Running as unit: rb-build-arm64_2-63543.service ==================================================================================== Thu Nov 28 14:33:39 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_2) on jenkins, called using "codethink01-arm64 codethink03-arm64" as arguments. Thu Nov 28 14:33:39 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hnShq9SN" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 28 14:33:39 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Thu Nov 28 14:33:39 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-fBcwUh' Thu Nov 28 14:33:39 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Nov 28 14:33:39 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ikMbkL' ok, let's check if r-bioc-wrench is building anywhere yet… ok, r-bioc-wrench is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-wrench in trixie on arm64 on jenkins now. 1st build will be done on codethink01-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Thu Nov 28 14:33:47 UTC 2024 I: starting to build r-bioc-wrench/trixie/arm64 on jenkins on '2024-11-28 14:33' Thu Nov 28 14:33:47 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/63543/console.log 1732804427 arm64 trixie r-bioc-wrench Thu Nov 28 14:33:47 UTC 2024 I: Downloading source for trixie/r-bioc-wrench=1.22.0+dfsg-1 --2024-11-28 14:33:47-- http://deb.debian.org/debian/pool/main/r/r-bioc-wrench/r-bioc-wrench_1.22.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2113 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-wrench_1.22.0+dfsg-1.dsc’ 0K .. 100% 312M=0s 2024-11-28 14:33:47 (312 MB/s) - ‘r-bioc-wrench_1.22.0+dfsg-1.dsc’ saved [2113/2113] --2024-11-28 14:33:47-- http://deb.debian.org/debian/pool/main/r/r-bioc-wrench/r-bioc-wrench_1.22.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2113 (2.1K) [text/prs.lines.tag] Saving to: ‘r-bioc-wrench_1.22.0+dfsg-1.dsc’ 0K .. 100% 312M=0s 2024-11-28 14:33:47 (312 MB/s) - ‘r-bioc-wrench_1.22.0+dfsg-1.dsc’ saved [2113/2113] Thu Nov 28 14:33:47 UTC 2024 I: r-bioc-wrench_1.22.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-wrench Binary: r-bioc-wrench Architecture: all Version: 1.22.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Andreas Tille Homepage: https://bioconductor.org/packages/Wrench/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-wrench Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma (>= 3.60.4), r-cran-matrixstats, r-cran-locfit Package-List: r-bioc-wrench deb gnu-r optional arch=all Checksums-Sha1: 677c2cb83b25619caa6188d393285900baa54a6e 9396 r-bioc-wrench_1.22.0+dfsg.orig.tar.xz 139ca04378a379aba84df7fc53ac89cb2fe5592f 5388 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz Checksums-Sha256: 76002f4892e0600ccd0334b395721251c6e37d13cb6ec4dc60adbfad10f0eb5e 9396 r-bioc-wrench_1.22.0+dfsg.orig.tar.xz 2ec09d9d9815d0a7f032682b7b353e7674eff3a05acf42ddc681d23c5326a1b3 5388 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz Files: fcc662e2a2af58aebba3e17df5f70143 9396 r-bioc-wrench_1.22.0+dfsg.orig.tar.xz ff42f41653b1980d63d3a1c5ed64db8c 5388 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAma/ZaIACgkQPCZ2P2xn 5uJyFBAAukODRI3SGbg2z4ELkjeKnoNeIyfPxvxqq3qDn6vA+fveBcAUXh/6qQNX HoADxKPfl/NCSiNXPPJyk3YGBsLJkLfqncDff8sj4lN9CICEwjWm4lhyEhTqJXxs tK3S9Sf7/M80byyABSqQxpPeOFgCnnZEJGpzbMon5IxIKy3z2o1CV8NXY5f5TBNr UhXZXp2wCAZfCNZNorCgqo6GYnW+LCChkoWqpgc51lHSPeWgCb1vnHCBAg25NMm7 qaz/LVdi7JyrNX69ERMNBwi/Gbnl4i7oy4s/lGKjAmuTlxZ7D7acJlnwDMVJR9Ui qCVKZICf+2lA5NX/4uEuvnJWCbhPMK/fLMe9cc4kHhXMzFZsmXpPRwUHd/ryyMzF bSad3XChknHJA2CBLsQUfDNzbVcHU0hXT+bzmuY7Q5br23kXLvVZPl75EGrUrprx 25r4CRtFoA8/45iAwMIFtKP5Wb3lRupILqRF4Rrp8N4xxgavmE3MvBJGt7vzF4Sz j31wCCF/dHgSD7QeyRvkkzTM7dTUnZty4KNNVt6PUK2Lg/tsdBPHTZXvAWLYrzW3 DtFAlOhM5nKs+CHHcKDR+j5f3/wCjcjJsY1DhTXc0ATaN/u128pKD/j7e6nYffLT fBWOmGHA8bnbn/xu1Z8RxdSaWM23q7YHsoJFLVJz6UNX+F+3TF8= =tW26 -----END PGP SIGNATURE----- Thu Nov 28 14:33:47 UTC 2024 I: Checking whether the package is not for us Thu Nov 28 14:33:47 UTC 2024 I: Starting 1st build on remote node codethink01-arm64.debian.net. Thu Nov 28 14:33:47 UTC 2024 I: Preparing to do remote build '1' on codethink01-arm64.debian.net. Thu Nov 28 14:33:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink01-arm64.debian.net is marked as down. Thu Nov 28 14:33:47 UTC 2024 - checking via ssh if codethink01-arm64.debian.net is up. removed '/tmp/read-only-fs-test-qFnq58' ==================================================================================== Wed Dec 31 20:56:49 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink01-arm64, called using "1 r-bioc-wrench trixie /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e 1.22.0+dfsg-1" as arguments. Wed Dec 31 20:56:49 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ejT8sE61" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Dec 31 20:56:49 UTC 2025 I: Downloading source for trixie/r-bioc-wrench=1.22.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-wrench' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 16.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (dsc) [2113 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (tar) [9396 B] Get:3 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (diff) [5388 B] Fetched 16.9 kB in 0s (150 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-wrench' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 16.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (dsc) [2113 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (tar) [9396 B] Get:3 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (diff) [5388 B] Fetched 16.9 kB in 0s (150 kB/s) Download complete and in download only mode ============================================================================= Building r-bioc-wrench in trixie on arm64 on codethink01-arm64 now. Date: Wed Dec 31 20:56:49 GMT 2025 Date UTC: Wed Dec 31 20:56:49 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 31 08:56:49 -12 2025 I: pbuilder-time-stamp: 1767214609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-wrench_1.22.0+dfsg-1.dsc] I: copying [./r-bioc-wrench_1.22.0+dfsg.orig.tar.xz] I: copying [./r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 14:43:46 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-wrench_1.22.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-wrench in r-bioc-wrench-1.22.0+dfsg dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ffe3b7d1a035477cbb410f22f5d43aef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3239361' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_pU35 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1 --logfile b1/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma (>= 3.60.4), r-cran-matrixstats, r-cran-locfit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma (>= 3.60.4); however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-locfit; however: Package r-cran-locfit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-limma{a} r-cran-lattice{a} r-cran-locfit{a} r-cran-matrixstats{a} r-cran-statmod{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 191 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 112 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.44-4 [230 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.44-4 [220 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.44-4 [60.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.44-4 [704 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Fetched 102 MB in 0s (230 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../089-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../101-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... 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Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 31 20:57:14 UTC 2025. Universal Time is now: Wed Dec 31 20:57:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.44-4) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up icu-devtools (72.1-5+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsub-name-perl:arm64 (0.27-1+b3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:arm64 (10.44-4) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:arm64 (10.44-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-wrench-1.22.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-wrench_1.22.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-wrench dpkg-buildpackage: info: source version 1.22.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-wrench/ -O--buildsystem=R I: R Package: Wrench Version: 1.22.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 16:43:29 +0200 mkdir -p /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 16:43:29 +0200'" * installing *source* package 'Wrench' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Wrench) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-metagenomeseq for Suggests:metagenomeSeq I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-edger for Suggests:edgeR I: Using r-bioc-limma for Imports:limma I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-locfit for Imports:locfit I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-wrench as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-wrench' in '../r-bioc-wrench_1.22.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3239361 and its subdirectories I: Current time: Wed Dec 31 08:57:30 -12 2025 I: pbuilder-time-stamp: 1767214650 Wed Dec 31 20:57:30 UTC 2025 I: Signing ./b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo as r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc Wed Dec 31 20:57:31 UTC 2025 I: Signed ./b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo as ./b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc Wed Dec 31 20:57:31 UTC 2025 - build #1 for r-bioc-wrench/trixie/arm64 on codethink01-arm64 done. Starting cleanup. All cleanup done. Wed Dec 31 20:57:31 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-ejT8sE61, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 14:34 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 14:33 b2 -rw-r--r-- 1 jenkins jenkins 2113 Aug 16 14:44 r-bioc-wrench_1.22.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 3292 Nov 28 14:33 rbuildlog.O9ds0KW /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1: total 180 -rw-r--r-- 1 jenkins jenkins 77320 Nov 28 14:34 build.log -rw-r--r-- 1 jenkins jenkins 5388 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2113 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 59576 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 10038 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10920 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1123 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1308 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2: total 0 Thu Nov 28 14:34:32 UTC 2024 I: Deleting $TMPDIR on codethink01-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Dec 31 08:56:49 -12 2025 I: pbuilder-time-stamp: 1767214609 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-wrench_1.22.0+dfsg-1.dsc] I: copying [./r-bioc-wrench_1.22.0+dfsg.orig.tar.xz] I: copying [./r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 14:43:46 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-wrench_1.22.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-wrench in r-bioc-wrench-1.22.0+dfsg dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='ffe3b7d1a035477cbb410f22f5d43aef' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3239361' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_pU35 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1 --logfile b1/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma (>= 3.60.4), r-cran-matrixstats, r-cran-locfit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma (>= 3.60.4); however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-locfit; however: Package r-cran-locfit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-limma{a} r-cran-lattice{a} r-cran-locfit{a} r-cran-matrixstats{a} r-cran-statmod{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 191 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 112 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.44-4 [230 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.44-4 [220 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.44-4 [60.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.44-4 [704 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Fetched 102 MB in 0s (230 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../027-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../029-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../034-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package zip. Preparing to unpack .../035-zip_3.0-14+b1_arm64.deb ... Unpacking zip (3.0-14+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../036-unzip_6.0-28+b1_arm64.deb ... Unpacking unzip (6.0-28+b1) ... Selecting previously unselected package libpaper1:arm64. Preparing to unpack .../037-libpaper1_1.1.29+b2_arm64.deb ... Unpacking libpaper1:arm64 (1.1.29+b2) ... Selecting previously unselected package libpaper-utils. Preparing to unpack .../038-libpaper-utils_1.1.29+b2_arm64.deb ... Unpacking libpaper-utils (1.1.29+b2) ... Selecting previously unselected package xdg-utils. Preparing to unpack .../039-xdg-utils_1.1.3-4.1_all.deb ... Unpacking xdg-utils (1.1.3-4.1) ... Selecting previously unselected package libblas3:arm64. Preparing to unpack .../040-libblas3_3.12.0-4_arm64.deb ... Unpacking libblas3:arm64 (3.12.0-4) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../041-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../042-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../043-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../044-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../045-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. Preparing to unpack .../046-fonts-dejavu-core_2.37-8_all.deb ... Unpacking fonts-dejavu-core (2.37-8) ... Selecting previously unselected package fontconfig-config. Preparing to unpack .../047-fontconfig-config_2.15.0-1.1+b1_arm64.deb ... Unpacking fontconfig-config (2.15.0-1.1+b1) ... Selecting previously unselected package libfontconfig1:arm64. Preparing to unpack .../048-libfontconfig1_2.15.0-1.1+b1_arm64.deb ... Unpacking libfontconfig1:arm64 (2.15.0-1.1+b1) ... Selecting previously unselected package libpixman-1-0:arm64. Preparing to unpack .../049-libpixman-1-0_0.44.0-3_arm64.deb ... Unpacking libpixman-1-0:arm64 (0.44.0-3) ... Selecting previously unselected package libxau6:arm64. Preparing to unpack .../050-libxau6_1%3a1.0.11-1_arm64.deb ... Unpacking libxau6:arm64 (1:1.0.11-1) ... Selecting previously unselected package libxdmcp6:arm64. Preparing to unpack .../051-libxdmcp6_1%3a1.1.5-1_arm64.deb ... Unpacking libxdmcp6:arm64 (1:1.1.5-1) ... Selecting previously unselected package libxcb1:arm64. Preparing to unpack .../052-libxcb1_1.17.0-2+b1_arm64.deb ... Unpacking libxcb1:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libx11-data. Preparing to unpack .../053-libx11-data_2%3a1.8.10-2_all.deb ... Unpacking libx11-data (2:1.8.10-2) ... Selecting previously unselected package libx11-6:arm64. Preparing to unpack .../054-libx11-6_2%3a1.8.10-2_arm64.deb ... Unpacking libx11-6:arm64 (2:1.8.10-2) ... Selecting previously unselected package libxcb-render0:arm64. Preparing to unpack .../055-libxcb-render0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-render0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxcb-shm0:arm64. Preparing to unpack .../056-libxcb-shm0_1.17.0-2+b1_arm64.deb ... Unpacking libxcb-shm0:arm64 (1.17.0-2+b1) ... Selecting previously unselected package libxext6:arm64. Preparing to unpack .../057-libxext6_2%3a1.3.4-1+b2_arm64.deb ... Unpacking libxext6:arm64 (2:1.3.4-1+b2) ... Selecting previously unselected package libxrender1:arm64. Preparing to unpack .../058-libxrender1_1%3a0.9.10-1.1+b2_arm64.deb ... Unpacking libxrender1:arm64 (1:0.9.10-1.1+b2) ... Selecting previously unselected package libcairo2:arm64. Preparing to unpack .../059-libcairo2_1.18.2-2_arm64.deb ... Unpacking libcairo2:arm64 (1.18.2-2) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../060-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../061-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../062-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../063-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../064-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../065-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../066-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../067-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../068-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../069-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../070-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../071-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../072-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../073-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../074-libdeflate0_1.22-1_arm64.deb ... Unpacking libdeflate0:arm64 (1.22-1) ... Selecting previously unselected package libglib2.0-0t64:arm64. Preparing to unpack .../075-libglib2.0-0t64_2.82.2-2_arm64.deb ... Unpacking libglib2.0-0t64:arm64 (2.82.2-2) ... Selecting previously unselected package libjpeg62-turbo:arm64. Preparing to unpack .../076-libjpeg62-turbo_1%3a2.1.5-3+b1_arm64.deb ... Unpacking libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../077-libgfortran5_14.2.0-8_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-8) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../078-liblapack3_3.12.0-4_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-4) ... Selecting previously unselected package fontconfig. Preparing to unpack .../079-fontconfig_2.15.0-1.1+b1_arm64.deb ... Unpacking fontconfig (2.15.0-1.1+b1) ... Selecting previously unselected package libfribidi0:arm64. Preparing to unpack .../080-libfribidi0_1.0.15-1_arm64.deb ... Unpacking libfribidi0:arm64 (1.0.15-1) ... Selecting previously unselected package libgraphite2-3:arm64. Preparing to unpack .../081-libgraphite2-3_1.3.14-2+b1_arm64.deb ... Unpacking libgraphite2-3:arm64 (1.3.14-2+b1) ... Selecting previously unselected package libharfbuzz0b:arm64. Preparing to unpack .../082-libharfbuzz0b_10.0.1-1_arm64.deb ... Unpacking libharfbuzz0b:arm64 (10.0.1-1) ... Selecting previously unselected package libthai-data. Preparing to unpack .../083-libthai-data_0.1.29-2_all.deb ... Unpacking libthai-data (0.1.29-2) ... Selecting previously unselected package libdatrie1:arm64. Preparing to unpack .../084-libdatrie1_0.2.13-3+b1_arm64.deb ... Unpacking libdatrie1:arm64 (0.2.13-3+b1) ... Selecting previously unselected package libthai0:arm64. Preparing to unpack .../085-libthai0_0.1.29-2+b1_arm64.deb ... Unpacking libthai0:arm64 (0.1.29-2+b1) ... Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../089-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../092-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../093-libsharpyuv0_1.4.0-0.1+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../094-libwebp7_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../095-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../096-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../097-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../101-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... Selecting previously unselected package libice6:arm64. Preparing to unpack .../102-libice6_2%3a1.1.1-1_arm64.deb ... Unpacking libice6:arm64 (2:1.1.1-1) ... Selecting previously unselected package libsm6:arm64. Preparing to unpack .../103-libsm6_2%3a1.2.4-1_arm64.deb ... Unpacking libsm6:arm64 (2:1.2.4-1) ... Selecting previously unselected package libxt6t64:arm64. Preparing to unpack .../104-libxt6t64_1%3a1.2.1-1.2+b1_arm64.deb ... Unpacking libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Selecting previously unselected package r-base-core. Preparing to unpack .../105-r-base-core_4.4.2-1_arm64.deb ... Unpacking r-base-core (4.4.2-1) ... Selecting previously unselected package libgfortran-14-dev:arm64. Preparing to unpack .../106-libgfortran-14-dev_14.2.0-8_arm64.deb ... Unpacking libgfortran-14-dev:arm64 (14.2.0-8) ... Selecting previously unselected package gfortran-14-aarch64-linux-gnu. Preparing to unpack .../107-gfortran-14-aarch64-linux-gnu_14.2.0-8_arm64.deb ... Unpacking gfortran-14-aarch64-linux-gnu (14.2.0-8) ... Selecting previously unselected package gfortran-14. Preparing to unpack .../108-gfortran-14_14.2.0-8_arm64.deb ... Unpacking gfortran-14 (14.2.0-8) ... Selecting previously unselected package gfortran-aarch64-linux-gnu. Preparing to unpack .../109-gfortran-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gfortran. Preparing to unpack .../110-gfortran_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran (4:14.2.0-1) ... Selecting previously unselected package libblas-dev:arm64. Preparing to unpack .../111-libblas-dev_3.12.0-4_arm64.deb ... Unpacking libblas-dev:arm64 (3.12.0-4) ... Selecting previously unselected package liblapack-dev:arm64. Preparing to unpack .../112-liblapack-dev_3.12.0-4_arm64.deb ... Unpacking liblapack-dev:arm64 (3.12.0-4) ... Selecting previously unselected package libncurses6:arm64. 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Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../119-libpcre2-32-0_10.44-4_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../120-libpcre2-posix3_10.44-4_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../121-libpcre2-dev_10.44-4_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.44-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:arm64. Preparing to unpack .../123-libpng-dev_1.6.44-2_arm64.deb ... Unpacking libpng-dev:arm64 (1.6.44-2) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../124-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package liblzma-dev:arm64. Preparing to unpack .../125-liblzma-dev_5.6.3-1+b1_arm64.deb ... Unpacking liblzma-dev:arm64 (5.6.3-1+b1) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../126-icu-devtools_72.1-5+b1_arm64.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../127-libicu-dev_72.1-5+b1_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-5+b1) ... Selecting previously unselected package libxmuu1:arm64. Preparing to unpack .../128-libxmuu1_2%3a1.1.3-3+b3_arm64.deb ... Unpacking libxmuu1:arm64 (2:1.1.3-3+b3) ... Selecting previously unselected package xauth. Preparing to unpack .../129-xauth_1%3a1.1.2-1+b1_arm64.deb ... Unpacking xauth (1:1.1.2-1+b1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../130-libpkgconf3_1.8.1-4_arm64.deb ... 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Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../143-liblwp-mediatypes-perl_6.04-2_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-2) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../144-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../145-libhttp-message-perl_7.00-2_all.deb ... Unpacking libhttp-message-perl (7.00-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../146-libparams-util-perl_1.102-3+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../147-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../148-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../149-libb-hooks-op-check-perl_0.22-3+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../150-libdynaloader-functions-perl_0.004-1_all.deb ... Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../151-libdevel-callchecker-perl_0.009-1+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../152-libparams-classify-perl_0.015-2+b4_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b4) ... Selecting previously unselected package libmodule-runtime-perl. 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Unpacking libclass-load-xs-perl (0.10-2+b4) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../159-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../160-libdevel-globaldestruction-perl_0.14-4_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-4) ... Selecting previously unselected package libalgorithm-c3-perl. Preparing to unpack .../161-libalgorithm-c3-perl_0.11-2_all.deb ... Unpacking libalgorithm-c3-perl (0.11-2) ... Selecting previously unselected package libclass-c3-perl. Preparing to unpack .../162-libclass-c3-perl_0.35-2_all.deb ... Unpacking libclass-c3-perl (0.35-2) ... Selecting previously unselected package libmro-compat-perl. Preparing to unpack .../163-libmro-compat-perl_0.15-2_all.deb ... Unpacking libmro-compat-perl (0.15-2) ... 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Selecting previously unselected package libmodule-runtime-conflicts-perl. Preparing to unpack .../169-libmodule-runtime-conflicts-perl_0.003-2_all.deb ... Unpacking libmodule-runtime-conflicts-perl (0.003-2) ... Selecting previously unselected package libpackage-deprecationmanager-perl. Preparing to unpack .../170-libpackage-deprecationmanager-perl_0.18-1_all.deb ... Unpacking libpackage-deprecationmanager-perl (0.18-1) ... Selecting previously unselected package libpackage-stash-xs-perl:arm64. Preparing to unpack .../171-libpackage-stash-xs-perl_0.30-1+b4_arm64.deb ... Unpacking libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Selecting previously unselected package libmoose-perl:arm64. Preparing to unpack .../172-libmoose-perl_2.2207-1+b2_arm64.deb ... Unpacking libmoose-perl:arm64 (2.2207-1+b2) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../173-libvariable-magic-perl_0.64-1+b1_arm64.deb ... Unpacking libvariable-magic-perl (0.64-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../174-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../175-libsub-identify-perl_0.14-3+b3_arm64.deb ... Unpacking libsub-identify-perl (0.14-3+b3) ... Selecting previously unselected package libsub-name-perl:arm64. Preparing to unpack .../176-libsub-name-perl_0.27-1+b3_arm64.deb ... Unpacking libsub-name-perl:arm64 (0.27-1+b3) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../177-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../178-libnghttp3-9_1.4.0-1+b1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:arm64. 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Unpacking r-cran-matrixstats (1.4.1-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libdatrie1:arm64 (0.2.13-3+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... 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Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 31 20:57:14 UTC 2025. Universal Time is now: Wed Dec 31 20:57:14 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.44-4) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... 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Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:arm64 (10.44-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... 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Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-wrench-1.22.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-wrench_1.22.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-wrench dpkg-buildpackage: info: source version 1.22.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-wrench/ -O--buildsystem=R I: R Package: Wrench Version: 1.22.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 16:43:29 +0200 mkdir -p /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 16:43:29 +0200'" * installing *source* package 'Wrench' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Wrench) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-metagenomeseq for Suggests:metagenomeSeq I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-edger for Suggests:edgeR I: Using r-bioc-limma for Imports:limma I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-locfit for Imports:locfit I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-wrench as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-wrench' in '../r-bioc-wrench_1.22.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3239361 and its subdirectories I: Current time: Wed Dec 31 08:57:30 -12 2025 I: pbuilder-time-stamp: 1767214650 Thu Nov 28 14:34:32 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Thu Nov 28 14:34:32 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Thu Nov 28 14:34:32 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Nov 28 14:34:32 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-w303HL' ==================================================================================== Wed Dec 31 20:57:34 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 r-bioc-wrench trixie /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e 1.22.0+dfsg-1" as arguments. Wed Dec 31 20:57:34 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-buGWSMKb" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Dec 31 20:57:34 UTC 2025 I: Downloading source for trixie/r-bioc-wrench=1.22.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-wrench' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 16.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (dsc) [2113 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (tar) [9396 B] Get:3 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (diff) [5388 B] Fetched 16.9 kB in 0s (786 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-wrench' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-wrench.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 16.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (dsc) [2113 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (tar) [9396 B] Get:3 http://deb.debian.org/debian trixie/main r-bioc-wrench 1.22.0+dfsg-1 (diff) [5388 B] Fetched 16.9 kB in 0s (786 kB/s) Download complete and in download only mode ============================================================================= Re-Building r-bioc-wrench in trixie on arm64 on codethink03-arm64 now. Date: Wed Dec 31 20:57:34 GMT 2025 Date UTC: Wed Dec 31 20:57:34 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_1YY2 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' r-bioc-wrench = debian-installer -o r-bioc-wrench = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' r-bioc-wrench = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_1YY2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2 --logfile b2/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Jan 1 10:57:35 +14 2026 I: pbuilder-time-stamp: 1767214655 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-wrench_1.22.0+dfsg-1.dsc] I: copying [./r-bioc-wrench_1.22.0+dfsg.orig.tar.xz] I: copying [./r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Aug 16 14:43:46 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-wrench_1.22.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-wrench in r-bioc-wrench-1.22.0+dfsg dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 31 20:57 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=e8cf81a3759443b59c503cbdffa4f35b LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2961469 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_1YY2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2 --logfile b2/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-bioc-limma (>= 3.60.4), r-cran-matrixstats, r-cran-locfit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-limma (>= 3.60.4); however: Package r-bioc-limma is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-locfit; however: Package r-cran-locfit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} icu-devtools{a} intltool-debian{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} liblerc4{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libssh2-1t64{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} m4{a} man-db{a} openssl{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-biocgenerics{a} r-bioc-limma{a} r-cran-lattice{a} r-cran-locfit{a} r-cran-matrixstats{a} r-cran-statmod{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libx11-protocol-perl lynx publicsuffix r-cran-base64enc r-cran-ggplot2 r-cran-knitr r-cran-markdown r-cran-microbenchmark r-cran-r.devices r-cran-r.rsp r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 191 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After unpacking 322 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 28 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 40 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 112 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-4 [106 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-4 [3709 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.44-4 [230 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.44-4 [220 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.44-4 [60.4 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.44-4 [704 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 137 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 162 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 171 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Fetched 102 MB in 1s (97.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../020-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../021-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../022-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../023-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../024-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../025-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../026-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../027-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../028-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../029-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../030-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../031-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../032-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../033-po-debconf_1.0.21+nmu1_all.deb ... 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Selecting previously unselected package libpango-1.0-0:arm64. Preparing to unpack .../086-libpango-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpango-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangoft2-1.0-0:arm64. Preparing to unpack .../087-libpangoft2-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libpangocairo-1.0-0:arm64. Preparing to unpack .../088-libpangocairo-1.0-0_1.54.0+ds-3_arm64.deb ... Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../089-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../090-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../091-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../098-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../099-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../100-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... Selecting previously unselected package libtk8.6:arm64. Preparing to unpack .../101-libtk8.6_8.6.15-1_arm64.deb ... Unpacking libtk8.6:arm64 (8.6.15-1) ... 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Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../119-libpcre2-32-0_10.44-4_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../120-libpcre2-posix3_10.44-4_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.44-4) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../121-libpcre2-dev_10.44-4_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.44-4) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../122-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:arm64. Preparing to unpack .../123-libpng-dev_1.6.44-2_arm64.deb ... Unpacking libpng-dev:arm64 (1.6.44-2) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../124-libbz2-dev_1.0.8-6_arm64.deb ... 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Unpacking r-cran-matrixstats (1.4.1-1) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libgraphite2-3:arm64 (1.3.14-2+b1) ... Setting up libpixman-1-0:arm64 (0.44.0-3) ... Setting up libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libdatrie1:arm64 (0.2.13-3+b1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libxcb-render0:arm64 (1.17.0-2+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up unzip (6.0-28+b1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libtry-tiny-perl (0.32-1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libpcre2-16-0:arm64 (10.44-4) ... Setting up libsub-install-perl (0.929-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Dec 31 20:58:32 UTC 2025. Universal Time is now: Wed Dec 31 20:58:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.44-4) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up icu-devtools (72.1-5+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsub-name-perl:arm64 (0.27-1+b3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:arm64 (10.44-4) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libblas-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up dctrl-tools (2.24-3+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libpcre2-dev:arm64 (10.44-4) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up liblapack-dev:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up dh-r (20231212) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-wrench-1.22.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-wrench_1.22.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-wrench dpkg-buildpackage: info: source version 1.22.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-wrench/ -O--buildsystem=R I: R Package: Wrench Version: 1.22.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Fri, 16 Aug 2024 16:43:29 +0200 mkdir -p /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-wrench-1.22.0\+dfsg/debian/r-bioc-wrench/usr/lib/R/site-library --clean . "--built-timestamp='Fri, 16 Aug 2024 16:43:29 +0200'" * installing *source* package 'Wrench' ... ** using staged installation ** R ** inst ** byte-compile and prepare package for lazy loading ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location ** testing if installed package can be loaded from final location ** testing if installed package keeps a record of temporary installation path * DONE (Wrench) W: Ignoring specified R dependency: R (>= 3.5.0) I: Using r-cran-knitr for Suggests:knitr I: Using r-cran-rmarkdown for Suggests:rmarkdown I: Using r-bioc-metagenomeseq for Suggests:metagenomeSeq I: Using r-bioc-deseq2 for Suggests:DESeq2 I: Using r-bioc-edger for Suggests:edgeR I: Using r-bioc-limma for Imports:limma I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-locfit for Imports:locfit I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-wrench as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R dh_fixperms -O--buildsystem=R dh_missing -O--buildsystem=R dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-wrench' in '../r-bioc-wrench_1.22.0+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-wrench_1.22.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2961469 and its subdirectories I: Current time: Thu Jan 1 10:59:30 +14 2026 I: pbuilder-time-stamp: 1767214770 + false + set +x Wed Dec 31 20:59:30 UTC 2025 I: Signing ./b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo as r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc Wed Dec 31 20:59:30 UTC 2025 I: Signed ./b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo as ./b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc Wed Dec 31 20:59:30 UTC 2025 - build #2 for r-bioc-wrench/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Dec 31 20:59:30 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-buGWSMKb, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e: total 96 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 14:34 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 28 14:36 b2 -rw-r--r-- 1 jenkins jenkins 2113 Aug 16 14:44 r-bioc-wrench_1.22.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 80913 Nov 28 14:34 rbuildlog.O9ds0KW /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1: total 188 -rw-r--r-- 1 jenkins jenkins 77320 Nov 28 14:34 build.log -rw-r--r-- 1 jenkins jenkins 5388 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2113 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 59576 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 10038 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10920 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1123 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1308 Nov 28 14:34 r-bioc-wrench_1.22.0+dfsg-1_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2: total 184 -rw-r--r-- 1 jenkins jenkins 79264 Nov 28 14:36 build.log -rw-r--r-- 1 jenkins jenkins 5388 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2113 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 59576 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 10038 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10920 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1123 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 1308 Nov 28 14:36 r-bioc-wrench_1.22.0+dfsg-1_source.changes Thu Nov 28 14:36:31 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Thu Nov 28 14:36:32 UTC 2024 I: r-bioc-wrench_1.22.0+dfsg-1_arm64.changes: Format: 1.8 Date: Fri, 16 Aug 2024 16:43:29 +0200 Source: r-bioc-wrench Binary: r-bioc-wrench Architecture: all Version: 1.22.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-wrench - GNU R wrench normalization for sparse count data Changes: r-bioc-wrench (1.22.0+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable Checksums-Sha1: c7b4b5cc0a43931d9bdc2c54a1001fe9d87895c3 59576 r-bioc-wrench_1.22.0+dfsg-1_all.deb 47b3ffab0ecd07b16ab5d13c24f6488315ac26cb 10038 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo Checksums-Sha256: ab60e6960ab97aab9ed5e929b8bf0a54633146b81f49a46ed315c8a4640ec24f 59576 r-bioc-wrench_1.22.0+dfsg-1_all.deb 7b8ef519d8c18cfba434d77e64e54721fda65426d5bc44cabcae81d9fe098a1b 10038 r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo Files: e253be2cfb3b9cb635f52bd77c1c68e1 59576 gnu-r optional r-bioc-wrench_1.22.0+dfsg-1_all.deb 38212d22a40395d3bd5a794f1b3c18ce 10038 gnu-r optional r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-28 14:34:31.963254513 +0000 +++ b2/build.log 2024-11-28 14:36:31.477853224 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Dec 31 08:56:49 -12 2025 -I: pbuilder-time-stamp: 1767214609 +I: Current time: Thu Jan 1 10:57:35 +14 2026 +I: pbuilder-time-stamp: 1767214655 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking r-bioc-wrench_1.22.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 31 20:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='ffe3b7d1a035477cbb410f22f5d43aef' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3239361' - PS1='# ' - PS2='> ' + INVOCATION_ID=e8cf81a3759443b59c503cbdffa4f35b + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2961469 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_pU35 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1 --logfile b1/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/pbuilderrc_1YY2 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2 --logfile b2/build.log r-bioc-wrench_1.22.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink01-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3239361/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -307,7 +339,7 @@ Get: 189 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] -Fetched 102 MB in 0s (230 MB/s) +Fetched 102 MB in 1s (97.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20083 files and directories currently installed.) @@ -938,8 +970,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Dec 31 20:57:14 UTC 2025. -Universal Time is now: Wed Dec 31 20:57:14 UTC 2025. +Local time is now: Wed Dec 31 20:58:32 UTC 2025. +Universal Time is now: Wed Dec 31 20:58:32 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... @@ -1121,7 +1153,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-bioc-wrench-1.22.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-wrench_1.22.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-bioc-wrench-1.22.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-wrench_1.22.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-wrench dpkg-buildpackage: info: source version 1.22.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -1195,12 +1231,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2961469/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3239361 and its subdirectories -I: Current time: Wed Dec 31 08:57:30 -12 2025 -I: pbuilder-time-stamp: 1767214650 +I: removing directory /srv/workspace/pbuilder/2961469 and its subdirectories +I: Current time: Thu Jan 1 10:59:30 +14 2026 +I: pbuilder-time-stamp: 1767214770 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.diff: 66.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.diff.gz b2/build.log: 81.1% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.6% -- replaced with stdout Thu Nov 28 14:36:33 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_r-bioc-wrench_trixie_arm64_1732804593 + touch /var/log/reproducible-builds/diffoscope_stamp_r-bioc-wrench_trixie_arm64_1732804593 + RESULT=0 + systemd-run '--description=diffoscope on r-bioc-wrench/1.22.0+dfsg-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_2-63543 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e --run-session -c jenkins-reproducible-trixie-diffoscope-69ecc15f-9afa-4594-b0cd-e2ffeac5cfb5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/dbd-tmp-eNQf8RB ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_2-63543.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/r-bioc-wrench_1.22.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DBho8L1e/b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.426s) 0.426s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.016s) 0.016s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 810ms CPU time consumed: 800ms _ _ _ _ __ | |__ (_) ___ ___ __ ___ __ ___ _ __ ___| |__ | '__|____| '_ \| |/ _ \ / __|___\ \ /\ / / '__/ _ \ '_ \ / __| '_ \ | | |_____| |_) | | (_) | (_|_____\ V V /| | | __/ | | | (__| | | | |_| |_.__/|_|\___/ \___| \_/\_/ |_| \___|_| |_|\___|_| |_| Thu Nov 28 14:36:35 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 28 14:36:35 UTC 2024 I: r-bioc-wrench from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-28 14:36:35] INFO: Starting at 2024-11-28 14:36:35.894069 [2024-11-28 14:36:35] INFO: Generating the pages of 1 package(s) [2024-11-28 14:36:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:36] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/r-bioc-wrench didn't produce a buildlog, even though it has been built. [2024-11-28 14:36:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:36] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/r-bioc-wrench_1.24.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/r-bioc-wrench_1.24.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:36] INFO: Finished at 2024-11-28 14:36:36.655610, took: 0:00:00.761548 Thu Nov 28 14:36:36 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/r-bioc-wrench.html Thu Nov 28 14:36:36 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 28 14:36:36 UTC 2024 I: Submitting 12K b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc https://buildinfo.debian.net/47b3ffab0ecd07b16ab5d13c24f6488315ac26cb/r-bioc-wrench_1.22.0+dfsg-1_all Thu Nov 28 14:36:37 UTC 2024 I: Submitting 12K b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc https://buildinfo.debian.net/6f1cf7d2769f6f0283ec726b4026d7331d2aa3a1/r-bioc-wrench_1.22.0+dfsg-1_all Thu Nov 28 14:36:39 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 28 14:36:39 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 28 14:36:39 UTC 2024 I: Removing signed r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc files: removed './b1/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc' removed './b2/r-bioc-wrench_1.22.0+dfsg-1_arm64.buildinfo.asc' 1732804599 arm64 trixie r-bioc-wrench Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.rbuild.log: 79.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-wrench_1.22.0+dfsg-1.rbuild.log.gz [2024-11-28 14:36:39] INFO: Starting at 2024-11-28 14:36:39.374955 [2024-11-28 14:36:39] INFO: Generating the pages of 1 package(s) [2024-11-28 14:36:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-wrench_1.22.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-wrench_1.22.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:39] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/i386/r-bioc-wrench_1.24.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/i386/r-bioc-wrench_1.24.0+dfsg-1.diff.gz is missing [2024-11-28 14:36:39] INFO: Finished at 2024-11-28 14:36:39.966252, took: 0:00:00.591312 All cleanup done. Thu Nov 28 14:36:40 UTC 2024 - total duration: 0h 2m 56s. Thu Nov 28 14:36:40 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-hnShq9SN, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 1.253s CPU time consumed: 8.600s