Running as unit: rb-build-arm64_19-54323.service ==================================================================================== Tue Jan 21 10:55:35 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_19) on jenkins, called using "codethink02-arm64 codethink03-arm64" as arguments. Tue Jan 21 10:55:35 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IxwB4lzU" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 10:55:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Tue Jan 21 10:55:35 UTC 2025 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-oC3gxi' Tue Jan 21 10:55:36 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Jan 21 10:55:36 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Vpez2e' ok, let's check if lambda-align is building anywhere yet… ok, lambda-align is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of lambda-align in experimental on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Tue Jan 21 10:55:50 UTC 2025 I: starting to build lambda-align/experimental/arm64 on jenkins on '2025-01-21 10:55' Tue Jan 21 10:55:50 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_19/54323/console.log 1737456950 arm64 experimental lambda-align Tue Jan 21 10:55:50 UTC 2025 I: Downloading source for experimental/lambda-align=1.0.3-7 --2025-01-21 10:55:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2114 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align_1.0.3-7.dsc’ 0K .. 100% 326M=0s 2025-01-21 10:55:50 (326 MB/s) - ‘lambda-align_1.0.3-7.dsc’ saved [2114/2114] --2025-01-21 10:55:50-- http://cdn-fastly.deb.debian.org/debian/pool/main/l/lambda-align/lambda-align_1.0.3-7.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2114 (2.1K) [text/prs.lines.tag] Saving to: ‘lambda-align_1.0.3-7.dsc’ 0K .. 100% 326M=0s 2025-01-21 10:55:50 (326 MB/s) - ‘lambda-align_1.0.3-7.dsc’ saved [2114/2114] Tue Jan 21 10:55:50 UTC 2025 I: lambda-align_1.0.3-7.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: lambda-align Binary: lambda-align Architecture: any Version: 1.0.3-7 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://seqan.github.io/lambda Standards-Version: 4.3.0 Vcs-Browser: https://salsa.debian.org/med-team/lambda-align Vcs-Git: https://salsa.debian.org/med-team/lambda-align.git Testsuite: autopkgtest Testsuite-Triggers: cmake, coreutils, diffutils, gzip, openssl Build-Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl Package-List: lambda-align deb science optional arch=any Checksums-Sha1: abf40a7204b2c249152a7e4275c6adb3628fe8cf 322730 lambda-align_1.0.3.orig.tar.gz 1f117086fb79234766d5c0248a8caf9d4b208686 12556 lambda-align_1.0.3-7.debian.tar.xz Checksums-Sha256: 324f90dbc095c56792a77a002e64a98465a4853f74a141a1182e7a6f540545a2 322730 lambda-align_1.0.3.orig.tar.gz 72be7800caa6eed49613d57f24bdc83d94b78b6b697e87ee3429d3b536aea076 12556 lambda-align_1.0.3-7.debian.tar.xz Files: b18d7c968b8c52851c8037dfc8066bce 322730 lambda-align_1.0.3.orig.tar.gz ef14ca5311cb433e7ed8f0644c518b16 12556 lambda-align_1.0.3-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdG6WEACgkQPCZ2P2xn 5uKivQ//bnBnY7TnHhnGqVxMcM9eiYX3M6rR5EXY7E9DdAlTtHtVPzlmhT91aN/7 JnWpvPr5/ddqBbIiMlEJ4qX+dHLhbfwaRGkIW4IK1y1iMLn40j9ocBSWDGba4BXd Yy2QoHfQ7X5TLGusUuyg6Z/XbQa8zA0IY8UMqfnRc0+wp8H1Ux1DMxejzDJvTeWw Df4JD3FIOOdP9R+zS9mSHVFi+Ok6lRIlWshxEcmFV3cZtgd6S9U9LUyTS6BEEHmA 2Y8/nkM9K8kbgLyg3/JQdwJwE8PNH0E1PUoP4dPXv4+ak2N56kYctgwGXMEGFMDt 6eh7yHepx2gqMRH2eFUhoTKNBjXxvFNQVBP7GdiSM1ZKtVaELDwAZYg7yMst4qGa LJ6aQo4kDPEWyDwCYtsVMe7G1nwqlUgFZQHRPSmgJDWP+k3KozrOnpERKImXlfi5 2neSX00UKTaZRD78gn1AzF79XfJXaWtA55l/Nqb7NY5oP5DCyPlp+M+KVBczumV7 A20Sn4LnI2WuJxzVsf3+NQUN4OzlfgwQJNK48zQXVKydF+6OcWzcFgeuX6TlssMd XARdVoBgr9Uva+YUZScRzX6SPLK3sJrSsuhlUjFOWrrXI7b8O432ABQXbVMxPws8 CPoYUO3ZmUBdUOgYx5Ti/tXGY/3W8XgcfhB2dDSuJTmmjljkm2w= =aWmN -----END PGP SIGNATURE----- Tue Jan 21 10:55:50 UTC 2025 I: Checking whether the package is not for us Tue Jan 21 10:55:50 UTC 2025 I: Starting 1st build on remote node codethink02-arm64.debian.net. Tue Jan 21 10:55:50 UTC 2025 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Tue Jan 21 10:55:50 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Tue Jan 21 10:55:50 UTC 2025 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ucqImH' ==================================================================================== Tue Jan 21 10:55:51 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 lambda-align experimental /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc 1.0.3-7" as arguments. Tue Jan 21 10:55:51 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-eZNsCDkJ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Jan 21 10:55:52 UTC 2025 I: Downloading source for experimental/lambda-align=1.0.3-7 Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (2411 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (2411 kB/s) Download complete and in download only mode ============================================================================= Building lambda-align in experimental on arm64 on codethink02-arm64 now. Date: Tue Jan 21 10:55:52 GMT 2025 Date UTC: Tue Jan 21 10:55:52 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 20 22:55:52 -12 2025 I: pbuilder-time-stamp: 1737456952 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: unsupported subcommand dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7563b5c24948484eafd27ad8c3bd1fe1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='398091' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_ME9r --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 151 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 164 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 61 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] 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I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (3.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 12 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.53 sec Start 13: test_search_blastn_sa_m9 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.52 sec Start 14: test_search_blastn_sa_sam 3/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.52 sec Start 15: test_search_blastn_sa_bam 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.59 sec Start 16: test_search_blastn_sa_m9.gz 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.76 sec Start 17: test_search_blastn_sa_sam.bz2 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.79 sec Start 18: test_search_blastn_fm_m0 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.21 sec Start 19: test_search_blastn_fm_m8 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.25 sec Start 20: test_search_blastn_fm_m9 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.65 sec Start 21: test_search_blastn_fm_sam 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.77 sec Start 22: test_search_blastn_fm_bam 11/80 Test #13: test_search_blastn_sa_m9 ......... Passed 5.76 sec Start 23: test_search_blastn_fm_m9.gz 12/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.49 sec Start 24: test_search_blastn_fm_sam.bz2 13/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.62 sec Start 25: test_search_blastp_sa_m0 14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 6.84 sec Start 26: test_search_blastp_sa_m8 15/80 Test #15: test_search_blastn_sa_bam ........ Passed 6.59 sec Start 27: test_search_blastp_sa_m9 16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.78 sec Start 28: test_search_blastp_sa_sam 17/80 Test #14: test_search_blastn_sa_sam ........ Passed 7.00 sec Start 29: test_search_blastp_sa_bam 18/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.46 sec Start 30: test_search_blastp_sa_m9.gz 19/80 Test #18: test_search_blastn_fm_m0 ......... Passed 7.25 sec Start 31: test_search_blastp_sa_sam.bz2 20/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.47 sec Start 32: test_search_blastp_fm_m0 21/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.08 sec Start 33: test_search_blastp_fm_m8 22/80 Test #11: test_search_blastn_sa_m0 ......... Passed 8.38 sec Start 34: test_search_blastp_fm_m9 23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.58 sec Start 35: test_search_blastp_fm_sam 24/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.76 sec Start 36: test_search_blastp_fm_bam 25/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.43 sec Start 37: test_search_blastp_fm_m9.gz 26/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.87 sec Start 38: test_search_blastp_fm_sam.bz2 27/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.71 sec Start 39: test_search_blastx_sa_m0 28/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.07 sec Start 40: test_search_blastx_sa_m8 29/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.58 sec Start 41: test_search_blastx_sa_m9 30/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 8.74 sec Start 42: test_search_blastx_sa_sam 31/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.96 sec Start 43: test_search_blastx_sa_bam 32/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.00 sec Start 44: test_search_blastx_sa_m9.gz 33/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.90 sec Start 45: test_search_blastx_sa_sam.bz2 34/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.88 sec Start 46: test_search_blastx_fm_m0 35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.22 sec Start 47: test_search_blastx_fm_m8 36/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.04 sec Start 48: test_search_blastx_fm_m9 37/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.12 sec Start 49: test_search_blastx_fm_sam 38/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.20 sec Start 50: test_search_blastx_fm_bam 39/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.67 sec Start 51: test_search_blastx_fm_m9.gz 40/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.80 sec Start 52: test_search_blastx_fm_sam.bz2 41/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.96 sec Start 53: test_search_tblastn_sa_m0 42/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.54 sec Start 54: test_search_tblastn_sa_m8 43/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.54 sec Start 55: test_search_tblastn_sa_m9 44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 6.19 sec Start 56: test_search_tblastn_sa_sam 45/80 Test #41: test_search_blastx_sa_m9 ......... Passed 6.23 sec Start 57: test_search_tblastn_sa_bam 46/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 6.02 sec Start 58: test_search_tblastn_sa_m9.gz 47/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 9.18 sec Start 59: test_search_tblastn_sa_sam.bz2 48/80 Test #42: test_search_blastx_sa_sam ........ Passed 6.14 sec Start 60: test_search_tblastn_fm_m0 49/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.53 sec Start 61: test_search_tblastn_fm_m8 50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 3.14 sec Start 62: test_search_tblastn_fm_m9 51/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.33 sec Start 63: test_search_tblastn_fm_sam 52/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.92 sec Start 64: test_search_tblastn_fm_bam 53/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.94 sec Start 65: test_search_tblastn_fm_m9.gz 54/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 8.24 sec Start 66: test_search_tblastn_fm_sam.bz2 55/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.67 sec Start 67: test_search_tblastx_sa_m0 56/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.73 sec Start 68: test_search_tblastx_sa_m8 57/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 3.31 sec Start 69: test_search_tblastx_sa_m9 58/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 3.07 sec Start 70: test_search_tblastx_sa_sam 59/80 Test #57: test_search_tblastn_sa_bam ....... Passed 3.91 sec Start 71: test_search_tblastx_sa_bam 60/80 Test #56: test_search_tblastn_sa_sam ....... Passed 4.09 sec Start 72: test_search_tblastx_sa_m9.gz 61/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.75 sec Start 73: test_search_tblastx_sa_sam.bz2 62/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 4.67 sec Start 74: test_search_tblastx_fm_m0 63/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 5.06 sec Start 75: test_search_tblastx_fm_m8 64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 3.23 sec Start 76: test_search_tblastx_fm_m9 65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 3.03 sec Start 77: test_search_tblastx_fm_sam 66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 4.67 sec Start 78: test_search_tblastx_fm_bam 67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 5.76 sec Start 79: test_search_tblastx_fm_m9.gz 68/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 9.68 sec Start 80: test_search_tblastx_fm_sam.bz2 69/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 9.88 sec 70/80 Test #77: test_search_tblastx_fm_sam ....... Passed 10.19 sec 71/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 10.97 sec 72/80 Test #71: test_search_tblastx_sa_bam ....... Passed 13.20 sec 73/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 16.26 sec 74/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 16.43 sec 75/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 16.92 sec 76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 17.00 sec 77/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 16.55 sec 78/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.58 sec 79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 22.45 sec 80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.45 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 44.82 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j12 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build [ 50%] Built target lambda make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_arm64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/398091 and its subdirectories I: Current time: Mon Jan 20 23:03:15 -12 2025 I: pbuilder-time-stamp: 1737457395 Tue Jan 21 11:03:15 UTC 2025 I: Signing ./b1/lambda-align_1.0.3-7_arm64.buildinfo as lambda-align_1.0.3-7_arm64.buildinfo.asc Tue Jan 21 11:03:15 UTC 2025 I: Signed ./b1/lambda-align_1.0.3-7_arm64.buildinfo as ./b1/lambda-align_1.0.3-7_arm64.buildinfo.asc Tue Jan 21 11:03:15 UTC 2025 - build #1 for lambda-align/experimental/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Tue Jan 21 11:03:15 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-eZNsCDkJ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 11:03 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 10:55 b2 -rw-r--r-- 1 jenkins jenkins 2114 Nov 27 09:45 lambda-align_1.0.3-7.dsc -rw------- 1 jenkins jenkins 3278 Jan 21 10:55 rbuildlog.XiJq2Ox /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1: total 1840 -rw-r--r-- 1 jenkins jenkins 540085 Jan 21 11:03 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jan 21 11:03 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jan 21 11:03 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5784 Jan 21 11:03 lambda-align_1.0.3-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6666 Jan 21 11:03 lambda-align_1.0.3-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jan 21 11:03 lambda-align_1.0.3-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1295196 Jan 21 11:03 lambda-align_1.0.3-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jan 21 11:03 lambda-align_1.0.3-7_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2: total 0 Tue Jan 21 11:03:16 UTC 2025 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Mon Jan 20 22:55:52 -12 2025 I: pbuilder-time-stamp: 1737456952 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: unsupported subcommand dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7563b5c24948484eafd27ad8c3bd1fe1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='398091' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_ME9r --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 151 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 164 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 61 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 41.3 MB in 0s (117 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... 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Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../27-libgssapi-krb5-2_1.21.3-4_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-4) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../28-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../29-libidn2-0_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.7-2+b1) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../30-libsasl2-modules-db_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../31-libsasl2-2_2.1.28+dfsg1-8+b1_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8+b1) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../32-libldap2_2.6.9+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.9+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../33-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../34-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../35-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../36-libp11-kit0_0.25.5-3_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.5-3) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../37-libtasn1-6_4.19.0-3+b3_arm64.deb ... Unpacking libtasn1-6:arm64 (4.19.0-3+b3) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../38-libgnutls30t64_3.8.8-2_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.8-2) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../39-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../40-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../41-libcurl4t64_8.11.1-1+b1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.1-1+b1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../42-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../43-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... 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I: Building the package I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (3.3s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp [ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 12 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.53 sec Start 13: test_search_blastn_sa_m9 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.52 sec Start 14: test_search_blastn_sa_sam 3/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.52 sec Start 15: test_search_blastn_sa_bam 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.59 sec Start 16: test_search_blastn_sa_m9.gz 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.76 sec Start 17: test_search_blastn_sa_sam.bz2 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.79 sec Start 18: test_search_blastn_fm_m0 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.21 sec Start 19: test_search_blastn_fm_m8 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.25 sec Start 20: test_search_blastn_fm_m9 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.65 sec Start 21: test_search_blastn_fm_sam 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.77 sec Start 22: test_search_blastn_fm_bam 11/80 Test #13: test_search_blastn_sa_m9 ......... Passed 5.76 sec Start 23: test_search_blastn_fm_m9.gz 12/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.49 sec Start 24: test_search_blastn_fm_sam.bz2 13/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.62 sec Start 25: test_search_blastp_sa_m0 14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 6.84 sec Start 26: test_search_blastp_sa_m8 15/80 Test #15: test_search_blastn_sa_bam ........ Passed 6.59 sec Start 27: test_search_blastp_sa_m9 16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.78 sec Start 28: test_search_blastp_sa_sam 17/80 Test #14: test_search_blastn_sa_sam ........ Passed 7.00 sec Start 29: test_search_blastp_sa_bam 18/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.46 sec Start 30: test_search_blastp_sa_m9.gz 19/80 Test #18: test_search_blastn_fm_m0 ......... Passed 7.25 sec Start 31: test_search_blastp_sa_sam.bz2 20/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.47 sec Start 32: test_search_blastp_fm_m0 21/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.08 sec Start 33: test_search_blastp_fm_m8 22/80 Test #11: test_search_blastn_sa_m0 ......... Passed 8.38 sec Start 34: test_search_blastp_fm_m9 23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.58 sec Start 35: test_search_blastp_fm_sam 24/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.76 sec Start 36: test_search_blastp_fm_bam 25/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.43 sec Start 37: test_search_blastp_fm_m9.gz 26/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.87 sec Start 38: test_search_blastp_fm_sam.bz2 27/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.71 sec Start 39: test_search_blastx_sa_m0 28/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.07 sec Start 40: test_search_blastx_sa_m8 29/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.58 sec Start 41: test_search_blastx_sa_m9 30/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 8.74 sec Start 42: test_search_blastx_sa_sam 31/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.96 sec Start 43: test_search_blastx_sa_bam 32/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.00 sec Start 44: test_search_blastx_sa_m9.gz 33/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.90 sec Start 45: test_search_blastx_sa_sam.bz2 34/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.88 sec Start 46: test_search_blastx_fm_m0 35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.22 sec Start 47: test_search_blastx_fm_m8 36/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.04 sec Start 48: test_search_blastx_fm_m9 37/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.12 sec Start 49: test_search_blastx_fm_sam 38/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.20 sec Start 50: test_search_blastx_fm_bam 39/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.67 sec Start 51: test_search_blastx_fm_m9.gz 40/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.80 sec Start 52: test_search_blastx_fm_sam.bz2 41/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.96 sec Start 53: test_search_tblastn_sa_m0 42/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.54 sec Start 54: test_search_tblastn_sa_m8 43/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.54 sec Start 55: test_search_tblastn_sa_m9 44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 6.19 sec Start 56: test_search_tblastn_sa_sam 45/80 Test #41: test_search_blastx_sa_m9 ......... Passed 6.23 sec Start 57: test_search_tblastn_sa_bam 46/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 6.02 sec Start 58: test_search_tblastn_sa_m9.gz 47/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 9.18 sec Start 59: test_search_tblastn_sa_sam.bz2 48/80 Test #42: test_search_blastx_sa_sam ........ Passed 6.14 sec Start 60: test_search_tblastn_fm_m0 49/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.53 sec Start 61: test_search_tblastn_fm_m8 50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 3.14 sec Start 62: test_search_tblastn_fm_m9 51/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.33 sec Start 63: test_search_tblastn_fm_sam 52/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.92 sec Start 64: test_search_tblastn_fm_bam 53/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.94 sec Start 65: test_search_tblastn_fm_m9.gz 54/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 8.24 sec Start 66: test_search_tblastn_fm_sam.bz2 55/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.67 sec Start 67: test_search_tblastx_sa_m0 56/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.73 sec Start 68: test_search_tblastx_sa_m8 57/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 3.31 sec Start 69: test_search_tblastx_sa_m9 58/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 3.07 sec Start 70: test_search_tblastx_sa_sam 59/80 Test #57: test_search_tblastn_sa_bam ....... Passed 3.91 sec Start 71: test_search_tblastx_sa_bam 60/80 Test #56: test_search_tblastn_sa_sam ....... Passed 4.09 sec Start 72: test_search_tblastx_sa_m9.gz 61/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.75 sec Start 73: test_search_tblastx_sa_sam.bz2 62/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 4.67 sec Start 74: test_search_tblastx_fm_m0 63/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 5.06 sec Start 75: test_search_tblastx_fm_m8 64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 3.23 sec Start 76: test_search_tblastx_fm_m9 65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 3.03 sec Start 77: test_search_tblastx_fm_sam 66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 4.67 sec Start 78: test_search_tblastx_fm_bam 67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 5.76 sec Start 79: test_search_tblastx_fm_m9.gz 68/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 9.68 sec Start 80: test_search_tblastx_fm_sam.bz2 69/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 9.88 sec 70/80 Test #77: test_search_tblastx_fm_sam ....... Passed 10.19 sec 71/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 10.97 sec 72/80 Test #71: test_search_tblastx_sa_bam ....... Passed 13.20 sec 73/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 16.26 sec 74/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 16.43 sec 75/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 16.92 sec 76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 17.00 sec 77/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 16.55 sec 78/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.58 sec 79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 22.45 sec 80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.45 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 44.82 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j12 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build [ 50%] Built target lambda make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_arm64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/398091 and its subdirectories I: Current time: Mon Jan 20 23:03:15 -12 2025 I: pbuilder-time-stamp: 1737457395 Tue Jan 21 11:03:17 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Jan 21 11:03:17 UTC 2025 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Jan 21 11:03:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Jan 21 11:03:17 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-kveZrI' ==================================================================================== Mon Feb 23 17:26:18 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 lambda-align experimental /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc 1.0.3-7" as arguments. Mon Feb 23 17:26:18 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-onrztPKv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Feb 23 17:26:18 UTC 2026 I: Downloading source for experimental/lambda-align=1.0.3-7 Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (17.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'lambda-align' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/lambda-align.git Please use: git clone https://salsa.debian.org/med-team/lambda-align.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 337 kB of source archives. Get:1 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (dsc) [2114 B] Get:2 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (tar) [323 kB] Get:3 http://deb.debian.org/debian experimental/main lambda-align 1.0.3-7 (diff) [12.6 kB] Fetched 337 kB in 0s (17.7 MB/s) Download complete and in download only mode ============================================================================= Re-Building lambda-align in experimental on arm64 on codethink03-arm64 now. Date: Mon Feb 23 17:26:18 GMT 2026 Date UTC: Mon Feb 23 17:26:18 UTC 2026 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_2vp0 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' lambda-align = debian-installer -o lambda-align = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' lambda-align = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_2vp0 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Feb 24 07:26:18 +14 2026 I: pbuilder-time-stamp: 1771867578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [lambda-align_1.0.3-7.dsc] I: copying [./lambda-align_1.0.3.orig.tar.gz] I: copying [./lambda-align_1.0.3-7.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./lambda-align_1.0.3-7.dsc: unsupported subcommand dpkg-source: info: extracting lambda-align in lambda-align-1.0.3 dpkg-source: info: unpacking lambda-align_1.0.3.orig.tar.gz dpkg-source: info: unpacking lambda-align_1.0.3-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying set-seqan-cmake-dir.patch dpkg-source: info: applying force-link-rt-pthread.patch dpkg-source: info: applying 0003-Upgrade-to-SeqAn-2.5.0.patch dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 23 17:26 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=experimental EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=44f933dae07746a1992647b18e6e9465 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1691083 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_2vp0 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper (>= 12~), libseqan2-dev (= 2.5.0~rc3+dfsg-1), cmake, zlib1g-dev, libbz2-dev, openssl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper (>= 12~); however: Package debhelper is not installed. pbuilder-satisfydepends-dummy depends on libseqan2-dev (= 2.5.0~rc3+dfsg-1); however: Package libseqan2-dev is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on openssl; however: Package openssl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 62 newly installed, 0 to remove and 0 not upgraded. Need to get 40.1 MB of archives. After unpacking 151 MB will be used. The following packages have unmet dependencies: pbuilder-satisfydepends-dummy : Depends: libseqan2-dev (= 2.5.0~rc3+dfsg-1) but it is not going to be installed The following actions will resolve these dependencies: Install the following packages: 1) libseqan2-dev [2.5.0~rc3+dfsg-1 (experimental)] The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgnutls30t64{a} libgssapi-krb5-2{a} libicu72{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libseqan2-dev{a} libssh2-1t64{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} openssl{a} po-debconf{a} procps{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 41.3 MB of archives. After unpacking 164 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.4-2 [2267 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-4 [32.2 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-4 [81.5 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 27 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-4 [308 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-4 [127 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.7-2+b1 [127 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8+b1 [20.3 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8+b1 [55.7 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-1 [179 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.19.0-3+b3 [46.9 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.8-2 [1363 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.1-1+b1 [324 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.4-2 [9898 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-2 [539 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.1 [920 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 61 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 41.3 MB in 0s (158 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../00-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../01-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../02-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../03-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../04-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../05-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../07-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../08-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../09-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../10-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../11-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../12-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../13-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../14-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../15-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../16-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../17-cmake-data_3.31.4-2_all.deb ... Unpacking cmake-data (3.31.4-2) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../18-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../19-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../20-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../21-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../22-libkrb5support0_1.21.3-4_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-4) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../23-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../24-libk5crypto3_1.21.3-4_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-4) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../25-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../26-libkrb5-3_1.21.3-4_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-4) ... 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I: Building the package I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for experimental I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --builddirectory=build debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' rm -f *.1 dh_auto_clean -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_autoreconf_clean -O--builddirectory=build dh_clean -O--builddirectory=build debian/rules binary dh binary --builddirectory=build dh_update_autotools_config -O--builddirectory=build dh_autoreconf -O--builddirectory=build debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_configure -- -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DLAMBDA_NATIVE_BUILD=OFF -DLAMBDA_MMAPPED_DB=ON -DCMAKE_BUILD_TYPE=Release .. CMake Deprecation Warning at CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. Compiler Detection -- The CXX compiler identification is GNU 14.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done Dependency detection -- These dependencies where found: OPENMP TRUE -fopenmp ZLIB TRUE 1.3.1 BZIP2 TRUE 1.0.8 SEQAN TRUE 2.5.0 -- The requirements where met. Build configuration -- LAMBDA version is: 1.0.2 -- The following options are selected for the build: LAMBDA_FASTBUILD OFF LAMBDA_LINGAPS_OPT OFF LAMBDA_MMAPPED_DB ON LAMBDA_NATIVE_BUILD OFF LAMBDA_STATIC_BUILD OFF -- Run 'cmake -LH' to get a comment on each option. -- Remove CMakeCache.txt and re-run cmake with -DOPTIONNAME=ON|OFF to change an option. Setting up unit tests CMake Deprecation Warning at tests/CMakeLists.txt:5 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value. Or, use the ... syntax to tell CMake that the project requires at least but has been updated to work with policies introduced by or earlier. -- Configuring done (3.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LIBDIR CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/lambda-align-1.0.3/build make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_auto_build -O--builddirectory=build cd build && make -j12 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake 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src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o [ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /usr/include/seqan/basic/debug_test_system.h:150, from /usr/include/seqan/basic/basic_debug.h:52, from /usr/include/seqan/basic.h:49, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:22: /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:145:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 145 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:34: /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:79:19: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 79 | public ::std::binary_function < TSav, TSav, bool > | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:22: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/seqan/blast.h:64, from /build/reproducible-path/lambda-align-1.0.3/src/output.hpp:25, from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:31: /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:168:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 168 | return argConv3(options, | ~~~~~~~~^~~~~~~~~ 169 | TOutFormat(), | ~~~~~~~~~~~~~ 170 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 | BlastProgramSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 | Dna5()); | ~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score >; BlastProgram p = seqan2::BlastProgram::BLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:145:24: required from here 145 | return argConv1(options, BlastReport(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::NO_COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:147:24: required from here 147 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::NO_COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTP, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTP]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:175:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 175 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 176 | TOutFormat(), | ~~~~~~~~~~~~~ 177 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTP; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::BLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::BLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:180:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 180 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 181 | TOutFormat(), | ~~~~~~~~~~~~~ 182 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 183 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::BLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTN, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTN]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:186:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 186 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 187 | TOutFormat(), | ~~~~~~~~~~~~~ 188 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 189 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTN; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:219:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 219 | return argConv3(options, TOutFormat(), Th(), Tp(), AminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::IndexSa<>, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::IndexSa<>; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:316:35: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 316 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 317 | TOutFormat(), | ~~~~~~~~~~~~~ 318 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 320 | TRedAlph(), | ~~~~~~~~~~~ 321 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp: In instantiation of 'int computeBlastMatch(TBlastMatch&, const typename TLocalHolder::TMatch&, TLocalHolder&) [with TBlastMatch = seqan2::BlastMatch, seqan2::Alloc<> >, seqan2::InfixSegment>, seqan2::Tag >, seqan2::Gaps, seqan2::MMap<> >, seqan2::InfixSegment>, seqan2::Tag >, unsigned int, seqan2::Segment >, seqan2::InfixSegment>, seqan2::Segment >, seqan2::InfixSegment>, std::vector >, seqan2::String > >; TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >; typename TLocalHolder::TMatch = Match > > >]': /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1513:45: required from 'int iterateMatches(TLocalHolder&) [with TLocalHolder = LocalDataHolder > >, seqan2::FMIndex, seqan2::Tag, seqan2::BlastProgram::TBLASTX, seqan2::BlastTabularSpec::COMMENTS>, seqan2::Tag >]' 1513 | int lret = computeBlastMatch(bm, *it, lH); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:462:33: required from 'int realMain(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TIndexSpec = seqan2::FMIndex; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; TOutFormat = seqan2::Tag; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 462 | res = iterateMatches(localHolder); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:323:36: required from 'int argConv4(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&, const TScoreExtension&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; TScoreExtension = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 323 | return realMain>(options, | ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~ 324 | TOutFormat(), | ~~~~~~~~~~~~~ 325 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 327 | TRedAlph(), | ~~~~~~~~~~~ 328 | TScoreExtension()); | ~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:266:24: required from 'int argConv3(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&, const TRedAlph&) [with TOutFormat = seqan2::Tag; TRedAlph = seqan2::SimpleType > >; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 266 | return argConv4(options, | ~~~~~~~~^~~~~~~~~ 267 | TOutFormat(), | ~~~~~~~~~~~~~ 268 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 269 | BlastProgramSelector

(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~ 270 | TRedAlph(), | ~~~~~~~~~~~ 271 | AffineGaps()); | ~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:221:28: required from 'int argConv2(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&, const seqan2::BlastProgramSelector

&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS; seqan2::BlastProgram p = seqan2::BlastProgram::TBLASTX]' 221 | return argConv3(options, TOutFormat(), Th(), Tp(), ReducedAminoAcid()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:191:28: required from 'int argConv1(const LambdaOptions&, const TOutFormat&, const seqan2::BlastTabularSpecSelector&) [with TOutFormat = seqan2::Tag; seqan2::BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' 191 | return argConv2(options, | ~~~~~~~~^~~~~~~~~ 192 | TOutFormat(), | ~~~~~~~~~~~~~ 193 | BlastTabularSpecSelector(), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 194 | BlastProgramSelector()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:149:24: required from here 149 | return argConv1(options, BlastTabular(), BlastTabularSpecSelector()); | ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/lambda.hpp:1282:22: warning: 'double seqan2::computeEValue(TBlastMatch&, BlastIOContext&) [with TBlastMatch = BlastMatch, Alloc<> >, InfixSegment>, Tag >, Gaps, MMap<> >, InfixSegment>, Tag >, unsigned int, Segment >, InfixSegment>, Segment >, InfixSegment>, std::vector >, String > >; TScore = Score, ScoreSpecSelectable> >; BlastProgram p = seqan2::BlastProgram::TBLASTX; BlastTabularSpec h = seqan2::BlastTabularSpec::COMMENTS]' is deprecated: Use the interface with an explicit query length parameter instead (use the record's member). [-Wdeprecated-declarations] 1282 | computeEValue(bm, context(lH.gH.outfile)); | ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/seqan/blast/blast_statistics.h:1176:1: note: declared here 1176 | computeEValue(TBlastMatch & match, | ^~~~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ /build/reproducible-path/lambda-align-1.0.3/src/options.hpp: In function 'void getCwd(TString&) [with TString = std::__cxx11::basic_string]': /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:173:11: warning: ignoring return value of 'char* getcwd(char*, size_t)' declared with attribute 'warn_unused_result' [-Wunused-result] 173 | getcwd(cwd, 1000); | ~~~~~~^~~~~~~~~~~ [ 75%] Linking CXX executable ../bin/lambda_indexer cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda_indexer.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:421:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:430:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:277:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'insertStream' at /usr/include/seqan/index/pipe_merger7.h:287:21: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'insertStream': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:18, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:11, inlined from '_toText' at /usr/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_toText': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7.h:341:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/index/pipe_merger3.h:127:17, inlined from 'operator++' at /usr/include/seqan/index/index_skew3.h:329:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_counter.h:90:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign.constprop.isra' at /usr/include/seqan/pipe/pool_base.h:1369:42: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'assign.constprop.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:50, inlined from 'pop' at /usr/include/seqan/misc/priority_type_heap.h:289:11, inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, inlined from 'append.isra' at /usr/include/seqan/pipe/pool_base.h:1330:13: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function 'append.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda_indexer.dir/link.d CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -o ../bin/lambda_indexer -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 75%] Built target lambda_indexer [100%] Linking CXX executable ../bin/lambda cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/cmake -E cmake_link_script CMakeFiles/lambda.dir/link.txt --verbose=1 In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators.isra' at /usr/include/seqan/index/find2_backtracking.h:707:0: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_popIterators.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_12BlastReport_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingIS11_S13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE0EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1L_ISX_SZ_EES17_EEE_EEvRNS1K_INS1L_IT_S1I_EENS1L_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ In function 'allocate', inlined from '_allocateStorage' at /usr/include/seqan/sequence/string_alloc.h:372:13, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1540:28, inlined from '_reallocateStorage' at /usr/include/seqan/sequence/string_base.h:1585:30, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1687:83, inlined from '_reserveStorage' at /usr/include/seqan/sequence/string_base.h:1673:1, inlined from 'reserve' at /usr/include/seqan/sequence/string_base.h:1705:20, inlined from 'resize_' at /usr/include/seqan/sequence/string_base.h:1733:45, inlined from 'resize' at /usr/include/seqan/sequence/string_base.h:1793:0, inlined from 'resize' at /usr/include/seqan/sequence/sequence_interface.h:1185:0, inlined from 'eraseBack' at /usr/include/seqan/sequence/sequence_interface.h:1295:0, inlined from '_popIterators' at /usr/include/seqan/index/find2_backtracking.h:707:0, inlined from '_pushState' at /usr/include/seqan/index/find2_backtracking.h:442:18, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1311:31, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1315:30, inlined from '_find' at /usr/include/seqan/index/find2_backtracking.h:1281:1, inlined from '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0' at /usr/include/seqan/index/find2_backtracking.h:1315:30: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ /usr/include/c++/14/new: In function '_ZN6seqan25_findINS_9StringSetINS_6StringINS_10SimpleTypeIhNS_5Dna5_EEENS_4MMapINS_10MMapConfigINS_4FileINS_5AsyncIvEEEEmEEEEEENS_5OwnerINS_12ConcatDirectIvEEEEEENS_7FMIndexIv19LambdaFMIndexConfigEENS1_INS_7SegmentINS2_IS5_NS_5AllocIvEEEENS_12InfixSegmentEEENSF_INS_3TagINS_8Default_EEEEEEENS_7IndexSaIvEENST_INS_16HammingDistance_EEENST_INS_23BacktrackingSemiGlobal_EEENS_11StageExact_EZ19__searchDoubleIndexINS_12BacktrackingINST_INS_9TagExact_EEES13_EE15LocalDataHolderI16GlobalDataHolderIS5_SM_NST_INS_13BlastTabular_EEELNS_12BlastProgramE0ELNS_16BlastTabularSpecE1EENST_INS_11AffineGaps_EEEEEvRT0_EUlRKNS_7Finder_INS_5IndexISJ_SM_EENS1N_ISX_SZ_EENS16_IS11_S13_EEEEE_EEvRNS1M_INS1N_IT_S1K_EENS1N_IT1_T2_EENS16_IT3_T4_EEEERT6_RKT5_.part.0': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ /usr/bin/c++ -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -Wl,-z,relro -Wl,-z,now -rdynamic -Wl,--dependency-file=CMakeFiles/lambda.dir/link.d CMakeFiles/lambda.dir/lambda.cpp.o -o ../bin/lambda -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive -lz -lbz2 -lrt -lpthread -lz -lbz2 -lpthread -lgomp -Wl,-Bstatic -lpthread -Wl,-Bdynamic make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [100%] Built target lambda make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' cd build/tests && ctest --parallel 12 Test project /build/reproducible-path/lambda-align-1.0.3/build/tests Start 1: test_mkindex_blastn_sa Start 2: test_mkindex_blastn_fm Start 3: test_mkindex_blastp_sa Start 4: test_mkindex_blastp_fm Start 5: test_mkindex_blastx_sa Start 6: test_mkindex_blastx_fm Start 7: test_mkindex_tblastn_sa Start 8: test_mkindex_tblastn_fm Start 9: test_mkindex_tblastx_sa Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.38 sec Start 13: test_search_blastn_sa_m9 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.42 sec Start 14: test_search_blastn_sa_sam 3/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.50 sec Start 15: test_search_blastn_sa_bam 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.48 sec Start 16: test_search_blastn_sa_m9.gz 5/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.49 sec Start 17: test_search_blastn_sa_sam.bz2 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.67 sec Start 18: test_search_blastn_fm_m0 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.07 sec Start 19: test_search_blastn_fm_m8 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.09 sec Start 20: test_search_blastn_fm_m9 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.23 sec Start 21: test_search_blastn_fm_sam 10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.24 sec Start 22: test_search_blastn_fm_bam 11/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.91 sec Start 23: test_search_blastn_fm_m9.gz 12/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.63 sec Start 24: test_search_blastn_fm_sam.bz2 13/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.79 sec Start 25: test_search_blastp_sa_m0 14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.18 sec Start 26: test_search_blastp_sa_m8 15/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.94 sec Start 27: test_search_blastp_sa_m9 16/80 Test #14: test_search_blastn_sa_sam ........ Passed 4.17 sec Start 28: test_search_blastp_sa_sam 17/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.37 sec Start 29: test_search_blastp_sa_bam 18/80 Test #11: test_search_blastn_sa_m0 ......... Passed 4.71 sec Start 30: test_search_blastp_sa_m9.gz 19/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.82 sec Start 31: test_search_blastp_sa_sam.bz2 20/80 Test #19: test_search_blastn_fm_m8 ......... Passed 4.12 sec Start 32: test_search_blastp_fm_m0 21/80 Test #20: test_search_blastn_fm_m9 ......... Passed 4.09 sec Start 33: test_search_blastp_fm_m8 22/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.31 sec Start 34: test_search_blastp_fm_m9 23/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 5.24 sec Start 35: test_search_blastp_fm_sam 24/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.26 sec Start 36: test_search_blastp_fm_bam 25/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.30 sec Start 37: test_search_blastp_fm_m9.gz 26/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.22 sec Start 38: test_search_blastp_fm_sam.bz2 27/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.99 sec Start 39: test_search_blastx_sa_m0 28/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.98 sec Start 40: test_search_blastx_sa_m8 29/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.53 sec Start 41: test_search_blastx_sa_m9 30/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.47 sec Start 42: test_search_blastx_sa_sam 31/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.87 sec Start 43: test_search_blastx_sa_bam 32/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.98 sec Start 44: test_search_blastx_sa_m9.gz 33/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.86 sec Start 45: test_search_blastx_sa_sam.bz2 34/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.84 sec Start 46: test_search_blastx_fm_m0 35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.98 sec Start 47: test_search_blastx_fm_m8 36/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.56 sec Start 48: test_search_blastx_fm_m9 37/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.09 sec Start 49: test_search_blastx_fm_sam 38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 4.27 sec Start 50: test_search_blastx_fm_bam 39/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.07 sec Start 51: test_search_blastx_fm_m9.gz 40/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.04 sec Start 52: test_search_blastx_fm_sam.bz2 41/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.27 sec Start 53: test_search_tblastn_sa_m0 42/80 Test #40: test_search_blastx_sa_m8 ......... Passed 2.96 sec Start 54: test_search_tblastn_sa_m8 43/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.46 sec Start 55: test_search_tblastn_sa_m9 44/80 Test #39: test_search_blastx_sa_m0 ......... Passed 3.23 sec Start 56: test_search_tblastn_sa_sam 45/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.23 sec Start 57: test_search_tblastn_sa_bam 46/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.68 sec Start 58: test_search_tblastn_sa_m9.gz 47/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 3.58 sec Start 59: test_search_tblastn_sa_sam.bz2 48/80 Test #42: test_search_blastx_sa_sam ........ Passed 3.97 sec Start 60: test_search_tblastn_fm_m0 49/80 Test #41: test_search_blastx_sa_m9 ......... Passed 4.22 sec Start 61: test_search_tblastn_fm_m8 50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.39 sec Start 62: test_search_tblastn_fm_m9 51/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.18 sec Start 63: test_search_tblastn_fm_sam 52/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.05 sec Start 64: test_search_tblastn_fm_bam 53/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.68 sec 54/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.82 sec Start 65: test_search_tblastn_fm_m9.gz Start 66: test_search_tblastn_fm_sam.bz2 55/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.60 sec Start 67: test_search_tblastx_sa_m0 56/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 3.15 sec Start 68: test_search_tblastx_sa_m8 57/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.48 sec Start 69: test_search_tblastx_sa_m9 58/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.13 sec Start 70: test_search_tblastx_sa_sam 59/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.39 sec Start 71: test_search_tblastx_sa_bam 60/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.24 sec Start 72: test_search_tblastx_sa_m9.gz 61/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.57 sec Start 73: test_search_tblastx_sa_sam.bz2 62/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.79 sec Start 74: test_search_tblastx_fm_m0 63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.11 sec Start 75: test_search_tblastx_fm_m8 64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.59 sec Start 76: test_search_tblastx_fm_m9 65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.91 sec Start 77: test_search_tblastx_fm_sam 66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.57 sec Start 78: test_search_tblastx_fm_bam 67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.17 sec Start 79: test_search_tblastx_fm_m9.gz 68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.05 sec Start 80: test_search_tblastx_fm_sam.bz2 69/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 7.76 sec 70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.61 sec 71/80 Test #77: test_search_tblastx_fm_sam ....... Passed 6.80 sec 72/80 Test #71: test_search_tblastx_sa_bam ....... Passed 9.53 sec 73/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 11.02 sec 74/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 11.24 sec 75/80 Test #70: test_search_tblastx_sa_sam ....... Passed 11.46 sec 76/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 11.75 sec 77/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 5.55 sec 78/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 13.03 sec 79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 16.26 sec 80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 10.84 sec 100% tests passed, 0 tests failed out of 80 Total Test time (real) = 31.82 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build dh_prep -O--builddirectory=build dh_auto_install --destdir=debian/lambda-align/ -O--builddirectory=build cd build && make -j12 install DESTDIR=/build/reproducible-path/lambda-align-1.0.3/debian/lambda-align AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -S/build/reproducible-path/lambda-align-1.0.3 -B/build/reproducible-path/lambda-align-1.0.3/build --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles /build/reproducible-path/lambda-align-1.0.3/build//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' [ 50%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/bin/lambda_indexer -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-BSD.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/LICENSE-GPL3.rst -- Installing: /build/reproducible-path/lambda-align-1.0.3/debian/lambda-align/usr/share/doc/lambda/README.rst make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' dh_install find debian -name "LICENSE*.rst" -delete make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installdocs -O--builddirectory=build dh_installchangelogs -O--builddirectory=build debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/lambda-align-1.0.3' ./build/bin/lambda --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda.1 mkdir: cannot create directory '/nonexistent': Permission denied ./build/bin/lambda_indexer --export-help man \ | sed -r 's/(number of threads.*) Default:.*/\1/g' \ | sed -r 's/(defaults to working directory.*) Default:.*/\1/g' \ | sed -r 's/\(Git commit +\)//g' > lambda_indexer.1 mkdir: cannot create directory '/nonexistent': Permission denied dh_installman -- make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' dh_installinit -O--builddirectory=build dh_installsystemduser -O--builddirectory=build dh_perl -O--builddirectory=build dh_link -O--builddirectory=build dh_strip_nondeterminism -O--builddirectory=build dh_compress -O--builddirectory=build dh_fixperms -O--builddirectory=build dh_missing -O--builddirectory=build dh_dwz -O--builddirectory=build dwz: debian/lambda-align/usr/bin/lambda: .debug_info section not present dwz: debian/lambda-align/usr/bin/lambda_indexer: .debug_info section not present dwz: Too few files for multifile optimization dh_dwz: warning: No dwz multifile created, but not explicitly requested either so ignoring it. dh_dwz: warning: Common issues include no debug information at all (missing -g) and dh_dwz: warning: compressed debug information (#931891). dh_strip -O--builddirectory=build dh_makeshlibs -O--builddirectory=build dh_shlibdeps -O--builddirectory=build dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--builddirectory=build dh_gencontrol -O--builddirectory=build dh_md5sums -O--builddirectory=build dh_builddeb -O--builddirectory=build dpkg-deb: building package 'lambda-align' in '../lambda-align_1.0.3-7_arm64.deb'. dpkg-genbuildinfo --build=binary -O../lambda-align_1.0.3-7_arm64.buildinfo dpkg-genchanges --build=binary -O../lambda-align_1.0.3-7_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1691083 and its subdirectories I: Current time: Tue Feb 24 07:33:09 +14 2026 + false + set +x I: pbuilder-time-stamp: 1771867989 Mon Feb 23 17:33:09 UTC 2026 I: Signing ./b2/lambda-align_1.0.3-7_arm64.buildinfo as lambda-align_1.0.3-7_arm64.buildinfo.asc Mon Feb 23 17:33:09 UTC 2026 I: Signed ./b2/lambda-align_1.0.3-7_arm64.buildinfo as ./b2/lambda-align_1.0.3-7_arm64.buildinfo.asc Mon Feb 23 17:33:09 UTC 2026 - build #2 for lambda-align/experimental/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Mon Feb 23 17:33:09 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-onrztPKv, removing. /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc: total 548 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 11:03 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 21 11:10 b2 -rw-r--r-- 1 jenkins jenkins 2114 Nov 27 09:45 lambda-align_1.0.3-7.dsc -rw------- 1 jenkins jenkins 543664 Jan 21 11:03 rbuildlog.XiJq2Ox /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1: total 1848 -rw-r--r-- 1 jenkins jenkins 540085 Jan 21 11:03 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jan 21 11:03 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jan 21 11:03 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5784 Jan 21 11:03 lambda-align_1.0.3-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6666 Jan 21 11:03 lambda-align_1.0.3-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jan 21 11:03 lambda-align_1.0.3-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1295196 Jan 21 11:03 lambda-align_1.0.3-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jan 21 11:03 lambda-align_1.0.3-7_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2: total 1844 -rw-r--r-- 1 jenkins jenkins 542038 Jan 21 11:10 build.log -rw-r--r-- 1 jenkins jenkins 12556 Jan 21 11:10 lambda-align_1.0.3-7.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2114 Jan 21 11:10 lambda-align_1.0.3-7.dsc -rw-r--r-- 1 jenkins jenkins 5784 Jan 21 11:10 lambda-align_1.0.3-7_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6666 Jan 21 11:10 lambda-align_1.0.3-7_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1352 Jan 21 11:10 lambda-align_1.0.3-7_arm64.changes -rw-r--r-- 1 jenkins jenkins 1295196 Jan 21 11:10 lambda-align_1.0.3-7_arm64.deb -rw-r--r-- 1 jenkins jenkins 1516 Jan 21 11:10 lambda-align_1.0.3-7_source.changes Tue Jan 21 11:10:11 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Jan 21 11:10:12 UTC 2025 I: lambda-align_1.0.3-7_arm64.changes: Format: 1.8 Date: Wed, 27 Nov 2024 01:36:30 +0100 Source: lambda-align Binary: lambda-align Architecture: arm64 Version: 1.0.3-7 Distribution: experimental Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Enrico Seiler Description: lambda-align - Local Aligner for Massive Biological DatA Changes: lambda-align (1.0.3-7) experimental; urgency=medium . * Team upload. * d/control: Experimental rebuild using the 3rd release candidate of SeqAn 2.5.0 * Added patch for the explicit seqan2 namespace. * salsa ci: added * Remove dependency on libseqan-dev for tests * d/rules: respect DEB_BUILD_OPTIONS for parallel test running. Checksums-Sha1: 367fc63fa1324cc7afd8c2155cf28d15e641d8c1 5784 lambda-align_1.0.3-7_arm64.buildinfo 0f8ad587e36b2810ce6cadfd753135d4fac6d6d5 1295196 lambda-align_1.0.3-7_arm64.deb Checksums-Sha256: 990e7a5308a54555cb2a873ce0fc5a26da1705c51d1004ad9993c0c312240c44 5784 lambda-align_1.0.3-7_arm64.buildinfo 739dc6cf516d0022f4a7415b04fcf67279cd89dff511fea5b1482d9e0c5d8499 1295196 lambda-align_1.0.3-7_arm64.deb Files: ee34387aa33ee5c52cfbd8e02c175672 5784 science optional lambda-align_1.0.3-7_arm64.buildinfo b02a34718226c1120579f76ee0e070af 1295196 science optional lambda-align_1.0.3-7_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/lambda-align_1.0.3-7.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/lambda-align_1.0.3-7.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/lambda-align_1.0.3-7.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/lambda-align_1.0.3-7.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/experimental/arm64/lambda-align_1.0.3-7_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/lambda-align_1.0.3-7.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-21 11:03:16.393371793 +0000 +++ b2/build.log 2025-01-21 11:10:11.178717360 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Mon Jan 20 22:55:52 -12 2025 -I: pbuilder-time-stamp: 1737456952 +I: Current time: Tue Feb 24 07:26:18 +14 2026 +I: pbuilder-time-stamp: 1771867578 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration @@ -27,52 +27,84 @@ dpkg-source: info: applying 0004-make-test-not-depend-on-CXX.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 23 17:26 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='experimental' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=experimental + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7563b5c24948484eafd27ad8c3bd1fe1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='398091' - PS1='# ' - PS2='> ' + INVOCATION_ID=44f933dae07746a1992647b18e6e9465 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1691083 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_ME9r --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1 --logfile b1/build.log lambda-align_1.0.3-7.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/pbuilderrc_2vp0 --distribution experimental --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2 --logfile b2/build.log lambda-align_1.0.3-7.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/398091/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -196,7 +228,7 @@ Get: 61 http://deb.debian.org/debian experimental/main arm64 libseqan2-dev all 2.5.0~rc3+dfsg-1 [1222 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.4.0-2 [1385 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] -Fetched 41.3 MB in 0s (117 MB/s) +Fetched 41.3 MB in 0s (158 MB/s) Preconfiguring packages ... Selecting previously unselected package libproc2-0:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -468,7 +500,11 @@ fakeroot is already the newest version (1.36.2-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for experimental +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/lambda-align-1.0.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../lambda-align_1.0.3-7_source.changes dpkg-buildpackage: info: source package lambda-align dpkg-buildpackage: info: source version 1.0.3-7 dpkg-buildpackage: info: source distribution experimental @@ -538,7 +574,7 @@ to work with policies introduced by or earlier. --- Configuring done (3.3s) +-- Configuring done (3.6s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -563,30 +599,30 @@ make[2]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/depend make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/depend +cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda.dir/DependInfo.cmake "--color=" make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build -make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' -[ 25%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o -cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp -[ 50%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 25%] Building CXX object src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o +[ 50%] Building CXX object src/CMakeFiles/lambda.dir/lambda.cpp.o cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -MF CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o.d -o CMakeFiles/lambda_indexer.dir/lambda_indexer.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp -In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: -/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] - 323 | setDate(parser, __DATE__); - | ^~~~~~~~ +cd /build/reproducible-path/lambda-align-1.0.3/build/src && /usr/bin/c++ -DCMAKE_BUILD_TYPE=\"Release\" -DLAMBDA_MMAPPED_DB=1 -DSEQAN_APP_VERSION=\"1.0.2\" -DSEQAN_DATE=\"\" -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP="1 -DSEQAN_GLOBAL_EXCEPTION_HANDLER" -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -DSEQAN_VERSION_STRING=\"2.5.0\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -g -O2 -ffile-prefix-map=/build/reproducible-path/lambda-align-1.0.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -Wno-vla -flto=12 -O3 -DNDEBUG -s -fopenmp -MD -MT src/CMakeFiles/lambda.dir/lambda.cpp.o -MF CMakeFiles/lambda.dir/lambda.cpp.o.d -o CMakeFiles/lambda.dir/lambda.cpp.o -c /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp In file included from /build/reproducible-path/lambda-align-1.0.3/src/misc.hpp:34, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:35, from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.cpp:31: /build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 323 | setDate(parser, __DATE__); | ^~~~~~~~ +In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda.cpp:32: +/build/reproducible-path/lambda-align-1.0.3/src/options.hpp:323:21: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] + 323 | setDate(parser, __DATE__); + | ^~~~~~~~ In file included from /build/reproducible-path/lambda-align-1.0.3/src/lambda_indexer.hpp:37: /build/reproducible-path/lambda-align-1.0.3/src/radix_inplace.h:121:17: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 121 | public std::unary_function @@ -3850,11 +3886,16 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, + inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, + inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, + inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, + inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, + inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'operator++.isra': +/usr/include/c++/14/new: In member function 'process.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -3871,16 +3912,11 @@ inlined from 'pop' at /usr/include/seqan/pipe/pool_sorter.h:253:32, inlined from 'pop' at /usr/include/seqan/pipe/pool_base.h:613:42, inlined from 'operator++' at /usr/include/seqan/pipe/pool_base.h:870:24, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_namer.h:114:13, - inlined from 'operator++' at /usr/include/seqan/pipe/pipe_filter.h:129:13, - inlined from 'append' at /usr/include/seqan/pipe/pool_base.h:1330:13, - inlined from 'assign' at /usr/include/seqan/pipe/pool_base.h:1369:42, - inlined from 'operator<<' at /usr/include/seqan/pipe/pool_base.h:1376:22, - inlined from 'process.isra' at /usr/include/seqan/index/index_skew7_multi.h:327:26: + inlined from 'operator++.isra' at /usr/include/seqan/index/pipe_merger3.h:127:17: /usr/include/seqan/basic/allocator_interface.h:211:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 211 | data = (TValue *) operator new(count * sizeof(TValue)); | ^ -/usr/include/c++/14/new: In member function 'process.isra': +/usr/include/c++/14/new: In member function 'operator++.isra': /usr/include/c++/14/new:131:26: note: in a call to allocation function 'operator new' declared here 131 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^ @@ -4227,158 +4263,158 @@ Start 10: test_mkindex_tblastx_fm Start 11: test_search_blastn_sa_m0 Start 12: test_search_blastn_sa_m8 - 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.53 sec + 1/80 Test #3: test_mkindex_blastp_sa ........... Passed 0.38 sec Start 13: test_search_blastn_sa_m9 - 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.52 sec + 2/80 Test #4: test_mkindex_blastp_fm ........... Passed 0.42 sec Start 14: test_search_blastn_sa_sam - 3/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.52 sec + 3/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.50 sec Start 15: test_search_blastn_sa_bam - 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.59 sec + 4/80 Test #5: test_mkindex_blastx_sa ........... Passed 0.48 sec Start 16: test_search_blastn_sa_m9.gz - 5/80 Test #1: test_mkindex_blastn_sa ........... Passed 0.76 sec + 5/80 Test #6: test_mkindex_blastx_fm ........... Passed 0.49 sec Start 17: test_search_blastn_sa_sam.bz2 - 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.79 sec + 6/80 Test #2: test_mkindex_blastn_fm ........... Passed 0.67 sec Start 18: test_search_blastn_fm_m0 - 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.21 sec + 7/80 Test #7: test_mkindex_tblastn_sa .......... Passed 1.07 sec Start 19: test_search_blastn_fm_m8 - 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.25 sec + 8/80 Test #9: test_mkindex_tblastx_sa .......... Passed 1.09 sec Start 20: test_search_blastn_fm_m9 - 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.65 sec + 9/80 Test #8: test_mkindex_tblastn_fm .......... Passed 1.23 sec Start 21: test_search_blastn_fm_sam -10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.77 sec +10/80 Test #10: test_mkindex_tblastx_fm .......... Passed 1.24 sec Start 22: test_search_blastn_fm_bam -11/80 Test #13: test_search_blastn_sa_m9 ......... Passed 5.76 sec +11/80 Test #15: test_search_blastn_sa_bam ........ Passed 2.91 sec Start 23: test_search_blastn_fm_m9.gz -12/80 Test #22: test_search_blastn_fm_bam ........ Passed 4.49 sec +12/80 Test #13: test_search_blastn_sa_m9 ......... Passed 3.63 sec Start 24: test_search_blastn_fm_sam.bz2 -13/80 Test #20: test_search_blastn_fm_m9 ......... Passed 5.62 sec +13/80 Test #22: test_search_blastn_fm_bam ........ Passed 2.79 sec Start 25: test_search_blastp_sa_m0 -14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 6.84 sec +14/80 Test #12: test_search_blastn_sa_m8 ......... Passed 4.18 sec Start 26: test_search_blastp_sa_m8 -15/80 Test #15: test_search_blastn_sa_bam ........ Passed 6.59 sec +15/80 Test #18: test_search_blastn_fm_m0 ......... Passed 3.94 sec Start 27: test_search_blastp_sa_m9 -16/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 6.78 sec +16/80 Test #14: test_search_blastn_sa_sam ........ Passed 4.17 sec Start 28: test_search_blastp_sa_sam -17/80 Test #14: test_search_blastn_sa_sam ........ Passed 7.00 sec +17/80 Test #21: test_search_blastn_fm_sam ........ Passed 3.37 sec Start 29: test_search_blastp_sa_bam -18/80 Test #19: test_search_blastn_fm_m8 ......... Passed 6.46 sec +18/80 Test #11: test_search_blastn_sa_m0 ......... Passed 4.71 sec Start 30: test_search_blastp_sa_m9.gz -19/80 Test #18: test_search_blastn_fm_m0 ......... Passed 7.25 sec +19/80 Test #25: test_search_blastp_sa_m0 ......... Passed 0.82 sec Start 31: test_search_blastp_sa_sam.bz2 -20/80 Test #21: test_search_blastn_fm_sam ........ Passed 6.47 sec +20/80 Test #19: test_search_blastn_fm_m8 ......... Passed 4.12 sec Start 32: test_search_blastp_fm_m0 -21/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.08 sec +21/80 Test #20: test_search_blastn_fm_m9 ......... Passed 4.09 sec Start 33: test_search_blastp_fm_m8 -22/80 Test #11: test_search_blastn_sa_m0 ......... Passed 8.38 sec +22/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.31 sec Start 34: test_search_blastp_fm_m9 -23/80 Test #25: test_search_blastp_sa_m0 ......... Passed 1.58 sec +23/80 Test #16: test_search_blastn_sa_m9.gz ...... Passed 5.24 sec Start 35: test_search_blastp_fm_sam -24/80 Test #26: test_search_blastp_sa_m8 ......... Passed 1.76 sec +24/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.26 sec Start 36: test_search_blastp_fm_bam -25/80 Test #28: test_search_blastp_sa_sam ........ Passed 1.43 sec +25/80 Test #27: test_search_blastp_sa_m9 ......... Passed 1.30 sec Start 37: test_search_blastp_fm_m9.gz -26/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.87 sec +26/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.22 sec Start 38: test_search_blastp_fm_sam.bz2 -27/80 Test #29: test_search_blastp_sa_bam ........ Passed 1.71 sec +27/80 Test #32: test_search_blastp_fm_m0 ......... Passed 0.99 sec Start 39: test_search_blastx_sa_m0 -28/80 Test #32: test_search_blastp_fm_m0 ......... Passed 1.07 sec +28/80 Test #33: test_search_blastp_fm_m8 ......... Passed 0.98 sec Start 40: test_search_blastx_sa_m8 -29/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.58 sec +29/80 Test #30: test_search_blastp_sa_m9.gz ...... Passed 1.53 sec Start 41: test_search_blastx_sa_m9 -30/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 8.74 sec +30/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.47 sec Start 42: test_search_blastx_sa_sam -31/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.96 sec +31/80 Test #34: test_search_blastp_fm_m9 ......... Passed 0.87 sec Start 43: test_search_blastx_sa_bam -32/80 Test #34: test_search_blastp_fm_m9 ......... Passed 1.00 sec +32/80 Test #17: test_search_blastn_sa_sam.bz2 .... Passed 5.98 sec Start 44: test_search_blastx_sa_m9.gz -33/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.90 sec +33/80 Test #35: test_search_blastp_fm_sam ........ Passed 0.86 sec Start 45: test_search_blastx_sa_sam.bz2 -34/80 Test #31: test_search_blastp_sa_sam.bz2 .... Passed 1.88 sec +34/80 Test #36: test_search_blastp_fm_bam ........ Passed 0.84 sec Start 46: test_search_blastx_fm_m0 -35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 1.22 sec +35/80 Test #37: test_search_blastp_fm_m9.gz ...... Passed 0.98 sec Start 47: test_search_blastx_fm_m8 -36/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.04 sec +36/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 3.56 sec Start 48: test_search_blastx_fm_m9 -37/80 Test #23: test_search_blastn_fm_m9.gz ...... Passed 5.12 sec +37/80 Test #38: test_search_blastp_fm_sam.bz2 .... Passed 1.09 sec Start 49: test_search_blastx_fm_sam -38/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.20 sec +38/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 4.27 sec Start 50: test_search_blastx_fm_bam -39/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.67 sec +39/80 Test #46: test_search_blastx_fm_m0 ......... Passed 2.07 sec Start 51: test_search_blastx_fm_m9.gz -40/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.80 sec +40/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.04 sec Start 52: test_search_blastx_fm_sam.bz2 -41/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.96 sec +41/80 Test #48: test_search_blastx_fm_m9 ......... Passed 2.27 sec Start 53: test_search_tblastn_sa_m0 -42/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.54 sec +42/80 Test #40: test_search_blastx_sa_m8 ......... Passed 2.96 sec Start 54: test_search_tblastn_sa_m8 -43/80 Test #49: test_search_blastx_fm_sam ........ Passed 2.54 sec +43/80 Test #47: test_search_blastx_fm_m8 ......... Passed 2.46 sec Start 55: test_search_tblastn_sa_m9 -44/80 Test #40: test_search_blastx_sa_m8 ......... Passed 6.19 sec +44/80 Test #39: test_search_blastx_sa_m0 ......... Passed 3.23 sec Start 56: test_search_tblastn_sa_sam -45/80 Test #41: test_search_blastx_sa_m9 ......... Passed 6.23 sec +45/80 Test #43: test_search_blastx_sa_bam ........ Passed 3.23 sec Start 57: test_search_tblastn_sa_bam -46/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 6.02 sec +46/80 Test #50: test_search_blastx_fm_bam ........ Passed 1.68 sec Start 58: test_search_tblastn_sa_m9.gz -47/80 Test #24: test_search_blastn_fm_sam.bz2 .... Passed 9.18 sec +47/80 Test #44: test_search_blastx_sa_m9.gz ...... Passed 3.58 sec Start 59: test_search_tblastn_sa_sam.bz2 -48/80 Test #42: test_search_blastx_sa_sam ........ Passed 6.14 sec +48/80 Test #42: test_search_blastx_sa_sam ........ Passed 3.97 sec Start 60: test_search_tblastn_fm_m0 -49/80 Test #39: test_search_blastx_sa_m0 ......... Passed 6.53 sec +49/80 Test #41: test_search_blastx_sa_m9 ......... Passed 4.22 sec Start 61: test_search_tblastn_fm_m8 -50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 3.14 sec +50/80 Test #51: test_search_blastx_fm_m9.gz ...... Passed 2.39 sec Start 62: test_search_tblastn_fm_m9 -51/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.33 sec +51/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 3.18 sec Start 63: test_search_tblastn_fm_sam -52/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.92 sec +52/80 Test #54: test_search_tblastn_sa_m8 ........ Passed 3.05 sec Start 64: test_search_tblastn_fm_bam -53/80 Test #52: test_search_blastx_fm_sam.bz2 .... Passed 4.94 sec +53/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 5.68 sec +54/80 Test #56: test_search_tblastn_sa_sam ....... Passed 2.82 sec Start 65: test_search_tblastn_fm_m9.gz -54/80 Test #45: test_search_blastx_sa_sam.bz2 .... Passed 8.24 sec Start 66: test_search_tblastn_fm_sam.bz2 -55/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 4.67 sec +55/80 Test #57: test_search_tblastn_sa_bam ....... Passed 2.60 sec Start 67: test_search_tblastx_sa_m0 -56/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.73 sec +56/80 Test #53: test_search_tblastn_sa_m0 ........ Passed 3.15 sec Start 68: test_search_tblastx_sa_m8 -57/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 3.31 sec +57/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 2.48 sec Start 69: test_search_tblastx_sa_m9 -58/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 3.07 sec +58/80 Test #55: test_search_tblastn_sa_m9 ........ Passed 3.13 sec Start 70: test_search_tblastx_sa_sam -59/80 Test #57: test_search_tblastn_sa_bam ....... Passed 3.91 sec +59/80 Test #60: test_search_tblastn_fm_m0 ........ Passed 2.39 sec Start 71: test_search_tblastx_sa_bam -60/80 Test #56: test_search_tblastn_sa_sam ....... Passed 4.09 sec +60/80 Test #61: test_search_tblastn_fm_m8 ........ Passed 2.24 sec Start 72: test_search_tblastx_sa_m9.gz -61/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.75 sec +61/80 Test #62: test_search_tblastn_fm_m9 ........ Passed 2.57 sec Start 73: test_search_tblastx_sa_sam.bz2 -62/80 Test #58: test_search_tblastn_sa_m9.gz ..... Passed 4.67 sec +62/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 3.79 sec Start 74: test_search_tblastx_fm_m0 -63/80 Test #59: test_search_tblastn_sa_sam.bz2 ... Passed 5.06 sec +63/80 Test #63: test_search_tblastn_fm_sam ....... Passed 2.11 sec Start 75: test_search_tblastx_fm_m8 -64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 3.23 sec +64/80 Test #64: test_search_tblastn_fm_bam ....... Passed 2.59 sec Start 76: test_search_tblastx_fm_m9 -65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 3.03 sec +65/80 Test #65: test_search_tblastn_fm_m9.gz ..... Passed 2.91 sec Start 77: test_search_tblastx_fm_sam -66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 4.67 sec +66/80 Test #66: test_search_tblastn_fm_sam.bz2 ... Passed 3.57 sec Start 78: test_search_tblastx_fm_bam -67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 5.76 sec +67/80 Test #78: test_search_tblastx_fm_bam ....... Passed 4.17 sec Start 79: test_search_tblastx_fm_m9.gz -68/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 9.68 sec +68/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 6.05 sec Start 80: test_search_tblastx_fm_sam.bz2 -69/80 Test #76: test_search_tblastx_fm_m9 ........ Passed 9.88 sec -70/80 Test #77: test_search_tblastx_fm_sam ....... Passed 10.19 sec -71/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 10.97 sec -72/80 Test #71: test_search_tblastx_sa_bam ....... Passed 13.20 sec -73/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 16.26 sec -74/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 16.43 sec -75/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 16.92 sec -76/80 Test #70: test_search_tblastx_sa_sam ....... Passed 17.00 sec -77/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 16.55 sec -78/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 8.58 sec -79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 22.45 sec -80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 14.45 sec +69/80 Test #74: test_search_tblastx_fm_m0 ........ Passed 7.76 sec +70/80 Test #75: test_search_tblastx_fm_m8 ........ Passed 7.61 sec +71/80 Test #77: test_search_tblastx_fm_sam ....... Passed 6.80 sec +72/80 Test #71: test_search_tblastx_sa_bam ....... Passed 9.53 sec +73/80 Test #69: test_search_tblastx_sa_m9 ........ Passed 11.02 sec +74/80 Test #68: test_search_tblastx_sa_m8 ........ Passed 11.24 sec +75/80 Test #70: test_search_tblastx_sa_sam ....... Passed 11.46 sec +76/80 Test #67: test_search_tblastx_sa_m0 ........ Passed 11.75 sec +77/80 Test #79: test_search_tblastx_fm_m9.gz ..... Passed 5.55 sec +78/80 Test #72: test_search_tblastx_sa_m9.gz ..... Passed 13.03 sec +79/80 Test #73: test_search_tblastx_sa_sam.bz2 ... Passed 16.26 sec +80/80 Test #80: test_search_tblastx_fm_sam.bz2 ... Passed 10.84 sec 100% tests passed, 0 tests failed out of 80 -Total Test time (real) = 44.82 sec +Total Test time (real) = 31.82 sec make[1]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3' create-stamp debian/debhelper-build-stamp dh_testroot -O--builddirectory=build @@ -4398,15 +4434,15 @@ cd /build/reproducible-path/lambda-align-1.0.3/build && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /build/reproducible-path/lambda-align-1.0.3 /build/reproducible-path/lambda-align-1.0.3/src /build/reproducible-path/lambda-align-1.0.3/build /build/reproducible-path/lambda-align-1.0.3/build/src /build/reproducible-path/lambda-align-1.0.3/build/src/CMakeFiles/lambda_indexer.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' make -f src/CMakeFiles/lambda.dir/build.make src/CMakeFiles/lambda.dir/build +make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' -make -f src/CMakeFiles/lambda_indexer.dir/build.make src/CMakeFiles/lambda_indexer.dir/build -[ 50%] Built target lambda make[3]: Entering directory '/build/reproducible-path/lambda-align-1.0.3/build' make[3]: Nothing to be done for 'src/CMakeFiles/lambda_indexer.dir/build'. make[3]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' +[ 50%] Built target lambda [100%] Built target lambda_indexer make[2]: Leaving directory '/build/reproducible-path/lambda-align-1.0.3/build' /usr/bin/cmake -E cmake_progress_start /build/reproducible-path/lambda-align-1.0.3/build/CMakeFiles 0 @@ -4478,12 +4514,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1691083/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/398091 and its subdirectories -I: Current time: Mon Jan 20 23:03:15 -12 2025 -I: pbuilder-time-stamp: 1737457395 +I: removing directory /srv/workspace/pbuilder/1691083 and its subdirectories +I: Current time: Tue Feb 24 07:33:09 +14 2026 +I: pbuilder-time-stamp: 1771867989 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/lambda-align_1.0.3-7.diff: 80.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/lambda-align_1.0.3-7.diff.gz b2/build.log: 96.2% -- replaced with stdout Compressing the 1st log... b1/build.log: 96.3% -- replaced with stdout Tue Jan 21 11:10:12 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_lambda-align_experimental_arm64_1737457812 + touch /var/log/reproducible-builds/diffoscope_stamp_lambda-align_experimental_arm64_1737457812 + RESULT=0 + systemd-run '--description=diffoscope on lambda-align/1.0.3-7 in experimental/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_19-54323 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc --run-session -c jenkins-reproducible-unstable-diffoscope-98f3d104-34ce-4089-af90-8740f98367a3 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/dbd-tmp-qHG1OgG ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1/lambda-align_1.0.3-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2/lambda-align_1.0.3-7_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_19-54323.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/lambda-align_1.0.3-7.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b1/lambda-align_1.0.3-7_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.INoc8xvc/b2/lambda-align_1.0.3-7_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.331s) 0.331s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.025s) 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 628ms CPU time consumed: 628ms _ _ _ _ _ | | __ _ _ __ ___ | |__ __| | __ _ __ _| (_) __ _ _ __ | |/ _` | '_ ` _ \| '_ \ / _` |/ _` |_____ / _` | | |/ _` | '_ \ | | (_| | | | | | | |_) | (_| | (_| |_____| (_| | | | (_| | | | | |_|\__,_|_| |_| |_|_.__/ \__,_|\__,_| \__,_|_|_|\__, |_| |_| |___/ Tue Jan 21 11:10:14 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Tue Jan 21 11:10:14 UTC 2025 I: lambda-align from experimental built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-21 11:10:15] INFO: Starting at 2025-01-21 11:10:15.383412 [2025-01-21 11:10:15] INFO: Generating the pages of 1 package(s) [2025-01-21 11:10:15] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/arm64/lambda-align didn't produce a buildlog, even though it has been built. [2025-01-21 11:10:15] INFO: Finished at 2025-01-21 11:10:15.908709, took: 0:00:00.525301 Tue Jan 21 11:10:15 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/arm64/lambda-align.html Tue Jan 21 11:10:15 UTC 2025 I: Submitting .buildinfo files to external archives: Tue Jan 21 11:10:15 UTC 2025 I: Submitting 8.0K b1/lambda-align_1.0.3-7_arm64.buildinfo.asc https://buildinfo.debian.net/367fc63fa1324cc7afd8c2155cf28d15e641d8c1/lambda-align_1.0.3-7_arm64 Tue Jan 21 11:10:23 UTC 2025 I: Submitting 8.0K b2/lambda-align_1.0.3-7_arm64.buildinfo.asc https://buildinfo.debian.net/7b6210cee9e74c94195c4a54f9bc07f83d92830a/lambda-align_1.0.3-7_arm64 Tue Jan 21 11:10:27 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Jan 21 11:10:27 UTC 2025 I: Done submitting .buildinfo files. Tue Jan 21 11:10:27 UTC 2025 I: Removing signed lambda-align_1.0.3-7_arm64.buildinfo.asc files: removed './b1/lambda-align_1.0.3-7_arm64.buildinfo.asc' removed './b2/lambda-align_1.0.3-7_arm64.buildinfo.asc' 1737457827 arm64 experimental lambda-align Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/lambda-align_1.0.3-7.rbuild.log: 95.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/lambda-align_1.0.3-7.rbuild.log.gz [2025-01-21 11:10:27] INFO: Starting at 2025-01-21 11:10:27.331030 [2025-01-21 11:10:27] INFO: Generating the pages of 1 package(s) [2025-01-21 11:10:27] INFO: Finished at 2025-01-21 11:10:27.859606, took: 0:00:00.528584 All cleanup done. Tue Jan 21 11:10:27 UTC 2025 - total duration: 0h 14m 39s. Tue Jan 21 11:10:27 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-IxwB4lzU, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 14min 52.333s CPU time consumed: 7.247s