Running as unit: rb-build-arm64_16-37960.service ==================================================================================== Sun Nov 24 08:08:53 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_16) on jenkins, called using "codethink02-arm64 codethink01-arm64" as arguments. Sun Nov 24 08:08:53 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-tTHf2PAa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 08:08:53 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Nov 24 08:08:53 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-YjzRzY' Sun Nov 24 08:08:54 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Sun Nov 24 08:08:54 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-TMyXWu' ok, let's check if bppsuite is building anywhere yet… ok, bppsuite is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of bppsuite in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Sun Nov 24 08:09:01 UTC 2024 I: starting to build bppsuite/unstable/arm64 on jenkins on '2024-11-24 08:08' Sun Nov 24 08:09:01 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_16/37960/console.log 1732435741 arm64 unstable bppsuite Sun Nov 24 08:09:01 UTC 2024 I: Downloading source for unstable/bppsuite=2.4.1-7 --2024-11-24 08:09:01-- http://deb.debian.org/debian/pool/main/b/bppsuite/bppsuite_2.4.1-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2186 (2.1K) [text/prs.lines.tag] Saving to: ‘bppsuite_2.4.1-7.dsc’ 0K .. 100% 297M=0s 2024-11-24 08:09:01 (297 MB/s) - ‘bppsuite_2.4.1-7.dsc’ saved [2186/2186] --2024-11-24 08:09:01-- http://deb.debian.org/debian/pool/main/b/bppsuite/bppsuite_2.4.1-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2186 (2.1K) [text/prs.lines.tag] Saving to: ‘bppsuite_2.4.1-7.dsc’ 0K .. 100% 297M=0s 2024-11-24 08:09:01 (297 MB/s) - ‘bppsuite_2.4.1-7.dsc’ saved [2186/2186] Sun Nov 24 08:09:01 UTC 2024 I: bppsuite_2.4.1-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: bppsuite Binary: bppsuite, bppsuite-examples Architecture: any all Version: 2.4.1-7 Maintainer: Debian Med Packaging Team Uploaders: Julien Dutheil , Andreas Tille , Pranav Ballaney Homepage: http://biopp.univ-montp2.fr/wiki/index.php/Main_Page Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/bppsuite Vcs-Git: https://salsa.debian.org/med-team/bppsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev, libbpp-popgen-dev, libeigen3-dev Package-List: bppsuite deb science optional arch=any bppsuite-examples deb science optional arch=all Checksums-Sha1: 7ca13e39f3db596709d5eac1abee2f18c5147966 214404 bppsuite_2.4.1.orig.tar.gz 4bd356e30aef34519aaeff7b006c36bc136989d0 69720 bppsuite_2.4.1-7.debian.tar.xz Checksums-Sha256: 0485adcc17e37439069d27e4fac144e5ae38036ba21f31e6d21f070ce4ea5199 214404 bppsuite_2.4.1.orig.tar.gz 14858b0ca40e6bbcac5783affc8c5fac2cc2ccc1dc963332862955b2d492795d 69720 bppsuite_2.4.1-7.debian.tar.xz Files: d254ffd9e121b408aed36f49e62920d1 214404 bppsuite_2.4.1.orig.tar.gz 44a3af480a15b8e93053ed3c34b51b82 69720 bppsuite_2.4.1-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmYButQACgkQPCZ2P2xn 5uJkeRAAp+d9lpoDCUCQTV1yMNvgMkuNSJZ9QG3jVMhWLbUaCkUrfntrJmn3aUpV qQMLFB+wype9gbxEQUi49VcCZl+0CbOSVQ5lB1sXAQ60zlrbXWrjooSQsbntpjWJ mYX+llGYJpiyXqXTVo4adAmC65SkyWFcN2y2Kudpu6oRJGEWThv+3cGB2r+UBsY9 CfwbhV65GftsAPDSQIFUExY84eVDea/smKZrN/iPJhbjIZTDGkhC0+sebfNgy6nu dG0Iml8szwPU0YqSrEZvrz5I9Exq9mgqu9omp9D+3cJ41UpRwssBgqmRjJegha1r 029CNfCSh2UaN3Iov5OpolaV6WoSj6qWBpAqceRca8KqCuIUYTTjpHBjvQzkirdW apui/NCuTKUUEOJDucV3o3rlyfs15FqqMKevizVwWjVqNMVKD64z4XUFsIDbRwv9 G1H7rjVhrTp1fYD7tzb/mYgI9W4E/AgKygZBXbPl4uEJIkBWUxMvgnzuM99BnR1t LM3AzGO/XTqEHtcbgnZ1iWzO0oVMrFPi+4HQbcVK0IASMpM/JZqyDPgXuKfX8Gwl sOFJgFP3tFV9x97VIKExdMpyLR6bEdtSgsBTVd4lG53TLYN/x8tSITL6h6uEG2gk ETRnrmESsKSEEsMmtN8jtrGII6ChMGv2jtAecANV10DolDYrCNs= =1FZU -----END PGP SIGNATURE----- Sun Nov 24 08:09:01 UTC 2024 I: Checking whether the package is not for us Sun Nov 24 08:09:01 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Sun Nov 24 08:09:01 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Sun Nov 24 08:09:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Sun Nov 24 08:09:01 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Xzb1EW' ==================================================================================== Sun Nov 24 08:09:03 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 bppsuite unstable /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O 2.4.1-7" as arguments. Sun Nov 24 08:09:03 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-WgarxOf5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Nov 24 08:09:03 UTC 2024 I: Downloading source for unstable/bppsuite=2.4.1-7 Reading package lists... NOTICE: 'bppsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bppsuite.git Please use: git clone https://salsa.debian.org/med-team/bppsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 286 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (dsc) [2186 B] Get:2 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (tar) [214 kB] Get:3 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (diff) [69.7 kB] Fetched 286 kB in 0s (2567 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'bppsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bppsuite.git Please use: git clone https://salsa.debian.org/med-team/bppsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 286 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (dsc) [2186 B] Get:2 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (tar) [214 kB] Get:3 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (diff) [69.7 kB] Fetched 286 kB in 0s (2567 kB/s) Download complete and in download only mode ============================================================================= Building bppsuite in unstable on arm64 on codethink02-arm64 now. Date: Sun Nov 24 08:09:03 GMT 2024 Date UTC: Sun Nov 24 08:09:03 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 23 20:09:03 -12 2024 I: pbuilder-time-stamp: 1732435743 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bppsuite_2.4.1-7.dsc] I: copying [./bppsuite_2.4.1.orig.tar.gz] I: copying [./bppsuite_2.4.1-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:56:36 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bppsuite_2.4.1-7.dsc: no acceptable signature found dpkg-source: info: extracting bppsuite in bppsuite-2.4.1 dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='771929' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_jCKH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1 --logfile b1/build.log bppsuite_2.4.1-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev, libbpp-popgen-dev, libeigen3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-popgen-dev; however: Package libbpp-popgen-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-popgen-dev{a} libbpp-popgen8t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 46.5 MB of archives. After unpacking 238 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.1-1 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.1-1 [9873 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libbpp-core4t64 arm64 2.4.1-13+b1 [549 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbpp-core-dev arm64 2.4.1-13+b1 [941 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbpp-seq12t64 arm64 2.4.1-13 [452 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl12t64 arm64 2.4.1-11+b1 [1498 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbpp-seq-dev arm64 2.4.1-13 [724 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl-dev arm64 2.4.1-11+b1 [3000 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen8t64 arm64 2.4.1-11+b1 [214 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen-dev arm64 2.4.1-11+b1 [298 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 texinfo-lib arm64 7.1.1-1+b1 [220 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 texinfo all 7.1.1-1 [1753 kB] Fetched 46.5 MB in 0s (107 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. 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Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../23-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../24-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../25-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../26-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... 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Preparing to unpack .../50-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../51-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../52-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../53-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libbpp-core4t64:arm64. Preparing to unpack .../54-libbpp-core4t64_2.4.1-13+b1_arm64.deb ... Unpacking libbpp-core4t64:arm64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-core-dev:arm64. Preparing to unpack .../55-libbpp-core-dev_2.4.1-13+b1_arm64.deb ... Unpacking libbpp-core-dev:arm64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-seq12t64:arm64. Preparing to unpack .../56-libbpp-seq12t64_2.4.1-13_arm64.deb ... Unpacking libbpp-seq12t64:arm64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl12t64:arm64. Preparing to unpack .../57-libbpp-phyl12t64_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-phyl12t64:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-seq-dev:arm64. Preparing to unpack .../58-libbpp-seq-dev_2.4.1-13_arm64.deb ... Unpacking libbpp-seq-dev:arm64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl-dev:arm64. Preparing to unpack .../59-libbpp-phyl-dev_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-phyl-dev:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-popgen8t64:arm64. Preparing to unpack .../60-libbpp-popgen8t64_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-popgen8t64:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-popgen-dev:arm64. Preparing to unpack .../61-libbpp-popgen-dev_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-popgen-dev:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../62-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../63-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../64-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package pkg-config:arm64. Preparing to unpack .../65-pkg-config_1.8.1-4_arm64.deb ... Unpacking pkg-config:arm64 (1.8.1-4) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../66-libeigen3-dev_3.4.0-4_all.deb ... Unpacking libeigen3-dev (3.4.0-4) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../67-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../68-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../69-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../70-libxml-sax-perl_1.02+dfsg-4_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-4) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../71-libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1_arm64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... Selecting previously unselected package tex-common. Preparing to unpack .../72-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package texinfo-lib. Preparing to unpack .../73-texinfo-lib_7.1.1-1+b1_arm64.deb ... Unpacking texinfo-lib (7.1.1-1+b1) ... Selecting previously unselected package texinfo. Preparing to unpack .../74-texinfo_7.1.1-1_all.deb ... Unpacking texinfo (7.1.1-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libbpp-core4t64:arm64 (2.4.1-13+b1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up texinfo-lib (7.1.1-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up libbpp-core-dev:arm64 (2.4.1-13+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up cmake-data (3.31.1-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbpp-seq12t64:arm64 (2.4.1-13) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libbpp-seq-dev:arm64 (2.4.1-13) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libbpp-phyl12t64:arm64 (2.4.1-11+b1) ... Setting up libbpp-popgen8t64:arm64 (2.4.1-11+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:arm64 (2.4.1-11+b1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libbpp-popgen-dev:arm64 (2.4.1-11+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.31.1-1) ... Setting up debhelper (13.20) ... Setting up texinfo (7.1.1-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:7 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 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/build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f 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CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -MF CMakeFiles/bppconsense.dir/bppConsense.cpp.o.d -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppConsense.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite 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bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake "--color=" [ 13%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: 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object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp [ 34%] Linking CXX executable bppalnscore cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. 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make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 84%] Built target bppreroot [ 86%] Linking CXX executable bppmixedlikelihoods cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 86%] Built target bppmixedlikelihoods [ 89%] Linking CXX executable bppseqgen cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 89%] Built target bppseqgen [ 92%] Linking CXX executable bppancestor cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 [ 94%] Linking CXX executable bppdist cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 94%] Built target bppancestor /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 97%] Linking CXX executable bppml cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 [ 97%] Built target bppdist /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 97%] Built target bppml [100%] Linking CXX executable bpppopstats cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppopstats.dir/link.d CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [100%] Built target bpppopstats make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppml -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqgen -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppdist -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppars -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqman -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppconsense -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppancestor -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppreroot -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpptreedraw -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppalnscore -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppopstats -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1' find debian -name "*.dnd" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_arm64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/771929 and its subdirectories I: Current time: Sat Nov 23 20:10:01 -12 2024 I: pbuilder-time-stamp: 1732435801 Sun Nov 24 08:10:01 UTC 2024 I: Signing ./b1/bppsuite_2.4.1-7_arm64.buildinfo as bppsuite_2.4.1-7_arm64.buildinfo.asc Sun Nov 24 08:10:01 UTC 2024 I: Signed ./b1/bppsuite_2.4.1-7_arm64.buildinfo as ./b1/bppsuite_2.4.1-7_arm64.buildinfo.asc Sun Nov 24 08:10:01 UTC 2024 - build #1 for bppsuite/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Sun Nov 24 08:10:01 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-WgarxOf5, removing. /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 08:10 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 08:09 b2 -rw-r--r-- 1 jenkins jenkins 2186 Mar 26 2024 bppsuite_2.4.1-7.dsc -rw------- 1 jenkins jenkins 3303 Nov 24 08:09 rbuildlog.YViOaMb /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1: total 6872 -rw-r--r-- 1 jenkins jenkins 6261060 Nov 24 08:10 bppsuite-dbgsym_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 227292 Nov 24 08:10 bppsuite-examples_2.4.1-7_all.deb -rw-r--r-- 1 jenkins jenkins 69720 Nov 24 08:10 bppsuite_2.4.1-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2186 Nov 24 08:10 bppsuite_2.4.1-7.dsc -rw-r--r-- 1 jenkins jenkins 6913 Nov 24 08:10 bppsuite_2.4.1-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7795 Nov 24 08:10 bppsuite_2.4.1-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1860 Nov 24 08:10 bppsuite_2.4.1-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 363604 Nov 24 08:10 bppsuite_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1386 Nov 24 08:10 bppsuite_2.4.1-7_source.changes -rw-r--r-- 1 jenkins jenkins 76817 Nov 24 08:10 build.log /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2: total 0 Sun Nov 24 08:10:02 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 23 20:09:03 -12 2024 I: pbuilder-time-stamp: 1732435743 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bppsuite_2.4.1-7.dsc] I: copying [./bppsuite_2.4.1.orig.tar.gz] I: copying [./bppsuite_2.4.1-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:56:36 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bppsuite_2.4.1-7.dsc: no acceptable signature found dpkg-source: info: extracting bppsuite in bppsuite-2.4.1 dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='771929' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_jCKH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1 --logfile b1/build.log bppsuite_2.4.1-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/sbin/chroot' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev, libbpp-popgen-dev, libeigen3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-popgen-dev; however: Package libbpp-popgen-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-popgen-dev{a} libbpp-popgen8t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 46.5 MB of archives. After unpacking 238 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.1-1 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.1-1 [9873 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libbpp-core4t64 arm64 2.4.1-13+b1 [549 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbpp-core-dev arm64 2.4.1-13+b1 [941 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbpp-seq12t64 arm64 2.4.1-13 [452 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl12t64 arm64 2.4.1-11+b1 [1498 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbpp-seq-dev arm64 2.4.1-13 [724 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl-dev arm64 2.4.1-11+b1 [3000 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen8t64 arm64 2.4.1-11+b1 [214 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen-dev arm64 2.4.1-11+b1 [298 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 texinfo-lib arm64 7.1.1-1+b1 [220 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 texinfo all 7.1.1-1 [1753 kB] Fetched 46.5 MB in 0s (107 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_3.31.1-1_all.deb ... Unpacking cmake-data (3.31.1-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../19-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../20-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../21-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../22-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../23-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../24-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../25-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../26-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../27-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../28-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../29-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../30-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../31-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../32-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../33-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../34-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../35-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../36-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../37-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../38-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../39-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../40-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../41-cmake_3.31.1-1_arm64.deb ... Unpacking cmake (3.31.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../42-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../43-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../44-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../45-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../46-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../47-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../48-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../49-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../50-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../51-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../52-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../53-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libbpp-core4t64:arm64. Preparing to unpack .../54-libbpp-core4t64_2.4.1-13+b1_arm64.deb ... Unpacking libbpp-core4t64:arm64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-core-dev:arm64. Preparing to unpack .../55-libbpp-core-dev_2.4.1-13+b1_arm64.deb ... Unpacking libbpp-core-dev:arm64 (2.4.1-13+b1) ... Selecting previously unselected package libbpp-seq12t64:arm64. Preparing to unpack .../56-libbpp-seq12t64_2.4.1-13_arm64.deb ... Unpacking libbpp-seq12t64:arm64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl12t64:arm64. Preparing to unpack .../57-libbpp-phyl12t64_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-phyl12t64:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-seq-dev:arm64. Preparing to unpack .../58-libbpp-seq-dev_2.4.1-13_arm64.deb ... Unpacking libbpp-seq-dev:arm64 (2.4.1-13) ... Selecting previously unselected package libbpp-phyl-dev:arm64. Preparing to unpack .../59-libbpp-phyl-dev_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-phyl-dev:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-popgen8t64:arm64. Preparing to unpack .../60-libbpp-popgen8t64_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-popgen8t64:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libbpp-popgen-dev:arm64. Preparing to unpack .../61-libbpp-popgen-dev_2.4.1-11+b1_arm64.deb ... Unpacking libbpp-popgen-dev:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../62-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../63-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../64-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package pkg-config:arm64. Preparing to unpack .../65-pkg-config_1.8.1-4_arm64.deb ... Unpacking pkg-config:arm64 (1.8.1-4) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../66-libeigen3-dev_3.4.0-4_all.deb ... Unpacking libeigen3-dev (3.4.0-4) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../67-libtext-unidecode-perl_1.30-3_all.deb ... Unpacking libtext-unidecode-perl (1.30-3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../68-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../69-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../70-libxml-sax-perl_1.02+dfsg-4_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-4) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../71-libxml-libxml-perl_2.0207+dfsg+really+2.0134-5+b1_arm64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... Selecting previously unselected package tex-common. Preparing to unpack .../72-tex-common_6.18_all.deb ... Unpacking tex-common (6.18) ... Selecting previously unselected package texinfo-lib. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:7 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite 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/build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/depend [ 2%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o [ 5%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -MF CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend [ 7%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o [ 10%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -MF CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o.d -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -MF CMakeFiles/bppconsense.dir/bppConsense.cpp.o.d -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppConsense.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite 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bppSuite/CMakeFiles/bpppopstats.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake "--color=" [ 13%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: 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object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp [ 34%] Linking CXX executable bppalnscore cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. 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'/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 42%] Compressing manpage bppalnscore.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppalnscore.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppalnscore.1.gz [ 44%] Compressing manpage bppancestor.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppancestor.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppancestor.1.gz [ 47%] Compressing manpage bppconsense.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppconsense.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppconsense.1.gz [ 50%] Compressing manpage bppdist.1 cd 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/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bppseqman.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bppseqman.1.gz [ 71%] Compressing manpage bpptreedraw.1 cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man && /usr/bin/gzip -c -n -9 /build/reproducible-path/bppsuite-2.4.1/man/bpptreedraw.1 > /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/man/bpptreedraw.1.gz make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 71%] Built target man [ 73%] Linking CXX executable bppconsense cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppconsense.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppconsense.dir/link.d CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 73%] Built target bppconsense [ 76%] Linking CXX executable bpppars cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppars.dir/link.d CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 76%] Built target bpppars [ 78%] Linking CXX executable bppseqman cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqman.dir/link.d CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 78%] Built target bppseqman [ 81%] Linking CXX executable bpptreedraw cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 [ 84%] Linking CXX executable bppreroot cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpptreedraw.dir/link.d CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 84%] Built target bpptreedraw /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppreroot.dir/link.d CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 84%] Built target bppreroot [ 86%] Linking CXX executable bppmixedlikelihoods cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 86%] Built target bppmixedlikelihoods [ 89%] Linking CXX executable bppseqgen cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 89%] Built target bppseqgen [ 92%] Linking CXX executable bppancestor cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 [ 94%] Linking CXX executable bppdist cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 94%] Built target bppancestor /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 97%] Linking CXX executable bppml cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 [ 97%] Built target bppdist /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 97%] Built target bppml [100%] Linking CXX executable bpppopstats cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppopstats.dir/link.d CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [100%] Built target bpppopstats make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppml -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqgen -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppdist -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppars -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqman -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppconsense -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppancestor -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppreroot -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpptreedraw -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppalnscore -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppopstats -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1' find debian -name "*.dnd" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_arm64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/771929 and its subdirectories I: Current time: Sat Nov 23 20:10:01 -12 2024 I: pbuilder-time-stamp: 1732435801 Sun Nov 24 08:10:03 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Sun Nov 24 08:10:03 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Sun Nov 24 08:10:03 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Sun Nov 24 08:10:03 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-FMB7xE' ==================================================================================== Sat Dec 27 14:33:03 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 bppsuite unstable /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O 2.4.1-7" as arguments. Sat Dec 27 14:33:03 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-6whBByhZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Dec 27 14:33:04 UTC 2025 I: Downloading source for unstable/bppsuite=2.4.1-7 Reading package lists... NOTICE: 'bppsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bppsuite.git Please use: git clone https://salsa.debian.org/med-team/bppsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 286 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (dsc) [2186 B] Get:2 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (tar) [214 kB] Get:3 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (diff) [69.7 kB] Fetched 286 kB in 0s (20.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'bppsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/bppsuite.git Please use: git clone https://salsa.debian.org/med-team/bppsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 286 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (dsc) [2186 B] Get:2 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (tar) [214 kB] Get:3 http://deb.debian.org/debian unstable/main bppsuite 2.4.1-7 (diff) [69.7 kB] Fetched 286 kB in 0s (20.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building bppsuite in unstable on arm64 on codethink01-arm64 now. Date: Sat Dec 27 14:33:04 GMT 2025 Date UTC: Sat Dec 27 14:33:04 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_J2a5 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' bppsuite = debian-installer -o bppsuite = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' bppsuite = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_J2a5 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2 --logfile b2/build.log bppsuite_2.4.1-7.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 04:33:04 +14 2025 I: pbuilder-time-stamp: 1766845984 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [bppsuite_2.4.1-7.dsc] I: copying [./bppsuite_2.4.1.orig.tar.gz] I: copying [./bppsuite_2.4.1-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Mar 25 17:56:36 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./bppsuite_2.4.1-7.dsc: no acceptable signature found dpkg-source: info: extracting bppsuite in bppsuite-2.4.1 dpkg-source: info: unpacking bppsuite_2.4.1.orig.tar.gz dpkg-source: info: unpacking bppsuite_2.4.1-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spelling dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 27 14:33 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0b7693312a154092931be6210d8ca691 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=359610 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_J2a5 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2 --logfile b2/build.log bppsuite_2.4.1-7.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), cmake, texinfo, libbpp-phyl-dev, libbpp-popgen-dev, libeigen3-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on texinfo; however: Package texinfo is not installed. pbuilder-satisfydepends-dummy depends on libbpp-phyl-dev; however: Package libbpp-phyl-dev is not installed. pbuilder-satisfydepends-dummy depends on libbpp-popgen-dev; however: Package libbpp-popgen-dev is not installed. pbuilder-satisfydepends-dummy depends on libeigen3-dev; however: Package libeigen3-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbpp-core-dev{a} libbpp-core4t64{a} libbpp-phyl-dev{a} libbpp-phyl12t64{a} libbpp-popgen-dev{a} libbpp-popgen8t64{a} libbpp-seq-dev{a} libbpp-seq12t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libeigen3-dev{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libpipeline1{a} libpkgconf3{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtext-unidecode-perl{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml-libxml-perl{a} libxml-namespacesupport-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml2{a} m4{a} man-db{a} pkg-config{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} procps{a} sensible-utils{a} tex-common{a} texinfo{a} texinfo-lib{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libwww-perl libxml-sax-expat-perl linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 75 newly installed, 0 to remove and 0 not upgraded. Need to get 46.5 MB of archives. After unpacking 238 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.1-1 [2267 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 28 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.1-1 [9873 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 49 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libbpp-core4t64 arm64 2.4.1-13+b1 [549 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libbpp-core-dev arm64 2.4.1-13+b1 [941 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libbpp-seq12t64 arm64 2.4.1-13 [452 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl12t64 arm64 2.4.1-11+b1 [1498 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libbpp-seq-dev arm64 2.4.1-13 [724 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbpp-phyl-dev arm64 2.4.1-11+b1 [3000 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen8t64 arm64 2.4.1-11+b1 [214 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libbpp-popgen-dev arm64 2.4.1-11+b1 [298 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 pkg-config arm64 1.8.1-4 [14.0 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 libeigen3-dev all 3.4.0-4 [1041 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libtext-unidecode-perl all 1.30-3 [101 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 texinfo-lib arm64 7.1.1-1+b1 [220 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 texinfo all 7.1.1-1 [1753 kB] Fetched 46.5 MB in 0s (158 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../12-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. 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Unpacking libbpp-popgen-dev:arm64 (2.4.1-11+b1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../62-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../63-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../64-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package pkg-config:arm64. Preparing to unpack .../65-pkg-config_1.8.1-4_arm64.deb ... Unpacking pkg-config:arm64 (1.8.1-4) ... Selecting previously unselected package libeigen3-dev. Preparing to unpack .../66-libeigen3-dev_3.4.0-4_all.deb ... Unpacking libeigen3-dev (3.4.0-4) ... Selecting previously unselected package libtext-unidecode-perl. Preparing to unpack .../67-libtext-unidecode-perl_1.30-3_all.deb ... 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Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up texinfo-lib (7.1.1-1+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up libbpp-core-dev:arm64 (2.4.1-13+b1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up autotools-dev (20220109.1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up cmake-data (3.31.1-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtext-unidecode-perl (1.30-3) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbpp-seq12t64:arm64 (2.4.1-13) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libbpp-seq-dev:arm64 (2.4.1-13) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libbpp-phyl12t64:arm64 (2.4.1-11+b1) ... Setting up libbpp-popgen8t64:arm64 (2.4.1-11+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libbpp-phyl-dev:arm64 (2.4.1-11+b1) ... Setting up libeigen3-dev (3.4.0-4) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up pkg-config:arm64 (1.8.1-4) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libbpp-popgen-dev:arm64 (2.4.1-11+b1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.31.1-1) ... Setting up debhelper (13.20) ... Setting up texinfo (7.1.1-1) ... Processing triggers for libc-bin (2.40-4) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/359610/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/359610/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu .. CMake Deprecation Warning at CMakeLists.txt:7 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found /usr/bin/gzip compression program, using file extension .gz -- bpp-core 4.1.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-core.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -- includes: /usr/include -- bpp-seq 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 -- includes: /usr/include -- bpp-phyl 12.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 -- includes: /usr/include -- bpp-popgen 8.0.0 found: -- static lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.a -- shared lib: /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu dh_auto_build cd obj-aarch64-linux-gnu && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/CMakeFiles /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build [ 2%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend [ 5%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o -MF CMakeFiles/bpppars.dir/bppPars.cpp.o.d -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPars.cpp [ 7%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" [ 10%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o cd 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CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build [ 13%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o 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'/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 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bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppalnscore.dir/DependInfo.cmake "--color=" cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make bppSuite/CMakeFiles/bpptreedraw.dir/build [ 23%] Building CXX object bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd 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/usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 92%] Built target bppseqgen /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 92%] Built target bppancestor [ 94%] Linking CXX executable bppml cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 94%] Built target bppml [ 97%] Linking CXX executable bppdist cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 97%] Built target bppdist [100%] Linking CXX executable bpppopstats cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppopstats.dir/link.d CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [100%] Built target bpppopstats make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install cd obj-aarch64-linux-gnu && make -j12 install DESTDIR=/build/reproducible-path/bppsuite-2.4.1/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' /usr/bin/cmake -S/build/reproducible-path/bppsuite-2.4.1 -B/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppml -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqgen -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppdist -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppars -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppseqman -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppconsense -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppancestor -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppmixedlikelihoods -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppreroot -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpptreedraw -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bppalnscore -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/bin/bpppopstats -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/info/bppsuite.info.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppalnscore.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppancestor.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppconsense.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppdist.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppmixedlikelihoods.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppml.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppars.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpppopstats.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppreroot.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqgen.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bppseqman.1.gz -- Installing: /build/reproducible-path/bppsuite-2.4.1/debian/tmp/usr/share/man/man1/bpptreedraw.1.gz make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms debian/rules execute_after_dh_fixperms make[1]: Entering directory '/build/reproducible-path/bppsuite-2.4.1' find debian -name "*.dnd" -exec chmod -x \{\} \; make[1]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1' dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_arm64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/359610/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/359610/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/359610 and its subdirectories I: Current time: Sun Dec 28 04:34:30 +14 2025 I: pbuilder-time-stamp: 1766846070 + false + set +x Sat Dec 27 14:34:30 UTC 2025 I: Signing ./b2/bppsuite_2.4.1-7_arm64.buildinfo as bppsuite_2.4.1-7_arm64.buildinfo.asc Sat Dec 27 14:34:30 UTC 2025 I: Signed ./b2/bppsuite_2.4.1-7_arm64.buildinfo as ./b2/bppsuite_2.4.1-7_arm64.buildinfo.asc Sat Dec 27 14:34:30 UTC 2025 - build #2 for bppsuite/unstable/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Sat Dec 27 14:34:30 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-6whBByhZ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O: total 96 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 08:10 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 24 08:11 b2 -rw-r--r-- 1 jenkins jenkins 2186 Mar 26 2024 bppsuite_2.4.1-7.dsc -rw------- 1 jenkins jenkins 80421 Nov 24 08:10 rbuildlog.YViOaMb /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1: total 6900 -rw-r--r-- 1 jenkins jenkins 6261060 Nov 24 08:10 bppsuite-dbgsym_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 227292 Nov 24 08:10 bppsuite-examples_2.4.1-7_all.deb -rw-r--r-- 1 jenkins jenkins 69720 Nov 24 08:10 bppsuite_2.4.1-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2186 Nov 24 08:10 bppsuite_2.4.1-7.dsc -rw-r--r-- 1 jenkins jenkins 6913 Nov 24 08:10 bppsuite_2.4.1-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7795 Nov 24 08:10 bppsuite_2.4.1-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1860 Nov 24 08:10 bppsuite_2.4.1-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 363604 Nov 24 08:10 bppsuite_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1386 Nov 24 08:10 bppsuite_2.4.1-7_source.changes -rw-r--r-- 1 jenkins jenkins 76817 Nov 24 08:10 build.log /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2: total 6876 -rw-r--r-- 1 jenkins jenkins 6261060 Nov 24 08:11 bppsuite-dbgsym_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 227292 Nov 24 08:11 bppsuite-examples_2.4.1-7_all.deb -rw-r--r-- 1 jenkins jenkins 69720 Nov 24 08:11 bppsuite_2.4.1-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2186 Nov 24 08:11 bppsuite_2.4.1-7.dsc -rw-r--r-- 1 jenkins jenkins 6913 Nov 24 08:11 bppsuite_2.4.1-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7795 Nov 24 08:11 bppsuite_2.4.1-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1860 Nov 24 08:11 bppsuite_2.4.1-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 363604 Nov 24 08:11 bppsuite_2.4.1-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1386 Nov 24 08:11 bppsuite_2.4.1-7_source.changes -rw-r--r-- 1 jenkins jenkins 78753 Nov 24 08:11 build.log Sun Nov 24 08:11:32 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Sun Nov 24 08:11:33 UTC 2024 I: bppsuite_2.4.1-7_arm64.changes: Format: 1.8 Date: Mon, 25 Mar 2024 12:53:01 +0100 Source: bppsuite Binary: bppsuite bppsuite-dbgsym bppsuite-examples Architecture: arm64 all Version: 2.4.1-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: bppsuite - Bio++ program suite bppsuite-examples - Examples for Bio++ program suite Changes: bppsuite (2.4.1-7) unstable; urgency=medium . * Team upload. * d/patches/hardening: Added patch to not shadow dpkg-buildflags * d/rules: specifying RelWithDebInfo isn't necessary for getting unstripped binaries. * d/patches/spelling: new patch to fix typos. Checksums-Sha1: fb5bfac9f211088fddce95d3d764018d0aef9246 6261060 bppsuite-dbgsym_2.4.1-7_arm64.deb e3ff2772284efffc6bdda61421d1869324a76c7e 227292 bppsuite-examples_2.4.1-7_all.deb dd960497e0e953c4343a16a03c1c430160191bc2 6913 bppsuite_2.4.1-7_arm64.buildinfo bc52fda26cc3792699f125f30b209ae9cba6e16e 363604 bppsuite_2.4.1-7_arm64.deb Checksums-Sha256: 9ebba3b29b7f8eae875c92051ab61499cdc9ac292e3f7dfd79d819fa310c4ac4 6261060 bppsuite-dbgsym_2.4.1-7_arm64.deb fc16a65da429d14239c13df206193da066262c6ea3f33864d3a573c461781629 227292 bppsuite-examples_2.4.1-7_all.deb 906d030f750eb2672fee11e4558f7f8ce4b17ac73f4269f901c569a29bd062e2 6913 bppsuite_2.4.1-7_arm64.buildinfo bf58fc7d49657c1d3ee1e38b94d113f0c526ef9fc32684a3baecda56ae0b9066 363604 bppsuite_2.4.1-7_arm64.deb Files: 7f0fa7b428c22f479eae9363a5ab990f 6261060 debug optional bppsuite-dbgsym_2.4.1-7_arm64.deb 92d9dc06db629d633bc6533e4bcb3bfe 227292 science optional bppsuite-examples_2.4.1-7_all.deb 24515ba33689116186b9b67fb4dcdbfd 6913 science optional bppsuite_2.4.1-7_arm64.buildinfo 295f04aa165b106f8ca17193d36a782d 363604 science optional bppsuite_2.4.1-7_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/bppsuite_2.4.1-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/bppsuite_2.4.1-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/bppsuite_2.4.1-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/bppsuite_2.4.1-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/bppsuite_2.4.1-7_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/bppsuite_2.4.1-7.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-24 08:10:02.247078745 +0000 +++ b2/build.log 2024-11-24 08:11:32.323003857 +0000 @@ -1,7 +1,6 @@ -W: cgroups are not available on the host, not using them. I: pbuilder: network access will be disabled during build -I: Current time: Sat Nov 23 20:09:03 -12 2024 -I: pbuilder-time-stamp: 1732435743 +I: Current time: Sun Dec 28 04:33:04 +14 2025 +I: pbuilder-time-stamp: 1766845984 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,51 +28,84 @@ dpkg-source: info: applying hardening I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 27 14:33 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='771929' - PS1='# ' - PS2='> ' + INVOCATION_ID=0b7693312a154092931be6210d8ca691 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=359610 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_jCKH --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1 --logfile b1/build.log bppsuite_2.4.1-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/sbin/chroot' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/pbuilderrc_J2a5 --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2 --logfile b2/build.log bppsuite_2.4.1-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/771929/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -194,7 +226,7 @@ Get: 73 http://deb.debian.org/debian unstable/main arm64 tex-common all 6.18 [32.5 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 texinfo-lib arm64 7.1.1-1+b1 [220 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 texinfo all 7.1.1-1 [1753 kB] -Fetched 46.5 MB in 0s (107 MB/s) +Fetched 46.5 MB in 0s (158 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) @@ -519,7 +551,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/bppsuite-2.4.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../bppsuite_2.4.1-7_source.changes dpkg-buildpackage: info: source package bppsuite dpkg-buildpackage: info: source version 2.4.1-7 dpkg-buildpackage: info: source distribution unstable @@ -569,7 +605,7 @@ -- includes: /usr/include -- Found /usr/bin/makeinfo: 'info' and 'html' target enabled (builds info/html doc) -- Found texi2dvi: 'pdf' target enabled (builds pdf doc) --- Configuring done (0.3s) +-- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -588,101 +624,101 @@ make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/depend -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/depend cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppml.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqgen.dir/DependInfo.cmake "--color=" +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppdist.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/depend +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppars.dir/DependInfo.cmake "--color=" +make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build +[ 2%] Building CXX object bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppml.dir/bppML.cpp.o -MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp +make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build +make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppseqman.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/depend -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 5%] Building CXX object bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpppars.dir/bppPars.cpp.o -MF CMakeFiles/bpppars.dir/bppPars.cpp.o.d -o CMakeFiles/bpppars.dir/bppPars.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPars.cpp +[ 7%] Building CXX object bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppconsense.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bppml.dir/build.make bppSuite/CMakeFiles/bppml.dir/build -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 10%] Building CXX object bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -MF CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o.d -o CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqGen.cpp +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -MF CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppdist.dir/build.make bppSuite/CMakeFiles/bppdist.dir/build -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppseqgen.dir/build.make bppSuite/CMakeFiles/bppseqgen.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppmixedlikelihoods.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bppseqman.dir/build.make bppSuite/CMakeFiles/bppseqman.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bppconsense.dir/build.make bppSuite/CMakeFiles/bppconsense.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppars.dir/build.make bppSuite/CMakeFiles/bpppars.dir/build -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/depend +make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build +[ 13%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppancestor.dir/DependInfo.cmake "--color=" -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/depend +make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" 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-MF CMakeFiles/bppml.dir/bppML.cpp.o.d -o CMakeFiles/bppml.dir/bppML.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppML.cpp -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppdist.dir/bppDist.cpp.o -MF CMakeFiles/bppdist.dir/bppDist.cpp.o.d -o CMakeFiles/bppdist.dir/bppDist.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppDist.cpp +[ 15%] Building CXX object bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppconsense.dir/bppConsense.cpp.o -MF CMakeFiles/bppconsense.dir/bppConsense.cpp.o.d -o CMakeFiles/bppconsense.dir/bppConsense.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppConsense.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bppreroot.dir/DependInfo.cmake "--color=" make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make 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bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -MF CMakeFiles/bppancestor.dir/bppAncestor.cpp.o.d -o CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAncestor.cpp +[ 21%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 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-ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -MF CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o.d -o CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppMixedLikelihoods.cpp make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/bppsuite-2.4.1 /build/reproducible-path/bppsuite-2.4.1/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite/CMakeFiles/bpppopstats.dir/DependInfo.cmake "--color=" -[ 13%] Building CXX object bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -MF CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o.d -o CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppSeqMan.cpp make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppancestor.dir/build.make bppSuite/CMakeFiles/bppancestor.dir/build +make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppreroot.dir/build.make bppSuite/CMakeFiles/bppreroot.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build +make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' make -f bppSuite/CMakeFiles/bpptreedraw.dir/build.make 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-make -f bppSuite/CMakeFiles/bppalnscore.dir/build.make bppSuite/CMakeFiles/bppalnscore.dir/build +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -MF CMakeFiles/bppreroot.dir/bppReRoot.cpp.o.d -o CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppReRoot.cpp +make -f bppSuite/CMakeFiles/bpppopstats.dir/build.make bppSuite/CMakeFiles/bpppopstats.dir/build make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -make -f bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build.make bppSuite/CMakeFiles/bppmixedlikelihoods.dir/build [ 26%] Building CXX object bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -[ 28%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -MF CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o.d -o CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppTreeDraw.cpp +[ 28%] Building CXX object bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIE -std=c++11 -Wall -Weffc++ -Wshadow -Wconversion -MD -MT bppSuite/CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -MF CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o.d -o CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppAlnScore.cpp -make[3]: Entering directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 31%] Building CXX object bppSuite/CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat 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CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -c /build/reproducible-path/bppsuite-2.4.1/bppSuite/bppPopStats.cpp [ 34%] Linking CXX executable bppalnscore cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppalnscore.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppalnscore.dir/link.d CMakeFiles/bppalnscore.dir/bppAlnScore.cpp.o -o bppalnscore /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -737,51 +773,51 @@ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppconsense.dir/link.d CMakeFiles/bppconsense.dir/bppConsense.cpp.o -o bppconsense /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 73%] Built target bppconsense -[ 76%] Linking CXX executable bpppars -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppars.dir/link.d CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 76%] Built target bpppars -[ 78%] Linking CXX executable bppseqman +[ 76%] Linking CXX executable bppseqman cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqman.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqman.dir/link.d CMakeFiles/bppseqman.dir/bppSeqMan.cpp.o -o bppseqman /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 78%] Built target bppseqman +[ 76%] Built target bppseqman +[ 78%] Linking CXX executable bpppars +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppars.dir/link.txt --verbose=1 [ 81%] Linking CXX executable bpptreedraw cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpptreedraw.dir/link.txt --verbose=1 -[ 84%] Linking CXX executable bppreroot -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppars.dir/link.d CMakeFiles/bpppars.dir/bppPars.cpp.o -o bpppars /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 81%] Built target bpppars /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpptreedraw.dir/link.d CMakeFiles/bpptreedraw.dir/bppTreeDraw.cpp.o -o bpptreedraw /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 84%] Built target bpptreedraw +[ 81%] Built target bpptreedraw +[ 84%] Linking CXX executable bppreroot +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppreroot.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppreroot.dir/link.d CMakeFiles/bppreroot.dir/bppReRoot.cpp.o -o bppreroot /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' [ 84%] Built target bppreroot [ 86%] Linking CXX executable bppmixedlikelihoods cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppmixedlikelihoods.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 86%] Built target bppmixedlikelihoods [ 89%] Linking CXX executable bppseqgen cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppseqgen.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 -make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 89%] Built target bppseqgen [ 92%] Linking CXX executable bppancestor cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppancestor.dir/link.txt --verbose=1 -[ 94%] Linking CXX executable bppdist -cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppmixedlikelihoods.dir/link.d CMakeFiles/bppmixedlikelihoods.dir/bppMixedLikelihoods.cpp.o -o bppmixedlikelihoods /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 94%] Built target bppancestor -/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +[ 92%] Built target bppmixedlikelihoods +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppseqgen.dir/link.d CMakeFiles/bppseqgen.dir/bppSeqGen.cpp.o -o bppseqgen /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 97%] Linking CXX executable bppml +[ 92%] Built target bppseqgen +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppancestor.dir/link.d CMakeFiles/bppancestor.dir/bppAncestor.cpp.o -o bppancestor /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 92%] Built target bppancestor +[ 94%] Linking CXX executable bppml cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppml.dir/link.txt --verbose=1 -[ 97%] Built target bppdist /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppml.dir/link.d CMakeFiles/bppml.dir/bppML.cpp.o -o bppml /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' -[ 97%] Built target bppml +[ 94%] Built target bppml +[ 97%] Linking CXX executable bppdist +cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bppdist.dir/link.txt --verbose=1 +/usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bppdist.dir/link.d CMakeFiles/bppdist.dir/bppDist.cpp.o -o bppdist /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 +make[3]: Leaving directory '/build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu' +[ 97%] Built target bppdist [100%] Linking CXX executable bpppopstats cd /build/reproducible-path/bppsuite-2.4.1/obj-aarch64-linux-gnu/bppSuite && /usr/bin/cmake -E cmake_link_script CMakeFiles/bpppopstats.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/bppsuite-2.4.1=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file,CMakeFiles/bpppopstats.dir/link.d CMakeFiles/bpppopstats.dir/bppPopStats.cpp.o -o bpppopstats /usr/lib/aarch64-linux-gnu/libbpp-phyl.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-popgen.so.8.0.0 /usr/lib/aarch64-linux-gnu/libbpp-seq.so.12.0.0 /usr/lib/aarch64-linux-gnu/libbpp-core.so.4.1.0 @@ -857,8 +893,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'bppsuite' in '../bppsuite_2.4.1-7_arm64.deb'. -dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_arm64.deb'. dpkg-deb: building package 'bppsuite-examples' in '../bppsuite-examples_2.4.1-7_all.deb'. +dpkg-deb: building package 'bppsuite-dbgsym' in '../bppsuite-dbgsym_2.4.1-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../bppsuite_2.4.1-7_arm64.buildinfo dpkg-genchanges --build=binary -O../bppsuite_2.4.1-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -866,12 +902,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/359610/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/771929 and its subdirectories -I: Current time: Sat Nov 23 20:10:01 -12 2024 -I: pbuilder-time-stamp: 1732435801 +I: removing directory /srv/workspace/pbuilder/359610 and its subdirectories +I: Current time: Sun Dec 28 04:34:30 +14 2025 +I: pbuilder-time-stamp: 1766846070 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/bppsuite_2.4.1-7.diff: 89.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/bppsuite_2.4.1-7.diff.gz b2/build.log: 85.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 86.0% -- replaced with stdout Sun Nov 24 08:11:34 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_bppsuite_unstable_arm64_1732435894 + touch /var/log/reproducible-builds/diffoscope_stamp_bppsuite_unstable_arm64_1732435894 + RESULT=0 + systemd-run '--description=diffoscope on bppsuite/2.4.1-7 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_16-37960 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O --run-session -c jenkins-reproducible-unstable-diffoscope-95b66821-226c-47f3-91d6-cc08c9fd1b89 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/dbd-tmp-EgM9XiY ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1/bppsuite_2.4.1-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2/bppsuite_2.4.1-7_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_16-37960.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/bppsuite_2.4.1-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b1/bppsuite_2.4.1-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.A4Vj3j5O/b2/bppsuite_2.4.1-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.413s) 0.413s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.078s) 0.078s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 776ms CPU time consumed: 776ms _ _ _ | |__ _ __ _ __ ___ _ _(_) |_ ___ | '_ \| '_ \| '_ \/ __| | | | | __/ _ \ | |_) | |_) | |_) \__ \ |_| | | || __/ |_.__/| .__/| .__/|___/\__,_|_|\__\___| |_| |_| Sun Nov 24 08:11:50 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Sun Nov 24 08:11:50 UTC 2024 I: bppsuite from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-24 08:11:50] INFO: Starting at 2024-11-24 08:11:50.885341 [2024-11-24 08:11:50] INFO: Generating the pages of 1 package(s) [2024-11-24 08:11:51] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/bppsuite didn't produce a buildlog, even though it has been built. [2024-11-24 08:11:51] INFO: Finished at 2024-11-24 08:11:51.895661, took: 0:00:01.010327 Sun Nov 24 08:11:51 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/bppsuite.html Sun Nov 24 08:11:51 UTC 2024 I: Submitting .buildinfo files to external archives: Sun Nov 24 08:11:51 UTC 2024 I: Submitting 8.0K b1/bppsuite_2.4.1-7_arm64.buildinfo.asc https://buildinfo.debian.net/dd960497e0e953c4343a16a03c1c430160191bc2/bppsuite_2.4.1-7_all Sun Nov 24 08:11:59 UTC 2024 I: Submitting 8.0K b2/bppsuite_2.4.1-7_arm64.buildinfo.asc https://buildinfo.debian.net/2557e24418b1b2dadb4eeeafb264a2f78dd888c5/bppsuite_2.4.1-7_all Sun Nov 24 08:12:06 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Sun Nov 24 08:12:06 UTC 2024 I: Done submitting .buildinfo files. Sun Nov 24 08:12:06 UTC 2024 I: Removing signed bppsuite_2.4.1-7_arm64.buildinfo.asc files: removed './b1/bppsuite_2.4.1-7_arm64.buildinfo.asc' removed './b2/bppsuite_2.4.1-7_arm64.buildinfo.asc' 1732435926 arm64 unstable bppsuite Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/bppsuite_2.4.1-7.rbuild.log: 83.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/bppsuite_2.4.1-7.rbuild.log.gz [2024-11-24 08:12:07] INFO: Starting at 2024-11-24 08:12:07.253573 [2024-11-24 08:12:07] INFO: Generating the pages of 1 package(s) [2024-11-24 08:12:07] INFO: Finished at 2024-11-24 08:12:07.937217, took: 0:00:00.683653 All cleanup done. Sun Nov 24 08:12:08 UTC 2024 - total duration: 0h 2m 57s. Sun Nov 24 08:12:08 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-tTHf2PAa, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 14.588s CPU time consumed: 8.827s