Running as unit: rb-build-arm64_12-92822.service ==================================================================================== Sun Apr 27 10:08:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_12) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Sun Apr 27 10:08:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-5VxRUfWt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Apr 27 10:08:59 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sun Apr 27 10:08:59 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-eYiPYO' Sun Apr 27 10:09:00 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Apr 27 10:09:00 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-BfTdXA' ok, let's check if freesasa is building anywhere yet… ok, freesasa is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of freesasa in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Sun Apr 27 10:09:01 UTC 2025 I: starting to build freesasa/trixie/arm64 on jenkins on '2025-04-27 10:08' Sun Apr 27 10:09:01 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_12/92822/console.log 1745748541 arm64 trixie freesasa Sun Apr 27 10:09:01 UTC 2025 I: Downloading source for trixie/freesasa=2.1.2-4 --2025-04-27 10:09:02-- http://deb.debian.org/debian/pool/main/f/freesasa/freesasa_2.1.2-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2028 (2.0K) [text/prs.lines.tag] Saving to: ‘freesasa_2.1.2-4.dsc’ 0K . 100% 321M=0s 2025-04-27 10:09:02 (321 MB/s) - ‘freesasa_2.1.2-4.dsc’ saved [2028/2028] --2025-04-27 10:09:02-- http://deb.debian.org/debian/pool/main/f/freesasa/freesasa_2.1.2-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2028 (2.0K) [text/prs.lines.tag] Saving to: ‘freesasa_2.1.2-4.dsc’ 0K . 100% 321M=0s 2025-04-27 10:09:02 (321 MB/s) - ‘freesasa_2.1.2-4.dsc’ saved [2028/2028] Sun Apr 27 10:09:02 UTC 2025 I: freesasa_2.1.2-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: freesasa Binary: freesasa Architecture: any Version: 2.1.2-4 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://freesasa.github.io Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/freesasa Vcs-Git: https://salsa.debian.org/debichem-team/freesasa.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev Package-List: freesasa deb science optional arch=any Checksums-Sha1: 5832e4bb0d2101d9e6d360b2c78bf3cb5bab5cfb 3281121 freesasa_2.1.2.orig.tar.gz 1230bc21930313cc6f8a6c49e3da1a424758e343 3380 freesasa_2.1.2-4.debian.tar.xz Checksums-Sha256: 98c3ebd8877daf1a886ae4b7f124b81dcb771dea7a6a864763f3e32043bfe901 3281121 freesasa_2.1.2.orig.tar.gz 11d1172147e756a68dc54275fcfcd644cc3b475722c28c2c805e60f2db66fd85 3380 freesasa_2.1.2-4.debian.tar.xz Files: 620ec39bf204863caedfca580d4c79f3 3281121 freesasa_2.1.2.orig.tar.gz 1cb27a3800bd0e3f671b1704e3715838 3380 freesasa_2.1.2-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEdyKS9veshfrgQdQe5fQ/nCc08ocFAmTTcQoSHG1lcmt5c0Bk ZWJpYW4ub3JnAAoJEOX0P5wnNPKHuMIP/jKSs2N6c7uDlKp2weVtQwTuWXiSEi2T YM95s4encmHoDIBIVuHNDk2EXVG81V4tZ/O0iSZYbIjwTYti7jU4OEqSm5UUli8g PMoluztxJeXg6AS8aFfTBOxJLx53fRA/T57p3KuUOqqpAT2Kxrq11Hi4oK/4dU/k BUTrI6/mMmK01VE9o2pRdFlIN0aYGLmtT2enUWcb5f+iYFMX2o+cvDMHX7aXeYFD ch/O7fAxWjeOdH11JyZH7H9SUtcrhTSSDJC4i/Tw+vo7CGPiVj+YPkX8zWZXwX3v KWW0mnCTMibUy/buxZ7SDwCf3Gi7DPch4yayZq1O+QH2qhK9zaQE+cErC6OP+DH2 ni7clCFv7qz64dwQ3iC9K/PBvOZ/HSug09s1G311T7YYPjdd+eTovmOfSf/V3OwN Dtn220y1vKfiDfzPnaBj1DgX5iDZZwrpwFROC49OAKQNplbSyzY5qnCpY/Xv2uZ9 edMpOLu9ddb72sQmsubW8msf9jGSggwJ1N5WGbO8ULpGIgZK/tgZl9gt88mHZMMt L/9U+74ipFP7v/Kwb9Cn+y393hIc0FR9DFZt+5/xHqTrtoykHNhboRdy1pHz6IfM 1T6WiCEVmlVKcqMZJ36Sey6NSjTLjjQdvoWRTxbKSJJT14RcCeg1iVjYD+jxWHc0 tT5snolJadl9 =MAAk -----END PGP SIGNATURE----- Sun Apr 27 10:09:02 UTC 2025 I: Checking whether the package is not for us Sun Apr 27 10:09:02 UTC 2025 I: Starting 1st build on remote node codethink04-arm64.debian.net. Sun Apr 27 10:09:02 UTC 2025 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Sun Apr 27 10:09:02 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sun Apr 27 10:09:02 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-bvoU2H' ==================================================================================== Sun Apr 27 10:09:03 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 freesasa trixie /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ 2.1.2-4" as arguments. Sun Apr 27 10:09:03 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-nfgRK5vX" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Apr 27 10:09:03 UTC 2025 I: Downloading source for trixie/freesasa=2.1.2-4 Reading package lists... NOTICE: 'freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/freesasa.git Please use: git clone https://salsa.debian.org/debichem-team/freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3287 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (dsc) [2028 B] Get:2 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (tar) [3281 kB] Get:3 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (diff) [3380 B] Fetched 3287 kB in 0s (31.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/freesasa.git Please use: git clone https://salsa.debian.org/debichem-team/freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3287 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (dsc) [2028 B] Get:2 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (tar) [3281 kB] Get:3 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (diff) [3380 B] Fetched 3287 kB in 0s (31.4 MB/s) Download complete and in download only mode ============================================================================= Building freesasa in trixie on arm64 on codethink04-arm64 now. Date: Sun Apr 27 11:09:04 BST 2025 Date UTC: Sun Apr 27 10:09:04 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 26 22:09:04 -12 2025 I: pbuilder-time-stamp: 1745748544 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [freesasa_2.1.2-4.dsc] I: copying [./freesasa_2.1.2.orig.tar.gz] I: copying [./freesasa_2.1.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./freesasa_2.1.2-4.dsc: unsupported subcommand dpkg-source: info: extracting freesasa in freesasa-2.1.2 dpkg-source: info: unpacking freesasa_2.1.2.orig.tar.gz dpkg-source: info: unpacking freesasa_2.1.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-gnu++-setting.patch dpkg-source: info: applying fix-manpage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='04a784b096f94a5182ed27cca3cc2db3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2430395' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_sqnB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1 --logfile b1/build.log freesasa_2.1.2-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libjson-c-dev{a} libjson-c5{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 13.9 MB of archives. After unpacking 56.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gemmi-dev arm64 0.6.5+ds-3 [1072 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libjson-c5 arm64 0.18+ds-1 [45.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libjson-c-dev arm64 0.18+ds-1 [75.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libxml2-dev arm64 2.12.7+dfsg+really2.9.14-0.4 [750 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 13.9 MB in 0s (56.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... 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Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libjson-c5:arm64 (0.18+ds-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libjson-c-dev:arm64 (0.18+ds-1) ... Setting up gemmi-dev (0.6.5+ds-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxml2-dev:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:42: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:42: the top level configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.ac:123: the top level configure.ac:16: installing './compile' configure.ac:46: installing './config.guess' configure.ac:46: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for sqrt in -lm... yes checking for dlsym in -ldl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for inline... inline checking for size_t... (cached) yes checking for C/C++ restrict keyword... __restrict__ checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for inline... (cached) inline checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for memset... yes checking for mkdir... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for getopt_long... yes checking for getline... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking for pthread_create in -lpthread... yes checking for pthread.h... yes checking for xmllint... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libxml-2.0... yes checking for json_object_get in -ljson-c... yes checking for json-c/json_object.h... yes checking for jsonlint... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/Doxyfile config.status: creating doc/man/freesasa.1 config.status: creating tests/Makefile config.status: creating share/Makefile config.status: creating tests/test-cli config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_build -- freesasa_LDADD='libfreesasa.a ${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2' make -j12 "freesasa_LDADD=libfreesasa.a \${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2" make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make all-recursive make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making all in src make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o main.o main.cc g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o cif.o cif.cc gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier.o classifier.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_protor.o classifier_protor.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_oons.o classifier_oons.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_naccess.o classifier_naccess.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o coord.o coord.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o pdb.o pdb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o log.o log.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_lr.o sasa_lr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_sr.o sasa_sr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o structure.o structure.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o node.o node.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o freesasa.o freesasa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o nb.o nb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o util.o util.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o rsa.o rsa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o selection.o selection.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o lexer.o lexer.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o parser.o parser.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o json.o json.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o xml.o xml.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o example.o example.c rm -f libfreesasa.a ar cr libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o json.o xml.o ranlib libfreesasa.a gcc -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wl,-z,relro -Wl,-z,now -o example example.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o freesasa main.o cif.o libfreesasa.a /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a -lz -ljson-c -lxml2 -lpthread -ldl -lm make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making all in doc make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making all in tests make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making all in share make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making check in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making check in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making check in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make check-TESTS make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' PASS: test-cli ============================================================================ Testsuite summary for FreeSASA 2.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making check in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/freesasa/ make -j12 install DESTDIR=/build/reproducible-path/freesasa-2.1.2/debian/freesasa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making install in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/install -c -m 644 freesasa.h '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' ( cd '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' && ranlib libfreesasa.a ) make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' /usr/bin/install -c -m 644 man/freesasa.1 '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making install in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making install in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' /usr/bin/install -c -m 644 dssp.config naccess.config oons.config protor.config '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_arm64.deb'. dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2430395 and its subdirectories I: Current time: Sat Apr 26 22:11:10 -12 2025 I: pbuilder-time-stamp: 1745748670 Sun Apr 27 10:11:10 UTC 2025 I: Signing ./b1/freesasa_2.1.2-4_arm64.buildinfo as freesasa_2.1.2-4_arm64.buildinfo.asc Sun Apr 27 10:11:10 UTC 2025 I: Signed ./b1/freesasa_2.1.2-4_arm64.buildinfo as ./b1/freesasa_2.1.2-4_arm64.buildinfo.asc Sun Apr 27 10:11:10 UTC 2025 - build #1 for freesasa/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sun Apr 27 10:11:10 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-nfgRK5vX, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 10:11 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 10:09 b2 -rw-r--r-- 1 jenkins jenkins 2028 Aug 9 2023 freesasa_2.1.2-4.dsc -rw------- 1 jenkins jenkins 3141 Apr 27 10:09 rbuildlog.9wW2vE3 /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1: total 1824 -rw-r--r-- 1 jenkins jenkins 42340 Apr 27 10:11 build.log -rw-r--r-- 1 jenkins jenkins 1314224 Apr 27 10:11 freesasa-dbgsym_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3380 Apr 27 10:11 freesasa_2.1.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2028 Apr 27 10:11 freesasa_2.1.2-4.dsc -rw-r--r-- 1 jenkins jenkins 5149 Apr 27 10:11 freesasa_2.1.2-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6031 Apr 27 10:11 freesasa_2.1.2-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Apr 27 10:11 freesasa_2.1.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 473996 Apr 27 10:11 freesasa_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1198 Apr 27 10:11 freesasa_2.1.2-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2: total 0 Sun Apr 27 10:11:11 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sat Apr 26 22:09:04 -12 2025 I: pbuilder-time-stamp: 1745748544 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [freesasa_2.1.2-4.dsc] I: copying [./freesasa_2.1.2.orig.tar.gz] I: copying [./freesasa_2.1.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./freesasa_2.1.2-4.dsc: unsupported subcommand dpkg-source: info: extracting freesasa in freesasa-2.1.2 dpkg-source: info: unpacking freesasa_2.1.2.orig.tar.gz dpkg-source: info: unpacking freesasa_2.1.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-gnu++-setting.patch dpkg-source: info: applying fix-manpage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='04a784b096f94a5182ed27cca3cc2db3' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2430395' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_sqnB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1 --logfile b1/build.log freesasa_2.1.2-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libjson-c-dev{a} libjson-c5{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 13.9 MB of archives. After unpacking 56.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gemmi-dev arm64 0.6.5+ds-3 [1072 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libjson-c5 arm64 0.18+ds-1 [45.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libjson-c-dev arm64 0.18+ds-1 [75.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libxml2-dev arm64 2.12.7+dfsg+really2.9.14-0.4 [750 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 13.9 MB in 0s (56.7 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. 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Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libjson-c5:arm64 (0.18+ds-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libjson-c-dev:arm64 (0.18+ds-1) ... Setting up gemmi-dev (0.6.5+ds-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxml2-dev:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:42: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:42: the top level configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.ac:123: the top level configure.ac:16: installing './compile' configure.ac:46: installing './config.guess' configure.ac:46: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for sqrt in -lm... yes checking for dlsym in -ldl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for inline... inline checking for size_t... (cached) yes checking for C/C++ restrict keyword... __restrict__ checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for inline... (cached) inline checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for memset... yes checking for mkdir... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for getopt_long... yes checking for getline... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking for pthread_create in -lpthread... yes checking for pthread.h... yes checking for xmllint... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libxml-2.0... yes checking for json_object_get in -ljson-c... yes checking for json-c/json_object.h... yes checking for jsonlint... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/Doxyfile config.status: creating doc/man/freesasa.1 config.status: creating tests/Makefile config.status: creating share/Makefile config.status: creating tests/test-cli config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_build -- freesasa_LDADD='libfreesasa.a ${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2' make -j12 "freesasa_LDADD=libfreesasa.a \${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2" make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make all-recursive make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making all in src make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o main.o main.cc g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o cif.o cif.cc gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier.o classifier.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_protor.o classifier_protor.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_oons.o classifier_oons.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_naccess.o classifier_naccess.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o coord.o coord.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o pdb.o pdb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o log.o log.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_lr.o sasa_lr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_sr.o sasa_sr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o structure.o structure.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o node.o node.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o freesasa.o freesasa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o nb.o nb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o util.o util.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o rsa.o rsa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o selection.o selection.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o lexer.o lexer.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o parser.o parser.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o json.o json.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o xml.o xml.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o example.o example.c rm -f libfreesasa.a ar cr libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o json.o xml.o ranlib libfreesasa.a gcc -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wl,-z,relro -Wl,-z,now -o example example.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o freesasa main.o cif.o libfreesasa.a /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a -lz -ljson-c -lxml2 -lpthread -ldl -lm make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making all in doc make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making all in tests make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making all in share make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making check in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making check in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making check in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make check-TESTS make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' PASS: test-cli ============================================================================ Testsuite summary for FreeSASA 2.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making check in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/freesasa/ make -j12 install DESTDIR=/build/reproducible-path/freesasa-2.1.2/debian/freesasa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making install in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/install -c -m 644 freesasa.h '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' ( cd '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' && ranlib libfreesasa.a ) make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' /usr/bin/install -c -m 644 man/freesasa.1 '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making install in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making install in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' /usr/bin/install -c -m 644 dssp.config naccess.config oons.config protor.config '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_arm64.deb'. dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2430395 and its subdirectories I: Current time: Sat Apr 26 22:11:10 -12 2025 I: pbuilder-time-stamp: 1745748670 Sun Apr 27 10:11:12 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Sun Apr 27 10:11:12 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Sun Apr 27 10:11:12 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sun Apr 27 10:11:12 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-RlhHO1' ==================================================================================== Sat May 30 16:34:13 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 freesasa trixie /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ 2.1.2-4" as arguments. Sat May 30 16:34:13 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-fmq5jyYq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat May 30 16:34:14 UTC 2026 I: Downloading source for trixie/freesasa=2.1.2-4 Reading package lists... NOTICE: 'freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/freesasa.git Please use: git clone https://salsa.debian.org/debichem-team/freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3287 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (dsc) [2028 B] Get:2 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (tar) [3281 kB] Get:3 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (diff) [3380 B] Fetched 3287 kB in 0s (84.0 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'freesasa' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/freesasa.git Please use: git clone https://salsa.debian.org/debichem-team/freesasa.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3287 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (dsc) [2028 B] Get:2 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (tar) [3281 kB] Get:3 http://deb.debian.org/debian trixie/main freesasa 2.1.2-4 (diff) [3380 B] Fetched 3287 kB in 0s (84.0 MB/s) Download complete and in download only mode ============================================================================= Re-Building freesasa in trixie on arm64 on codethink03-arm64 now. Date: Sat May 30 17:34:14 BST 2026 Date UTC: Sat May 30 16:34:14 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_Olwj + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' freesasa = debian-installer -o freesasa = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' freesasa = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_Olwj --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2 --logfile b2/build.log freesasa_2.1.2-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun May 31 06:34:14 +14 2026 I: pbuilder-time-stamp: 1780158854 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [freesasa_2.1.2-4.dsc] I: copying [./freesasa_2.1.2.orig.tar.gz] I: copying [./freesasa_2.1.2-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./freesasa_2.1.2-4.dsc: unsupported subcommand dpkg-source: info: extracting freesasa in freesasa-2.1.2 dpkg-source: info: unpacking freesasa_2.1.2.orig.tar.gz dpkg-source: info: unpacking freesasa_2.1.2-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no-gnu++-setting.patch dpkg-source: info: applying fix-manpage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 May 30 16:34 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=ad8b413dcc8540a481b5585f7343400d LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2019515 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_Olwj --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2 --logfile b2/build.log freesasa_2.1.2-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), gemmi-dev, libjson-c-dev, libxml2-dev, pkg-config, tao-pegtl-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on gemmi-dev; however: Package gemmi-dev is not installed. pbuilder-satisfydepends-dummy depends on libjson-c-dev; however: Package libjson-c-dev is not installed. pbuilder-satisfydepends-dummy depends on libxml2-dev; however: Package libxml2-dev is not installed. pbuilder-satisfydepends-dummy depends on pkg-config; however: Package pkg-config is not installed. pbuilder-satisfydepends-dummy depends on tao-pegtl-dev; however: Package tao-pegtl-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gemmi-dev{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libjson-c-dev{a} libjson-c5{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpkgconf3{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libxml2-dev{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} tao-pegtl-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 39 newly installed, 0 to remove and 0 not upgraded. Need to get 13.9 MB of archives. After unpacking 56.9 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-4 [93.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-7 [285 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 gemmi-dev arm64 0.6.5+ds-3 [1072 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libjson-c5 arm64 0.18+ds-1 [45.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libjson-c-dev arm64 0.18+ds-1 [75.1 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libxml2-dev arm64 2.12.7+dfsg+really2.9.14-0.4 [750 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 13.9 MB in 0s (86.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-4_arm64.deb ... Unpacking bsdextrautils (2.41-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-1_arm64.deb ... Unpacking gettext (0.23.1-1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package tao-pegtl-dev. Preparing to unpack .../29-tao-pegtl-dev_3.2.7-1_all.deb ... Unpacking tao-pegtl-dev (3.2.7-1) ... Selecting previously unselected package gemmi-dev. Preparing to unpack .../30-gemmi-dev_0.6.5+ds-3_arm64.deb ... Unpacking gemmi-dev (0.6.5+ds-3) ... Selecting previously unselected package libjson-c5:arm64. Preparing to unpack .../31-libjson-c5_0.18+ds-1_arm64.deb ... Unpacking libjson-c5:arm64 (0.18+ds-1) ... Selecting previously unselected package libjson-c-dev:arm64. Preparing to unpack .../32-libjson-c-dev_0.18+ds-1_arm64.deb ... Unpacking libjson-c-dev:arm64 (0.18+ds-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../33-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package libxml2-dev:arm64. Preparing to unpack .../34-libxml2-dev_2.12.7+dfsg+really2.9.14-0.4_arm64.deb ... Unpacking libxml2-dev:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../35-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../36-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package pkg-config:arm64. Preparing to unpack .../37-pkg-config_1.8.1-4_arm64.deb ... Unpacking pkg-config:arm64 (1.8.1-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../38-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up autoconf (2.72-3.1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libjson-c5:arm64 (0.18+ds-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-4) ... Setting up libjson-c-dev:arm64 (0.18+ds-1) ... Setting up gemmi-dev (0.6.5+ds-3) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxml2-dev:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-7) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andrius Merkys dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:42: warning: The macro 'AC_PROG_CC_C99' is obsolete. configure.ac:42: You should run autoupdate. ./lib/autoconf/c.m4:1662: AC_PROG_CC_C99 is expanded from... configure.ac:42: the top level configure.ac:123: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:743: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:736: AC_PROG_LEX is expanded from... configure.ac:123: the top level configure.ac:16: installing './compile' configure.ac:46: installing './config.guess' configure.ac:46: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking for ranlib... ranlib checking for sqrt in -lm... yes checking for dlsym in -ldl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for inttypes.h... (cached) yes checking for libintl.h... yes checking for malloc.h... yes checking for stddef.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for strings.h... (cached) yes checking for sys/time.h... yes checking for unistd.h... (cached) yes checking for dlfcn.h... yes checking for inline... inline checking for size_t... (cached) yes checking for C/C++ restrict keyword... __restrict__ checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint64_t... yes checking for uint8_t... yes checking for inline... (cached) inline checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... yes checking for GNU libc compatible realloc... yes checking for memset... yes checking for mkdir... yes checking for sqrt... yes checking for strchr... yes checking for strdup... yes checking for strerror... yes checking for strncasecmp... yes checking for getopt_long... yes checking for getline... yes checking whether g++ supports C++14 features with -std=gnu++14... yes checking for pthread_create in -lpthread... yes checking for pthread.h... yes checking for xmllint... no checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for libxml-2.0... yes checking for json_object_get in -ljson-c... yes checking for json-c/json_object.h... yes checking for jsonlint... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating doc/Makefile config.status: creating doc/Doxyfile config.status: creating doc/man/freesasa.1 config.status: creating tests/Makefile config.status: creating share/Makefile config.status: creating tests/test-cli config.status: creating config.h config.status: executing depfiles commands debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_build -- freesasa_LDADD='libfreesasa.a ${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2' make -j12 "freesasa_LDADD=libfreesasa.a \${libdir}/libgemmi_cpp.a -lz -ljson-c -lxml2" make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make all-recursive make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making all in src make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o main.o main.cc g++ -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o cif.o cif.cc gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier.o classifier.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_protor.o classifier_protor.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_oons.o classifier_oons.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o classifier_naccess.o classifier_naccess.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o coord.o coord.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o pdb.o pdb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o log.o log.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_lr.o sasa_lr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o sasa_sr.o sasa_sr.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o structure.o structure.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o node.o node.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o freesasa.o freesasa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o nb.o nb.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o util.o util.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o rsa.o rsa.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o selection.o selection.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o lexer.o lexer.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o parser.o parser.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o json.o json.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o xml.o xml.c gcc -DHAVE_CONFIG_H -I. -I.. -I../third-party/gemmi/include/ -Wdate-time -D_FORTIFY_SOURCE=2 -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -c -o example.o example.c rm -f libfreesasa.a ar cr libfreesasa.a classifier.o classifier_protor.o classifier_oons.o classifier_naccess.o coord.o pdb.o log.o sasa_lr.o sasa_sr.o structure.o node.o freesasa.o nb.o util.o rsa.o selection.o lexer.o parser.o json.o xml.o ranlib libfreesasa.a gcc -I/usr/include/libxml2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -fPIC -Wl,-z,relro -Wl,-z,now -o example example.o libfreesasa.a -ljson-c -lxml2 -lpthread -ldl -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/freesasa-2.1.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o freesasa main.o cif.o libfreesasa.a /usr/lib/aarch64-linux-gnu/libgemmi_cpp.a -lz -ljson-c -lxml2 -lpthread -ldl -lm make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making all in doc make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making all in tests make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making all in share make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making check in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making check in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making check in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make check-TESTS make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[4]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' PASS: test-cli ============================================================================ Testsuite summary for FreeSASA 2.1.2 ============================================================================ # TOTAL: 1 # PASS: 1 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making check in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/freesasa/ make -j12 install DESTDIR=/build/reproducible-path/freesasa-2.1.2/debian/freesasa AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/freesasa-2.1.2' Making install in src make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 freesasa.h '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' ( cd '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' && ranlib libfreesasa.a ) /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making install in doc make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/doc' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' /usr/bin/install -c -m 644 man/freesasa.1 '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/doc' Making install in tests make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/tests' Making install in share make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/share' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' /usr/bin/install -c -m 644 dssp.config naccess.config oons.config protor.config '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/share/freesasa' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/share' make[2]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' make[1]: Leaving directory '/build/reproducible-path/freesasa-2.1.2' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-4_arm64.deb'. dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2019515 and its subdirectories I: Current time: Sun May 31 06:35:31 +14 2026 I: pbuilder-time-stamp: 1780158931 + false + set +x Sat May 30 16:35:31 UTC 2026 I: Signing ./b2/freesasa_2.1.2-4_arm64.buildinfo as freesasa_2.1.2-4_arm64.buildinfo.asc Sat May 30 16:35:31 UTC 2026 I: Signed ./b2/freesasa_2.1.2-4_arm64.buildinfo as ./b2/freesasa_2.1.2-4_arm64.buildinfo.asc Sat May 30 16:35:31 UTC 2026 - build #2 for freesasa/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sat May 30 16:35:31 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-fmq5jyYq, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ: total 60 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 10:11 b1 drwxr-xr-x 2 jenkins jenkins 4096 Apr 27 10:12 b2 -rw-r--r-- 1 jenkins jenkins 2028 Aug 9 2023 freesasa_2.1.2-4.dsc -rw------- 1 jenkins jenkins 45782 Apr 27 10:11 rbuildlog.9wW2vE3 /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1: total 1832 -rw-r--r-- 1 jenkins jenkins 42340 Apr 27 10:11 build.log -rw-r--r-- 1 jenkins jenkins 1314224 Apr 27 10:11 freesasa-dbgsym_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3380 Apr 27 10:11 freesasa_2.1.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2028 Apr 27 10:11 freesasa_2.1.2-4.dsc -rw-r--r-- 1 jenkins jenkins 5149 Apr 27 10:11 freesasa_2.1.2-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6031 Apr 27 10:11 freesasa_2.1.2-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Apr 27 10:11 freesasa_2.1.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 473996 Apr 27 10:11 freesasa_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1198 Apr 27 10:11 freesasa_2.1.2-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2: total 1824 -rw-r--r-- 1 jenkins jenkins 44283 Apr 27 10:12 build.log -rw-r--r-- 1 jenkins jenkins 1314224 Apr 27 10:12 freesasa-dbgsym_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 3380 Apr 27 10:12 freesasa_2.1.2-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2028 Apr 27 10:12 freesasa_2.1.2-4.dsc -rw-r--r-- 1 jenkins jenkins 5149 Apr 27 10:12 freesasa_2.1.2-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6031 Apr 27 10:12 freesasa_2.1.2-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Apr 27 10:12 freesasa_2.1.2-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 473996 Apr 27 10:12 freesasa_2.1.2-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1198 Apr 27 10:12 freesasa_2.1.2-4_source.changes Sun Apr 27 10:12:32 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Sun Apr 27 10:12:33 UTC 2025 I: freesasa_2.1.2-4_arm64.changes: Format: 1.8 Date: Wed, 09 Aug 2023 06:56:52 -0400 Source: freesasa Binary: freesasa freesasa-dbgsym Architecture: arm64 Version: 2.1.2-4 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Andrius Merkys Description: freesasa - Solvent Accessible Surface Area of biomolecules Changes: freesasa (2.1.2-4) unstable; urgency=medium . * Locate libgemmi_cpp.a using ${libdir} to fix build on i386. Checksums-Sha1: 5f8730552b876935532c3fea3f3b3b75f3fc4dde 1314224 freesasa-dbgsym_2.1.2-4_arm64.deb 2bfb7719223000392c8f5eff61a1ec3f0e92c844 5149 freesasa_2.1.2-4_arm64.buildinfo 1a0cb0dbc955d0227d3caa6c6493148347e7da20 473996 freesasa_2.1.2-4_arm64.deb Checksums-Sha256: 3e50b3ac89199fd5aed4b987991bdf424db9b8ad4899ea2f709a354a299f97e8 1314224 freesasa-dbgsym_2.1.2-4_arm64.deb e2a33bac529bb8319fe0c4649142a948592a3806fbb08e674092687a65a66f5b 5149 freesasa_2.1.2-4_arm64.buildinfo bc89ee271f9af310d95296b00cb4bc4c46c725716bcc6274c48a6178bd5c1453 473996 freesasa_2.1.2-4_arm64.deb Files: c775e4f39769be5bfe2acf9f2b9eabbf 1314224 debug optional freesasa-dbgsym_2.1.2-4_arm64.deb f70fc3fc93bc26638485b8266d71dfe9 5149 science optional freesasa_2.1.2-4_arm64.buildinfo 5b92bee10b05fcf558c4c15dd2954ff0 473996 science optional freesasa_2.1.2-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/freesasa_2.1.2-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/freesasa_2.1.2-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/freesasa_2.1.2-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/freesasa_2.1.2-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/freesasa_2.1.2-4_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/freesasa_2.1.2-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-04-27 10:11:11.651640232 +0000 +++ b2/build.log 2025-04-27 10:12:32.085930117 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sat Apr 26 22:09:04 -12 2025 -I: pbuilder-time-stamp: 1745748544 +I: Current time: Sun May 31 06:34:14 +14 2026 +I: pbuilder-time-stamp: 1780158854 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix-manpage.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 May 30 16:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='04a784b096f94a5182ed27cca3cc2db3' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2430395' - PS1='# ' - PS2='> ' + INVOCATION_ID=ad8b413dcc8540a481b5585f7343400d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2019515 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_sqnB --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1 --logfile b1/build.log freesasa_2.1.2-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/pbuilderrc_Olwj --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2 --logfile b2/build.log freesasa_2.1.2-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-33-cloud-arm64 #1 SMP Debian 6.1.133-1 (2025-04-10) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Mar 4 11:20 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2430395/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Mar 4 2025 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -157,7 +189,7 @@ Get: 37 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 13.9 MB in 0s (56.7 MB/s) +Fetched 13.9 MB in 0s (86.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19954 files and directories currently installed.) @@ -328,7 +360,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/freesasa-2.1.2/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../freesasa_2.1.2-4_source.changes dpkg-buildpackage: info: source package freesasa dpkg-buildpackage: info: source version 2.1.2-4 dpkg-buildpackage: info: source distribution unstable @@ -564,11 +600,11 @@ make[3]: Entering directory '/build/reproducible-path/freesasa-2.1.2/src' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' - /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/mkdir -p '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' - /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' + /usr/bin/install -c -m 644 libfreesasa.a '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' /usr/bin/install -c -m 644 freesasa.h '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/include' ( cd '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/lib/aarch64-linux-gnu' && ranlib libfreesasa.a ) + /usr/bin/install -c freesasa '/build/reproducible-path/freesasa-2.1.2/debian/freesasa/usr/bin' make[3]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' make[2]: Leaving directory '/build/reproducible-path/freesasa-2.1.2/src' Making install in doc @@ -623,8 +659,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_arm64.deb'. dpkg-deb: building package 'freesasa' in '../freesasa_2.1.2-4_arm64.deb'. +dpkg-deb: building package 'freesasa-dbgsym' in '../freesasa-dbgsym_2.1.2-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../freesasa_2.1.2-4_arm64.buildinfo dpkg-genchanges --build=binary -O../freesasa_2.1.2-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -632,12 +668,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2019515/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2430395 and its subdirectories -I: Current time: Sat Apr 26 22:11:10 -12 2025 -I: pbuilder-time-stamp: 1745748670 +I: removing directory /srv/workspace/pbuilder/2019515 and its subdirectories +I: Current time: Sun May 31 06:35:31 +14 2026 +I: pbuilder-time-stamp: 1780158931 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/freesasa_2.1.2-4.diff: 69.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/freesasa_2.1.2-4.diff.gz b2/build.log: 81.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.7% -- replaced with stdout Sun Apr 27 10:12:34 UTC 2025 I: diffoscope 294 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_freesasa_trixie_arm64_1745748754 + touch /var/log/reproducible-builds/diffoscope_stamp_freesasa_trixie_arm64_1745748754 + RESULT=0 + systemd-run '--description=diffoscope on freesasa/2.1.2-4 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_12-92822 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ --run-session -c jenkins-reproducible-trixie-diffoscope-831e917e-a7a4-4398-beed-440072d0704d -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/dbd-tmp-PbubTjC ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1/freesasa_2.1.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2/freesasa_2.1.2-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_12-92822.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/freesasa_2.1.2-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b1/freesasa_2.1.2-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.ygYCRPVQ/b2/freesasa_2.1.2-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 216ms CPU time consumed: 216ms __ / _|_ __ ___ ___ ___ __ _ ___ __ _ | |_| '__/ _ \/ _ \/ __|/ _` / __|/ _` | | _| | | __/ __/\__ \ (_| \__ \ (_| | |_| |_| \___|\___||___/\__,_|___/\__,_| Sun Apr 27 10:12:34 UTC 2025 I: diffoscope 294 found no differences in the changes files, and a .buildinfo file also exists. Sun Apr 27 10:12:34 UTC 2025 I: freesasa from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-04-27 10:12:35] INFO: Starting at 2025-04-27 10:12:35.211467 [2025-04-27 10:12:35] INFO: Generating the pages of 1 package(s) [2025-04-27 10:12:35] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/freesasa didn't produce a buildlog, even though it has been built. [2025-04-27 10:12:35] INFO: Finished at 2025-04-27 10:12:35.508726, took: 0:00:00.297265 Sun Apr 27 10:12:35 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/freesasa.html Sun Apr 27 10:12:35 UTC 2025 I: Submitting .buildinfo files to external archives: Sun Apr 27 10:12:35 UTC 2025 I: Submitting 8.0K b1/freesasa_2.1.2-4_arm64.buildinfo.asc https://buildinfo.debian.net/2bfb7719223000392c8f5eff61a1ec3f0e92c844/freesasa_2.1.2-4_arm64 Sun Apr 27 10:12:36 UTC 2025 I: Submitting 8.0K b2/freesasa_2.1.2-4_arm64.buildinfo.asc https://buildinfo.debian.net/3411b03a4d332626a896eb94a208547b259a884b/freesasa_2.1.2-4_arm64 Sun Apr 27 10:12:37 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Apr 27 10:12:37 UTC 2025 I: Done submitting .buildinfo files. Sun Apr 27 10:12:37 UTC 2025 I: Removing signed freesasa_2.1.2-4_arm64.buildinfo.asc files: removed './b1/freesasa_2.1.2-4_arm64.buildinfo.asc' removed './b2/freesasa_2.1.2-4_arm64.buildinfo.asc' 1745748757 arm64 trixie freesasa Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/freesasa_2.1.2-4.rbuild.log: 78.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/freesasa_2.1.2-4.rbuild.log.gz [2025-04-27 10:12:37] INFO: Starting at 2025-04-27 10:12:37.831667 [2025-04-27 10:12:37] INFO: Generating the pages of 1 package(s) [2025-04-27 10:12:38] INFO: Finished at 2025-04-27 10:12:38.109544, took: 0:00:00.277883 All cleanup done. Sun Apr 27 10:12:38 UTC 2025 - total duration: 0h 3m 35s. Sun Apr 27 10:12:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-5VxRUfWt, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 38.853s CPU time consumed: 6.699s