============> ] 11.032924 s [racon::Polisher::polish] generating consensus [================> ] 11.464666 s [racon::Polisher::polish] generating consensus [=================> ] 12.343865 s [racon::Polisher::polish] generating consensus [==================> ] 13.165659 s [racon::Polisher::polish] generating consensus [===================>] 13.951403 s [racon::Polisher::polish] generating consensus [====================] 14.457003 s -[racon::Polisher::] total = 18.762415 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18763 ms) +[racon::Polisher::initialize] loaded target sequences 0.067168 s +[racon::Polisher::initialize] loaded sequences 0.038049 s +[racon::Polisher::initialize] loaded overlaps 0.008508 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.306332 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.464168 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.617857 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.830851 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.015469 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.144880 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.320158 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.545812 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.752968 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.961415 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.121142 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.348625 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.578805 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.767656 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.032638 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.273298 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.484402 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.714956 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.975719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.182910 s +[racon::Polisher::initialize] transformed data into windows 0.092450 s +[racon::Polisher::polish] generating consensus [=> ] 1.002056 s [racon::Polisher::polish] generating consensus [==> ] 1.673403 s [racon::Polisher::polish] generating consensus [===> ] 2.404453 s [racon::Polisher::polish] generating consensus [====> ] 3.007846 s [racon::Polisher::polish] generating consensus [=====> ] 3.660265 s [racon::Polisher::polish] generating consensus [======> ] 4.428097 s [racon::Polisher::polish] generating consensus [=======> ] 5.205942 s [racon::Polisher::polish] generating consensus [========> ] 5.768516 s [racon::Polisher::polish] generating consensus [=========> ] 6.493306 s [racon::Polisher::polish] generating consensus [==========> ] 7.347908 s [racon::Polisher::polish] generating consensus [===========> ] 8.056088 s [racon::Polisher::polish] generating consensus [============> ] 8.835230 s [racon::Polisher::polish] generating consensus [=============> ] 9.508975 s [racon::Polisher::polish] generating consensus [==============> ] 10.235483 s [racon::Polisher::polish] generating consensus [===============> ] 11.024156 s [racon::Polisher::polish] generating consensus [================> ] 11.456040 s [racon::Polisher::polish] generating consensus [=================> ] 12.327701 s [racon::Polisher::polish] generating consensus [==================> ] 13.142541 s [racon::Polisher::polish] generating consensus [===================>] 13.927392 s [racon::Polisher::polish] generating consensus [====================] 14.515029 s +[racon::Polisher::] total = 18.909165 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFull (18910 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull -[racon::Polisher::initialize] loaded target sequences 0.015531 s -[racon::Polisher::initialize] loaded sequences 0.013416 s -[racon::Polisher::initialize] loaded overlaps 0.007848 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.260923 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.430366 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.588310 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.801870 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.990732 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.117775 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.294546 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.521845 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.729655 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.941314 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.100458 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.329171 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.561103 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.751367 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.018052 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.260189 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.472132 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.699973 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.938719 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143906 s -[racon::Polisher::initialize] transformed data into windows 0.011485 s -[racon::Polisher::polish] generating consensus [=> ] 1.267138 s [racon::Polisher::polish] generating consensus [==> ] 2.251257 s [racon::Polisher::polish] generating consensus [===> ] 3.224598 s [racon::Polisher::polish] generating consensus [====> ] 3.963828 s [racon::Polisher::polish] generating consensus [=====> ] 4.852840 s [racon::Polisher::polish] generating consensus [======> ] 5.833324 s [racon::Polisher::polish] generating consensus [=======> ] 6.886296 s [racon::Polisher::polish] generating consensus [========> ] 7.647147 s [racon::Polisher::polish] generating consensus [=========> ] 8.651785 s [racon::Polisher::polish] generating consensus [==========> ] 9.820590 s [racon::Polisher::polish] generating consensus [===========> ] 10.781640 s [racon::Polisher::polish] generating consensus [============> ] 11.840948 s [racon::Polisher::polish] generating consensus [=============> ] 12.827738 s [racon::Polisher::polish] generating consensus [==============> ] 13.832092 s [racon::Polisher::polish] generating consensus [===============> ] 14.830374 s [racon::Polisher::polish] generating consensus [================> ] 15.372688 s [racon::Polisher::polish] generating consensus [=================> ] 16.693851 s [racon::Polisher::polish] generating consensus [==================> ] 17.856922 s [racon::Polisher::polish] generating consensus [===================>] 18.875561 s [racon::Polisher::polish] generating consensus [====================] 19.775223 s -[racon::Polisher::] total = 23.969221 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (23970 ms) +[racon::Polisher::initialize] loaded target sequences 0.031769 s +[racon::Polisher::initialize] loaded sequences 0.026737 s +[racon::Polisher::initialize] loaded overlaps 0.012146 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.256131 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.428556 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.585526 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.798745 s [racon::Polisher::initialize] aligning overlaps [=====> ] 0.983717 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.113463 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.289203 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.515276 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.722921 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.931857 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.092299 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.320625 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.551685 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.741369 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.007302 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.248687 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.460171 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.687179 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.925025 s [racon::Polisher::initialize] aligning overlaps [====================] 4.143587 s +[racon::Polisher::initialize] transformed data into windows 0.022265 s +[racon::Polisher::polish] generating consensus [=> ] 1.260905 s [racon::Polisher::polish] generating consensus [==> ] 2.246560 s [racon::Polisher::polish] generating consensus [===> ] 3.223575 s [racon::Polisher::polish] generating consensus [====> ] 3.968227 s [racon::Polisher::polish] generating consensus [=====> ] 4.860146 s [racon::Polisher::polish] generating consensus [======> ] 5.872154 s [racon::Polisher::polish] generating consensus [=======> ] 6.932877 s [racon::Polisher::polish] generating consensus [========> ] 7.879904 s [racon::Polisher::polish] generating consensus [=========> ] 8.817384 s [racon::Polisher::polish] generating consensus [==========> ] 9.943157 s [racon::Polisher::polish] generating consensus [===========> ] 10.889327 s [racon::Polisher::polish] generating consensus [============> ] 11.985046 s [racon::Polisher::polish] generating consensus [=============> ] 12.955909 s [racon::Polisher::polish] generating consensus [==============> ] 14.006538 s [racon::Polisher::polish] generating consensus [===============> ] 15.039473 s [racon::Polisher::polish] generating consensus [================> ] 15.623701 s [racon::Polisher::polish] generating consensus [=================> ] 16.900095 s [racon::Polisher::polish] generating consensus [==================> ] 18.079581 s [racon::Polisher::polish] generating consensus [===================>] 19.108571 s [racon::Polisher::polish] generating consensus [====================] 19.881678 s +[racon::Polisher::] total = 24.121744 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithoutQualitiesFull (24123 ms) [ RUN ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap -[racon::Polisher::initialize] loaded target sequences 0.067877 s -[racon::Polisher::initialize] loaded sequences 0.038218 s -[racon::Polisher::initialize] loaded overlaps 0.007465 s -[racon::Polisher::initialize] aligning overlaps [=> ] 0.294096 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.452436 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.606030 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.819137 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.003908 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.133578 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.308946 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.534467 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.741822 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.950560 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.110716 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.338437 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.569025 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.760533 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.023102 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.264084 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.474654 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709227 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.969885 s [racon::Polisher::initialize] aligning overlaps [====================] 4.171119 s -[racon::Polisher::initialize] transformed data into windows 0.111243 s -[racon::Polisher::polish] generating consensus [=> ] 0.979338 s [racon::Polisher::polish] generating consensus [==> ] 1.655764 s [racon::Polisher::polish] generating consensus [===> ] 2.373849 s [racon::Polisher::polish] generating consensus [====> ] 2.964068 s [racon::Polisher::polish] generating consensus [=====> ] 3.606440 s [racon::Polisher::polish] generating consensus [======> ] 4.361442 s [racon::Polisher::polish] generating consensus [=======> ] 5.124835 s [racon::Polisher::polish] generating consensus [========> ] 5.679185 s [racon::Polisher::polish] generating consensus [=========> ] 6.393159 s [racon::Polisher::polish] generating consensus [==========> ] 7.233715 s [racon::Polisher::polish] generating consensus [===========> ] 7.932189 s [racon::Polisher::polish] generating consensus [============> ] 8.697083 s [racon::Polisher::polish] generating consensus [=============> ] 9.362602 s [racon::Polisher::polish] generating consensus [==============> ] 10.076029 s [racon::Polisher::polish] generating consensus [===============> ] 10.853037 s [racon::Polisher::polish] generating consensus [================> ] 11.277530 s [racon::Polisher::polish] generating consensus [=================> ] 12.135240 s [racon::Polisher::polish] generating consensus [==================> ] 12.939017 s [racon::Polisher::polish] generating consensus [===================>] 13.710610 s [racon::Polisher::polish] generating consensus [====================] 14.313247 s -[racon::Polisher::] total = 18.718000 s -[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18719 ms) -[----------] 10 tests from RaconPolishingTest (67745 ms total) +[racon::Polisher::initialize] loaded target sequences 0.069648 s +[racon::Polisher::initialize] loaded sequences 0.040339 s +[racon::Polisher::initialize] loaded overlaps 0.007867 s +[racon::Polisher::initialize] aligning overlaps [=> ] 0.295849 s [racon::Polisher::initialize] aligning overlaps [==> ] 0.454386 s [racon::Polisher::initialize] aligning overlaps [===> ] 0.611141 s [racon::Polisher::initialize] aligning overlaps [====> ] 0.824167 s [racon::Polisher::initialize] aligning overlaps [=====> ] 1.009026 s [racon::Polisher::initialize] aligning overlaps [======> ] 1.139038 s [racon::Polisher::initialize] aligning overlaps [=======> ] 1.314095 s [racon::Polisher::initialize] aligning overlaps [========> ] 1.539856 s [racon::Polisher::initialize] aligning overlaps [=========> ] 1.747267 s [racon::Polisher::initialize] aligning overlaps [==========> ] 1.956047 s [racon::Polisher::initialize] aligning overlaps [===========> ] 2.116182 s [racon::Polisher::initialize] aligning overlaps [============> ] 2.344045 s [racon::Polisher::initialize] aligning overlaps [=============> ] 2.574778 s [racon::Polisher::initialize] aligning overlaps [==============> ] 2.764064 s [racon::Polisher::initialize] aligning overlaps [===============> ] 3.029655 s [racon::Polisher::initialize] aligning overlaps [================> ] 3.270839 s [racon::Polisher::initialize] aligning overlaps [=================> ] 3.482141 s [racon::Polisher::initialize] aligning overlaps [==================> ] 3.709627 s [racon::Polisher::initialize] aligning overlaps [===================>] 3.954100 s [racon::Polisher::initialize] aligning overlaps [====================] 4.158420 s +[racon::Polisher::initialize] transformed data into windows 0.088761 s +[racon::Polisher::polish] generating consensus [=> ] 0.926842 s [racon::Polisher::polish] generating consensus [==> ] 1.594304 s [racon::Polisher::polish] generating consensus [===> ] 2.325683 s [racon::Polisher::polish] generating consensus [====> ] 2.929058 s [racon::Polisher::polish] generating consensus [=====> ] 3.583869 s [racon::Polisher::polish] generating consensus [======> ] 4.352518 s [racon::Polisher::polish] generating consensus [=======> ] 5.129180 s [racon::Polisher::polish] generating consensus [========> ] 5.695831 s [racon::Polisher::polish] generating consensus [=========> ] 6.424228 s [racon::Polisher::polish] generating consensus [==========> ] 7.280235 s [racon::Polisher::polish] generating consensus [===========> ] 7.990224 s [racon::Polisher::polish] generating consensus [============> ] 8.768495 s [racon::Polisher::polish] generating consensus [=============> ] 9.443841 s [racon::Polisher::polish] generating consensus [==============> ] 10.169102 s [racon::Polisher::polish] generating consensus [===============> ] 10.955019 s [racon::Polisher::polish] generating consensus [================> ] 11.384469 s [racon::Polisher::polish] generating consensus [=================> ] 12.252713 s [racon::Polisher::polish] generating consensus [==================> ] 13.066805 s [racon::Polisher::polish] generating consensus [===================>] 13.848154 s [racon::Polisher::polish] generating consensus [====================] 14.432951 s +[racon::Polisher::] total = 18.801584 s +[ OK ] RaconPolishingTest.FragmentCorrectionWithQualitiesFullMhap (18803 ms) +[----------] 10 tests from RaconPolishingTest (68126 ms total) [----------] Global test environment tear-down -[==========] 15 tests from 2 test suites ran. (67758 ms total) +[==========] 15 tests from 2 test suites ran. (68141 ms total) [ PASSED ] 15 tests. make[1]: Leaving directory '/build/reproducible-path/racon-1.5.0' create-stamp debian/debhelper-build-stamp @@ -768,12 +804,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1445502/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/718479 and its subdirectories -I: Current time: Fri Feb 21 19:46:48 -12 2025 -I: pbuilder-time-stamp: 1740210408 +I: removing directory /srv/workspace/pbuilder/1445502 and its subdirectories +I: Current time: Sat Mar 28 04:11:44 +14 2026 +I: pbuilder-time-stamp: 1774620704 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/racon_1.5.0-3.diff: 88.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/racon_1.5.0-3.diff.gz b2/build.log: 84.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.8% -- replaced with stdout Sat Feb 22 07:48:47 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_racon_unstable_arm64_1740210527 + touch /var/log/reproducible-builds/diffoscope_stamp_racon_unstable_arm64_1740210527 + RESULT=0 + systemd-run '--description=diffoscope on racon/1.5.0-3 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_12-82629 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0 --run-session -c jenkins-reproducible-unstable-diffoscope-110471b3-ff02-4807-8d38-5bc7c352ba6e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/dbd-tmp-nqDK4Pk ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1/racon_1.5.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2/racon_1.5.0-3_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_12-82629.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/racon_1.5.0-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b1/racon_1.5.0-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.03tBrBF0/b2/racon_1.5.0-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 245ms CPU time consumed: 246ms _ __ __ _ ___ ___ _ __ | '__/ _` |/ __/ _ \| '_ \ | | | (_| | (_| (_) | | | | |_| \__,_|\___\___/|_| |_| Sat Feb 22 07:48:48 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Sat Feb 22 07:48:48 UTC 2025 I: racon from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-22 07:48:48] INFO: Starting at 2025-02-22 07:48:48.673345 [2025-02-22 07:48:48] INFO: Generating the pages of 1 package(s) [2025-02-22 07:48:49] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/racon didn't produce a buildlog, even though it has been built. [2025-02-22 07:48:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/racon_1.5.0-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/racon_1.5.0-3.diff.gz is missing [2025-02-22 07:48:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/racon_1.5.0-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/racon_1.5.0-3.diff.gz is missing [2025-02-22 07:48:49] INFO: Finished at 2025-02-22 07:48:49.422624, took: 0:00:00.749290 Sat Feb 22 07:48:49 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/racon.html Sat Feb 22 07:48:49 UTC 2025 I: Submitting .buildinfo files to external archives: Sat Feb 22 07:48:49 UTC 2025 I: Submitting 8.0K b1/racon_1.5.0-3_arm64.buildinfo.asc https://buildinfo.debian.net/8283040cc983540cf4e7943fd3d87ba6e464b280/racon_1.5.0-3_arm64 Sat Feb 22 07:48:50 UTC 2025 I: Submitting 8.0K b2/racon_1.5.0-3_arm64.buildinfo.asc https://buildinfo.debian.net/d3dcf8d9f1d76924d5a676f0e516686f4c532363/racon_1.5.0-3_arm64 Sat Feb 22 07:48:51 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sat Feb 22 07:48:51 UTC 2025 I: Done submitting .buildinfo files. Sat Feb 22 07:48:51 UTC 2025 I: Removing signed racon_1.5.0-3_arm64.buildinfo.asc files: removed './b1/racon_1.5.0-3_arm64.buildinfo.asc' removed './b2/racon_1.5.0-3_arm64.buildinfo.asc' 1740210531 arm64 unstable racon Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/racon_1.5.0-3.rbuild.log: 82.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/racon_1.5.0-3.rbuild.log.gz [2025-02-22 07:48:51] INFO: Starting at 2025-02-22 07:48:51.861472 [2025-02-22 07:48:51] INFO: Generating the pages of 1 package(s) [2025-02-22 07:48:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/racon_1.5.0-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/racon_1.5.0-3.diff.gz is missing [2025-02-22 07:48:52] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/racon_1.5.0-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/racon_1.5.0-3.diff.gz is missing [2025-02-22 07:48:52] INFO: Finished at 2025-02-22 07:48:52.585722, took: 0:00:00.724257 All cleanup done. Sat Feb 22 07:48:52 UTC 2025 - total duration: 0h 4m 12s. Sat Feb 22 07:48:52 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-k8eZa2uM, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 16.735s CPU time consumed: 7.894s