Running as unit: rb-build-arm64_17-56684.service ==================================================================================== Tue Oct 1 16:02:46 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_17) on jenkins, called using "codethink03-arm64 codethink01-arm64" as arguments. Tue Oct 1 16:02:46 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-RIDA1Jxv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Oct 1 16:02:46 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Oct 1 16:02:46 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-upQEor' Tue Oct 1 16:02:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Tue Oct 1 16:02:47 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Fu3DNg' ok, let's check if pbsuite is building anywhere yet… ok, pbsuite is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of pbsuite in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Tue Oct 1 16:03:09 UTC 2024 I: starting to build pbsuite/unstable/arm64 on jenkins on '2024-10-01 16:02' Tue Oct 1 16:03:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_17/56684/console.log 1727798589 arm64 unstable pbsuite Tue Oct 1 16:03:09 UTC 2024 I: Downloading source for unstable/pbsuite=15.8.24+dfsg-7 --2024-10-01 16:03:10-- http://deb.debian.org/debian/pool/main/p/pbsuite/pbsuite_15.8.24%2bdfsg-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2281 (2.2K) [text/prs.lines.tag] Saving to: ‘pbsuite_15.8.24+dfsg-7.dsc’ 0K .. 100% 171M=0s 2024-10-01 16:03:10 (171 MB/s) - ‘pbsuite_15.8.24+dfsg-7.dsc’ saved [2281/2281] --2024-10-01 16:03:10-- http://deb.debian.org/debian/pool/main/p/pbsuite/pbsuite_15.8.24%2bdfsg-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2281 (2.2K) [text/prs.lines.tag] Saving to: ‘pbsuite_15.8.24+dfsg-7.dsc’ 0K .. 100% 171M=0s 2024-10-01 16:03:10 (171 MB/s) - ‘pbsuite_15.8.24+dfsg-7.dsc’ saved [2281/2281] Tue Oct 1 16:03:10 UTC 2024 I: pbsuite_15.8.24+dfsg-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: pbsuite Binary: pbsuite, python3-pbsuite-utils, pbjelly, pbhoney, python3-pbbanana Architecture: all Version: 15.8.24+dfsg-7 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: http://sourceforge.net/projects/pb-jelly Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/pbsuite Vcs-Git: https://salsa.debian.org/med-team/pbsuite.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), dh-python, python3-all Package-List: pbhoney deb science optional arch=all pbjelly deb science optional arch=all pbsuite deb metapackages optional arch=all python3-pbbanana deb python optional arch=all python3-pbsuite-utils deb python optional arch=all Checksums-Sha1: 83f478b44516f962d98520eba8109da904f84f11 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 07d58cc20fba31059b7e746d970efea746cb2d04 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Checksums-Sha256: f58813e9e3ed9e3f161de8460ed1e1d86be5a817cbeb0e041cc94cbd3e9e3aab 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz 21af1c58b49aa955f7d457eec7600c026537229bac726c06a27851260780910d 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz Files: c6c55284fb59c4dce96fbc9c6d20fda3 1614912 pbsuite_15.8.24+dfsg.orig.tar.xz eda8be478c389236c85c21b9e00c31ba 24488 pbsuite_15.8.24+dfsg-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmAg4tMUHG5wYXRyYTk3 NEBnbWFpbC5jb20ACgkQALrnSzQzafGKcw//cygdY7QMPhjgqgZ/ue6DXrruGi8y W0hzwGvJ9TxjnYKJXLzHx3JLd9449c75W8CpKYdJqCEzKcLbODE7jFUYQ/YIZQoW nednRlEBjC5Yhz81ed6K25qVruGZjRKqmYcVyJP35K+Cc/nQmytQNe/59T/6JrHa GF+6UOdL4KU3A13vXk6IkQLabH5H7Zu7eFnHfODkwoUjBHBFikRIkHG5PGD1hCyk GFP6VpHzUwOdlJBghFc31Ezw05Iw/XipoCbeWLY6yyn8ZP2t0O8VAX13c44eMkzd 7n1dXbotjZGASKxWoCl8ZiDiHohj3kLnL/v0sCwfN+sfknnV+T2wDaAChIuLnWyJ y6x+F6dOyn/lEPZxbyPL6Dvfrx4YdWxvzgImbt9dITE6GT4f1bBsADquXXzheiwI 7UZB823ia0BihnlDIWjzNWEjqtiOOkol9PtInfQubeyF9myeytgn+eD4sDHsmyLk UFJ7162us6JXBGhdvOfmfpYri6+vkGkqSeo0ICjn7hRAgReYl0fwIePS6MaCw2D8 HS+FCo8UgZbRJTzAWCPJhQ9B644QtmBYBw8RmZCCzyhNe35DYdtXlOGNptIOintS F8vKnX8yuQod0ynLC4Y5hF62PHq7mvIPBfNmrDpMrtZDvL9vYLWeRHNKRQQuYHqn WOOzlrz8zVvmgI8= =yuMS -----END PGP SIGNATURE----- Tue Oct 1 16:03:10 UTC 2024 I: Checking whether the package is not for us Tue Oct 1 16:03:10 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Tue Oct 1 16:03:10 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Tue Oct 1 16:03:10 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Oct 1 16:03:10 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-2uDQBB' ==================================================================================== Mon Nov 3 22:26:11 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 pbsuite unstable /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC 15.8.24+dfsg-7" as arguments. Mon Nov 3 22:26:11 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-Gvy50QTc" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 3 22:26:11 UTC 2025 I: Downloading source for unstable/pbsuite=15.8.24+dfsg-7 Reading package lists... NOTICE: 'pbsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbsuite.git Please use: git clone https://salsa.debian.org/med-team/pbsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1642 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (dsc) [2281 B] Get:2 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (tar) [1615 kB] Get:3 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (diff) [24.5 kB] Fetched 1642 kB in 0s (3902 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pbsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbsuite.git Please use: git clone https://salsa.debian.org/med-team/pbsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1642 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (dsc) [2281 B] Get:2 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (tar) [1615 kB] Get:3 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (diff) [24.5 kB] Fetched 1642 kB in 0s (3902 kB/s) Download complete and in download only mode ============================================================================= Building pbsuite in unstable on arm64 on codethink03-arm64 now. Date: Mon Nov 3 22:26:12 GMT 2025 Date UTC: Mon Nov 3 22:26:12 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 3 10:26:12 -12 2025 I: pbuilder-time-stamp: 1762208772 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-7.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 8 07:05:55 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsuite_15.8.24+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e6e4c3a303344f29aec0ed7d46c4e2a7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4153638' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_HF1b --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240824 [109 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Fetched 27.4 MB in 0s (99.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20215 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... 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Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_build python3 -m compileall pbsuite pbsuite/banana/MakeOverlapTable.py:10: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeOverlapTable.py:26: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/MakeReciprocal.py:12: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeReciprocal.py:36: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/OLCAssembly.py:277: SyntaxWarning: invalid escape sequence '\:' _exe("grep iid alignments.overlaps_realigned | cut -f2 -d\: > internal.ids") pbsuite/banana/OLCAssembly.py:304: SyntaxWarning: invalid escape sequence '\d' getContigName = re.compile("(\d+)_contig") pbsuite/banana/chunkyBlasr.py:123: SyntaxWarning: invalid escape sequence '\ ' "awk -F\ '{{if ($1 < 500) print $2}}' | " pbsuite/honey/Force.py:523: SyntaxWarning: invalid escape sequence '\?' forceRe = re.compile("(?PTrue|False|\?)\[(?P.*)\|(?P.*)\]") pbsuite/honey/bampie.py:85: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/honey/bampie.py:166: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P[01])(?P.*):(?P\d+)__(?P.*)$") pbsuite/honey/realign.py:199: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/jelly/Extraction.py:59: SyntaxWarning: invalid escape sequence '\d' getSub = re.compile("(.*)##(\d+)#(\d+)##$") pbsuite/jelly/Extraction.py:326: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/jelly/Setup.py:16: SyntaxWarning: invalid escape sequence '\|' refParser = re.compile("(.*)\|(ref\d{7})/?(\d+)?$") pbsuite/jelly/Stages.py:82: SyntaxWarning: invalid escape sequence '\d' nprocRe = re.compile("--nproc (\d+)") pbsuite/jelly/m4pie.py:17: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/jelly/m4pie.py:108: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P\d+)__(?P.*)$") pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P\w+)\s*=\s*\<\s*ID\s*=\s*(?P\w+)\s*' pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P[0-9.])\s*,' pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P\w+)\s*,)?' pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P.*)"\s*\>\s*'),\ pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}") Listing 'pbsuite'... Compiling 'pbsuite/__init__.py'... Listing 'pbsuite/banana'... Compiling 'pbsuite/banana/Banana.py'... Compiling 'pbsuite/banana/MakeOverlapTable.py'... Compiling 'pbsuite/banana/MakeReciprocal.py'... Compiling 'pbsuite/banana/OLCAssembly.py'... Compiling 'pbsuite/banana/Polish.py'... Compiling 'pbsuite/banana/SeqAsm.py'... Compiling 'pbsuite/banana/__init__.py'... Compiling 'pbsuite/banana/chunkyBlasr.py'... Listing 'pbsuite/honey'... Compiling 'pbsuite/honey/ComplexResolver.py'... Compiling 'pbsuite/honey/Force.py'... Compiling 'pbsuite/honey/HSpots.py'... Compiling 'pbsuite/honey/Honey.py'... Compiling 'pbsuite/honey/SVMachines.py'... Compiling 'pbsuite/honey/TGraf.py'... Compiling 'pbsuite/honey/Valid.py'... Compiling 'pbsuite/honey/__init__.py'... Compiling 'pbsuite/honey/bakH.py'... Compiling 'pbsuite/honey/bampie.py'... Compiling 'pbsuite/honey/massivePhrap.py'... Compiling 'pbsuite/honey/realign.py'... Compiling 'pbsuite/honey/recallSpots.py'... Compiling 'pbsuite/honey/spotH5Merge.py'... Compiling 'pbsuite/honey/spotH5dump.py'... Compiling 'pbsuite/honey/spotToBed.py'... Compiling 'pbsuite/honey/spotToVCF.py'... Listing 'pbsuite/honey/svm'... Listing 'pbsuite/honey/svm/ecoli_jul1.svm'... Listing 'pbsuite/honey/svm/ecoli_jul12.svm'... Listing 'pbsuite/jelly'... Compiling 'pbsuite/jelly/Assembly.py'... Compiling 'pbsuite/jelly/Collection.py'... Compiling 'pbsuite/jelly/Extraction.py'... Compiling 'pbsuite/jelly/GetSubs.py'... Compiling 'pbsuite/jelly/Jelly.py'... Compiling 'pbsuite/jelly/QFix.py'... Compiling 'pbsuite/jelly/Setup.py'... Compiling 'pbsuite/jelly/Stages.py'... Compiling 'pbsuite/jelly/Support.py'... Compiling 'pbsuite/jelly/__init__.py'... Compiling 'pbsuite/jelly/m4pie.py'... Listing 'pbsuite/utils'... Compiling 'pbsuite/utils/BamStat.py'... Compiling 'pbsuite/utils/BedIO.py'... Compiling 'pbsuite/utils/CommandRunner.py'... Compiling 'pbsuite/utils/FileHandlers.py'... Compiling 'pbsuite/utils/VCFIO.py'... Compiling 'pbsuite/utils/__init__.py'... Compiling 'pbsuite/utils/bamToFastq.py'... Compiling 'pbsuite/utils/blasrToBed.py'... Compiling 'pbsuite/utils/fakeQuals.py'... Compiling 'pbsuite/utils/fastqDivide.py'... Compiling 'pbsuite/utils/fastqSplit.py'... Compiling 'pbsuite/utils/jellyoutputrename.py'... Compiling 'pbsuite/utils/longCCSCombine.py'... Compiling 'pbsuite/utils/mapStats.py'... Compiling 'pbsuite/utils/mergeFaQu.py'... Compiling 'pbsuite/utils/quickN50.py'... Compiling 'pbsuite/utils/readSummary.py'... Compiling 'pbsuite/utils/setupLogging.py'... Compiling 'pbsuite/utils/summarizeAssembly.py'... Listing 'pbsuite/utils/vcfTemplates'... Compiling 'pbsuite/utils/vcfTemplates/spotToVCF.py'... make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4153638 and its subdirectories I: Current time: Mon Nov 3 10:26:49 -12 2025 I: pbuilder-time-stamp: 1762208809 Mon Nov 3 22:26:49 UTC 2025 I: Signing ./b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo as pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Mon Nov 3 22:26:49 UTC 2025 I: Signed ./b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo as ./b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Mon Nov 3 22:26:49 UTC 2025 - build #1 for pbsuite/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Mon Nov 3 22:26:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Gvy50QTc, removing. /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Oct 1 16:03 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 1 16:03 b2 -rw-r--r-- 1 jenkins jenkins 2281 Feb 8 2021 pbsuite_15.8.24+dfsg-7.dsc -rw------- 1 jenkins jenkins 3428 Oct 1 16:03 rbuildlog.uwBlmZ0 /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1: total 2604 -rw-r--r-- 1 jenkins jenkins 38797 Oct 1 16:03 build.log -rw-r--r-- 1 jenkins jenkins 1057276 Oct 1 16:03 pbhoney_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 969140 Oct 1 16:03 pbjelly_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 24488 Oct 1 16:03 pbsuite_15.8.24+dfsg-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2281 Oct 1 16:03 pbsuite_15.8.24+dfsg-7.dsc -rw-r--r-- 1 jenkins jenkins 5228 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 6848 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7730 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2554 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1276 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_source.changes -rw-r--r-- 1 jenkins jenkins 19852 Oct 1 16:03 python3-pbbanana_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 508472 Oct 1 16:03 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2: total 0 Tue Oct 1 16:03:51 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Nov 3 10:26:12 -12 2025 I: pbuilder-time-stamp: 1762208772 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-7.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 8 07:05:55 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsuite_15.8.24+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='e6e4c3a303344f29aec0ed7d46c4e2a7' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='4153638' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_HF1b --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240824 [109 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Fetched 27.4 MB in 0s (99.0 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20215 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21287 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../37-python3-pkg-resources_74.1.2-2_all.deb ... Unpacking python3-pkg-resources (74.1.2-2) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../38-python3-zipp_3.20.2-1_all.deb ... Unpacking python3-zipp (3.20.2-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../39-python3-setuptools_74.1.2-2_all.deb ... Unpacking python3-setuptools (74.1.2-2) ... Selecting previously unselected package dh-python. Preparing to unpack .../40-dh-python_6.20240824_all.deb ... Unpacking dh-python (6.20240824) ... Selecting previously unselected package python3-all. Preparing to unpack .../41-python3-all_3.12.6-1_arm64.deb ... Unpacking python3-all (3.12.6-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 3 22:26:31 UTC 2025. Universal Time is now: Mon Nov 3 22:26:31 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-zipp (3.20.2-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.3.0-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-setuptools (74.1.2-2) ... Setting up dh-python (6.20240824) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_build python3 -m compileall pbsuite pbsuite/banana/MakeOverlapTable.py:10: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeOverlapTable.py:26: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/MakeReciprocal.py:12: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeReciprocal.py:36: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/OLCAssembly.py:277: SyntaxWarning: invalid escape sequence '\:' _exe("grep iid alignments.overlaps_realigned | cut -f2 -d\: > internal.ids") pbsuite/banana/OLCAssembly.py:304: SyntaxWarning: invalid escape sequence '\d' getContigName = re.compile("(\d+)_contig") pbsuite/banana/chunkyBlasr.py:123: SyntaxWarning: invalid escape sequence '\ ' "awk -F\ '{{if ($1 < 500) print $2}}' | " pbsuite/honey/Force.py:523: SyntaxWarning: invalid escape sequence '\?' forceRe = re.compile("(?PTrue|False|\?)\[(?P.*)\|(?P.*)\]") pbsuite/honey/bampie.py:85: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/honey/bampie.py:166: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P[01])(?P.*):(?P\d+)__(?P.*)$") pbsuite/honey/realign.py:199: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/jelly/Extraction.py:59: SyntaxWarning: invalid escape sequence '\d' getSub = re.compile("(.*)##(\d+)#(\d+)##$") pbsuite/jelly/Extraction.py:326: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/jelly/Setup.py:16: SyntaxWarning: invalid escape sequence '\|' refParser = re.compile("(.*)\|(ref\d{7})/?(\d+)?$") pbsuite/jelly/Stages.py:82: SyntaxWarning: invalid escape sequence '\d' nprocRe = re.compile("--nproc (\d+)") pbsuite/jelly/m4pie.py:17: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/jelly/m4pie.py:108: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P\d+)__(?P.*)$") pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P\w+)\s*=\s*\<\s*ID\s*=\s*(?P\w+)\s*' pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P[0-9.])\s*,' pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P\w+)\s*,)?' pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P.*)"\s*\>\s*'),\ pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}") Listing 'pbsuite'... Compiling 'pbsuite/__init__.py'... Listing 'pbsuite/banana'... Compiling 'pbsuite/banana/Banana.py'... Compiling 'pbsuite/banana/MakeOverlapTable.py'... Compiling 'pbsuite/banana/MakeReciprocal.py'... Compiling 'pbsuite/banana/OLCAssembly.py'... Compiling 'pbsuite/banana/Polish.py'... Compiling 'pbsuite/banana/SeqAsm.py'... Compiling 'pbsuite/banana/__init__.py'... Compiling 'pbsuite/banana/chunkyBlasr.py'... Listing 'pbsuite/honey'... Compiling 'pbsuite/honey/ComplexResolver.py'... Compiling 'pbsuite/honey/Force.py'... Compiling 'pbsuite/honey/HSpots.py'... Compiling 'pbsuite/honey/Honey.py'... Compiling 'pbsuite/honey/SVMachines.py'... Compiling 'pbsuite/honey/TGraf.py'... Compiling 'pbsuite/honey/Valid.py'... Compiling 'pbsuite/honey/__init__.py'... Compiling 'pbsuite/honey/bakH.py'... Compiling 'pbsuite/honey/bampie.py'... Compiling 'pbsuite/honey/massivePhrap.py'... Compiling 'pbsuite/honey/realign.py'... Compiling 'pbsuite/honey/recallSpots.py'... Compiling 'pbsuite/honey/spotH5Merge.py'... Compiling 'pbsuite/honey/spotH5dump.py'... Compiling 'pbsuite/honey/spotToBed.py'... Compiling 'pbsuite/honey/spotToVCF.py'... Listing 'pbsuite/honey/svm'... Listing 'pbsuite/honey/svm/ecoli_jul1.svm'... Listing 'pbsuite/honey/svm/ecoli_jul12.svm'... Listing 'pbsuite/jelly'... Compiling 'pbsuite/jelly/Assembly.py'... Compiling 'pbsuite/jelly/Collection.py'... Compiling 'pbsuite/jelly/Extraction.py'... Compiling 'pbsuite/jelly/GetSubs.py'... Compiling 'pbsuite/jelly/Jelly.py'... Compiling 'pbsuite/jelly/QFix.py'... Compiling 'pbsuite/jelly/Setup.py'... Compiling 'pbsuite/jelly/Stages.py'... Compiling 'pbsuite/jelly/Support.py'... Compiling 'pbsuite/jelly/__init__.py'... Compiling 'pbsuite/jelly/m4pie.py'... Listing 'pbsuite/utils'... Compiling 'pbsuite/utils/BamStat.py'... Compiling 'pbsuite/utils/BedIO.py'... Compiling 'pbsuite/utils/CommandRunner.py'... Compiling 'pbsuite/utils/FileHandlers.py'... Compiling 'pbsuite/utils/VCFIO.py'... Compiling 'pbsuite/utils/__init__.py'... Compiling 'pbsuite/utils/bamToFastq.py'... Compiling 'pbsuite/utils/blasrToBed.py'... Compiling 'pbsuite/utils/fakeQuals.py'... Compiling 'pbsuite/utils/fastqDivide.py'... Compiling 'pbsuite/utils/fastqSplit.py'... Compiling 'pbsuite/utils/jellyoutputrename.py'... Compiling 'pbsuite/utils/longCCSCombine.py'... Compiling 'pbsuite/utils/mapStats.py'... Compiling 'pbsuite/utils/mergeFaQu.py'... Compiling 'pbsuite/utils/quickN50.py'... Compiling 'pbsuite/utils/readSummary.py'... Compiling 'pbsuite/utils/setupLogging.py'... Compiling 'pbsuite/utils/summarizeAssembly.py'... Listing 'pbsuite/utils/vcfTemplates'... Compiling 'pbsuite/utils/vcfTemplates/spotToVCF.py'... make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/4153638 and its subdirectories I: Current time: Mon Nov 3 10:26:49 -12 2025 I: pbuilder-time-stamp: 1762208809 Tue Oct 1 16:03:52 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink01-arm64.debian.net. Tue Oct 1 16:03:52 UTC 2024 I: Preparing to do remote build '2' on codethink01-arm64.debian.net. Tue Oct 1 16:03:52 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Tue Oct 1 16:03:52 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-BgPqJ6' ==================================================================================== Mon Nov 3 22:26:53 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "2 pbsuite unstable /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC 15.8.24+dfsg-7" as arguments. Mon Nov 3 22:26:53 UTC 2025 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-dDdcXPYt" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 3 22:26:54 UTC 2025 I: Downloading source for unstable/pbsuite=15.8.24+dfsg-7 Reading package lists... NOTICE: 'pbsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbsuite.git Please use: git clone https://salsa.debian.org/med-team/pbsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1642 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (dsc) [2281 B] Get:2 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (tar) [1615 kB] Get:3 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (diff) [24.5 kB] Fetched 1642 kB in 0s (62.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'pbsuite' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/pbsuite.git Please use: git clone https://salsa.debian.org/med-team/pbsuite.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1642 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (dsc) [2281 B] Get:2 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (tar) [1615 kB] Get:3 http://deb.debian.org/debian unstable/main pbsuite 15.8.24+dfsg-7 (diff) [24.5 kB] Fetched 1642 kB in 0s (62.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building pbsuite in unstable on arm64 on codethink01-arm64 now. Date: Mon Nov 3 22:26:54 GMT 2025 Date UTC: Mon Nov 3 22:26:54 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_hwAq + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' pbsuite = debian-installer -o pbsuite = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' pbsuite = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_hwAq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2 --logfile b2/build.log pbsuite_15.8.24+dfsg-7.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 4 12:26:54 +14 2025 I: pbuilder-time-stamp: 1762208814 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [pbsuite_15.8.24+dfsg-7.dsc] I: copying [./pbsuite_15.8.24+dfsg.orig.tar.xz] I: copying [./pbsuite_15.8.24+dfsg-7.debian.tar.xz] I: Extracting source gpgv: Signature made Mon Feb 8 07:05:55 2021 gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "npatra974@gmail.com" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./pbsuite_15.8.24+dfsg-7.dsc: no acceptable signature found dpkg-source: info: extracting pbsuite in pbsuite-15.8.24+dfsg dpkg-source: info: unpacking pbsuite_15.8.24+dfsg.orig.tar.xz dpkg-source: info: unpacking pbsuite_15.8.24+dfsg-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix-syntax-error.patch dpkg-source: info: applying intervaltree-import-statement.patch dpkg-source: info: applying fix-example.patch dpkg-source: info: applying fix-shebang-lines.patch dpkg-source: info: applying blasr-5.patch dpkg-source: info: applying intermediate-reads-files.patch dpkg-source: info: applying 2to3.patch dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D01_modify_environment starting debug: Running on codethink01-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 3 22:27 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=48ef1390b51741d9ba0007008b63b08d LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=708719 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_hwAq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2 --logfile b2/build.log pbsuite_15.8.24+dfsg-7.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 27.4 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.6-1 [806 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.3-1 [90.2 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.6-1 [1935 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024a-4 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1 [22.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3 [78.4 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b2 [37.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.6-1 [1898 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.6-1 [669 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.3.0-1 [36.5 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 58 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.20.2-1 [10.3 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240824 [109 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] Fetched 27.4 MB in 0s (79.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.6-1_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.6-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.3-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.6-1_arm64.deb ... Unpacking python3.12-minimal (3.12.6-1) ... Setting up libpython3.12-minimal:arm64 (3.12.6-1) ... Setting up libexpat1:arm64 (2.6.3-1) ... Setting up python3.12-minimal (3.12.6-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20215 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024a-4_all.deb ... Unpacking tzdata (2024a-4) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-3_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-3) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b2_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b2) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.6-1) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.6-1_arm64.deb ... Unpacking python3.12 (3.12.6-1) ... 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Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. 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Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../24-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../25-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../30-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../31-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../32-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../33-python3-typeguard_4.3.0-1_all.deb ... Unpacking python3-typeguard (4.3.0-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../34-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../35-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../36-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. 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Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 3 22:27:27 UTC 2025. Universal Time is now: Mon Nov 3 22:27:27 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b2) ... Setting up libpython3.12-stdlib:arm64 (3.12.6-1) ... Setting up python3.12 (3.12.6-1) ... Setting up debhelper (13.20) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/708719/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/708719/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_clean find -name "*.pyc" -delete make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_clean debian/rules binary dh binary --with python3 dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_auto_build python3 -m compileall pbsuite pbsuite/banana/MakeOverlapTable.py:10: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeOverlapTable.py:26: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/MakeReciprocal.py:12: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/banana/MakeReciprocal.py:36: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/banana/OLCAssembly.py:277: SyntaxWarning: invalid escape sequence '\:' _exe("grep iid alignments.overlaps_realigned | cut -f2 -d\: > internal.ids") pbsuite/banana/OLCAssembly.py:304: SyntaxWarning: invalid escape sequence '\d' getContigName = re.compile("(\d+)_contig") pbsuite/banana/chunkyBlasr.py:123: SyntaxWarning: invalid escape sequence '\ ' "awk -F\ '{{if ($1 < 500) print $2}}' | " pbsuite/honey/Force.py:523: SyntaxWarning: invalid escape sequence '\?' forceRe = re.compile("(?PTrue|False|\?)\[(?P.*)\|(?P.*)\]") pbsuite/honey/bampie.py:85: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/honey/bampie.py:166: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P[01])(?P.*):(?P\d+)__(?P.*)$") pbsuite/honey/realign.py:199: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/jelly/Extraction.py:59: SyntaxWarning: invalid escape sequence '\d' getSub = re.compile("(.*)##(\d+)#(\d+)##$") pbsuite/jelly/Extraction.py:326: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/jelly/Setup.py:16: SyntaxWarning: invalid escape sequence '\|' refParser = re.compile("(.*)\|(ref\d{7})/?(\d+)?$") pbsuite/jelly/Stages.py:82: SyntaxWarning: invalid escape sequence '\d' nprocRe = re.compile("--nproc (\d+)") pbsuite/jelly/m4pie.py:17: SyntaxWarning: invalid escape sequence '\d' """ pbsuite/jelly/m4pie.py:108: SyntaxWarning: invalid escape sequence '\d' datGrab = re.compile("^(?P\d+)(?P[pe])(?P\d+)__(?P.*)$") pbsuite/utils/BamStat.py:75: SyntaxWarning: invalid escape sequence '\d' for i in re.findall("\d+|\^?[ATCGN]+", md): pbsuite/utils/FileHandlers.py:49: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:60: SyntaxWarning: invalid escape sequence '\s' splRE = re.compile("\s+") pbsuite/utils/FileHandlers.py:87: SyntaxWarning: invalid escape sequence '\s' self[key] = list(map(int, re.split("\s+", self[key].getvalue().strip()))) pbsuite/utils/FileHandlers.py:475: SyntaxWarning: invalid escape sequence '\d' subreadGrab = re.compile(".*/(\d+)_(\d+)$") pbsuite/utils/FileHandlers.py:499: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/FileHandlers.py:609: SyntaxWarning: invalid escape sequence '\s' data = re.split("\s+",line) pbsuite/utils/VCFIO.py:110: SyntaxWarning: invalid escape sequence '\s' METARE = re.compile(('##\s*(?P\w+)\s*=\s*\<\s*ID\s*=\s*(?P\w+)\s*' pbsuite/utils/VCFIO.py:111: SyntaxWarning: invalid escape sequence '\s' ',\s*(Number\s*=\s*(?P[0-9.])\s*,' pbsuite/utils/VCFIO.py:112: SyntaxWarning: invalid escape sequence '\s' '\s*Type\s*=\s*(?P\w+)\s*,)?' pbsuite/utils/VCFIO.py:113: SyntaxWarning: invalid escape sequence '\s' '\s*Description\s*=\s*"(?P.*)"\s*\>\s*'),\ pbsuite/utils/jellyoutputrename.py:22: SyntaxWarning: invalid escape sequence '\d' regex = re.compile("ref\d{7}") Listing 'pbsuite'... Compiling 'pbsuite/__init__.py'... Listing 'pbsuite/banana'... Compiling 'pbsuite/banana/Banana.py'... Compiling 'pbsuite/banana/MakeOverlapTable.py'... Compiling 'pbsuite/banana/MakeReciprocal.py'... Compiling 'pbsuite/banana/OLCAssembly.py'... Compiling 'pbsuite/banana/Polish.py'... Compiling 'pbsuite/banana/SeqAsm.py'... Compiling 'pbsuite/banana/__init__.py'... Compiling 'pbsuite/banana/chunkyBlasr.py'... Listing 'pbsuite/honey'... Compiling 'pbsuite/honey/ComplexResolver.py'... Compiling 'pbsuite/honey/Force.py'... Compiling 'pbsuite/honey/HSpots.py'... Compiling 'pbsuite/honey/Honey.py'... Compiling 'pbsuite/honey/SVMachines.py'... Compiling 'pbsuite/honey/TGraf.py'... Compiling 'pbsuite/honey/Valid.py'... Compiling 'pbsuite/honey/__init__.py'... Compiling 'pbsuite/honey/bakH.py'... Compiling 'pbsuite/honey/bampie.py'... Compiling 'pbsuite/honey/massivePhrap.py'... Compiling 'pbsuite/honey/realign.py'... Compiling 'pbsuite/honey/recallSpots.py'... Compiling 'pbsuite/honey/spotH5Merge.py'... Compiling 'pbsuite/honey/spotH5dump.py'... Compiling 'pbsuite/honey/spotToBed.py'... Compiling 'pbsuite/honey/spotToVCF.py'... Listing 'pbsuite/honey/svm'... Listing 'pbsuite/honey/svm/ecoli_jul1.svm'... Listing 'pbsuite/honey/svm/ecoli_jul12.svm'... Listing 'pbsuite/jelly'... Compiling 'pbsuite/jelly/Assembly.py'... Compiling 'pbsuite/jelly/Collection.py'... Compiling 'pbsuite/jelly/Extraction.py'... Compiling 'pbsuite/jelly/GetSubs.py'... Compiling 'pbsuite/jelly/Jelly.py'... Compiling 'pbsuite/jelly/QFix.py'... Compiling 'pbsuite/jelly/Setup.py'... Compiling 'pbsuite/jelly/Stages.py'... Compiling 'pbsuite/jelly/Support.py'... Compiling 'pbsuite/jelly/__init__.py'... Compiling 'pbsuite/jelly/m4pie.py'... Listing 'pbsuite/utils'... Compiling 'pbsuite/utils/BamStat.py'... Compiling 'pbsuite/utils/BedIO.py'... Compiling 'pbsuite/utils/CommandRunner.py'... Compiling 'pbsuite/utils/FileHandlers.py'... Compiling 'pbsuite/utils/VCFIO.py'... Compiling 'pbsuite/utils/__init__.py'... Compiling 'pbsuite/utils/bamToFastq.py'... Compiling 'pbsuite/utils/blasrToBed.py'... Compiling 'pbsuite/utils/fakeQuals.py'... Compiling 'pbsuite/utils/fastqDivide.py'... Compiling 'pbsuite/utils/fastqSplit.py'... Compiling 'pbsuite/utils/jellyoutputrename.py'... Compiling 'pbsuite/utils/longCCSCombine.py'... Compiling 'pbsuite/utils/mapStats.py'... Compiling 'pbsuite/utils/mergeFaQu.py'... Compiling 'pbsuite/utils/quickN50.py'... Compiling 'pbsuite/utils/readSummary.py'... Compiling 'pbsuite/utils/setupLogging.py'... Compiling 'pbsuite/utils/summarizeAssembly.py'... Listing 'pbsuite/utils/vcfTemplates'... Compiling 'pbsuite/utils/vcfTemplates/spotToVCF.py'... make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_install -Xsam2bam -XsortChunks.sh make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_python3 dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_fixperms find debian/ -name Valid.py -exec chmod -x {} + make[1]: Leaving directory '/build/reproducible-path/pbsuite-15.8.24+dfsg' dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/708719/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/708719/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/708719 and its subdirectories I: Current time: Tue Nov 4 12:27:59 +14 2025 I: pbuilder-time-stamp: 1762208879 + false + set +x Mon Nov 3 22:27:59 UTC 2025 I: Signing ./b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo as pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Mon Nov 3 22:27:59 UTC 2025 I: Signed ./b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo as ./b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc Mon Nov 3 22:27:59 UTC 2025 - build #2 for pbsuite/unstable/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Mon Nov 3 22:27:59 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-dDdcXPYt, removing. /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC: total 56 drwxr-xr-x 2 jenkins jenkins 4096 Oct 1 16:03 b1 drwxr-xr-x 2 jenkins jenkins 4096 Oct 1 16:05 b2 -rw-r--r-- 1 jenkins jenkins 2281 Feb 8 2021 pbsuite_15.8.24+dfsg-7.dsc -rw------- 1 jenkins jenkins 42526 Oct 1 16:03 rbuildlog.uwBlmZ0 /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1: total 2616 -rw-r--r-- 1 jenkins jenkins 38797 Oct 1 16:03 build.log -rw-r--r-- 1 jenkins jenkins 1057276 Oct 1 16:03 pbhoney_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 969140 Oct 1 16:03 pbjelly_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 24488 Oct 1 16:03 pbsuite_15.8.24+dfsg-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2281 Oct 1 16:03 pbsuite_15.8.24+dfsg-7.dsc -rw-r--r-- 1 jenkins jenkins 5228 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 6848 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7730 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2554 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1276 Oct 1 16:03 pbsuite_15.8.24+dfsg-7_source.changes -rw-r--r-- 1 jenkins jenkins 19852 Oct 1 16:03 python3-pbbanana_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 508472 Oct 1 16:03 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2: total 2604 -rw-r--r-- 1 jenkins jenkins 40732 Oct 1 16:05 build.log -rw-r--r-- 1 jenkins jenkins 1057276 Oct 1 16:05 pbhoney_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 969140 Oct 1 16:05 pbjelly_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 24488 Oct 1 16:05 pbsuite_15.8.24+dfsg-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2281 Oct 1 16:05 pbsuite_15.8.24+dfsg-7.dsc -rw-r--r-- 1 jenkins jenkins 5228 Oct 1 16:05 pbsuite_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 6848 Oct 1 16:05 pbsuite_15.8.24+dfsg-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7730 Oct 1 16:05 pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 2554 Oct 1 16:05 pbsuite_15.8.24+dfsg-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1276 Oct 1 16:05 pbsuite_15.8.24+dfsg-7_source.changes -rw-r--r-- 1 jenkins jenkins 19852 Oct 1 16:05 python3-pbbanana_15.8.24+dfsg-7_all.deb -rw-r--r-- 1 jenkins jenkins 508472 Oct 1 16:05 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Tue Oct 1 16:05:01 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. Tue Oct 1 16:05:02 UTC 2024 I: pbsuite_15.8.24+dfsg-7_arm64.changes: Format: 1.8 Date: Mon, 08 Feb 2021 12:31:56 +0530 Source: pbsuite Binary: pbhoney pbjelly pbsuite python3-pbbanana python3-pbsuite-utils Architecture: all Version: 15.8.24+dfsg-7 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: pbhoney - genomic structural variation discovery pbjelly - genome assembly upgrading tool pbsuite - software for Pacific Biosciences sequencing data python3-pbbanana - additional utilities for the pbsuite python3-pbsuite-utils - software for Pacific Biosciences sequencing data -- Python utilit Changes: pbsuite (15.8.24+dfsg-7) unstable; urgency=high . * Team Upload. * Add skip-not-installable restriction Checksums-Sha1: a5ba04d2e83f01b99dc9085226c3b5aa25225ae2 1057276 pbhoney_15.8.24+dfsg-7_all.deb 7dc1ffddeb534fe79bbbbfa32fc1d8caa2f2bbce 969140 pbjelly_15.8.24+dfsg-7_all.deb fa326f4d05e1d88778ba62c498e82a16d864ce24 5228 pbsuite_15.8.24+dfsg-7_all.deb eed835d0c2ac84d010c08b86eb2b6bd59b6f21d4 6848 pbsuite_15.8.24+dfsg-7_arm64.buildinfo 8236eeb20ba2ca8a6ede1da7d1e80def52bdb769 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb c24e6b0b5832abfc7901bb771ad3014a24611fa2 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Checksums-Sha256: f1e25cd74a87a023ad7859ec7f64abcb49c41a69281471187dfc767f2a93ae35 1057276 pbhoney_15.8.24+dfsg-7_all.deb 4fd1d5fc298460a7ec79251ba0ad0df5b6a47083835bc4ed73fa6caf4fbd0de9 969140 pbjelly_15.8.24+dfsg-7_all.deb ac8a927aa3663277ca0df0023d9d29540257c55af470ec69596f27981cb59bcd 5228 pbsuite_15.8.24+dfsg-7_all.deb 4905b422dc491838dba73790384fa5ac4ff15738a78eef795cf33972d8616b42 6848 pbsuite_15.8.24+dfsg-7_arm64.buildinfo 6a4382ddf5bd340817de815c5b7b96075b4300d9e26f4a2fbe29a191f2eb5f75 19852 python3-pbbanana_15.8.24+dfsg-7_all.deb 066f1797ab8f7b05e9bf7d6362fdbeb80290c2fcfaaf82b104527c3b69a94c0a 508472 python3-pbsuite-utils_15.8.24+dfsg-7_all.deb Files: 9306e376114e345a8df9d60c1c614ac7 1057276 science optional pbhoney_15.8.24+dfsg-7_all.deb 52d13269da2c955beb5fe07603f0bd41 969140 science optional pbjelly_15.8.24+dfsg-7_all.deb a42be9cdc9f976bc35df895bc6b8ba01 5228 metapackages optional pbsuite_15.8.24+dfsg-7_all.deb 4d19d6c2b44a5629e0569b44f98312e8 6848 science optional pbsuite_15.8.24+dfsg-7_arm64.buildinfo 54179a1997cd9024c679e1e506e073dd 19852 python optional python3-pbbanana_15.8.24+dfsg-7_all.deb 20dfb3c19d68b4be29d07947011beb69 508472 python optional python3-pbsuite-utils_15.8.24+dfsg-7_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/pbsuite_15.8.24+dfsg-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/pbsuite_15.8.24+dfsg-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/pbsuite_15.8.24+dfsg-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/pbsuite_15.8.24+dfsg-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/pbsuite_15.8.24+dfsg-7_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/pbsuite_15.8.24+dfsg-7.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-10-01 16:03:51.602605590 +0000 +++ b2/build.log 2024-10-01 16:05:01.235640833 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Nov 3 10:26:12 -12 2025 -I: pbuilder-time-stamp: 1762208772 +I: Current time: Tue Nov 4 12:26:54 +14 2025 +I: pbuilder-time-stamp: 1762208814 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -35,52 +35,84 @@ dpkg-source: info: applying fix_py3.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D01_modify_environment starting +debug: Running on codethink01-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 3 22:27 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='e6e4c3a303344f29aec0ed7d46c4e2a7' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='4153638' - PS1='# ' - PS2='> ' + INVOCATION_ID=48ef1390b51741d9ba0007008b63b08d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=708719 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_HF1b --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1 --logfile b1/build.log pbsuite_15.8.24+dfsg-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbuilderrc_hwAq --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2 --logfile b2/build.log pbsuite_15.8.24+dfsg-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/4153638/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -183,7 +215,7 @@ Get: 61 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20240824 [109 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 python3-all arm64 3.12.6-1 [1040 B] -Fetched 27.4 MB in 0s (99.0 MB/s) +Fetched 27.4 MB in 0s (79.1 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) @@ -406,8 +438,8 @@ Setting up tzdata (2024a-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Mon Nov 3 22:26:31 UTC 2025. -Universal Time is now: Mon Nov 3 22:26:31 UTC 2025. +Local time is now: Mon Nov 3 22:27:27 UTC 2025. +Universal Time is now: Mon Nov 3 22:27:27 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -464,7 +496,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/pbsuite-15.8.24+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../pbsuite_15.8.24+dfsg-7_source.changes dpkg-buildpackage: info: source package pbsuite dpkg-buildpackage: info: source version 15.8.24+dfsg-7 dpkg-buildpackage: info: source distribution unstable @@ -638,10 +674,10 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'pbsuite' in '../pbsuite_15.8.24+dfsg-7_all.deb'. +dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'python3-pbsuite-utils' in '../python3-pbsuite-utils_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbjelly' in '../pbjelly_15.8.24+dfsg-7_all.deb'. dpkg-deb: building package 'pbhoney' in '../pbhoney_15.8.24+dfsg-7_all.deb'. -dpkg-deb: building package 'python3-pbbanana' in '../python3-pbbanana_15.8.24+dfsg-7_all.deb'. dpkg-genbuildinfo --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.buildinfo dpkg-genchanges --build=binary -O../pbsuite_15.8.24+dfsg-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -649,12 +685,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/708719/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/4153638 and its subdirectories -I: Current time: Mon Nov 3 10:26:49 -12 2025 -I: pbuilder-time-stamp: 1762208809 +I: removing directory /srv/workspace/pbuilder/708719 and its subdirectories +I: Current time: Tue Nov 4 12:27:59 +14 2025 +I: pbuilder-time-stamp: 1762208879 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/pbsuite_15.8.24+dfsg-7.diff: 67.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/pbsuite_15.8.24+dfsg-7.diff.gz b2/build.log: 78.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.2% -- replaced with stdout Tue Oct 1 16:05:03 UTC 2024 I: diffoscope 278 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_pbsuite_unstable_arm64_1727798704 + touch /var/log/reproducible-builds/diffoscope_stamp_pbsuite_unstable_arm64_1727798704 + RESULT=0 + systemd-run '--description=diffoscope on pbsuite/15.8.24+dfsg-7 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_17-56684 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC --run-session -c jenkins-reproducible-unstable-diffoscope-521ee539-b242-473e-b787-62da070e21e3 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/dbd-tmp-MLiYLjV ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1/pbsuite_15.8.24+dfsg-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2/pbsuite_15.8.24+dfsg-7_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_17-56684.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/pbsuite_15.8.24+dfsg-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b1/pbsuite_15.8.24+dfsg-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.YfWvGqCC/b2/pbsuite_15.8.24+dfsg-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.528s) 0.528s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.054s) 0.054s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1.096s CPU time consumed: 1.074s _ _ _ _ __ | |__ ___ _ _(_) |_ ___ | '_ \| '_ \/ __| | | | | __/ _ \ | |_) | |_) \__ \ |_| | | || __/ | .__/|_.__/|___/\__,_|_|\__\___| |_| Tue Oct 1 16:05:22 UTC 2024 I: diffoscope 278 found no differences in the changes files, and a .buildinfo file also exists. Tue Oct 1 16:05:22 UTC 2024 I: pbsuite from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-10-01 16:05:23] INFO: Starting at 2024-10-01 16:05:23.099811 [2024-10-01 16:05:23] INFO: Generating the pages of 1 package(s) [2024-10-01 16:05:23] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/pbsuite didn't produce a buildlog, even though it has been built. [2024-10-01 16:05:23] INFO: Finished at 2024-10-01 16:05:23.837342, took: 0:00:00.737542 Tue Oct 1 16:05:23 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/pbsuite.html Tue Oct 1 16:05:23 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Oct 1 16:05:23 UTC 2024 I: Submitting 8.0K b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc https://buildinfo.debian.net/eed835d0c2ac84d010c08b86eb2b6bd59b6f21d4/pbsuite_15.8.24+dfsg-7_all Tue Oct 1 16:05:25 UTC 2024 I: Submitting 8.0K b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc https://buildinfo.debian.net/f57ce88b8ad4a69f9692a9750381e0b96009ab04/pbsuite_15.8.24+dfsg-7_all Tue Oct 1 16:05:28 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Oct 1 16:05:28 UTC 2024 I: Done submitting .buildinfo files. Tue Oct 1 16:05:28 UTC 2024 I: Removing signed pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc files: removed './b1/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc' removed './b2/pbsuite_15.8.24+dfsg-7_arm64.buildinfo.asc' 1727798728 arm64 unstable pbsuite Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/pbsuite_15.8.24+dfsg-7.rbuild.log: 75.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/pbsuite_15.8.24+dfsg-7.rbuild.log.gz [2024-10-01 16:05:29] INFO: Starting at 2024-10-01 16:05:29.156448 [2024-10-01 16:05:29] INFO: Generating the pages of 1 package(s) [2024-10-01 16:05:29] INFO: Finished at 2024-10-01 16:05:29.651143, took: 0:00:00.494706 All cleanup done. Tue Oct 1 16:05:29 UTC 2024 - total duration: 0h 2m 36s. Tue Oct 1 16:05:29 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-RIDA1Jxv, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 43.683s CPU time consumed: 10.732s