Running as unit: rb-build-arm64_18-68666.service ==================================================================================== Fri Nov 22 16:43:58 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_18) on jenkins, called using "codethink04-arm64 codethink01-arm64" as arguments. Fri Nov 22 16:43:58 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Wj0bskRF" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:43:58 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 16:43:58 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-oALURc' Fri Nov 22 16:43:59 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Fri Nov 22 16:43:59 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-pIynjU' ok, let's check if unicycler is building anywhere yet… ok, unicycler is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of unicycler in bookworm on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink01-arm64.debian.net. ============================================================================= Fri Nov 22 16:44:09 UTC 2024 I: starting to build unicycler/bookworm/arm64 on jenkins on '2024-11-22 16:43' Fri Nov 22 16:44:09 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_18/68666/console.log 1732293849 arm64 bookworm unicycler Fri Nov 22 16:44:09 UTC 2024 I: Downloading source for bookworm/unicycler=0.5.0+dfsg-1 --2024-11-22 16:44:10-- http://cdn-fastly.deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.0+dfsg-1.dsc’ 0K .. 100% 331M=0s 2024-11-22 16:44:10 (331 MB/s) - ‘unicycler_0.5.0+dfsg-1.dsc’ saved [2379/2379] --2024-11-22 16:44:10-- http://cdn-fastly.deb.debian.org/debian/pool/main/u/unicycler/unicycler_0.5.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2379 (2.3K) [text/prs.lines.tag] Saving to: ‘unicycler_0.5.0+dfsg-1.dsc’ 0K .. 100% 331M=0s 2024-11-22 16:44:10 (331 MB/s) - ‘unicycler_0.5.0+dfsg-1.dsc’ saved [2379/2379] Fri Nov 22 16:44:10 UTC 2024 I: unicycler_0.5.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: unicycler Binary: unicycler, unicycler-data Architecture: any all Version: 0.5.0+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Liubov Chuprikova Homepage: https://github.com/rrwick/Unicycler Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/unicycler Vcs-Git: https://salsa.debian.org/med-team/unicycler.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@ Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk , bcftools, bowtie2 , miniasm, ncbi-blast+ , pilon , racon, samtools , spades (>= 3.14), libseqan2-dev, zlib1g-dev Package-List: unicycler deb science optional arch=any unicycler-data deb science optional arch=all Checksums-Sha1: 32c902b29cc4052d3a54417d168c89138f473095 14771144 unicycler_0.5.0+dfsg.orig.tar.xz c53b757f9382602a22a7d1005dd902d0d31fb44b 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz Checksums-Sha256: 99c484ed663d916854bcdd7f1508f97f4de044f36fcc4614d2fd99d78fa1cbdd 14771144 unicycler_0.5.0+dfsg.orig.tar.xz 88e21882618f0cc45d67a402754f6210f60c8f30a108040823a4f14a060de16b 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz Files: 2639d42c79fca3047358b09fc30c81e7 14771144 unicycler_0.5.0+dfsg.orig.tar.xz 6802bb6e98bbd404a7bab6b2d0ae58af 11900 unicycler_0.5.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOPYBQRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGStg/+Pp5SZSF+95IlY++zevAYthuMTWrWX5aO rJ/YdvGG8vvbL2ONV/A7mt9pqIZUFREk6FagvN9kF0Nm/SYchfK3yB77JPt2elYv B0qmFym//qOO8mctyPnUxD5dDlGSlilRKitm6vTfTnpemI/PgzYnf7CqhwNNW1uV 0956tVDBqyw36vqET0VlCMB/z0/VDVTtJ9/HPXPK31KSzzpPKmO9PD/SpVmSK9l3 pTnjK9jfBbZvfU6l8nnCM5zyXKOo1I0/ZDcBbecQh3YFU1qKGsg1z0PKldcDLdAk ljphiNP/J0V7XgMdVcNLf207KwvtNS0TMAn/ewuN7EAGUQY3XPKG8BztISP9KaCd fa6FoFpOvklN+BtsHzIm3Jvz52KobA/X0rzd5K5OCxPSKmz5UMuKPF7sWlttp16A RPs6w8P/51sOOjw3Z1knXkqzRlPXsXaHOk5MsirYypll6zauCHA0IoGCwcalyKE+ 2nTDltgrE9B76j857VcxCnvpdeXVhkW284DVWd0G5uwymgizzBZPFT8R7+SUamOO ALbCIcKIouLRbMSu+I2ralxOucKsqd1hgmDhtvXqzHgCXOvnVpyewUgR90pw5POJ iC1DNIhYDHCt+5zyj7+EpGgnPYq1NqRxDprqquLrCx4B8QCLzq1V+Q3fBHFH3oUB GXOZ8zj5LJ8= =uCIi -----END PGP SIGNATURE----- Fri Nov 22 16:44:10 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 16:44:10 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Nov 22 16:44:10 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Nov 22 16:44:10 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 16:44:10 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CndVxW' ==================================================================================== Fri Nov 22 16:44:11 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 unicycler bookworm /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB 0.5.0+dfsg-1" as arguments. Fri Nov 22 16:44:11 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-iNELIHHY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 16:44:11 UTC 2024 I: Downloading source for bookworm/unicycler=0.5.0+dfsg-1 Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (dsc) [2379 B] Get:2 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (diff) [11.9 kB] Fetched 14.8 MB in 0s (108 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'unicycler' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/unicycler.git Please use: git clone https://salsa.debian.org/med-team/unicycler.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 14.8 MB of source archives. Get:1 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (dsc) [2379 B] Get:2 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (tar) [14.8 MB] Get:3 http://deb.debian.org/debian bookworm/main unicycler 0.5.0+dfsg-1 (diff) [11.9 kB] Fetched 14.8 MB in 0s (108 MB/s) Download complete and in download only mode ============================================================================= Building unicycler in bookworm on arm64 on codethink04-arm64 now. Date: Fri Nov 22 16:44:12 GMT 2024 Date UTC: Fri Nov 22 16:44:12 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:44:12 -12 2024 I: pbuilder-time-stamp: 1732293852 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.0+dfsg-1.dsc] I: copying [./unicycler_0.5.0+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 03:30:28 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting unicycler in unicycler-0.5.0+dfsg dpkg-source: info: unpacking unicycler_0.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/468049/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='38072a8779b84bec94dc6c2f09932826' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='468049' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/pbuilderrc_do12 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/b1 --logfile b1/build.log unicycler_0.5.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Mar 29 2024 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Oct 18 00:56 more -rwsr-xr-x 1 root root 67744 Oct 18 00:56 mount -rwxr-xr-x 1 root root 67744 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Oct 18 00:56 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Oct 18 00:56 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/468049/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre3{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pilon{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} unzip{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libldap-common libltdl-dev libmail-sendmail-perl librsvg2-common libsasl2-modules libxt-dev lynx minimap publicsuffix rampler wget xdg-user-dirs 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 243 MB of archives. After unpacking 776 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre3{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pilon{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} unzip{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libldap-common libltdl-dev libmail-sendmail-perl librsvg2-common libsasl2-modules libxt-dev lynx minimap publicsuffix rampler wget xdg-user-dirs 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 243 MB of archives. After unpacking 776 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/468049 and its subdirectories Starting cleanup. All cleanup done. Fri Nov 22 16:44:26 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-iNELIHHY, removing. /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:44 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 16:44 b2 -rw------- 1 jenkins jenkins 3541 Nov 22 16:44 rbuildlog.PR7zH1C -rw-r--r-- 1 jenkins jenkins 2379 Dec 6 2022 unicycler_0.5.0+dfsg-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/b1: total 20 -rw-r--r-- 1 jenkins jenkins 19109 Nov 22 16:44 build.log /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/b2: total 0 Fri Nov 22 16:44:27 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 04:44:12 -12 2024 I: pbuilder-time-stamp: 1732293852 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/bookworm-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [unicycler_0.5.0+dfsg-1.dsc] I: copying [./unicycler_0.5.0+dfsg.orig.tar.xz] I: copying [./unicycler_0.5.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Dec 6 03:30:28 2022 -12 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./unicycler_0.5.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting unicycler in unicycler-0.5.0+dfsg dpkg-source: info: unpacking unicycler_0.5.0+dfsg.orig.tar.xz dpkg-source: info: unpacking unicycler_0.5.0+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying spades.patch dpkg-source: info: applying install_wo_extra_steps.patch dpkg-source: info: applying append_flags I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/468049/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='bookworm' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='38072a8779b84bec94dc6c2f09932826' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='468049' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/pbuilderrc_do12 --distribution bookworm --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/bookworm-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.ZVE03QxB/b1 --logfile b1/build.log unicycler_0.5.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin total 7104 -rwxr-xr-x 1 root root 1346480 Mar 29 2024 bash -rwxr-xr-x 3 root root 67728 Sep 18 2022 bunzip2 -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzcat lrwxrwxrwx 1 root root 6 Sep 18 2022 bzcmp -> bzdiff -rwxr-xr-x 1 root root 2225 Sep 18 2022 bzdiff lrwxrwxrwx 1 root root 6 Sep 18 2022 bzegrep -> bzgrep -rwxr-xr-x 1 root root 4893 Nov 27 2021 bzexe lrwxrwxrwx 1 root root 6 Sep 18 2022 bzfgrep -> bzgrep -rwxr-xr-x 1 root root 3775 Sep 18 2022 bzgrep -rwxr-xr-x 3 root root 67728 Sep 18 2022 bzip2 -rwxr-xr-x 1 root root 67664 Sep 18 2022 bzip2recover lrwxrwxrwx 1 root root 6 Sep 18 2022 bzless -> bzmore -rwxr-xr-x 1 root root 1297 Sep 18 2022 bzmore -rwxr-xr-x 1 root root 68536 Sep 20 2022 cat -rwxr-xr-x 1 root root 68616 Sep 20 2022 chgrp -rwxr-xr-x 1 root root 68552 Sep 20 2022 chmod -rwxr-xr-x 1 root root 68632 Sep 20 2022 chown -rwxr-xr-x 1 root root 200264 Sep 20 2022 cp -rwxr-xr-x 1 root root 133640 Jan 5 2023 dash -rwxr-xr-x 1 root root 134144 Sep 20 2022 date -rwxr-xr-x 1 root root 134248 Sep 20 2022 dd -rwxr-xr-x 1 root root 134888 Sep 20 2022 df -rwxr-xr-x 1 root root 200440 Sep 20 2022 dir -rwxr-xr-x 1 root root 141720 Oct 18 00:56 dmesg lrwxrwxrwx 1 root root 8 Dec 19 2022 dnsdomainname -> hostname lrwxrwxrwx 1 root root 8 Dec 19 2022 domainname -> hostname -rwxr-xr-x 1 root root 68408 Sep 20 2022 echo -rwxr-xr-x 1 root root 41 Jan 24 2023 egrep -rwxr-xr-x 1 root root 68384 Sep 20 2022 false -rwxr-xr-x 1 root root 41 Jan 24 2023 fgrep -rwxr-xr-x 1 root root 134584 Oct 18 00:56 findmnt -rwsr-xr-x 1 root root 67744 Mar 22 2023 fusermount -rwxr-xr-x 1 root root 198880 Jan 24 2023 grep -rwxr-xr-x 2 root root 2346 Apr 9 2022 gunzip -rwxr-xr-x 1 root root 6447 Apr 9 2022 gzexe -rwxr-xr-x 1 root root 93752 Apr 9 2022 gzip -rwxr-xr-x 1 root root 67592 Dec 19 2022 hostname -rwxr-xr-x 1 root root 68664 Sep 20 2022 ln -rwxr-xr-x 1 root root 69208 Mar 22 2023 login -rwxr-xr-x 1 root root 200440 Sep 20 2022 ls -rwxr-xr-x 1 root root 264360 Oct 18 00:56 lsblk -rwxr-xr-x 1 root root 134384 Sep 20 2022 mkdir -rwxr-xr-x 1 root root 68768 Sep 20 2022 mknod -rwxr-xr-x 1 root root 68472 Sep 20 2022 mktemp -rwxr-xr-x 1 root root 67752 Oct 18 00:56 more -rwsr-xr-x 1 root root 67744 Oct 18 00:56 mount -rwxr-xr-x 1 root root 67744 Oct 18 00:56 mountpoint -rwxr-xr-x 1 root root 134728 Sep 20 2022 mv lrwxrwxrwx 1 root root 8 Dec 19 2022 nisdomainname -> hostname lrwxrwxrwx 1 root root 14 Apr 2 2023 pidof -> /sbin/killall5 -rwxr-xr-x 1 root root 68496 Sep 20 2022 pwd lrwxrwxrwx 1 root root 4 Mar 29 2024 rbash -> bash -rwxr-xr-x 1 root root 68456 Sep 20 2022 readlink -rwxr-xr-x 1 root root 68592 Sep 20 2022 rm -rwxr-xr-x 1 root root 68480 Sep 20 2022 rmdir -rwxr-xr-x 1 root root 68392 Jul 28 2023 run-parts -rwxr-xr-x 1 root root 134536 Jan 5 2023 sed lrwxrwxrwx 1 root root 4 Jan 5 2023 sh -> dash -rwxr-xr-x 1 root root 68432 Sep 20 2022 sleep -rwxr-xr-x 1 root root 134088 Sep 20 2022 stty -rwsr-xr-x 1 root root 133312 Oct 18 00:56 su -rwxr-xr-x 1 root root 68448 Sep 20 2022 sync -rwxr-xr-x 1 root root 539896 Jan 19 2024 tar -rwxr-xr-x 1 root root 67904 Jul 28 2023 tempfile -rwxr-xr-x 1 root root 134160 Sep 20 2022 touch -rwxr-xr-x 1 root root 68384 Sep 20 2022 true -rwxr-xr-x 1 root root 67664 Mar 22 2023 ulockmgr_server -rwsr-xr-x 1 root root 67744 Oct 18 00:56 umount -rwxr-xr-x 1 root root 68416 Sep 20 2022 uname -rwxr-xr-x 2 root root 2346 Apr 9 2022 uncompress -rwxr-xr-x 1 root root 200440 Sep 20 2022 vdir -rwxr-xr-x 1 root root 133312 Oct 18 00:56 wdctl lrwxrwxrwx 1 root root 8 Dec 19 2022 ypdomainname -> hostname -rwxr-xr-x 1 root root 1984 Apr 9 2022 zcat -rwxr-xr-x 1 root root 1678 Apr 9 2022 zcmp -rwxr-xr-x 1 root root 6460 Apr 9 2022 zdiff -rwxr-xr-x 1 root root 29 Apr 9 2022 zegrep -rwxr-xr-x 1 root root 29 Apr 9 2022 zfgrep -rwxr-xr-x 1 root root 2081 Apr 9 2022 zforce -rwxr-xr-x 1 root root 8103 Apr 9 2022 zgrep -rwxr-xr-x 1 root root 2206 Apr 9 2022 zless -rwxr-xr-x 1 root root 1842 Apr 9 2022 zmore -rwxr-xr-x 1 root root 4577 Apr 9 2022 znew I: user script /srv/workspace/pbuilder/468049/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-setuptools, default-jdk, bcftools, bowtie2, miniasm, ncbi-blast+, pilon, racon, samtools, spades (>= 3.14), libseqan2-dev, zlib1g-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19569 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on default-jdk; however: Package default-jdk is not installed. pbuilder-satisfydepends-dummy depends on bcftools; however: Package bcftools is not installed. pbuilder-satisfydepends-dummy depends on bowtie2; however: Package bowtie2 is not installed. pbuilder-satisfydepends-dummy depends on miniasm; however: Package miniasm is not installed. pbuilder-satisfydepends-dummy depends on ncbi-blast+; however: Package ncbi-blast+ is not installed. pbuilder-satisfydepends-dummy depends on pilon; however: Package pilon is not installed. pbuilder-satisfydepends-dummy depends on racon; however: Package racon is not installed. pbuilder-satisfydepends-dummy depends on samtools; however: Package samtools is not installed. pbuilder-satisfydepends-dummy depends on spades (>= 3.14); however: Package spades is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev; however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre3{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pilon{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} unzip{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libldap-common libltdl-dev libmail-sendmail-perl librsvg2-common libsasl2-modules libxt-dev lynx minimap publicsuffix rampler wget xdg-user-dirs 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 243 MB of archives. After unpacking 776 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: spades (>= 3.14) which is a virtual package and is not provided by any available package Unable to resolve dependencies! Giving up... The following NEW packages will be installed: adwaita-icon-theme{a} at-spi2-common{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bcftools{a} bowtie2{a} bsdextrautils{a} ca-certificates{a} ca-certificates-java{a} debhelper{a} default-jdk{a} default-jdk-headless{a} default-jre{a} default-jre-headless{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} gettext{a} gettext-base{a} groff-base{a} gtk-update-icon-cache{a} hicolor-icon-theme{a} intltool-debian{a} java-common{a} java-wrappers{a} libapache-pom-java{a} libarchive-zip-perl{a} libasound2{a} libasound2-data{a} libatk1.0-0{a} libavahi-client3{a} libavahi-common-data{a} libavahi-common3{a} libbrotli1{a} libbsd0{a} libcairo2{a} libcommons-compress-java{a} libcommons-jexl2-java{a} libcommons-lang-java{a} libcommons-logging-java{a} libcommons-parent-java{a} libcups2{a} libcurl3-gnutls{a} libdatrie1{a} libdbus-1-3{a} libdebhelper-perl{a} libdeflate0{a} libdrm-amdgpu1{a} libdrm-common{a} libdrm-nouveau2{a} libdrm-radeon1{a} libdrm2{a} libedit2{a} libedlib1{a} libelf1{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgdk-pixbuf-2.0-0{a} libgdk-pixbuf2.0-common{a} libgif7{a} libgl1{a} libgl1-mesa-dri{a} libglapi-mesa{a} libglib2.0-0{a} libglvnd0{a} libglx-mesa0{a} libglx0{a} libgraphite2-3{a} libgtk2.0-0{a} libgtk2.0-common{a} libharfbuzz0b{a} libhts3{a} libhtscodecs2{a} libhtsjdk-java{a} libicu72{a} libjbig0{a} libjpeg62-turbo{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libllvm15{a} liblmdb0{a} libmagic-mgc{a} libmagic1{a} libmbedcrypto7{a} libmbedtls14{a} libmbedx509-1{a} libmjson-java{a} libncbi-ngs3{a} libncbi-vdb3{a} libncurses6{a} libnghttp2-14{a} libngs-java{a} libngs-jni{a} libnspr4{a} libnss3{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpcre3{a} libpcsclite1{a} libpipeline1{a} libpixman-1-0{a} libpng16-16{a} libpsl5{a} libpython3-stdlib{a} libpython3.11-minimal{a} libpython3.11-stdlib{a} libreadline8{a} librhino-java{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsensors-config{a} libsensors5{a} libseqan2-dev{a} libsnappy-java{a} libsnappy-jni{a} libsnappy1v5{a} libspoa7.0.0{a} libssh2-1{a} libsub-override-perl{a} libthai-data{a} libthai0{a} libtiff6{a} libtool{a} libuchardet0{a} libwebp7{a} libx11-6{a} libx11-data{a} libx11-xcb1{a} libxau6{a} libxcb-dri2-0{a} libxcb-dri3-0{a} libxcb-glx0{a} libxcb-present0{a} libxcb-randr0{a} libxcb-render0{a} libxcb-shm0{a} libxcb-sync1{a} libxcb-xfixes0{a} libxcb1{a} libxcomposite1{a} libxcursor1{a} libxdamage1{a} libxdmcp6{a} libxext6{a} libxfixes3{a} libxi6{a} libxinerama1{a} libxml2{a} libxrandr2{a} libxrender1{a} libxshmfence1{a} libxtst6{a} libxxf86vm1{a} libz3-4{a} m4{a} man-db{a} media-types{a} miniasm{a} ncbi-blast+{a} ncbi-data{a} ncbi-vdb-data{a} openjdk-17-jdk{a} openjdk-17-jdk-headless{a} openjdk-17-jre{a} openjdk-17-jre-headless{a} openssl{a} pilon{a} po-debconf{a} python3{a} python3-all{a} python3-distutils{a} python3-lib2to3{a} python3-minimal{a} python3-pkg-resources{a} python3-setuptools{a} python3.11{a} python3.11-minimal{a} racon{a} readline-common{a} samtools{a} scala-library{a} sensible-utils{a} shared-mime-info{a} unzip{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: alsa-topology-conf alsa-ucm-conf curl dbus fonts-dejavu-extra libarchive-cpio-perl libatk-wrapper-java-jni libgail-common libgdk-pixbuf2.0-bin libglib2.0-data libgpm2 libgtk2.0-bin libldap-common libltdl-dev libmail-sendmail-perl librsvg2-common libsasl2-modules libxt-dev lynx minimap publicsuffix rampler wget xdg-user-dirs 0 packages upgraded, 199 newly installed, 0 to remove and 0 not upgraded. Need to get 243 MB of archives. After unpacking 776 MB will be used. Abort. E: pbuilder-satisfydepends failed. I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/468049 and its subdirectories unicycler failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/unicycler_0.5.0+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/unicycler_0.5.0+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build1.log.gz' Fri Nov 22 16:44:28 UTC 2024 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 75.0% -- replaced with stdout Fri Nov 22 16:44:28 UTC 2024 W: Downloading the build dependencies failed Fri Nov 22 16:44:28 UTC 2024 W: Maybe there was a network problem, or the build dependencies are currently uninstallable; consider filing a bug in the last case. Fri Nov 22 16:44:28 UTC 2024 W: Network problems are automatically rescheduled after some hours. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 16:44:29] INFO: Starting at 2024-11-22 16:44:29.508653 [2024-11-22 16:44:29] INFO: Generating the pages of 1 package(s) [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] CRITICAL: https://tests.reproducible-builds.org/debian/bookworm/arm64/unicycler didn't produce a buildlog, even though it has been built. [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:30] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:30] INFO: Finished at 2024-11-22 16:44:30.756082, took: 0:00:01.247434 Fri Nov 22 16:44:30 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/bookworm/arm64/unicycler.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/unicycler_0.5.0+dfsg-1.rbuild.log: 71.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/bookworm/arm64/unicycler_0.5.0+dfsg-1.rbuild.log.gz [2024-11-22 16:44:31] INFO: Starting at 2024-11-22 16:44:31.157916 [2024-11-22 16:44:31] INFO: Generating the pages of 1 package(s) [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/unicycler_0.5.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/unicycler_0.5.0+dfsg-1.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:32] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/unicycler_0.4.8+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/unicycler_0.4.8+dfsg-2.diff.gz is missing [2024-11-22 16:44:32] INFO: Finished at 2024-11-22 16:44:32.652625, took: 0:00:01.494716 All cleanup done. Fri Nov 22 16:44:32 UTC 2024 - total duration: 0h 0m 30s. Fri Nov 22 16:44:32 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Wj0bskRF, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 34.545s CPU time consumed: 6.571s