Running as unit: rb-build-arm64_12-92105.service ==================================================================================== Thu Apr 24 01:40:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Thu Apr 24 01:40:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-jZCU4Cpc" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 01:40:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Apr 24 01:40:13 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-J1A8Uk' Thu Apr 24 01:40:14 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 01:40:14 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-LIIDWe' ok, let's check if atropos is building anywhere yet… ok, atropos is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of atropos in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Apr 24 01:40:33 UTC 2025 I: starting to build atropos/trixie/arm64 on jenkins on '2025-04-24 01:40' Thu Apr 24 01:40:33 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/92105/console.log 1745458833 arm64 trixie atropos Thu Apr 24 01:40:33 UTC 2025 I: Downloading source for trixie/atropos=1.1.32+dfsg-2 --2025-04-24 01:40:33-- http://deb.debian.org/debian/pool/main/a/atropos/atropos_1.1.32%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘atropos_1.1.32+dfsg-2.dsc’ 0K .. 100% 186M=0s 2025-04-24 01:40:33 (186 MB/s) - ‘atropos_1.1.32+dfsg-2.dsc’ saved [2234/2234] --2025-04-24 01:40:33-- http://deb.debian.org/debian/pool/main/a/atropos/atropos_1.1.32%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2234 (2.2K) [text/prs.lines.tag] Saving to: ‘atropos_1.1.32+dfsg-2.dsc’ 0K .. 100% 186M=0s 2025-04-24 01:40:33 (186 MB/s) - ‘atropos_1.1.32+dfsg-2.dsc’ saved [2234/2234] Thu Apr 24 01:40:33 UTC 2025 I: atropos_1.1.32+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: atropos Binary: atropos Architecture: any Version: 1.1.32+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/jdidion/atropos Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/atropos Vcs-Git: https://salsa.debian.org/med-team/atropos.git Testsuite: autopkgtest Testsuite-Triggers: python3-all, python3-pytest Build-Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest , python3-jinja2 , python3-pysam Package-List: atropos deb science optional arch=any Checksums-Sha1: dc01c3a946454c29bd092ab6a12fe63681f95c73 3116652 atropos_1.1.32+dfsg.orig.tar.xz f5573ed2b77f40e463b24162d2f656f4eb0a99f5 6800 atropos_1.1.32+dfsg-2.debian.tar.xz Checksums-Sha256: efb5aef489afa25b1e3990d0320d1fedb32d84147c52bcf67cd9759170da0eed 3116652 atropos_1.1.32+dfsg.orig.tar.xz 691210b4b544206b89d4f979713002f19e3e6bc4fef07cd0289782b96ccdd77f 6800 atropos_1.1.32+dfsg-2.debian.tar.xz Files: feac304ad9679649959f69ace8899da1 3116652 atropos_1.1.32+dfsg.orig.tar.xz cd7c6edbbe1d3eee2bc386c019e378a7 6800 atropos_1.1.32+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmap/f4ACgkQPCZ2P2xn 5uKaaxAAwIg8RXnOn2okS7GKO+sU3VfpTVAg9KFrHNtbrVAuoPqlyrAGMOUpCrKl mBP/1jofjWRZ2Kh5aFMXxegNm8bMFdKeKT0XaDXaTOnhU6XH3qmOKkVn8ocJ/x+u +YF+37Ouu7za3vANfqS3CXpLWNBxDOf6+apXMTh6Sy0XeaEqlZMYVFkS1CL1qIQl xdTnvZIlYGCTWk6sTGSlwi+4QBnjV90n5rs+jxbZhidzedgs8D7c5OR57MinQhTq iwdB6xyZjZYgbJM0M5QQad/Zcs/tGFu/zvCJepyNoE0yTcL9KbReJ57FDXAG1WYl 8RMS7hxzAPF5lI+NOm6LR4vVTu/m7XJS7TAXgQ2RvwKrOeTj5fL4uSiZzffluuQ5 ZLF0AQWjisGk1rMLNSmM6lK1dL9diKPFWaOBLy8xzZGl6YTWM5cMC514jYgaIe5T GngeJOstEtt2iU4ULeDj7CcGWSUvvImK0FDcioox5QuM42GAl6zhU6vqC1Te4e6K 9PCPLh5kAfsq6rBCm2a6kjRUBr1eD8OABUdw8pvmLtLWB93NmA18/IMQPTghDU5G g+14+UbEK2F3qT/9JrP7RLeOcN0s75Hx2W5vHDA9Rl5zNOg4wCatVm59lEvbGpLW NLtG3ITKC8L7H8a3AzgPhJ5qHbKqYoMPmNUooEOS+C4z+xgrlmY= =LrLO -----END PGP SIGNATURE----- Thu Apr 24 01:40:33 UTC 2025 I: Checking whether the package is not for us Thu Apr 24 01:40:33 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Apr 24 01:40:33 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Apr 24 01:40:33 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Apr 24 01:40:33 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-DS2iZv' ==================================================================================== Thu Apr 24 01:40:35 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 atropos trixie /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN 1.1.32+dfsg-2" as arguments. Thu Apr 24 01:40:35 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-nqWnOvX8" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Apr 24 01:40:35 UTC 2025 I: Downloading source for trixie/atropos=1.1.32+dfsg-2 Reading package lists... NOTICE: 'atropos' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/atropos.git Please use: git clone https://salsa.debian.org/med-team/atropos.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (tar) [3117 kB] Get:3 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (diff) [6800 B] Fetched 3126 kB in 0s (27.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'atropos' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/atropos.git Please use: git clone https://salsa.debian.org/med-team/atropos.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (tar) [3117 kB] Get:3 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (diff) [6800 B] Fetched 3126 kB in 0s (27.6 MB/s) Download complete and in download only mode ============================================================================= Building atropos in trixie on arm64 on codethink04-arm64 now. Date: Thu Apr 24 02:40:35 BST 2025 Date UTC: Thu Apr 24 01:40:35 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 23 13:40:35 -12 2025 I: pbuilder-time-stamp: 1745458836 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [atropos_1.1.32+dfsg-2.dsc] I: copying [./atropos_1.1.32+dfsg.orig.tar.xz] I: copying [./atropos_1.1.32+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.32+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting atropos in atropos-1.1.32+dfsg dpkg-source: info: unpacking atropos_1.1.32+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.32+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying cy3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7b45d50e76e541b2a3936117bb62c96f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3010958' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_YEad --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1 --logfile b1/build.log atropos_1.1.32+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-loguru; however: Package python3-loguru is not installed. pbuilder-satisfydepends-dummy depends on python3-xphyle; however: Package python3-xphyle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-colorama{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250308 [115 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.13.0-1 [343 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.3-2 [1975 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.3-2 [4688 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.2-2 [10.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.2-2 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.2-2 [1044 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.3-2 [508 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.2-2 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.2-2 [1064 B] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-loguru all 0.7.3-1 [59.0 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-pokrok all 0.2.0-5 [11.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.23.0+ds-1+b1 [3417 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-setuptools-scm all 8.2.1-1 [41.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-xphyle all 4.4.4-6 [52.3 kB] Fetched 38.2 MB in 1s (41.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... 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Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../32-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../33-libcom-err2_1.47.2-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1+b1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../34-libidn2-0_2.3.8-2_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../35-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../36-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../37-libgnutls30t64_3.8.9-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.9-2) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../38-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../39-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../40-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../41-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../42-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../43-libsasl2-modules-db_2.1.28+dfsg1-9_arm64.deb ... 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Setting up python3.13-dev (3.13.3-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-loguru (0.7.3-1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.13.0-1) ... Setting up python3-all (3.13.2-2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.13.2-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.2-2) ... Setting up libhts3t64:arm64 (1.21+ds-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-all-dev (3.13.2-2) ... Setting up python3-pokrok (0.2.0-5) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-setuptools-scm (8.2.1-1) ... Setting up python3-xphyle (4.4.4-6) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.32+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align copying atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build/temp.linux-aarch64-cpython-313/atropos/align aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/align/_align.c -o build/temp.linux-aarch64-cpython-313/atropos/align/_align.o atropos/align/_align.c:2466:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2466 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/align/_align.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-aarch64-cpython-313/atropos/commands/trim aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-aarch64-cpython-313/atropos/io aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/io/_seqio.c -o build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/atropos -> build/scripts-3.13 changing mode of build/scripts-3.13/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' \ dh_auto_test -- --before-test="ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut {build_dir}/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:308: ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests I: pybuild base:311: cd /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build configfile: pytest.ini plugins: typeguard-4.4.2 collected 222 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 46%] tests/test_colorspace.py ................. [ 54%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 55%] tests/test_modifiers.py .................... [ 64%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py ................................ [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== tests/test_paired.py:638 /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py:638: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.timeout(10) tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_summary tests/test_paired.py::test_summary /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3030963) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 221 passed, 1 skipped, 6 warnings in 42.41s ================== make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running build_scripts running install_lib creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/.gitignore -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/README.md -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.adapters -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/legacy_report.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/stats.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/writers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/qualtrim.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/modifiers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/seqio.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/compression.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/colorspace.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_xopen.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_trim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_seqio.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_qualtrim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_paired.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_multicore.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_modifiers.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_filters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_commands.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_colorspace.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_atropos.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_adapters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/withplus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/toolong.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/suffix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.csfasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.myownextension -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.xz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.bz2 -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/s_1_sequence.txt.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/restfront.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/prefix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/multiblock.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/maxn.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lengths.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/bad_bases.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-front.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-both.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-back.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.unknown.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.second.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.first.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/suffix.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/stripped.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidmaq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidbfast.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid-no-zerocap.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut3.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.trimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/s_1_sequence.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/restfront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no-trim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn1.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.4.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowercase.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/examplefront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard-untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/SRR2040662_trimmed.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/filters.py to filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/writers.py to writers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/base.py to base.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/stats.py to stats.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/compression.py to compression.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/progress.py to progress.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/seqio.py to seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/colorspace.py to colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_adapters.py to test_adapters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_align.py to test_align.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_atropos.py to test_atropos.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_commands.py to test_commands.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_filters.py to test_filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_multicore.py to test_multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_paired.py to test_paired.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_seqio.py to test_seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_trim.py to test_trim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_xopen.py to test_xopen.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/utils.py to utils.cpython-313.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos-1.1.32.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin copying build/scripts-3.13/atropos -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin changing mode of /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.32+dfsg-2_arm64.deb'. dpkg-deb: building package 'atropos' in '../atropos_1.1.32+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../atropos_1.1.32+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../atropos_1.1.32+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3010958 and its subdirectories I: Current time: Wed Apr 23 13:44:56 -12 2025 I: pbuilder-time-stamp: 1745459096 Thu Apr 24 01:44:56 UTC 2025 I: Signing ./b1/atropos_1.1.32+dfsg-2_arm64.buildinfo as atropos_1.1.32+dfsg-2_arm64.buildinfo.asc Thu Apr 24 01:44:56 UTC 2025 I: Signed ./b1/atropos_1.1.32+dfsg-2_arm64.buildinfo as ./b1/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc Thu Apr 24 01:44:56 UTC 2025 - build #1 for atropos/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Apr 24 01:44:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-nqWnOvX8, removing. /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN: total 16 -rw-r--r-- 1 jenkins jenkins 2234 Jul 31 2024 atropos_1.1.32+dfsg-2.dsc drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 01:44 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 01:40 b2 -rw------- 1 jenkins jenkins 3372 Apr 24 01:40 rbuildlog.Gu1boVs /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1: total 1028 -rw-r--r-- 1 jenkins jenkins 644460 Apr 24 01:44 atropos-dbgsym_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6800 Apr 24 01:44 atropos_1.1.32+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Apr 24 01:44 atropos_1.1.32+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7385 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8267 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 209016 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1266 Apr 24 01:44 atropos_1.1.32+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 148459 Apr 24 01:44 build.log /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2: total 0 Thu Apr 24 01:44:57 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Apr 23 13:40:35 -12 2025 I: pbuilder-time-stamp: 1745458836 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [atropos_1.1.32+dfsg-2.dsc] I: copying [./atropos_1.1.32+dfsg.orig.tar.xz] I: copying [./atropos_1.1.32+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.32+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting atropos in atropos-1.1.32+dfsg dpkg-source: info: unpacking atropos_1.1.32+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.32+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying cy3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7b45d50e76e541b2a3936117bb62c96f' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3010958' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_YEad --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1 --logfile b1/build.log atropos_1.1.32+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-loguru; however: Package python3-loguru is not installed. pbuilder-satisfydepends-dummy depends on python3-xphyle; however: Package python3-xphyle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-colorama{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250308 [115 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.13.0-1 [343 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.3-2 [1975 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.3-2 [4688 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.2-2 [10.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.2-2 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.2-2 [1044 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.3-2 [508 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.2-2 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.2-2 [1064 B] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-loguru all 0.7.3-1 [59.0 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-pokrok all 0.2.0-5 [11.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.23.0+ds-1+b1 [3417 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-setuptools-scm all 8.2.1-1 [41.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-xphyle all 4.4.4-6 [52.3 kB] Fetched 38.2 MB in 1s (41.2 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20288 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_arm64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21300 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.2-2_arm64.deb ... Unpacking python3 (3.13.2-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cython3. Preparing to unpack .../16-cython3_3.0.11+dfsg-2+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-2+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... 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Setting up python3.13-dev (3.13.3-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-loguru (0.7.3-1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.13.0-1) ... Setting up python3-all (3.13.2-2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.13.2-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.2-2) ... Setting up libhts3t64:arm64 (1.21+ds-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-all-dev (3.13.2-2) ... Setting up python3-pokrok (0.2.0-5) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-setuptools-scm (8.2.1-1) ... Setting up python3-xphyle (4.4.4-6) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.32+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align copying atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build/temp.linux-aarch64-cpython-313/atropos/align aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/align/_align.c -o build/temp.linux-aarch64-cpython-313/atropos/align/_align.o atropos/align/_align.c:2466:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2466 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/align/_align.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-aarch64-cpython-313/atropos/commands/trim aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-aarch64-cpython-313/atropos/io aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/io/_seqio.c -o build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/atropos -> build/scripts-3.13 changing mode of build/scripts-3.13/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' \ dh_auto_test -- --before-test="ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut {build_dir}/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:308: ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests I: pybuild base:311: cd /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build configfile: pytest.ini plugins: typeguard-4.4.2 collected 222 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 46%] tests/test_colorspace.py ................. [ 54%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 55%] tests/test_modifiers.py .................... [ 64%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py ................................ [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== tests/test_paired.py:638 /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py:638: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.timeout(10) tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_summary tests/test_paired.py::test_summary /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3030963) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 221 passed, 1 skipped, 6 warnings in 42.41s ================== make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running build_scripts running install_lib creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/.gitignore -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/README.md -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.adapters -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/legacy_report.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/stats.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/writers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/qualtrim.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/modifiers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/seqio.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/compression.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/colorspace.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_xopen.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_trim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_seqio.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_qualtrim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_paired.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_multicore.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_modifiers.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_filters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_commands.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_colorspace.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_atropos.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_adapters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/withplus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/toolong.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/suffix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.csfasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.myownextension -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.xz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.bz2 -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/s_1_sequence.txt.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/restfront.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/prefix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/multiblock.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/maxn.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lengths.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/bad_bases.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-front.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-both.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-back.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.unknown.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.second.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.first.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/suffix.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/stripped.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidmaq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidbfast.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid-no-zerocap.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut3.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.trimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/s_1_sequence.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/restfront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no-trim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn1.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.4.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowercase.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/examplefront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard-untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/SRR2040662_trimmed.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/filters.py to filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/writers.py to writers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/base.py to base.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/stats.py to stats.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/compression.py to compression.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/progress.py to progress.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/seqio.py to seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/colorspace.py to colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_adapters.py to test_adapters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_align.py to test_align.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_atropos.py to test_atropos.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_commands.py to test_commands.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_filters.py to test_filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_multicore.py to test_multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_paired.py to test_paired.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_seqio.py to test_seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_trim.py to test_trim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_xopen.py to test_xopen.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/utils.py to utils.cpython-313.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos-1.1.32.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin copying build/scripts-3.13/atropos -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin changing mode of /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.32+dfsg-2_arm64.deb'. dpkg-deb: building package 'atropos' in '../atropos_1.1.32+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../atropos_1.1.32+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../atropos_1.1.32+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3010958 and its subdirectories I: Current time: Wed Apr 23 13:44:56 -12 2025 I: pbuilder-time-stamp: 1745459096 Thu Apr 24 01:44:58 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Apr 24 01:44:58 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Apr 24 01:44:58 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Apr 24 01:44:58 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-qWlr1z' ==================================================================================== Wed May 27 08:08:00 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 atropos trixie /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN 1.1.32+dfsg-2" as arguments. Wed May 27 08:08:00 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-5wmesw6S" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed May 27 08:08:00 UTC 2026 I: Downloading source for trixie/atropos=1.1.32+dfsg-2 Reading package lists... NOTICE: 'atropos' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/atropos.git Please use: git clone https://salsa.debian.org/med-team/atropos.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (tar) [3117 kB] Get:3 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (diff) [6800 B] Fetched 3126 kB in 0s (110 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'atropos' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/atropos.git Please use: git clone https://salsa.debian.org/med-team/atropos.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (dsc) [2234 B] Get:2 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (tar) [3117 kB] Get:3 http://deb.debian.org/debian trixie/main atropos 1.1.32+dfsg-2 (diff) [6800 B] Fetched 3126 kB in 0s (110 MB/s) Download complete and in download only mode ============================================================================= Re-Building atropos in trixie on arm64 on codethink03-arm64 now. Date: Wed May 27 09:08:00 BST 2026 Date UTC: Wed May 27 08:08:00 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_6nTY + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' atropos = debian-installer -o atropos = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' atropos = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_6nTY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2 --logfile b2/build.log atropos_1.1.32+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed May 27 22:08:00 +14 2026 I: pbuilder-time-stamp: 1779869280 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [atropos_1.1.32+dfsg-2.dsc] I: copying [./atropos_1.1.32+dfsg.orig.tar.xz] I: copying [./atropos_1.1.32+dfsg-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./atropos_1.1.32+dfsg-2.dsc: unsupported subcommand dpkg-source: info: extracting atropos in atropos-1.1.32+dfsg dpkg-source: info: unpacking atropos_1.1.32+dfsg.orig.tar.xz dpkg-source: info: unpacking atropos_1.1.32+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_install_depends_cython.patch dpkg-source: info: applying cy3 I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 27 08:08 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=921c172439bd43269dd819ed32ba99f5 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3113376 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_6nTY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2 --logfile b2/build.log atropos_1.1.32+dfsg-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, cython3, python3-all-dev, python3-setuptools, python3-setuptools-scm, python3-wheel, python3-loguru, python3-xphyle, python3-pytest, python3-jinja2, python3-pysam dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools-scm; however: Package python3-setuptools-scm is not installed. pbuilder-satisfydepends-dummy depends on python3-wheel; however: Package python3-wheel is not installed. pbuilder-satisfydepends-dummy depends on python3-loguru; however: Package python3-loguru is not installed. pbuilder-satisfydepends-dummy depends on python3-xphyle; however: Package python3-xphyle is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-jinja2; however: Package python3-jinja2 is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libp11-kit0{a} libpipeline1{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-colorama{a} python3-dev{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-loguru{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-pkg-resources{a} python3-pluggy{a} python3-pokrok{a} python3-pysam{a} python3-pytest{a} python3-setuptools{a} python3-setuptools-scm{a} python3-typeguard{a} python3-typing-extensions{a} python3-wheel{a} python3-xphyle{a} python3-zipp{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-babel python3-pygments wget 0 packages upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After unpacking 180 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.3-2 [855 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.3-2 [1998 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.2-2 [27.1 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-2 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.3-2 [1890 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.3-2 [751 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.2-2 [10.1 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.2-2 [28.1 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-2+b1 [2255 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250308 [115 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 55 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.11.0-1 [121 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.11.0-1 [28.2 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.13.0-1 [343 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.7.1-1 [145 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.21+ds-1 [426 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-5 [30.5 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.3-2 [1975 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.3-2 [4688 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.13.2-2 [10.3 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.13.2-2 [1068 B] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.2-2 [1044 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.3-2 [508 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.13.2-2 [26.1 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.13.2-2 [1064 B] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 python3-colorama all 0.4.6-4 [36.2 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.6.0-1 [65.3 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.8.0-1 [222 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.8.0-1 [724 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 97 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 python3-loguru all 0.7.3-1 [59.0 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 python3-pokrok all 0.2.0-5 [11.3 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.23.0+ds-1+b1 [3417 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.5-2 [250 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-setuptools-scm all 8.2.1-1 [41.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-xphyle all 4.4.4-6 [52.3 kB] Fetched 38.2 MB in 0s (102 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../libpython3.13-minimal_3.13.3-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.3-2) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.7.1-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.3-2_arm64.deb ... Unpacking python3.13-minimal (3.13.3-2) ... Setting up libpython3.13-minimal:arm64 (3.13.3-2) ... Setting up libexpat1:arm64 (2.7.1-1) ... Setting up python3.13-minimal (3.13.3-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20288 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.2-2_arm64.deb ... Unpacking python3-minimal (3.13.2-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-2_all.deb ... Unpacking tzdata (2025b-2) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.7-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.7-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.3-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.3-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.3-2_arm64.deb ... Unpacking python3.13 (3.13.3-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.2-2_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.2-2) ... Setting up python3-minimal (3.13.2-2) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21300 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.2-2_arm64.deb ... Unpacking python3 (3.13.2-2) ... 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Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.23-2) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' Local time is now: Wed May 27 08:08:47 UTC 2026. Universal Time is now: Wed May 27 08:08:47 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libexpat1-dev:arm64 (2.7.1-1) ... Setting up libunistring5:arm64 (1.3-2) ... 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Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libjs-sphinxdoc (8.1.3-5) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.3-2) ... Setting up libpython3-stdlib:arm64 (3.13.2-2) ... Setting up libpython3.13:arm64 (3.13.3-2) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up python3.13 (3.13.3-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.2-2) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-wheel (0.45.1-1) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-packaging (24.2-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libpython3.13-dev:arm64 (3.13.3-2) ... Setting up cython3 (3.0.11+dfsg-2+b1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-pluggy (1.5.0-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up dh-python (6.20250308) ... Setting up python3-more-itertools (10.6.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up libpython3-dev:arm64 (3.13.2-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-colorama (0.4.6-4) ... Setting up python3.13-dev (3.13.3-2) ... Setting up python3-pytest (8.3.5-2) ... Setting up python3-loguru (0.7.3-1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up libcurl3t64-gnutls:arm64 (8.13.0-1) ... Setting up python3-all (3.13.2-2) ... Setting up debhelper (13.24.2) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.13.2-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.13.2-2) ... Setting up libhts3t64:arm64 (1.21+ds-1) ... Setting up python3-pkg-resources (75.8.0-1) ... Setting up python3-all-dev (3.13.2-2) ... Setting up python3-pokrok (0.2.0-5) ... Setting up python3-pysam (0.23.0+ds-1+b1) ... Setting up python3-setuptools (75.8.0-1) ... Setting up python3-setuptools-scm (8.2.1-1) ... Setting up python3-xphyle (4.4.4-6) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.32+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_auto_clean I: pybuild base:311: python3.13 setup.py clean /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running clean removing '/build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it rm -rf .pytest_cache rm -rf atropos.egg-info rm -f atropos/align/_align.c atropos/commands/trim/_qualtrim.c atropos/io/_seqio.c make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /build/reproducible-path/atropos-1.1.32+dfsg/versioneer.py:625: SyntaxWarning: invalid escape sequence '\s' mo = re.search(r'=\s*"(.*)"', line) /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running build running build_py creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests copying tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos copying atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util copying atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io copying atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands copying atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align copying atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters copying atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim copying atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc copying atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error copying atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect copying atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): Compiling atropos/align/_align.pyx because it changed. Compiling atropos/commands/trim/_qualtrim.pyx because it changed. Compiling atropos/io/_seqio.pyx because it changed. [1/3] Cythonizing atropos/align/_align.pyx [2/3] Cythonizing atropos/commands/trim/_qualtrim.pyx [3/3] Cythonizing atropos/io/_seqio.pyx building 'atropos.align._align' extension creating build/temp.linux-aarch64-cpython-313/atropos/align aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/align/_align.c -o build/temp.linux-aarch64-cpython-313/atropos/align/_align.o atropos/align/_align.c:2466:9: warning: ‘Py_UNICODE’ is deprecated [-Wdeprecated-declarations] 2466 | Py_UNICODE *as_pyunicodes; | ^~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/align/_align.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so building 'atropos.commands.trim._qualtrim' extension creating build/temp.linux-aarch64-cpython-313/atropos/commands/trim aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/commands/trim/_qualtrim.c -o build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/commands/trim/_qualtrim.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so building 'atropos.io._seqio' extension creating build/temp.linux-aarch64-cpython-313/atropos/io aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.13 -c atropos/io/_seqio.c -o build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/atropos-1.1.32+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-313/atropos/io/_seqio.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so running build_scripts creating build/scripts-3.13 copying and adjusting bin/atropos -> build/scripts-3.13 changing mode of build/scripts-3.13/atropos from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' \ dh_auto_test -- --before-test="ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut {build_dir}/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data {build_dir}/tests" I: pybuild pybuild:308: ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/cut /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests && ln -s /build/reproducible-path/atropos-1.1.32+dfsg/tests/data /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests I: pybuild base:311: cd /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build; python3.13 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.13.3, pytest-8.3.5, pluggy-1.5.0 rootdir: /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build configfile: pytest.ini plugins: typeguard-4.4.2 collected 222 items tests/test_adapters.py ........ [ 3%] tests/test_align.py ................ [ 10%] tests/test_atropos.py .................................................. [ 33%] ............................s [ 46%] tests/test_colorspace.py ................. [ 54%] tests/test_commands.py . [ 54%] tests/test_filters.py .. [ 55%] tests/test_modifiers.py .................... [ 64%] tests/test_multicore.py ..... [ 66%] tests/test_paired.py ................................ [ 81%] tests/test_qualtrim.py . [ 81%] tests/test_seqio.py ................................... [ 97%] tests/test_trim.py .. [ 98%] tests/test_xopen.py .... [100%] =============================== warnings summary =============================== tests/test_paired.py:638 /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py:638: PytestUnknownMarkWarning: Unknown pytest.mark.timeout - is this a typo? You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/how-to/mark.html @pytest.mark.timeout(10) tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_summary tests/test_paired.py::test_summary /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3125139) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html ================= 221 passed, 1 skipped, 5 warnings in 37.22s ================== make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_auto_install --destdir=debian/atropos/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos /usr/lib/python3/dist-packages/setuptools/dist.py:493: SetuptoolsDeprecationWarning: Invalid dash-separated options !! ******************************************************************************** Usage of dash-separated 'description-file' will not be supported in future versions. Please use the underscore name 'description_file' instead. This deprecation is overdue, please update your project and remove deprecated calls to avoid build errors in the future. See https://setuptools.pypa.io/en/latest/userguide/declarative_config.html for details. ******************************************************************************** !! opt = self.warn_dash_deprecation(opt, section) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:270: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:79: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py set /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py to '1.1.32' running build_ext /build/reproducible-path/atropos-1.1.32+dfsg/setup.py:84: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running build_scripts running install_lib creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/.gitignore -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.pytest_cache/README.md -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/.pytest_cache copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/.adapters -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/_version.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/_version.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/sequencing_adapters.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/adapters/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/_align.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/align/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/legacy_report.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/stats.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/base.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/detect/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/error/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/qc/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/reports.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/cli.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/multicore.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/writers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/filters.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/qualtrim.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/modifiers.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/_qualtrim.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/trim/writers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/base.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/cli.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/legacy_report.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/reports.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/commands/stats.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/seqio.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/compression.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/_seqio.cpython-313-aarch64-linux-gnu.so -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/compression.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/progress.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/io/seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/colorspace.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/util/colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/atropos/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_xopen.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_trim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_seqio.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_qualtrim.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_paired.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_multicore.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_modifiers.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_filters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_commands.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_colorspace.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_atropos.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/utils.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_align.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/test_adapters.cpython-313-pytest-8.3.5.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__pycache__/__init__.cpython-313.pyc -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__pycache__ creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/withplus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/tooshort.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/toolong.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/suffix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/solid.csfasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.myownextension -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.xz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq.bz2 -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/simple.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/s_1_sequence.txt.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/restfront.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/prefix-adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired_bis_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/multiblock.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/maxn.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/lengths.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/illumina.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/big.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/bad_bases.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/adapter.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.qual -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/E3M.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/data/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/data creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter_anywhere.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard_adapter.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcardN.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/wildcard.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-front.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-both.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/unconditional-back.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.unknown.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.second.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.first.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/twoadapters.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN5.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/trimN3.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/suffix.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/stripped.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/sra.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidmaq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solidbfast.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.notrim.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid5p-anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/solid-no-zerocap.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut3.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small_mincut1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.trimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/small.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/s_1_sequence.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/restfront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/rest.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/polya.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/plus.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedu.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/pairedq.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis2_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_bis1_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.m14.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-untrimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-trimmed.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-too-short.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-separate.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-onlyA.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-m27.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth_adapter.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/paired-filterboth.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapb.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/overlapa.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/no-trim.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/nextseq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.noprimer.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/minlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn1.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.4.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxn0.2.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/maxlen.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowqual.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/lowercase.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/linked.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.2.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue68.1.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/issue46.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/interleaved.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/insert.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina64.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina5.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.info.txt -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/illumina.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/highq.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/examplefront.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/example.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq.gz -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/empty.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/dos.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/discard-untrimmed.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.2.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/back_repeat.1.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anywhere_repeat.fastq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels_wildcard.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored_no_indels.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/anchored-back.fasta -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/SRR2040662_trimmed.fq -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/cut/454.fa -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/cut copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/__init__.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_adapters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_align.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_atropos.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_colorspace.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_commands.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_filters.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_modifiers.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_multicore.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_paired.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_qualtrim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_seqio.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_trim.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/test_xopen.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests copying /build/reproducible-path/atropos-1.1.32+dfsg/.pybuild/cpython3_3.13/build/tests/utils.py -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/_version.py to _version.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/adapters/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/align/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/detect/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/error/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/qc/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/filters.py to filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/modifiers.py to modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/qualtrim.py to qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/trim/writers.py to writers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/base.py to base.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/cli.py to cli.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/legacy_report.py to legacy_report.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/multicore.py to multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/reports.py to reports.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/commands/stats.py to stats.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/compression.py to compression.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/progress.py to progress.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/io/seqio.py to seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/util/colorspace.py to colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_adapters.py to test_adapters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_align.py to test_align.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_atropos.py to test_atropos.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_colorspace.py to test_colorspace.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_commands.py to test_commands.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_filters.py to test_filters.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_modifiers.py to test_modifiers.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_multicore.py to test_multicore.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_paired.py to test_paired.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_qualtrim.py to test_qualtrim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_seqio.py to test_seqio.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_trim.py to test_trim.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/test_xopen.py to test_xopen.cpython-313.pyc byte-compiling /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/tests/utils.py to utils.cpython-313.pyc running install_egg_info running egg_info creating atropos.egg-info writing atropos.egg-info/PKG-INFO writing dependency_links to atropos.egg-info/dependency_links.txt writing requirements to atropos.egg-info/requires.txt writing top-level names to atropos.egg-info/top_level.txt writing manifest file 'atropos.egg-info/SOURCES.txt' reading manifest file 'atropos.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching 'README.rst' warning: no files found matching 'LICENSE.txt' warning: no files found matching 'atropos/report/templates/*' adding license file 'LICENSE' writing manifest file 'atropos.egg-info/SOURCES.txt' Copying atropos.egg-info to /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/lib/python3.13/dist-packages/atropos-1.1.32.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin copying build/scripts-3.13/atropos -> /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin changing mode of /build/reproducible-path/atropos-1.1.32+dfsg/debian/atropos/usr/bin/atropos to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_install find debian -type d -name __pycache__ | xargs rm -rf find debian -type d -name tests | xargs rm -rf find debian -type f -name .adapters -delete make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_installman -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'atropos-dbgsym' in '../atropos-dbgsym_1.1.32+dfsg-2_arm64.deb'. dpkg-deb: building package 'atropos' in '../atropos_1.1.32+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../atropos_1.1.32+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../atropos_1.1.32+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3113376 and its subdirectories I: Current time: Wed May 27 22:10:59 +14 2026 I: pbuilder-time-stamp: 1779869459 + false + set +x Wed May 27 08:10:59 UTC 2026 I: Signing ./b2/atropos_1.1.32+dfsg-2_arm64.buildinfo as atropos_1.1.32+dfsg-2_arm64.buildinfo.asc Wed May 27 08:10:59 UTC 2026 I: Signed ./b2/atropos_1.1.32+dfsg-2_arm64.buildinfo as ./b2/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc Wed May 27 08:10:59 UTC 2026 - build #2 for atropos/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed May 27 08:10:59 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-5wmesw6S, removing. /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN: total 168 -rw-r--r-- 1 jenkins jenkins 2234 Jul 31 2024 atropos_1.1.32+dfsg-2.dsc drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 01:44 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 24 01:48 b2 -rw------- 1 jenkins jenkins 152132 Apr 24 01:44 rbuildlog.Gu1boVs /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1: total 1040 -rw-r--r-- 1 jenkins jenkins 644460 Apr 24 01:44 atropos-dbgsym_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6800 Apr 24 01:44 atropos_1.1.32+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Apr 24 01:44 atropos_1.1.32+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7385 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8267 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 209016 Apr 24 01:44 atropos_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1266 Apr 24 01:44 atropos_1.1.32+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 148459 Apr 24 01:44 build.log /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2: total 1028 -rw-r--r-- 1 jenkins jenkins 644460 Apr 24 01:48 atropos-dbgsym_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 6800 Apr 24 01:48 atropos_1.1.32+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2234 Apr 24 01:48 atropos_1.1.32+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 7385 Apr 24 01:48 atropos_1.1.32+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8267 Apr 24 01:48 atropos_1.1.32+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1423 Apr 24 01:48 atropos_1.1.32+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 209016 Apr 24 01:48 atropos_1.1.32+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1266 Apr 24 01:48 atropos_1.1.32+dfsg-2_source.changes -rw-r--r-- 1 jenkins jenkins 150356 Apr 24 01:48 build.log Thu Apr 24 01:48:00 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Apr 24 01:48:01 UTC 2025 I: atropos_1.1.32+dfsg-2_arm64.changes: Format: 1.8 Date: Wed, 31 Jul 2024 10:59:45 +0200 Source: atropos Binary: atropos atropos-dbgsym Architecture: arm64 Version: 1.1.32+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: atropos - NGS read trimming tool that is specific, sensitive, and speedy Changes: atropos (1.1.32+dfsg-2) unstable; urgency=medium . * Team upload. * Switch back to Cython3, it works. Checksums-Sha1: 14832b2562ca11a24c01becfbd6d7cbb183c0d89 644460 atropos-dbgsym_1.1.32+dfsg-2_arm64.deb c0400cebe9b3cdd6629e1956d8a16285bf6978b7 7385 atropos_1.1.32+dfsg-2_arm64.buildinfo 3c4a21fa734374c3d69e9b5d81d99f9d6959ef7f 209016 atropos_1.1.32+dfsg-2_arm64.deb Checksums-Sha256: 4a5ed29325a6c26dcdea23a10b32d1eaa0ca215b55569c9dcec08b66ba754514 644460 atropos-dbgsym_1.1.32+dfsg-2_arm64.deb 10ddc9e8c65dc4837548d9fcdbd1ab615ae918c81cabbdeb9dd8f41d4b51f3c5 7385 atropos_1.1.32+dfsg-2_arm64.buildinfo 8651cf4d25c7d4a52a77e7063e1f6ab8c01f74fe36b1233b9d53384843b5bd1c 209016 atropos_1.1.32+dfsg-2_arm64.deb Files: 351c68c6bac0e289dba5177e5f0832e7 644460 debug optional atropos-dbgsym_1.1.32+dfsg-2_arm64.deb 3ab9ca439f46fac940ecb0c5a5758fa5 7385 science optional atropos_1.1.32+dfsg-2_arm64.buildinfo 21d994c7c8a97ca3bfde7554bda90cd9 209016 science optional atropos_1.1.32+dfsg-2_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/atropos_1.1.32+dfsg-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/atropos_1.1.32+dfsg-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/atropos_1.1.32+dfsg-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/atropos_1.1.32+dfsg-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/atropos_1.1.32+dfsg-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/atropos_1.1.32+dfsg-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-24 01:44:57.732521524 +0000 +++ b2/build.log 2025-04-24 01:48:00.324643273 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Apr 23 13:40:35 -12 2025 -I: pbuilder-time-stamp: 1745458836 +I: Current time: Wed May 27 22:08:00 +14 2026 +I: pbuilder-time-stamp: 1779869280 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying cy3 I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 27 08:08 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7b45d50e76e541b2a3936117bb62c96f' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3010958' - PS1='# ' - PS2='> ' + INVOCATION_ID=921c172439bd43269dd819ed32ba99f5 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3113376 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_YEad --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1 --logfile b1/build.log atropos_1.1.32+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/pbuilderrc_6nTY --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2 --logfile b2/build.log atropos_1.1.32+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3010958/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -235,7 +267,7 @@ Get: 105 http://deb.debian.org/debian trixie/main arm64 python3-setuptools-scm all 8.2.1-1 [41.2 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 python3-wheel all 0.45.1-1 [56.7 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 python3-xphyle all 4.4.4-6 [52.3 kB] -Fetched 38.2 MB in 1s (41.2 MB/s) +Fetched 38.2 MB in 0s (102 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.13-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) @@ -591,8 +623,8 @@ Setting up tzdata (2025b-2) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Apr 24 01:41:53 UTC 2025. -Universal Time is now: Thu Apr 24 01:41:53 UTC 2025. +Local time is now: Wed May 27 08:08:47 UTC 2026. +Universal Time is now: Wed May 27 08:08:47 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -690,7 +722,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/atropos-1.1.32+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../atropos_1.1.32+dfsg-2_source.changes dpkg-buildpackage: info: source package atropos dpkg-buildpackage: info: source version 1.1.32+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -905,14 +941,13 @@ tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_no_writer_process -tests/test_paired.py::test_no_writer_process tests/test_paired.py::test_summary tests/test_paired.py::test_summary - /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3030963) is multi-threaded, use of fork() may lead to deadlocks in the child. + /usr/lib/python3.13/multiprocessing/popen_fork.py:67: DeprecationWarning: This process (pid=3125139) is multi-threaded, use of fork() may lead to deadlocks in the child. self.pid = os.fork() -- Docs: https://docs.pytest.org/en/stable/how-to/capture-warnings.html -================= 221 passed, 1 skipped, 6 warnings in 42.41s ================== +================= 221 passed, 1 skipped, 5 warnings in 37.22s ================== make[1]: Leaving directory '/build/reproducible-path/atropos-1.1.32+dfsg' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1397,12 +1432,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3113376/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3010958 and its subdirectories -I: Current time: Wed Apr 23 13:44:56 -12 2025 -I: pbuilder-time-stamp: 1745459096 +I: removing directory /srv/workspace/pbuilder/3113376 and its subdirectories +I: Current time: Wed May 27 22:10:59 +14 2026 +I: pbuilder-time-stamp: 1779869459 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/atropos_1.1.32+dfsg-2.diff: 66.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/atropos_1.1.32+dfsg-2.diff.gz b2/build.log: 89.8% -- replaced with stdout Compressing the 1st log... b1/build.log: 90.2% -- replaced with stdout Thu Apr 24 01:48:02 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_atropos_trixie_arm64_1745459282 + touch /var/log/reproducible-builds/diffoscope_stamp_atropos_trixie_arm64_1745459282 + RESULT=0 + systemd-run '--description=diffoscope on atropos/1.1.32+dfsg-2 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_12-92105 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN --run-session -c jenkins-reproducible-trixie-diffoscope-dabb21ff-aab0-4193-ac2a-275f33443a35 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/dbd-tmp-w9hFlUM ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1/atropos_1.1.32+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2/atropos_1.1.32+dfsg-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_12-92105.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/atropos_1.1.32+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b1/atropos_1.1.32+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.mytOexNN/b2/atropos_1.1.32+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 243ms CPU time consumed: 239ms _ __ _| |_ _ __ ___ _ __ ___ ___ / _` | __| '__/ _ \| '_ \ / _ \/ __| | (_| | |_| | | (_) | |_) | (_) \__ \ \__,_|\__|_| \___/| .__/ \___/|___/ |_| Thu Apr 24 01:48:03 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Thu Apr 24 01:48:03 UTC 2025 I: atropos from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-24 01:48:04] INFO: Starting at 2025-04-24 01:48:04.003025 [2025-04-24 01:48:04] INFO: Generating the pages of 1 package(s) [2025-04-24 01:48:04] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/atropos didn't produce a buildlog, even though it has been built. [2025-04-24 01:48:04] INFO: Finished at 2025-04-24 01:48:04.769405, took: 0:00:00.766389 Thu Apr 24 01:48:04 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/atropos.html Thu Apr 24 01:48:04 UTC 2025 I: Submitting .buildinfo files to external archives: Thu Apr 24 01:48:04 UTC 2025 I: Submitting 12K b1/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/c0400cebe9b3cdd6629e1956d8a16285bf6978b7/atropos_1.1.32+dfsg-2_arm64 Thu Apr 24 01:48:20 UTC 2025 I: Submitting 12K b2/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/1da0ccf95ad9a575d0b958a475c722d9021ec82b/atropos_1.1.32+dfsg-2_arm64 Thu Apr 24 01:48:40 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Apr 24 01:48:40 UTC 2025 I: Done submitting .buildinfo files. Thu Apr 24 01:48:40 UTC 2025 I: Removing signed atropos_1.1.32+dfsg-2_arm64.buildinfo.asc files: removed './b1/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc' removed './b2/atropos_1.1.32+dfsg-2_arm64.buildinfo.asc' 1745459320 arm64 trixie atropos Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/atropos_1.1.32+dfsg-2.rbuild.log: 88.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/atropos_1.1.32+dfsg-2.rbuild.log.gz [2025-04-24 01:48:40] INFO: Starting at 2025-04-24 01:48:40.411681 [2025-04-24 01:48:40] INFO: Generating the pages of 1 package(s) [2025-04-24 01:48:40] INFO: Finished at 2025-04-24 01:48:40.862614, took: 0:00:00.450939 All cleanup done. Thu Apr 24 01:48:40 UTC 2025 - total duration: 0h 7m 50s. Thu Apr 24 01:48:40 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-jZCU4Cpc, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 8min 27.514s CPU time consumed: 7.761s