Running as unit: rb-build-arm64_2-75052.service ==================================================================================== Fri Feb 21 19:16:30 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_2) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Fri Feb 21 19:16:30 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-hedbfsDq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 19:16:30 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Feb 21 19:16:30 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-jedX6t' Fri Feb 21 19:16:31 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Feb 21 19:16:31 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-XAHlDL' ok, let's check if cif2hkl is building anywhere yet… ok, cif2hkl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of cif2hkl in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Feb 21 19:16:41 UTC 2025 I: starting to build cif2hkl/trixie/arm64 on jenkins on '2025-02-21 19:16' Fri Feb 21 19:16:41 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_2/75052/console.log 1740165401 arm64 trixie cif2hkl Fri Feb 21 19:16:41 UTC 2025 I: Downloading source for trixie/cif2hkl=1.4.6+ds1-1 --2025-02-21 19:16:41-- http://deb.debian.org/debian/pool/main/c/cif2hkl/cif2hkl_1.4.6%2bds1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) [text/prs.lines.tag] Saving to: ‘cif2hkl_1.4.6+ds1-1.dsc’ 0K .. 100% 337M=0s 2025-02-21 19:16:41 (337 MB/s) - ‘cif2hkl_1.4.6+ds1-1.dsc’ saved [2101/2101] --2025-02-21 19:16:41-- http://deb.debian.org/debian/pool/main/c/cif2hkl/cif2hkl_1.4.6%2bds1-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2101 (2.1K) [text/prs.lines.tag] Saving to: ‘cif2hkl_1.4.6+ds1-1.dsc’ 0K .. 100% 337M=0s 2025-02-21 19:16:41 (337 MB/s) - ‘cif2hkl_1.4.6+ds1-1.dsc’ saved [2101/2101] Fri Feb 21 19:16:41 UTC 2025 I: cif2hkl_1.4.6+ds1-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: cif2hkl Binary: cif2hkl Architecture: any Version: 1.4.6+ds1-1 Maintainer: Debian Science Maintainers Uploaders: Emmanuel Farhi , Roland Mas Homepage: https://gitlab.com/soleil-data-treatment/soleil-software-projects/cif2hkl Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/science-team/cif2hkl Vcs-Git: https://salsa.debian.org/science-team/cif2hkl.git Build-Depends: debhelper-compat (= 13), fort77, gfortran, help2man Package-List: cif2hkl deb science optional arch=any Checksums-Sha1: c252cb85c616256e6d1ece6976767fbb2f55dc3c 422968 cif2hkl_1.4.6+ds1.orig.tar.xz 2d2afbfbe65fe408ea05730a9b8355e48f4bf344 3824 cif2hkl_1.4.6+ds1-1.debian.tar.xz Checksums-Sha256: 931e482dfef2a12320023bd14bb1537d24502cf9802887ac43775c0cf4e664a7 422968 cif2hkl_1.4.6+ds1.orig.tar.xz 3c035c4b8a4ddc45ce8cc35c441dc64a47aa9bbd6c428a29eaf2530bea7d4c32 3824 cif2hkl_1.4.6+ds1-1.debian.tar.xz Files: 6492ef1076f3009a8acbbb077cd20439 422968 cif2hkl_1.4.6+ds1.orig.tar.xz 713bfb0a75a25bc0bfe286821b91c061 3824 cif2hkl_1.4.6+ds1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJPBAEBCgA5FiEEdL9yRHPwebcau4Z+KV68i1oUpbYFAmew4tMbHGVtbWFudWVs LmZhcmhpLjFAZ21haWwuY29tAAoJEClevItaFKW2TlIP/RtVpQF5qb93dDMymOwF iPaotWBSqKx9+m3bE1PyJXUrU5Q2ErDP7hHTvXpSxhbDf2MPYk2sbSR8RkBMtuKR Z4jUrtEu3fP6v3ndUz/Jxon4ESYPAclmn9tmDmIgOWrU8uv/dGqt0s0Mopcky5Mf CsoTAAq6QGUqmdECBFaLEkrUYr/xoa+xVFoZ9+z36EppGQaqPcvilSz65dEjGxEZ Y2zAy+WwcRLQq8p5TY65MprNuwZyKL8RaygZ53o9oM/9Uo/q36SF5awP7P7p1SrB gozbZ8+lyGbM2ShmoDHf7LHxRttS2qAEIfBIqxw6LY9vrt1OxVloa/EEuv7OPLHh +B9Vv+xWYv9z9UbqBBS7XhQVGZc6+04k6/giDNCxRjakyWE3fKGHoVuNs7yx8UMT 0yAS5WOYciWAfusQSTq5uuhFUNqtsM/qbpKHiToRy95LSVcMNMMz73L7t/ODv4JN n7E3TzoiT6GF+ZpQKib6Ur93vGk0YO8aPmNzMKzBAH65eDq9Z4zYoCGUpKTjD3HG vQny3F2tSd8oYoTb8V8ImmDAOKrEK6jkt6IQaPGiwW1j7g2PwcAgse5uznGa4SDV aqj3B8b2k2lIbx4q457tb26cM6MAqOPE9prvTM9qiEd3iOLcnlmYpd73wKHHcsdU +parapBmVC92HOPo434Es+Gs =THuE -----END PGP SIGNATURE----- Fri Feb 21 19:16:41 UTC 2025 I: Checking whether the package is not for us Fri Feb 21 19:16:41 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Feb 21 19:16:41 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Feb 21 19:16:41 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Feb 21 19:16:41 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-VsQOJE' ==================================================================================== Fri Mar 27 01:39:42 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 cif2hkl trixie /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV 1.4.6+ds1-1" as arguments. Fri Mar 27 01:39:42 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-4Yz2rcgL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Mar 27 01:39:42 UTC 2026 I: Downloading source for trixie/cif2hkl=1.4.6+ds1-1 Reading package lists... NOTICE: 'cif2hkl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cif2hkl.git Please use: git clone https://salsa.debian.org/science-team/cif2hkl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 429 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (dsc) [2101 B] Get:2 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (tar) [423 kB] Get:3 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (diff) [3824 B] Fetched 429 kB in 0s (5769 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'cif2hkl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cif2hkl.git Please use: git clone https://salsa.debian.org/science-team/cif2hkl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 429 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (dsc) [2101 B] Get:2 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (tar) [423 kB] Get:3 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (diff) [3824 B] Fetched 429 kB in 0s (5769 kB/s) Download complete and in download only mode ============================================================================= Building cif2hkl in trixie on arm64 on codethink03-arm64 now. Date: Fri Mar 27 01:39:43 GMT 2026 Date UTC: Fri Mar 27 01:39:43 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 13:39:43 -12 2026 I: pbuilder-time-stamp: 1774575583 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cif2hkl_1.4.6+ds1-1.dsc] I: copying [./cif2hkl_1.4.6+ds1.orig.tar.xz] I: copying [./cif2hkl_1.4.6+ds1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cif2hkl_1.4.6+ds1-1.dsc: unsupported subcommand dpkg-source: info: extracting cif2hkl in cif2hkl-1.4.6+ds1 dpkg-source: info: unpacking cif2hkl_1.4.6+ds1.orig.tar.xz dpkg-source: info: unpacking cif2hkl_1.4.6+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Improve-layout-of-cif2hkl-help-to-make-manpage-more-.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a4c2fb0a5c4a4e04a1acf999328cb6b1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2337095' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_iRUr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1 --logfile b1/build.log cif2hkl_1.4.6+ds1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), fort77, gfortran, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fort77; however: Package fort77 is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} f2c{a} file{a} fort77{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libf2c2{a} libf2c2-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 31.4 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libf2c2 arm64 20240504-1+b2 [115 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libf2c2-dev arm64 20240504-1+b2 [126 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 f2c arm64 20240504-1+b1 [243 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 fort77 all 1.15-13 [6636 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-16 [418 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-16 [9795 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-16 [13.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 42 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 31.4 MB in 0s (79.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-3_all.deb ... Unpacking automake (1:1.17-3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.24.1_all.deb ... Unpacking libdebhelper-perl (13.24.1) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-3_all.deb ... Unpacking libtool (2.5.4-3) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... 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Unpacking gfortran-14 (14.2.0-16) ... Selecting previously unselected package gfortran-aarch64-linux-gnu. Preparing to unpack .../39-gfortran-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gfortran. Preparing to unpack .../40-gfortran_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran (4:14.2.0-1) ... Selecting previously unselected package help2man. Preparing to unpack .../41-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libf2c2:arm64 (20240504-1+b2) ... Setting up libf2c2-dev:arm64 (20240504-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-16) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up f2c (20240504-1+b1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up fort77 (1.15-13) ... update-alternatives: using /usr/bin/fort77 to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-16) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up gfortran-14 (14.2.0-16) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/cif2hkl-1.4.6+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cif2hkl_1.4.6+ds1-1_source.changes dpkg-buildpackage: info: source package cif2hkl dpkg-buildpackage: info: source version 1.4.6+ds1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Farhi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' rm -f *.o *.mod cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_build override_dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' f77 -ffree-line-length-512 \ CFML/CFML_GlobalDeps_Linux.f90 CFML/CFML_Math_General.f90 \ CFML/CFML_String_Utilities_gf.f90 CFML/CFML_Math_3D.f90 \ CFML/CFML_Symmetry_Tables.f90 CFML/CFML_Scattering_Chemical_Tables.f90 \ CFML/CFML_Crystallographic_Symmetry.f90 CFML/CFML_Crystal_Metrics.f90 \ CFML/CFML_Reflections_Utilities.f90 CFML/CFML_Atom_TypeDef.f90 \ CFML/CFML_Geometry_Calc.f90 CFML/CFML_Molecular_Crystals.f90 \ CFML/CFML_Diffraction_Patterns.f90 CFML/CFML_Magnetic_Groups.f90 \ CFML/CFML_EisPack.f90 CFML/CFML_IO_Formats.f90 \ CFML/CFML_Structure_Factors.f90 -o cif2hkl cif2hkl.F90 -lm -g -O2 -ffile-prefix-map=/build/reproducible-path/cif2hkl-1.4.6+ds1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 CFML/CFML_EisPack.f90:7617:16: 7532 | do k = n, 1, -1 | 2 ...... 7617 | y = w(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_EisPack.f90:7618:18: 7532 | do k = n, 1, -1 | 2 ...... 7618 | g = rv1(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_IO_Formats.f90:4848:40: 4848 | aniso_lugar(8)=j | 1 Warning: Array reference at (1) is out of bounds (8 > 7) in dimension 1 rm *.mod make[2]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' help2man --output=cif2hkl.1 --version-string=$(dpkg-parsechangelog -S Version | sed -e s/-[^-]*$// -e s/[+].*//) --no-discard-stderr --no-info --name=cif2hkl ./cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' ./cif2hkl --version ./cif2hkl 1.4.6 (Dec 4th 2024) by Farhi E. [emmanuel.farhi@synchrotron-soleil.fr] using crysFML Copyright (C) 2009-2019 Institut Laue Langevin, EUPL. Copyright (C) 2020- Synchrotron Soleil, GPL3. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ./cif2hkl --verbose --xtal --no-output-files examples/CaF2.cfl file='examples/CaF2.cfl'; % cell [ a b c alpha beta gamma ] cell=[ 5.46693 5.46693 5.46693 90.00000 90.00000 90.00000]; Spgr='F m -3 m'; % space group [Number 225] % [ x/a y/b z/c Biso Occ Spin Charge ] Ca1=[ 0.00000 0.00000 0.00000 3.60050 0.04167 0.00000 2.00000]; F1=[ 0.25000 0.25000 0.25000 -3.68972 0.02083 0.00000 -1.00000]; title='Ca4 F8 [F m -3 m, Cubic, Centric (-1 at origin)]'; Test OK make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/cif2hkl/ make -j12 install DESTDIR=/build/reproducible-path/cif2hkl-1.4.6\+ds1/debian/cif2hkl AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' install -D cif2hkl \ /build/reproducible-path/cif2hkl-1.4.6+ds1/debian/cif2hkl/usr/bin/cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cif2hkl-dbgsym' in '../cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb'. dpkg-deb: building package 'cif2hkl' in '../cif2hkl_1.4.6+ds1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2337095 and its subdirectories I: Current time: Thu Mar 26 13:44:27 -12 2026 I: pbuilder-time-stamp: 1774575867 Fri Mar 27 01:44:27 UTC 2026 I: Signing ./b1/cif2hkl_1.4.6+ds1-1_arm64.buildinfo as cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc Fri Mar 27 01:44:27 UTC 2026 I: Signed ./b1/cif2hkl_1.4.6+ds1-1_arm64.buildinfo as ./b1/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc Fri Mar 27 01:44:27 UTC 2026 - build #1 for cif2hkl/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Mar 27 01:44:27 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-4Yz2rcgL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:21 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:16 b2 -rw-r--r-- 1 jenkins jenkins 2101 Feb 15 19:01 cif2hkl_1.4.6+ds1-1.dsc -rw------- 1 jenkins jenkins 3228 Feb 21 19:16 rbuildlog.b2jUanE /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1: total 2140 -rw-r--r-- 1 jenkins jenkins 26377 Feb 21 19:21 build.log -rw-r--r-- 1 jenkins jenkins 959984 Feb 21 19:21 cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3824 Feb 21 19:21 cif2hkl_1.4.6+ds1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2101 Feb 21 19:21 cif2hkl_1.4.6+ds1-1.dsc -rw-r--r-- 1 jenkins jenkins 5250 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6132 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1418 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 737872 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1528 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_source.changes -rw-r--r-- 1 jenkins jenkins 422968 Feb 21 19:21 cif2hkl_1.4.6+ds1.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2: total 0 Fri Feb 21 19:21:28 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Mar 26 13:39:43 -12 2026 I: pbuilder-time-stamp: 1774575583 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cif2hkl_1.4.6+ds1-1.dsc] I: copying [./cif2hkl_1.4.6+ds1.orig.tar.xz] I: copying [./cif2hkl_1.4.6+ds1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cif2hkl_1.4.6+ds1-1.dsc: unsupported subcommand dpkg-source: info: extracting cif2hkl in cif2hkl-1.4.6+ds1 dpkg-source: info: unpacking cif2hkl_1.4.6+ds1.orig.tar.xz dpkg-source: info: unpacking cif2hkl_1.4.6+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Improve-layout-of-cif2hkl-help-to-make-manpage-more-.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='a4c2fb0a5c4a4e04a1acf999328cb6b1' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2337095' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_iRUr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1 --logfile b1/build.log cif2hkl_1.4.6+ds1-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), fort77, gfortran, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fort77; however: Package fort77 is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} f2c{a} file{a} fort77{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libf2c2{a} libf2c2-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 31.4 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libf2c2 arm64 20240504-1+b2 [115 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libf2c2-dev arm64 20240504-1+b2 [126 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 f2c arm64 20240504-1+b1 [243 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 fort77 all 1.15-13 [6636 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-16 [418 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-16 [9795 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-16 [13.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 42 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 31.4 MB in 0s (79.8 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... 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Unpacking gfortran-14 (14.2.0-16) ... Selecting previously unselected package gfortran-aarch64-linux-gnu. Preparing to unpack .../39-gfortran-aarch64-linux-gnu_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Selecting previously unselected package gfortran. Preparing to unpack .../40-gfortran_4%3a14.2.0-1_arm64.deb ... Unpacking gfortran (4:14.2.0-1) ... Selecting previously unselected package help2man. Preparing to unpack .../41-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-3) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.1) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-5) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.23.1-1) ... Setting up libgfortran5:arm64 (14.2.0-16) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libf2c2:arm64 (20240504-1+b2) ... Setting up libf2c2-dev:arm64 (20240504-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.17-3) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-16) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up f2c (20240504-1+b1) ... Setting up gettext (0.23.1-1) ... Setting up libtool (2.5.4-3) ... Setting up fort77 (1.15-13) ... update-alternatives: using /usr/bin/fort77 to provide /usr/bin/f77 (f77) in auto mode Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-16) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up gfortran-14 (14.2.0-16) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up debhelper (13.24.1) ... Processing triggers for libc-bin (2.40-6) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: Running cd /build/reproducible-path/cif2hkl-1.4.6+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cif2hkl_1.4.6+ds1-1_source.changes dpkg-buildpackage: info: source package cif2hkl dpkg-buildpackage: info: source version 1.4.6+ds1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Farhi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' rm -f *.o *.mod cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_build override_dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' f77 -ffree-line-length-512 \ CFML/CFML_GlobalDeps_Linux.f90 CFML/CFML_Math_General.f90 \ CFML/CFML_String_Utilities_gf.f90 CFML/CFML_Math_3D.f90 \ CFML/CFML_Symmetry_Tables.f90 CFML/CFML_Scattering_Chemical_Tables.f90 \ CFML/CFML_Crystallographic_Symmetry.f90 CFML/CFML_Crystal_Metrics.f90 \ CFML/CFML_Reflections_Utilities.f90 CFML/CFML_Atom_TypeDef.f90 \ CFML/CFML_Geometry_Calc.f90 CFML/CFML_Molecular_Crystals.f90 \ CFML/CFML_Diffraction_Patterns.f90 CFML/CFML_Magnetic_Groups.f90 \ CFML/CFML_EisPack.f90 CFML/CFML_IO_Formats.f90 \ CFML/CFML_Structure_Factors.f90 -o cif2hkl cif2hkl.F90 -lm -g -O2 -ffile-prefix-map=/build/reproducible-path/cif2hkl-1.4.6+ds1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 CFML/CFML_EisPack.f90:7617:16: 7532 | do k = n, 1, -1 | 2 ...... 7617 | y = w(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_EisPack.f90:7618:18: 7532 | do k = n, 1, -1 | 2 ...... 7618 | g = rv1(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_IO_Formats.f90:4848:40: 4848 | aniso_lugar(8)=j | 1 Warning: Array reference at (1) is out of bounds (8 > 7) in dimension 1 rm *.mod make[2]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' help2man --output=cif2hkl.1 --version-string=$(dpkg-parsechangelog -S Version | sed -e s/-[^-]*$// -e s/[+].*//) --no-discard-stderr --no-info --name=cif2hkl ./cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' ./cif2hkl --version ./cif2hkl 1.4.6 (Dec 4th 2024) by Farhi E. [emmanuel.farhi@synchrotron-soleil.fr] using crysFML Copyright (C) 2009-2019 Institut Laue Langevin, EUPL. Copyright (C) 2020- Synchrotron Soleil, GPL3. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ./cif2hkl --verbose --xtal --no-output-files examples/CaF2.cfl file='examples/CaF2.cfl'; % cell [ a b c alpha beta gamma ] cell=[ 5.46693 5.46693 5.46693 90.00000 90.00000 90.00000]; Spgr='F m -3 m'; % space group [Number 225] % [ x/a y/b z/c Biso Occ Spin Charge ] Ca1=[ 0.00000 0.00000 0.00000 3.60050 0.04167 0.00000 2.00000]; F1=[ 0.25000 0.25000 0.25000 -3.68972 0.02083 0.00000 -1.00000]; title='Ca4 F8 [F m -3 m, Cubic, Centric (-1 at origin)]'; Test OK make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/cif2hkl/ make -j12 install DESTDIR=/build/reproducible-path/cif2hkl-1.4.6\+ds1/debian/cif2hkl AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' install -D cif2hkl \ /build/reproducible-path/cif2hkl-1.4.6+ds1/debian/cif2hkl/usr/bin/cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cif2hkl-dbgsym' in '../cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb'. dpkg-deb: building package 'cif2hkl' in '../cif2hkl_1.4.6+ds1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2337095 and its subdirectories I: Current time: Thu Mar 26 13:44:27 -12 2026 I: pbuilder-time-stamp: 1774575867 Fri Feb 21 19:21:29 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Feb 21 19:21:29 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Feb 21 19:21:29 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Feb 21 19:21:29 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-6bzYtD' ==================================================================================== Fri Feb 21 19:21:31 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 cif2hkl trixie /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV 1.4.6+ds1-1" as arguments. Fri Feb 21 19:21:31 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-pgfrTVaz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Feb 21 19:21:31 UTC 2025 I: Downloading source for trixie/cif2hkl=1.4.6+ds1-1 Reading package lists... NOTICE: 'cif2hkl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cif2hkl.git Please use: git clone https://salsa.debian.org/science-team/cif2hkl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 429 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (dsc) [2101 B] Get:2 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (tar) [423 kB] Get:3 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (diff) [3824 B] Fetched 429 kB in 0s (20.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'cif2hkl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/science-team/cif2hkl.git Please use: git clone https://salsa.debian.org/science-team/cif2hkl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 429 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (dsc) [2101 B] Get:2 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (tar) [423 kB] Get:3 http://deb.debian.org/debian trixie/main cif2hkl 1.4.6+ds1-1 (diff) [3824 B] Fetched 429 kB in 0s (20.7 MB/s) Download complete and in download only mode ============================================================================= Re-Building cif2hkl in trixie on arm64 on codethink04-arm64 now. Date: Fri Feb 21 19:21:31 GMT 2025 Date UTC: Fri Feb 21 19:21:31 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_K2He + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' cif2hkl = debian-installer -o cif2hkl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' cif2hkl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_K2He --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2 --logfile b2/build.log cif2hkl_1.4.6+ds1-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Feb 22 09:21:31 +14 2025 I: pbuilder-time-stamp: 1740165691 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [cif2hkl_1.4.6+ds1-1.dsc] I: copying [./cif2hkl_1.4.6+ds1.orig.tar.xz] I: copying [./cif2hkl_1.4.6+ds1-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./cif2hkl_1.4.6+ds1-1.dsc: unsupported subcommand dpkg-source: info: extracting cif2hkl in cif2hkl-1.4.6+ds1 dpkg-source: info: unpacking cif2hkl_1.4.6+ds1.orig.tar.xz dpkg-source: info: unpacking cif2hkl_1.4.6+ds1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 0001-Improve-layout-of-cif2hkl-help-to-make-manpage-more-.patch I: using fakeroot in build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Feb 21 19:21 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=508e48b13e684e8b9910762239d7e83a LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2991301 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_K2He --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2 --logfile b2/build.log cif2hkl_1.4.6+ds1-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), fort77, gfortran, help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on fort77; however: Package fort77 is not installed. pbuilder-satisfydepends-dummy depends on gfortran; however: Package gfortran is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} f2c{a} file{a} fort77{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libf2c2{a} libf2c2-dev{a} libfile-stripnondeterminism-perl{a} libgfortran-14-dev{a} libgfortran5{a} libicu72{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 31.4 MB of archives. After unpacking 121 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-3 [92.0 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-3 [862 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-1 [770 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.1 [90.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-3 [539 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.1 [920 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libf2c2 arm64 20240504-1+b2 [115 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libf2c2-dev arm64 20240504-1+b2 [126 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 f2c arm64 20240504-1+b1 [243 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 fort77 all 1.15-13 [6636 B] Get: 36 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-16 [361 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-16 [418 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-16 [9795 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-16 [13.6 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 42 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 31.4 MB in 0s (169 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.4-3_arm64.deb ... Unpacking bsdextrautils (2.40.4-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.17-3_all.deb ... 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Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps Reading package lists... Building dependency tree... Reading state information... fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/cif2hkl-1.4.6+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cif2hkl_1.4.6+ds1-1_source.changes dpkg-buildpackage: info: source package cif2hkl dpkg-buildpackage: info: source version 1.4.6+ds1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Emmanuel Farhi dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 distclean make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' rm -f *.o *.mod cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_build override_dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[2]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' f77 -ffree-line-length-512 \ CFML/CFML_GlobalDeps_Linux.f90 CFML/CFML_Math_General.f90 \ CFML/CFML_String_Utilities_gf.f90 CFML/CFML_Math_3D.f90 \ CFML/CFML_Symmetry_Tables.f90 CFML/CFML_Scattering_Chemical_Tables.f90 \ CFML/CFML_Crystallographic_Symmetry.f90 CFML/CFML_Crystal_Metrics.f90 \ CFML/CFML_Reflections_Utilities.f90 CFML/CFML_Atom_TypeDef.f90 \ CFML/CFML_Geometry_Calc.f90 CFML/CFML_Molecular_Crystals.f90 \ CFML/CFML_Diffraction_Patterns.f90 CFML/CFML_Magnetic_Groups.f90 \ CFML/CFML_EisPack.f90 CFML/CFML_IO_Formats.f90 \ CFML/CFML_Structure_Factors.f90 -o cif2hkl cif2hkl.F90 -lm -g -O2 -ffile-prefix-map=/build/reproducible-path/cif2hkl-1.4.6+ds1=. -fstack-protector-strong -fstack-clash-protection -mbranch-protection=standard -Wl,-z,relro -Wdate-time -D_FORTIFY_SOURCE=2 CFML/CFML_EisPack.f90:7617:16: 7532 | do k = n, 1, -1 | 2 ...... 7617 | y = w(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_EisPack.f90:7618:18: 7532 | do k = n, 1, -1 | 2 ...... 7618 | g = rv1(k-1) | 1 Warning: Array reference at (1) out of bounds (0 < 1) in loop beginning at (2) CFML/CFML_IO_Formats.f90:4848:40: 4848 | aniso_lugar(8)=j | 1 Warning: Array reference at (1) is out of bounds (8 > 7) in dimension 1 rm *.mod make[2]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' help2man --output=cif2hkl.1 --version-string=$(dpkg-parsechangelog -S Version | sed -e s/-[^-]*$// -e s/[+].*//) --no-discard-stderr --no-info --name=cif2hkl ./cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_auto_test make -j12 test make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' ./cif2hkl --version ./cif2hkl 1.4.6 (Dec 4th 2024) by Farhi E. [emmanuel.farhi@synchrotron-soleil.fr] using crysFML Copyright (C) 2009-2019 Institut Laue Langevin, EUPL. Copyright (C) 2020- Synchrotron Soleil, GPL3. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. ./cif2hkl --verbose --xtal --no-output-files examples/CaF2.cfl file='examples/CaF2.cfl'; % cell [ a b c alpha beta gamma ] cell=[ 5.46693 5.46693 5.46693 90.00000 90.00000 90.00000]; Spgr='F m -3 m'; % space group [Number 225] % [ x/a y/b z/c Biso Occ Spin Charge ] Ca1=[ 0.00000 0.00000 0.00000 3.60050 0.04167 0.00000 2.00000]; F1=[ 0.25000 0.25000 0.25000 -3.68972 0.02083 0.00000 -1.00000]; title='Ca4 F8 [F m -3 m, Cubic, Centric (-1 at origin)]'; Test OK make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/cif2hkl/ make -j12 install DESTDIR=/build/reproducible-path/cif2hkl-1.4.6\+ds1/debian/cif2hkl AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' install -D cif2hkl \ /build/reproducible-path/cif2hkl-1.4.6+ds1/debian/cif2hkl/usr/bin/cif2hkl make[1]: Leaving directory '/build/reproducible-path/cif2hkl-1.4.6+ds1' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'cif2hkl-dbgsym' in '../cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb'. dpkg-deb: building package 'cif2hkl' in '../cif2hkl_1.4.6+ds1-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.buildinfo dpkg-genchanges --build=binary -O../cif2hkl_1.4.6+ds1-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2991301 and its subdirectories I: Current time: Sat Feb 22 09:23:50 +14 2025 I: pbuilder-time-stamp: 1740165830 + false + set +x Fri Feb 21 19:23:50 UTC 2025 I: Signing ./b2/cif2hkl_1.4.6+ds1-1_arm64.buildinfo as cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc Fri Feb 21 19:23:50 UTC 2025 I: Signed ./b2/cif2hkl_1.4.6+ds1-1_arm64.buildinfo as ./b2/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc Fri Feb 21 19:23:50 UTC 2025 - build #2 for cif2hkl/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Feb 21 19:23:50 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-pgfrTVaz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV: total 44 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:21 b1 drwxr-xr-x 2 jenkins jenkins 4096 Feb 21 19:23 b2 -rw-r--r-- 1 jenkins jenkins 2101 Feb 15 19:01 cif2hkl_1.4.6+ds1-1.dsc -rw------- 1 jenkins jenkins 29906 Feb 21 19:21 rbuildlog.b2jUanE /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1: total 2152 -rw-r--r-- 1 jenkins jenkins 26377 Feb 21 19:21 build.log -rw-r--r-- 1 jenkins jenkins 959984 Feb 21 19:21 cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3824 Feb 21 19:21 cif2hkl_1.4.6+ds1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2101 Feb 21 19:21 cif2hkl_1.4.6+ds1-1.dsc -rw-r--r-- 1 jenkins jenkins 5250 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6132 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1418 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 737872 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1528 Feb 21 19:21 cif2hkl_1.4.6+ds1-1_source.changes -rw-r--r-- 1 jenkins jenkins 422968 Feb 21 19:21 cif2hkl_1.4.6+ds1.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2: total 2140 -rw-r--r-- 1 jenkins jenkins 28319 Feb 21 19:23 build.log -rw-r--r-- 1 jenkins jenkins 959984 Feb 21 19:23 cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3824 Feb 21 19:23 cif2hkl_1.4.6+ds1-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2101 Feb 21 19:23 cif2hkl_1.4.6+ds1-1.dsc -rw-r--r-- 1 jenkins jenkins 5250 Feb 21 19:23 cif2hkl_1.4.6+ds1-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6132 Feb 21 19:23 cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1418 Feb 21 19:23 cif2hkl_1.4.6+ds1-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 737872 Feb 21 19:23 cif2hkl_1.4.6+ds1-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1528 Feb 21 19:23 cif2hkl_1.4.6+ds1-1_source.changes -rw-r--r-- 1 jenkins jenkins 422968 Feb 21 19:23 cif2hkl_1.4.6+ds1.orig.tar.xz Fri Feb 21 19:23:51 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Feb 21 19:23:52 UTC 2025 I: cif2hkl_1.4.6+ds1-1_arm64.changes: Format: 1.8 Date: Fri, 14 Feb 2025 20:06:25 +0100 Source: cif2hkl Binary: cif2hkl cif2hkl-dbgsym Architecture: arm64 Version: 1.4.6+ds1-1 Distribution: unstable Urgency: medium Maintainer: Debian Science Maintainers Changed-By: Emmanuel Farhi Description: cif2hkl - Convert crystallographic descriptions into HKL F^2 reflection lis Changes: cif2hkl (1.4.6+ds1-1) unstable; urgency=medium . [ Emmanuel FARHI ] * New upstream version 1.4.6+ds1 Checksums-Sha1: 948bca54d69793f7ddbafdc9fc2d08611b5b8a74 959984 cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb 441e612eff38b68f20eaea4097cad6fa8069ffdd 5250 cif2hkl_1.4.6+ds1-1_arm64.buildinfo 1b6e8eefca9e6d44db5faa5ffc5f8e3868cb021c 737872 cif2hkl_1.4.6+ds1-1_arm64.deb Checksums-Sha256: 53e3bd337d6491c50fc8a68477ebac4b617793e7cd26a79a779e347dd747786e 959984 cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb 46f86db9d7d9dd468f4026624f7cb5c7e02228b59fcb2fb43541bfbe4c4a7cfe 5250 cif2hkl_1.4.6+ds1-1_arm64.buildinfo 48c970756bc8e57101e9fca2aa0b183a669e3b1789e24904c54c338813d973d0 737872 cif2hkl_1.4.6+ds1-1_arm64.deb Files: 703f29fad9d5c982947b39dfbba75b54 959984 debug optional cif2hkl-dbgsym_1.4.6+ds1-1_arm64.deb d27956fd80b73dc529715e4a14012a3c 5250 science optional cif2hkl_1.4.6+ds1-1_arm64.buildinfo fb81c2228ca7733bb12b6d30f8cdded0 737872 science optional cif2hkl_1.4.6+ds1-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/cif2hkl_1.4.5+ds1-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/cif2hkl_1.4.5+ds1-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/cif2hkl_1.4.5+ds1-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/cif2hkl_1.4.5+ds1-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/cif2hkl_1.4.5+ds1-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/cif2hkl_1.4.5+ds1-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-02-21 19:21:28.695780636 +0000 +++ b2/build.log 2025-02-21 19:23:51.249294043 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Mar 26 13:39:43 -12 2026 -I: pbuilder-time-stamp: 1774575583 +I: Current time: Sat Feb 22 09:21:31 +14 2025 +I: pbuilder-time-stamp: 1740165691 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying 0001-Improve-layout-of-cif2hkl-help-to-make-manpage-more-.patch I: using fakeroot in build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Feb 21 19:21 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='a4c2fb0a5c4a4e04a1acf999328cb6b1' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2337095' - PS1='# ' - PS2='> ' + INVOCATION_ID=508e48b13e684e8b9910762239d7e83a + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2991301 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_iRUr --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1 --logfile b1/build.log cif2hkl_1.4.6+ds1-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/pbuilderrc_K2He --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2 --logfile b2/build.log cif2hkl_1.4.6+ds1-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-31-cloud-arm64 #1 SMP Debian 6.1.128-1 (2025-02-07) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2337095/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -153,7 +185,7 @@ Get: 40 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 41 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 42 http://deb.debian.org/debian trixie/main arm64 help2man arm64 1.49.3+b1 [198 kB] -Fetched 31.4 MB in 0s (79.8 MB/s) +Fetched 31.4 MB in 0s (169 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19923 files and directories currently installed.) @@ -344,7 +376,11 @@ fakeroot is already the newest version (1.37-1). 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. I: Building the package -I: Running cd /build/reproducible-path/cif2hkl-1.4.6+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../cif2hkl_1.4.6+ds1-1_source.changes +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/cif2hkl-1.4.6+ds1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../cif2hkl_1.4.6+ds1-1_source.changes dpkg-buildpackage: info: source package cif2hkl dpkg-buildpackage: info: source version 1.4.6+ds1-1 dpkg-buildpackage: info: source distribution unstable @@ -469,12 +505,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2991301/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2337095 and its subdirectories -I: Current time: Thu Mar 26 13:44:27 -12 2026 -I: pbuilder-time-stamp: 1774575867 +I: removing directory /srv/workspace/pbuilder/2991301 and its subdirectories +I: Current time: Sat Feb 22 09:23:50 +14 2025 +I: pbuilder-time-stamp: 1740165830 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/cif2hkl_1.4.6+ds1-1.diff: 66.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/cif2hkl_1.4.6+ds1-1.diff.gz b2/build.log: 74.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.0% -- replaced with stdout Fri Feb 21 19:23:53 UTC 2025 I: diffoscope 288 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_cif2hkl_trixie_arm64_1740165833 + touch /var/log/reproducible-builds/diffoscope_stamp_cif2hkl_trixie_arm64_1740165833 + RESULT=0 + systemd-run '--description=diffoscope on cif2hkl/1.4.6+ds1-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_2-75052 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV --run-session -c jenkins-reproducible-trixie-diffoscope-7966fd89-5108-4352-8d7b-5db512023af2 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/dbd-tmp-4CWALy4 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1/cif2hkl_1.4.6+ds1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2/cif2hkl_1.4.6+ds1-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_2-75052.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/cif2hkl_1.4.6+ds1-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b1/cif2hkl_1.4.6+ds1-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.cUi0NnsV/b2/cif2hkl_1.4.6+ds1-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.004s) 0.004s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 272ms CPU time consumed: 273ms _ __ ____ _ _ _ ___(_)/ _|___ \| |__ | | _| | / __| | |_ __) | '_ \| |/ / | | (__| | _|/ __/| | | | <| | \___|_|_| |_____|_| |_|_|\_\_| Fri Feb 21 19:23:53 UTC 2025 I: diffoscope 288 found no differences in the changes files, and a .buildinfo file also exists. Fri Feb 21 19:23:53 UTC 2025 I: cif2hkl from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-02-21 19:23:54] INFO: Starting at 2025-02-21 19:23:54.457665 [2025-02-21 19:23:54] INFO: Generating the pages of 1 package(s) [2025-02-21 19:23:54] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/cif2hkl didn't produce a buildlog, even though it has been built. [2025-02-21 19:23:54] INFO: Finished at 2025-02-21 19:23:54.705865, took: 0:00:00.248208 Fri Feb 21 19:23:54 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/cif2hkl.html Fri Feb 21 19:23:54 UTC 2025 I: Submitting .buildinfo files to external archives: Fri Feb 21 19:23:54 UTC 2025 I: Submitting 8.0K b1/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc https://buildinfo.debian.net/441e612eff38b68f20eaea4097cad6fa8069ffdd/cif2hkl_1.4.6+ds1-1_arm64 Fri Feb 21 19:23:56 UTC 2025 I: Submitting 8.0K b2/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc https://buildinfo.debian.net/e3788020e99f06567d0e42d2cf0532caa9f3be6d/cif2hkl_1.4.6+ds1-1_arm64 Fri Feb 21 19:23:57 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Feb 21 19:23:57 UTC 2025 I: Done submitting .buildinfo files. Fri Feb 21 19:23:57 UTC 2025 I: Removing signed cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc files: removed './b1/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc' removed './b2/cif2hkl_1.4.6+ds1-1_arm64.buildinfo.asc' 1740165837 arm64 trixie cif2hkl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/cif2hkl_1.4.6+ds1-1.rbuild.log: 72.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/cif2hkl_1.4.6+ds1-1.rbuild.log.gz [2025-02-21 19:23:57] INFO: Starting at 2025-02-21 19:23:57.486683 [2025-02-21 19:23:57] INFO: Generating the pages of 1 package(s) [2025-02-21 19:23:57] INFO: Finished at 2025-02-21 19:23:57.778230, took: 0:00:00.291555 All cleanup done. Fri Feb 21 19:23:57 UTC 2025 - total duration: 0h 7m 23s. Fri Feb 21 19:23:57 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-hedbfsDq, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 27.351s CPU time consumed: 6.529s