Running as unit: rb-build-arm64_20-38634.service ==================================================================================== Thu Sep 26 01:52:49 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_20) on jenkins, called using "codethink02-arm64 codethink04-arm64" as arguments. Thu Sep 26 01:52:49 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-6Ss9C0JS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 26 01:52:49 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Sep 26 01:52:49 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1OW4gz' Thu Sep 26 01:52:50 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 26 01:52:50 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Jcogm4' ok, let's check if fastani is building anywhere yet… ok, fastani is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of fastani in trixie on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Sep 26 01:53:14 UTC 2024 I: starting to build fastani/trixie/arm64 on jenkins on '2024-09-26 01:52' Thu Sep 26 01:53:14 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/38634/console.log 1727315594 arm64 trixie fastani Thu Sep 26 01:53:14 UTC 2024 I: Downloading source for trixie/fastani=1.33-3 --2024-09-26 01:53:14-- http://deb.debian.org/debian/pool/main/f/fastani/fastani_1.33-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1376 (1.3K) [text/prs.lines.tag] Saving to: ‘fastani_1.33-3.dsc’ 0K . 100% 198M=0s 2024-09-26 01:53:14 (198 MB/s) - ‘fastani_1.33-3.dsc’ saved [1376/1376] --2024-09-26 01:53:14-- http://deb.debian.org/debian/pool/main/f/fastani/fastani_1.33-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1376 (1.3K) [text/prs.lines.tag] Saving to: ‘fastani_1.33-3.dsc’ 0K . 100% 198M=0s 2024-09-26 01:53:14 (198 MB/s) - ‘fastani_1.33-3.dsc’ saved [1376/1376] Thu Sep 26 01:53:14 UTC 2024 I: fastani_1.33-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: fastani Binary: fastani Architecture: any Version: 1.33-3 Maintainer: Debian Med Packaging Team Uploaders: Nilesh Patra Homepage: https://github.com/ParBLiSS/FastANI Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/fastani Vcs-Git: https://salsa.debian.org/med-team/fastani.git Testsuite: autopkgtest Testsuite-Triggers: r-cran-genoplotr Build-Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev Package-List: fastani deb science optional arch=any Checksums-Sha1: 76fa45e734f13cf63a7f8374735a1befac402aee 2979201 fastani_1.33.orig.tar.gz 3b1dff759ab704c0f1b3a98b92248147921c33ce 6712 fastani_1.33-3.debian.tar.xz Checksums-Sha256: 0b18b3074094722fb1b2247c1a1c4eb96295fff369b837f422e05072740e0013 2979201 fastani_1.33.orig.tar.gz e0f5033cf50f69d7cdb19f3a676c85908809c9a01c5aabb049828e52365e9d92 6712 fastani_1.33-3.debian.tar.xz Files: f25b5a704b335ad86c089e4be18c1e23 2979201 fastani_1.33.orig.tar.gz 3af6836300f59c797ce0039f7bfa4c17 6712 fastani_1.33-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iHUEARYIAB0WIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZQCYeAAKCRAqJ5BL1yQ+ 2m5HAPsGoVN2yeXQLrJxsHqpxeaAEmLU5rFP3r53+DmIaad2oQD/aRIURYjjCYJq j+bEnwJRj7VPD2dV7x1cffTyQsgsWAM= =8pIx -----END PGP SIGNATURE----- Thu Sep 26 01:53:14 UTC 2024 I: Checking whether the package is not for us Thu Sep 26 01:53:14 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Thu Sep 26 01:53:14 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Thu Sep 26 01:53:14 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Sep 26 01:53:14 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-4pbo7p' ==================================================================================== Thu Sep 26 01:53:16 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 fastani trixie /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK 1.33-3" as arguments. Thu Sep 26 01:53:16 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-12Xp16f5" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 26 01:53:16 UTC 2024 I: Downloading source for trixie/fastani=1.33-3 Reading package lists... NOTICE: 'fastani' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastani.git Please use: git clone https://salsa.debian.org/med-team/fastani.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2987 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fastani 1.33-3 (dsc) [1376 B] Get:2 http://deb.debian.org/debian trixie/main fastani 1.33-3 (tar) [2979 kB] Get:3 http://deb.debian.org/debian trixie/main fastani 1.33-3 (diff) [6712 B] Fetched 2987 kB in 0s (27.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fastani' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastani.git Please use: git clone https://salsa.debian.org/med-team/fastani.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2987 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fastani 1.33-3 (dsc) [1376 B] Get:2 http://deb.debian.org/debian trixie/main fastani 1.33-3 (tar) [2979 kB] Get:3 http://deb.debian.org/debian trixie/main fastani 1.33-3 (diff) [6712 B] Fetched 2987 kB in 0s (27.3 MB/s) Download complete and in download only mode ============================================================================= Building fastani in trixie on arm64 on codethink02-arm64 now. Date: Thu Sep 26 02:53:16 BST 2024 Date UTC: Thu Sep 26 01:53:16 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 25 13:53:17 -12 2024 I: pbuilder-time-stamp: 1727315597 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastani_1.33-3.dsc] I: copying [./fastani_1.33.orig.tar.gz] I: copying [./fastani_1.33-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 12 16:57:28 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found dpkg-source: info: extracting fastani in fastani-1.33 dpkg-source: info: unpacking fastani_1.33.orig.tar.gz dpkg-source: info: unpacking fastani_1.33-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying drop-memcpy-wrapper.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying clean-tmp-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='859916a5cda0487a8b3b31bfe7a5b467' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2251203' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_dnEP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1 --logfile b1/build.log fastani_1.33-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 22.4 MB of archives. After unpacking 90.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-3 [84.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-3 [880 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-3 [1119 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 22.4 MB in 0s (146 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../29-libgslcblas0_2.8+dfsg-3_arm64.deb ... Unpacking libgslcblas0:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl28:arm64. Preparing to unpack .../30-libgsl28_2.8+dfsg-3_arm64.deb ... Unpacking libgsl28:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../31-libgsl-dev_2.8+dfsg-3_arm64.deb ... Unpacking libgsl-dev (2.8+dfsg-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libgslcblas0:arm64 (2.8+dfsg-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libgsl28:arm64 (2.8+dfsg-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-3) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes dpkg-buildpackage: info: source package fastani dpkg-buildpackage: info: source version 1.33-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:59: warning: AC_OUTPUT should be used without arguments. configure.ac:59: You should run autoupdate. dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for g++ option to support OpenMP... -fopenmp checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/fastani-1.33' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fastani-1.33=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -std=c++11 -Isrc -I /usr/local//include -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 src/cgi/core_genome_identity.cpp -o fastANI -L/usr/local//lib -lgsl -lgslcblas -lstdc++ -lz -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastani-1.33' echo "I: Do nothing, defer this to d/install" I: Do nothing, defer this to d/install make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastani' in '../fastani_1.33-3_arm64.deb'. dpkg-deb: building package 'fastani-dbgsym' in '../fastani-dbgsym_1.33-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fastani_1.33-3_arm64.buildinfo dpkg-genchanges --build=binary -O../fastani_1.33-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2251203 and its subdirectories I: Current time: Wed Sep 25 13:54:06 -12 2024 I: pbuilder-time-stamp: 1727315646 Thu Sep 26 01:54:06 UTC 2024 I: Signing ./b1/fastani_1.33-3_arm64.buildinfo as fastani_1.33-3_arm64.buildinfo.asc Thu Sep 26 01:54:06 UTC 2024 I: Signed ./b1/fastani_1.33-3_arm64.buildinfo as ./b1/fastani_1.33-3_arm64.buildinfo.asc Thu Sep 26 01:54:06 UTC 2024 - build #1 for fastani/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Thu Sep 26 01:54:06 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-12Xp16f5, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 26 01:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 26 01:53 b2 -rw-r--r-- 1 jenkins jenkins 1376 Sep 12 2023 fastani_1.33-3.dsc -rw------- 1 jenkins jenkins 2477 Sep 26 01:53 rbuildlog.Xv2y6aI /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1: total 1700 -rw-r--r-- 1 jenkins jenkins 21223 Sep 26 01:54 build.log -rw-r--r-- 1 jenkins jenkins 1578028 Sep 26 01:54 fastani-dbgsym_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 6712 Sep 26 01:54 fastani_1.33-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1376 Sep 26 01:54 fastani_1.33-3.dsc -rw-r--r-- 1 jenkins jenkins 4961 Sep 26 01:54 fastani_1.33-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5843 Sep 26 01:54 fastani_1.33-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1439 Sep 26 01:54 fastani_1.33-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 96600 Sep 26 01:54 fastani_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1279 Sep 26 01:54 fastani_1.33-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2: total 0 Thu Sep 26 01:54:07 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Sep 25 13:53:17 -12 2024 I: pbuilder-time-stamp: 1727315597 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastani_1.33-3.dsc] I: copying [./fastani_1.33.orig.tar.gz] I: copying [./fastani_1.33-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 12 16:57:28 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found dpkg-source: info: extracting fastani in fastani-1.33 dpkg-source: info: unpacking fastani_1.33.orig.tar.gz dpkg-source: info: unpacking fastani_1.33-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying drop-memcpy-wrapper.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying clean-tmp-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='859916a5cda0487a8b3b31bfe7a5b467' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2251203' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_dnEP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1 --logfile b1/build.log fastani_1.33-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 22.4 MB of archives. After unpacking 90.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-3 [84.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-3 [880 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-3 [1119 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 22.4 MB in 0s (146 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../29-libgslcblas0_2.8+dfsg-3_arm64.deb ... Unpacking libgslcblas0:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl28:arm64. Preparing to unpack .../30-libgsl28_2.8+dfsg-3_arm64.deb ... Unpacking libgsl28:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../31-libgsl-dev_2.8+dfsg-3_arm64.deb ... Unpacking libgsl-dev (2.8+dfsg-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libgslcblas0:arm64 (2.8+dfsg-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libgsl28:arm64 (2.8+dfsg-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-3) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes dpkg-buildpackage: info: source package fastani dpkg-buildpackage: info: source version 1.33-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:59: warning: AC_OUTPUT should be used without arguments. configure.ac:59: You should run autoupdate. dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for g++ option to support OpenMP... -fopenmp checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/fastani-1.33' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fastani-1.33=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -std=c++11 -Isrc -I /usr/local//include -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 src/cgi/core_genome_identity.cpp -o fastANI -L/usr/local//lib -lgsl -lgslcblas -lstdc++ -lz -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastani-1.33' echo "I: Do nothing, defer this to d/install" I: Do nothing, defer this to d/install make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastani' in '../fastani_1.33-3_arm64.deb'. dpkg-deb: building package 'fastani-dbgsym' in '../fastani-dbgsym_1.33-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fastani_1.33-3_arm64.buildinfo dpkg-genchanges --build=binary -O../fastani_1.33-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2251203 and its subdirectories I: Current time: Wed Sep 25 13:54:06 -12 2024 I: pbuilder-time-stamp: 1727315646 Thu Sep 26 01:54:08 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Sep 26 01:54:08 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Sep 26 01:54:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Sep 26 01:54:08 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-AvALhO' ==================================================================================== Thu Sep 26 01:54:10 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 fastani trixie /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK 1.33-3" as arguments. Thu Sep 26 01:54:10 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-SgOgvnWP" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Sep 26 01:54:10 UTC 2024 I: Downloading source for trixie/fastani=1.33-3 Reading package lists... NOTICE: 'fastani' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastani.git Please use: git clone https://salsa.debian.org/med-team/fastani.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2987 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fastani 1.33-3 (dsc) [1376 B] Get:2 http://deb.debian.org/debian trixie/main fastani 1.33-3 (tar) [2979 kB] Get:3 http://deb.debian.org/debian trixie/main fastani 1.33-3 (diff) [6712 B] Fetched 2987 kB in 0s (62.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'fastani' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/fastani.git Please use: git clone https://salsa.debian.org/med-team/fastani.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 2987 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main fastani 1.33-3 (dsc) [1376 B] Get:2 http://deb.debian.org/debian trixie/main fastani 1.33-3 (tar) [2979 kB] Get:3 http://deb.debian.org/debian trixie/main fastani 1.33-3 (diff) [6712 B] Fetched 2987 kB in 0s (62.3 MB/s) Download complete and in download only mode ============================================================================= Re-Building fastani in trixie on arm64 on codethink04-arm64 now. Date: Thu Sep 26 02:54:10 BST 2024 Date UTC: Thu Sep 26 01:54:10 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_N2Bn + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' fastani = debian-installer -o fastani = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' fastani = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_N2Bn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2 --logfile b2/build.log fastani_1.33-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 15:54:11 +14 2024 I: pbuilder-time-stamp: 1727315651 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [fastani_1.33-3.dsc] I: copying [./fastani_1.33.orig.tar.gz] I: copying [./fastani_1.33-3.debian.tar.xz] I: Extracting source gpgv: Signature made Tue Sep 12 16:57:28 2023 gpgv: using EDDSA key A095B66EE09024BEE6A2F0722A27904BD7243EDA gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./fastani_1.33-3.dsc: no acceptable signature found dpkg-source: info: extracting fastani in fastani-1.33 dpkg-source: info: unpacking fastani_1.33.orig.tar.gz dpkg-source: info: unpacking fastani_1.33-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying drop-memcpy-wrapper.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying clean-tmp-files.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 26 01:54 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0561a3e229f240429c00b7b39f01c02f LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2693269 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_N2Bn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2 --logfile b2/build.log fastani_1.33-3.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), zlib1g-dev, libgsl-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 33 newly installed, 0 to remove and 0 not upgraded. Need to get 22.4 MB of archives. After unpacking 90.4 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b3 [624 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-3 [84.0 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-3 [880 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-3 [1119 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] Fetched 22.4 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.9.14+dfsg-1.3+b3_arm64.deb ... Unpacking libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libgslcblas0:arm64. Preparing to unpack .../29-libgslcblas0_2.8+dfsg-3_arm64.deb ... Unpacking libgslcblas0:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl28:arm64. Preparing to unpack .../30-libgsl28_2.8+dfsg-3_arm64.deb ... Unpacking libgsl28:arm64 (2.8+dfsg-3) ... Selecting previously unselected package libgsl-dev. Preparing to unpack .../31-libgsl-dev_2.8+dfsg-3_arm64.deb ... Unpacking libgsl-dev (2.8+dfsg-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../32-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libgslcblas0:arm64 (2.8+dfsg-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libgsl28:arm64 (2.8+dfsg-3) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-3) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-2) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes dpkg-buildpackage: info: source package fastani dpkg-buildpackage: info: source version 1.33-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:59: warning: AC_OUTPUT should be used without arguments. configure.ac:59: You should run autoupdate. dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking for g++ option to support OpenMP... -fopenmp checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for zlib.h... yes checking for gsl/gsl_cdf.h... yes configure: creating ./config.status config.status: creating Makefile dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/fastani-1.33' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/fastani-1.33=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -DNDEBUG -std=c++11 -Isrc -I /usr/local//include -fopenmp -Wdate-time -D_FORTIFY_SOURCE=2 src/cgi/core_genome_identity.cpp -o fastANI -L/usr/local//lib -lgsl -lgslcblas -lstdc++ -lz -lm -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/fastani-1.33' echo "I: Do nothing, defer this to d/install" I: Do nothing, defer this to d/install make[1]: Leaving directory '/build/reproducible-path/fastani-1.33' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'fastani' in '../fastani_1.33-3_arm64.deb'. dpkg-deb: building package 'fastani-dbgsym' in '../fastani-dbgsym_1.33-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../fastani_1.33-3_arm64.buildinfo dpkg-genchanges --build=binary -O../fastani_1.33-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2693269 and its subdirectories I: Current time: Thu Sep 26 15:55:34 +14 2024 I: pbuilder-time-stamp: 1727315734 + false + set +x Thu Sep 26 01:55:34 UTC 2024 I: Signing ./b2/fastani_1.33-3_arm64.buildinfo as fastani_1.33-3_arm64.buildinfo.asc Thu Sep 26 01:55:34 UTC 2024 I: Signed ./b2/fastani_1.33-3_arm64.buildinfo as ./b2/fastani_1.33-3_arm64.buildinfo.asc Thu Sep 26 01:55:34 UTC 2024 - build #2 for fastani/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Sep 26 01:55:34 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-SgOgvnWP, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK: total 36 drwxr-xr-x 2 jenkins jenkins 4096 Sep 26 01:54 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 26 01:55 b2 -rw-r--r-- 1 jenkins jenkins 1376 Sep 12 2023 fastani_1.33-3.dsc -rw------- 1 jenkins jenkins 24001 Sep 26 01:54 rbuildlog.Xv2y6aI /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1: total 1708 -rw-r--r-- 1 jenkins jenkins 21223 Sep 26 01:54 build.log -rw-r--r-- 1 jenkins jenkins 1578028 Sep 26 01:54 fastani-dbgsym_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 6712 Sep 26 01:54 fastani_1.33-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1376 Sep 26 01:54 fastani_1.33-3.dsc -rw-r--r-- 1 jenkins jenkins 4961 Sep 26 01:54 fastani_1.33-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5843 Sep 26 01:54 fastani_1.33-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1439 Sep 26 01:54 fastani_1.33-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 96600 Sep 26 01:54 fastani_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1279 Sep 26 01:54 fastani_1.33-3_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2: total 1700 -rw-r--r-- 1 jenkins jenkins 23166 Sep 26 01:55 build.log -rw-r--r-- 1 jenkins jenkins 1578028 Sep 26 01:55 fastani-dbgsym_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 6712 Sep 26 01:55 fastani_1.33-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1376 Sep 26 01:55 fastani_1.33-3.dsc -rw-r--r-- 1 jenkins jenkins 4961 Sep 26 01:55 fastani_1.33-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5843 Sep 26 01:55 fastani_1.33-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1439 Sep 26 01:55 fastani_1.33-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 96600 Sep 26 01:55 fastani_1.33-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1279 Sep 26 01:55 fastani_1.33-3_source.changes Thu Sep 26 01:55:35 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Sep 26 01:55:36 UTC 2024 I: fastani_1.33-3_arm64.changes: Format: 1.8 Date: Tue, 12 Sep 2023 22:24:03 +0530 Source: fastani Binary: fastani fastani-dbgsym Architecture: arm64 Version: 1.33-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: fastani - Fast alignment-free computation of whole-genome Average Nucleotid Closes: 1044381 Changes: fastani (1.33-3) unstable; urgency=medium . * Add patch to fix FTBFS with build after the build (Closes: #1044381) * Bump Standards-Version to 4.6.2 (no changes needed) Checksums-Sha1: a8a3c565c7492aba0ae7f88a0601d405f56de188 1578028 fastani-dbgsym_1.33-3_arm64.deb cc414e14c71f84a150a362eee63b4f7ee1c3f87e 4961 fastani_1.33-3_arm64.buildinfo e5afb42a6936653723078cafd1f3bf1415ba1053 96600 fastani_1.33-3_arm64.deb Checksums-Sha256: 7cc474b27aeb8acda588fc01e089584966975b850629f5dac3ba06a991057dfa 1578028 fastani-dbgsym_1.33-3_arm64.deb 785d3cf98086228368b89e8d403a3e10bbc72a427f1975ae3db9a2ccda07c059 4961 fastani_1.33-3_arm64.buildinfo eea11e388f2617827b61a124817a6346bcd9466e8cab1d1dde2a437e15bba7f8 96600 fastani_1.33-3_arm64.deb Files: b7382d03dd4912542ec719f1a76a2c41 1578028 debug optional fastani-dbgsym_1.33-3_arm64.deb 3f40c1323110674560acc8eba3c70d7e 4961 science optional fastani_1.33-3_arm64.buildinfo fa3a49420225946e8886da7069bfc903 96600 science optional fastani_1.33-3_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/fastani_1.33-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/fastani_1.33-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/fastani_1.33-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/fastani_1.33-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/fastani_1.33-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/fastani_1.33-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-09-26 01:54:07.666883658 +0000 +++ b2/build.log 2024-09-26 01:55:35.207159905 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Sep 25 13:53:17 -12 2024 -I: pbuilder-time-stamp: 1727315597 +I: Current time: Thu Sep 26 15:54:11 +14 2024 +I: pbuilder-time-stamp: 1727315651 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -30,52 +30,84 @@ dpkg-source: info: applying clean-tmp-files.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 26 01:54 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='859916a5cda0487a8b3b31bfe7a5b467' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2251203' - PS1='# ' - PS2='> ' + INVOCATION_ID=0561a3e229f240429c00b7b39f01c02f + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2693269 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_dnEP --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1 --logfile b1/build.log fastani_1.33-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/pbuilderrc_N2Bn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2 --logfile b2/build.log fastani_1.33-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2251203/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -148,7 +180,7 @@ Get: 31 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-3 [880 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-3 [1119 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1 [916 kB] -Fetched 22.4 MB in 0s (146 MB/s) +Fetched 22.4 MB in 0s (140 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19895 files and directories currently installed.) @@ -295,7 +327,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/fastani-1.33/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../fastani_1.33-3_source.changes dpkg-buildpackage: info: source package fastani dpkg-buildpackage: info: source version 1.33-3 dpkg-buildpackage: info: source distribution unstable @@ -380,12 +416,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2693269/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2251203 and its subdirectories -I: Current time: Wed Sep 25 13:54:06 -12 2024 -I: pbuilder-time-stamp: 1727315646 +I: removing directory /srv/workspace/pbuilder/2693269 and its subdirectories +I: Current time: Thu Sep 26 15:55:34 +14 2024 +I: pbuilder-time-stamp: 1727315734 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/fastani_1.33-3.diff: 66.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/fastani_1.33-3.diff.gz b2/build.log: 73.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 73.8% -- replaced with stdout Thu Sep 26 01:55:37 UTC 2024 I: diffoscope 277 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_fastani_trixie_arm64_1727315737 + touch /var/log/reproducible-builds/diffoscope_stamp_fastani_trixie_arm64_1727315737 + RESULT=0 + systemd-run '--description=diffoscope on fastani/1.33-3 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_20-38634 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK --run-session -c jenkins-reproducible-trixie-diffoscope-9a2c4c01-5db3-46f8-bbf6-dae2bd84d230 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/dbd-tmp-7w2UX4f ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1/fastani_1.33-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2/fastani_1.33-3_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_20-38634.service Warning: program compiled against libxml 212 using older 209 # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/fastani_1.33-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b1/fastani_1.33-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DYiyGPQK/b2/fastani_1.33-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.394s) 0.394s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.034s) 0.034s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 721ms CPU time consumed: 721ms __ _ _ / _| __ _ ___| |_ __ _ _ __ (_) | |_ / _` / __| __/ _` | '_ \| | | _| (_| \__ \ || (_| | | | | | |_| \__,_|___/\__\__,_|_| |_|_| Thu Sep 26 01:55:38 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Thu Sep 26 01:55:38 UTC 2024 I: fastani from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-26 01:55:39] INFO: Starting at 2024-09-26 01:55:39.014562 [2024-09-26 01:55:39] INFO: Generating the pages of 1 package(s) [2024-09-26 01:55:39] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/fastani didn't produce a buildlog, even though it has been built. [2024-09-26 01:55:39] INFO: Finished at 2024-09-26 01:55:39.411515, took: 0:00:00.396961 Thu Sep 26 01:55:39 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/fastani.html Thu Sep 26 01:55:39 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Sep 26 01:55:39 UTC 2024 I: Submitting 8.0K b1/fastani_1.33-3_arm64.buildinfo.asc https://buildinfo.debian.net/cc414e14c71f84a150a362eee63b4f7ee1c3f87e/fastani_1.33-3_arm64 Thu Sep 26 01:55:40 UTC 2024 I: Submitting 8.0K b2/fastani_1.33-3_arm64.buildinfo.asc https://buildinfo.debian.net/165854b5d8cbb7ea54452a60f7440e13587be0db/fastani_1.33-3_arm64 Thu Sep 26 01:55:41 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Sep 26 01:55:41 UTC 2024 I: Done submitting .buildinfo files. Thu Sep 26 01:55:41 UTC 2024 I: Removing signed fastani_1.33-3_arm64.buildinfo.asc files: removed './b1/fastani_1.33-3_arm64.buildinfo.asc' removed './b2/fastani_1.33-3_arm64.buildinfo.asc' 1727315741 arm64 trixie fastani Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/fastani_1.33-3.rbuild.log: 71.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/fastani_1.33-3.rbuild.log.gz [2024-09-26 01:55:42] INFO: Starting at 2024-09-26 01:55:42.144991 [2024-09-26 01:55:42] INFO: Generating the pages of 1 package(s) [2024-09-26 01:55:42] INFO: Finished at 2024-09-26 01:55:42.545428, took: 0:00:00.400448 All cleanup done. Thu Sep 26 01:55:42 UTC 2024 - total duration: 0h 2m 49s. Thu Sep 26 01:55:42 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-6Ss9C0JS, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 52.942s CPU time consumed: 8.200s