Running as unit: rb-build-arm64_20-38706.service ==================================================================================== Fri Sep 27 03:28:08 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_20) on jenkins, called using "codethink02-arm64 codethink04-arm64" as arguments. Fri Sep 27 03:28:08 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-OO9OgqAm" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 03:28:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 03:28:08 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-gQfOKD' Fri Sep 27 03:28:09 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Sep 27 03:28:09 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-zbTSEb' ok, let's check if mustang is building anywhere yet… ok, mustang is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of mustang in unstable on arm64 on jenkins now. 1st build will be done on codethink02-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Sep 27 03:28:16 UTC 2024 I: starting to build mustang/unstable/arm64 on jenkins on '2024-09-27 03:28' Fri Sep 27 03:28:16 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_20/38706/console.log 1727407696 arm64 unstable mustang Fri Sep 27 03:28:16 UTC 2024 I: Downloading source for unstable/mustang=3.2.4-1 --2024-09-27 03:28:17-- http://deb.debian.org/debian/pool/main/m/mustang/mustang_3.2.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2030 (2.0K) [text/prs.lines.tag] Saving to: ‘mustang_3.2.4-1.dsc’ 0K . 100% 252M=0s 2024-09-27 03:28:17 (252 MB/s) - ‘mustang_3.2.4-1.dsc’ saved [2030/2030] --2024-09-27 03:28:17-- http://deb.debian.org/debian/pool/main/m/mustang/mustang_3.2.4-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2030 (2.0K) [text/prs.lines.tag] Saving to: ‘mustang_3.2.4-1.dsc’ 0K . 100% 252M=0s 2024-09-27 03:28:17 (252 MB/s) - ‘mustang_3.2.4-1.dsc’ saved [2030/2030] Fri Sep 27 03:28:17 UTC 2024 I: mustang_3.2.4-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mustang Binary: mustang, mustang-testdata Architecture: any all Version: 3.2.4-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://lcb.infotech.monash.edu.au/mustang/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/mustang Vcs-Git: https://salsa.debian.org/med-team/mustang.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: mustang deb science optional arch=any mustang-testdata deb science optional arch=all Checksums-Sha1: d19d24ca76b81161f781a3a468c8cf967747fb1f 147689 mustang_3.2.4.orig.tar.gz c76ce28e5c9cb4a1bf2edb8599d4139c325a6ae7 31064 mustang_3.2.4-1.debian.tar.xz Checksums-Sha256: c05e91c955f491a1fddc404a36ef963b057fd725bcc6d22ef6df1c23b26ce237 147689 mustang_3.2.4.orig.tar.gz 83e05176b677cd150f75602f08b62e0059dbe4bcede2e24d238a2d1c6145f306 31064 mustang_3.2.4-1.debian.tar.xz Files: f1a57f7c4765c7cfc874b7ec96646f1f 147689 mustang_3.2.4.orig.tar.gz c8e3f8ec8a3561acda55a455df98dcf2 31064 mustang_3.2.4-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmOowVoRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGbjg/9H2PrHXU5PuUfBUemJmnkHLti7uW/hqBO IeWdCgRG+XuR+fk6nXI9QAqc6uBZWYWRdwphlwffsmQYynbFhCwHm5np4lVqbE1u YJ5YQw/MeLxhwCis+i1AZOZGPA7jVUwsXRc9+otyc8ekBi3zsy8hnz+a7XA3YUOr nV48MWyjNjbS7gNmi1RNNyeBqejD8dKHtAbOmy9jaZ9mp4WCu4+kNv2xCZRspeu+ GiWuDEWkFJ4c/laGSYXruh34ZyZAV5hCd3tc7VY2m1T/t1EamcDWa3UmPmhJ2cLz 9uOqp2mEXNHp3e5+R25sVDokrQkri1JZXKbrMRi4U9dzizzi0WZYtjpYXlVWYNth 1IQB5NvokC91rEREH5rrw0J497ftibr8Ep3IPkdkN16DfXW/QXjzfyTZHdA5sW51 df3MN2+IIDOg0Wirv/WEgGZ++kn68TG1F1A3yry0ILkgikDJrc8xBcX6mjKfLW9k q+pLqf3KJfZPkUdydLIb2hDBGUZIsWKwZLhSDRdN8WzQEZlO32X7VTgwXzJiMllw /o8oT3z19CpKQ6XFrl1PvkTRlAU7Y85MA1wX76wOMO0m33YSrXXX2ZZzmzsuFK2T HhhoiddDshn1+9DlAO30K3eTW13V+Yg5hLS1TeF/FVqR6WldJMMc3IWw4I2WWV23 f90q/HxFF+Y= =v9bj -----END PGP SIGNATURE----- Fri Sep 27 03:28:17 UTC 2024 I: Checking whether the package is not for us Fri Sep 27 03:28:17 UTC 2024 I: Starting 1st build on remote node codethink02-arm64.debian.net. Fri Sep 27 03:28:17 UTC 2024 I: Preparing to do remote build '1' on codethink02-arm64.debian.net. Fri Sep 27 03:28:17 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Fri Sep 27 03:28:17 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-gHbOFW' ==================================================================================== Fri Sep 27 03:28:18 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "1 mustang unstable /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW 3.2.4-1" as arguments. Fri Sep 27 03:28:18 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-lw8KutvT" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 03:28:18 UTC 2024 I: Downloading source for unstable/mustang=3.2.4-1 Reading package lists... NOTICE: 'mustang' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mustang.git Please use: git clone https://salsa.debian.org/med-team/mustang.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 181 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (dsc) [2030 B] Get:2 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (tar) [148 kB] Get:3 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (diff) [31.1 kB] Fetched 181 kB in 0s (2437 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mustang' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mustang.git Please use: git clone https://salsa.debian.org/med-team/mustang.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 181 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (dsc) [2030 B] Get:2 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (tar) [148 kB] Get:3 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (diff) [31.1 kB] Fetched 181 kB in 0s (2437 kB/s) Download complete and in download only mode ============================================================================= Building mustang in unstable on arm64 on codethink02-arm64 now. Date: Fri Sep 27 04:28:19 BST 2024 Date UTC: Fri Sep 27 03:28:19 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 15:28:19 -12 2024 I: pbuilder-time-stamp: 1727407699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mustang_3.2.4-1.dsc] I: copying [./mustang_3.2.4.orig.tar.gz] I: copying [./mustang_3.2.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 21:32:10 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mustang_3.2.4-1.dsc: no acceptable signature found dpkg-source: info: extracting mustang in mustang-3.2.4 dpkg-source: info: unpacking mustang_3.2.4.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='dc041de626404eb8b2decd805e46eeca' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3226741' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_LTCo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1 --logfile b1/build.log mustang_3.2.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (81.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/globals.cpp -o ./obj/globals.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/distmat.cpp -o ./obj/distmat.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/ew_2.cpp -o ./obj/ew.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/upgma.cpp -o ./obj/upgma.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/main.cpp -o ./obj/main.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o bin/mustang-3.2.4 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' dh_compress -X.pdb make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mustang' in '../mustang_3.2.4-1_arm64.deb'. dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mustang_3.2.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mustang_3.2.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3226741 and its subdirectories I: Current time: Thu Sep 26 15:29:00 -12 2024 I: pbuilder-time-stamp: 1727407740 Fri Sep 27 03:29:00 UTC 2024 I: Signing ./b1/mustang_3.2.4-1_arm64.buildinfo as mustang_3.2.4-1_arm64.buildinfo.asc Fri Sep 27 03:29:00 UTC 2024 I: Signed ./b1/mustang_3.2.4-1_arm64.buildinfo as ./b1/mustang_3.2.4-1_arm64.buildinfo.asc Fri Sep 27 03:29:00 UTC 2024 - build #1 for mustang/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Fri Sep 27 03:29:00 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-lw8KutvT, removing. /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 03:29 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 03:28 b2 -rw-r--r-- 1 jenkins jenkins 2030 Dec 25 2022 mustang_3.2.4-1.dsc -rw------- 1 jenkins jenkins 3140 Sep 27 03:28 rbuildlog.kuVdDXn /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1: total 696 -rw-r--r-- 1 jenkins jenkins 24778 Sep 27 03:29 build.log -rw-r--r-- 1 jenkins jenkins 320780 Sep 27 03:29 mustang-dbgsym_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 45248 Sep 27 03:29 mustang-testdata_3.2.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 31064 Sep 27 03:29 mustang_3.2.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2030 Sep 27 03:29 mustang_3.2.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5128 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6010 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1714 Sep 27 03:29 mustang_3.2.4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 97608 Sep 27 03:29 mustang_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1472 Sep 27 03:29 mustang_3.2.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 147689 Sep 27 03:29 mustang_3.2.4.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2: total 0 Fri Sep 27 03:29:01 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Sep 26 15:28:19 -12 2024 I: pbuilder-time-stamp: 1727407699 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mustang_3.2.4-1.dsc] I: copying [./mustang_3.2.4.orig.tar.gz] I: copying [./mustang_3.2.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 21:32:10 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mustang_3.2.4-1.dsc: no acceptable signature found dpkg-source: info: extracting mustang in mustang-3.2.4 dpkg-source: info: unpacking mustang_3.2.4.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='dc041de626404eb8b2decd805e46eeca' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3226741' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_LTCo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1 --logfile b1/build.log mustang_3.2.4-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (81.9 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/globals.cpp -o ./obj/globals.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/distmat.cpp -o ./obj/distmat.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/ew_2.cpp -o ./obj/ew.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/upgma.cpp -o ./obj/upgma.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/main.cpp -o ./obj/main.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o bin/mustang-3.2.4 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' dh_compress -X.pdb make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mustang' in '../mustang_3.2.4-1_arm64.deb'. dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.4-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../mustang_3.2.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mustang_3.2.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3226741 and its subdirectories I: Current time: Thu Sep 26 15:29:00 -12 2024 I: pbuilder-time-stamp: 1727407740 Fri Sep 27 03:29:02 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Sep 27 03:29:02 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Sep 27 03:29:02 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Sep 27 03:29:02 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-1mNGcU' ==================================================================================== Fri Sep 27 03:29:04 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 mustang unstable /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW 3.2.4-1" as arguments. Fri Sep 27 03:29:04 UTC 2024 - actually running "reproducible_build.sh" (md5sum 79f74068471242981be9b3b00196cbfb) as "/tmp/jenkins-script-JELuXJES" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Sep 27 03:29:04 UTC 2024 I: Downloading source for unstable/mustang=3.2.4-1 Reading package lists... NOTICE: 'mustang' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mustang.git Please use: git clone https://salsa.debian.org/med-team/mustang.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 181 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (dsc) [2030 B] Get:2 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (tar) [148 kB] Get:3 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (diff) [31.1 kB] Fetched 181 kB in 0s (9786 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'mustang' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mustang.git Please use: git clone https://salsa.debian.org/med-team/mustang.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 181 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (dsc) [2030 B] Get:2 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (tar) [148 kB] Get:3 http://deb.debian.org/debian unstable/main mustang 3.2.4-1 (diff) [31.1 kB] Fetched 181 kB in 0s (9786 kB/s) Download complete and in download only mode ============================================================================= Re-Building mustang in unstable on arm64 on codethink04-arm64 now. Date: Fri Sep 27 04:29:04 BST 2024 Date UTC: Fri Sep 27 03:29:04 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_9ltU + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' mustang = debian-installer -o mustang = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' mustang = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_9ltU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2 --logfile b2/build.log mustang_3.2.4-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Sep 27 17:29:04 +14 2024 I: pbuilder-time-stamp: 1727407744 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [mustang_3.2.4-1.dsc] I: copying [./mustang_3.2.4.orig.tar.gz] I: copying [./mustang_3.2.4-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Dec 25 21:32:10 2022 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./mustang_3.2.4-1.dsc: no acceptable signature found dpkg-source: info: extracting mustang in mustang-3.2.4 dpkg-source: info: unpacking mustang_3.2.4.orig.tar.gz dpkg-source: info: unpacking mustang_3.2.4-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 03-test_zf-cchh.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Sep 27 03:29 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=31bcfef3eaa042b68332fa965143b21c LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1110661 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_9ltU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2 --logfile b2/build.log mustang_3.2.4-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-8 [96.6 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.191-2 [188 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5 [9224 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.1 [630 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (138 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3_arm64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b1_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-8_arm64.deb ... Unpacking bsdextrautils (2.40.2-8) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-7_all.deb ... Unpacking libtool (2.4.7-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.191-2_arm64.deb ... Unpacking libelf1t64:arm64 (0.191-2) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5_arm64.deb ... Unpacking libicu72:arm64 (72.1-5) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5) ... Setting up bsdextrautils (2.40.2-8) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3) ... Setting up libelf1t64:arm64 (0.191-2) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.4-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' rm -f obj/*.o rm -f bin/mustang-3.2* make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/globals.cpp -o ./obj/globals.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/CmdLineParser_2.cpp -o ./obj/CmdLineParser.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/distmat.cpp -o ./obj/distmat.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/sse_RK.cpp -o ./obj/sse_RK.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/read_structures.cpp -o ./obj/read_structures.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/primary_lib_gen.cpp -o ./obj/primary_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pairwise_global_structalgn.cpp -o ./obj/pairwise_global_structalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/pdb_ripper_2.cpp -o ./obj/pdb_ripper.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/merge_global_local_libs.cpp -o ./obj/merge_global_local_libs.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/ew_2.cpp -o ./obj/ew.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/refine_pairalgn_2.cpp -o ./obj/refine_pairalgn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_weightedRMS.cpp -o ./obj/superpose_weightedRMS.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_2.cpp -o ./obj/superpose_2.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/jacobi.cpp -o ./obj/jacobi.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/3D_manip_functions.cpp -o ./obj/3D_manip_functions.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/extended_lib_gen_3.cpp -o ./obj/extended_lib_gen.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/progress_align_3.cpp -o ./obj/progress_align.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/neighbour_joining.cpp -o ./obj/neighbour_joining.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/upgma.cpp -o ./obj/upgma.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/superpose_on_core_2.cpp -o ./obj/superpose_on_core.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/multiple_superposition.cpp -o ./obj/multiple_superposition.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/output_algn.cpp -o ./obj/output_algn.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c ./src/main.cpp -o ./obj/main.o g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/mustang-3.2.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o bin/mustang-3.2.4 ./obj/globals.o ./obj/CmdLineParser.o ./obj/distmat.o ./obj/sse_RK.o ./obj/read_structures.o ./obj/primary_lib_gen.o ./obj/pairwise_global_structalgn.o ./obj/pdb_ripper.o ./obj/merge_global_local_libs.o ./obj/ew.o ./obj/refine_pairalgn.o ./obj/superpose_weightedRMS.o ./obj/superpose_2.o ./obj/jacobi.o ./obj/3D_manip_functions.o ./obj/extended_lib_gen.o ./obj/progress_align.o ./obj/neighbour_joining.o ./obj/upgma.o ./obj/superpose_on_core.o ./obj/multiple_superposition.o ./obj/output_algn.o ./obj/main.o make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' install -D -m755 bin/mustang-3.2* debian/mustang/usr/bin/mustang make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism debian/rules override_dh_compress make[1]: Entering directory '/build/reproducible-path/mustang-3.2.4' dh_compress -X.pdb make[1]: Leaving directory '/build/reproducible-path/mustang-3.2.4' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'mustang' in '../mustang_3.2.4-1_arm64.deb'. dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.4-1_arm64.deb'. dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../mustang_3.2.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mustang_3.2.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1110661 and its subdirectories I: Current time: Fri Sep 27 17:29:35 +14 2024 I: pbuilder-time-stamp: 1727407775 + false + set +x Fri Sep 27 03:29:35 UTC 2024 I: Signing ./b2/mustang_3.2.4-1_arm64.buildinfo as mustang_3.2.4-1_arm64.buildinfo.asc Fri Sep 27 03:29:35 UTC 2024 I: Signed ./b2/mustang_3.2.4-1_arm64.buildinfo as ./b2/mustang_3.2.4-1_arm64.buildinfo.asc Fri Sep 27 03:29:35 UTC 2024 - build #2 for mustang/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Sep 27 03:29:35 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-JELuXJES, removing. /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 03:29 b1 drwxr-xr-x 2 jenkins jenkins 4096 Sep 27 03:29 b2 -rw-r--r-- 1 jenkins jenkins 2030 Dec 25 2022 mustang_3.2.4-1.dsc -rw------- 1 jenkins jenkins 28219 Sep 27 03:29 rbuildlog.kuVdDXn /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1: total 708 -rw-r--r-- 1 jenkins jenkins 24778 Sep 27 03:29 build.log -rw-r--r-- 1 jenkins jenkins 320780 Sep 27 03:29 mustang-dbgsym_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 45248 Sep 27 03:29 mustang-testdata_3.2.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 31064 Sep 27 03:29 mustang_3.2.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2030 Sep 27 03:29 mustang_3.2.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5128 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6010 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1714 Sep 27 03:29 mustang_3.2.4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 97608 Sep 27 03:29 mustang_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1472 Sep 27 03:29 mustang_3.2.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 147689 Sep 27 03:29 mustang_3.2.4.orig.tar.gz /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2: total 696 -rw-r--r-- 1 jenkins jenkins 26722 Sep 27 03:29 build.log -rw-r--r-- 1 jenkins jenkins 320780 Sep 27 03:29 mustang-dbgsym_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 45248 Sep 27 03:29 mustang-testdata_3.2.4-1_all.deb -rw-r--r-- 1 jenkins jenkins 31064 Sep 27 03:29 mustang_3.2.4-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2030 Sep 27 03:29 mustang_3.2.4-1.dsc -rw-r--r-- 1 jenkins jenkins 5128 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 6010 Sep 27 03:29 mustang_3.2.4-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1714 Sep 27 03:29 mustang_3.2.4-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 97608 Sep 27 03:29 mustang_3.2.4-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1472 Sep 27 03:29 mustang_3.2.4-1_source.changes -rw-r--r-- 1 jenkins jenkins 147689 Sep 27 03:29 mustang_3.2.4.orig.tar.gz Fri Sep 27 03:29:36 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Sep 27 03:29:37 UTC 2024 I: mustang_3.2.4-1_arm64.changes: Format: 1.8 Date: Sun, 25 Dec 2022 22:30:48 +0100 Source: mustang Binary: mustang mustang-dbgsym mustang-testdata Architecture: arm64 all Version: 3.2.4-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mustang - multiple structural alignment of proteins mustang-testdata - multiple structural alignment of proteins, test data Changes: mustang (3.2.4-1) unstable; urgency=medium . * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 8b18b9e1e687d7a13f8e3f57750bfaef9ebcaa3c 320780 mustang-dbgsym_3.2.4-1_arm64.deb 3639acd832d85c18c7b811301fb1e115bb321038 45248 mustang-testdata_3.2.4-1_all.deb 89bd05dda5cf0a8869ddcc26d5e56b5065bd3788 5128 mustang_3.2.4-1_arm64.buildinfo bcfd17a639d9dd10a9018dd741fcba85b11afb8a 97608 mustang_3.2.4-1_arm64.deb Checksums-Sha256: e86ff95253a52dd893447bfd90182f15d2f7af204bf4fcd2c87e1076735149be 320780 mustang-dbgsym_3.2.4-1_arm64.deb 3e8db35c4b39313041017d1604915e24e6f42186a40603feb2951aa2742d22f6 45248 mustang-testdata_3.2.4-1_all.deb a35efad7327780239000e494f107d242b1593a9df440d05986290ca3d00d7e13 5128 mustang_3.2.4-1_arm64.buildinfo 3adbe1bbd2fa5957ee87e1b74ff4d9762e9f4aaea218e33c011cc2d71f4f4400 97608 mustang_3.2.4-1_arm64.deb Files: b0505080ef32e940b51b33b5e778d142 320780 debug optional mustang-dbgsym_3.2.4-1_arm64.deb 56e89426184a0200df148b3c2575a922 45248 science optional mustang-testdata_3.2.4-1_all.deb d964ef583f6f5dcd0bb7e146fc44ae57 5128 science optional mustang_3.2.4-1_arm64.buildinfo 3dbd6127f87afe987f6a5ad1706505ad 97608 science optional mustang_3.2.4-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mustang_3.2.4-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mustang_3.2.4-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mustang_3.2.4-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/mustang_3.2.4-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/mustang_3.2.4-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mustang_3.2.4-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-09-27 03:29:01.435946863 +0000 +++ b2/build.log 2024-09-27 03:29:36.446457038 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Sep 26 15:28:19 -12 2024 -I: pbuilder-time-stamp: 1727407699 +I: Current time: Fri Sep 27 17:29:04 +14 2024 +I: pbuilder-time-stamp: 1727407744 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying cross.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Sep 27 03:29 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='dc041de626404eb8b2decd805e46eeca' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3226741' - PS1='# ' - PS2='> ' + INVOCATION_ID=31bcfef3eaa042b68332fa965143b21c + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1110661 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_LTCo --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1 --logfile b1/build.log mustang_3.2.4-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/pbuilderrc_9ltU --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2 --logfile b2/build.log mustang_3.2.4-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink02-arm64 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-25-cloud-arm64 #1 SMP Debian 6.1.106-3 (2024-08-26) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3226741/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -141,7 +173,7 @@ Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] -Fetched 19.4 MB in 0s (81.9 MB/s) +Fetched 19.4 MB in 0s (138 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19897 files and directories currently installed.) @@ -272,7 +304,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/mustang-3.2.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../mustang_3.2.4-1_source.changes dpkg-buildpackage: info: source package mustang dpkg-buildpackage: info: source version 3.2.4-1 dpkg-buildpackage: info: source distribution unstable @@ -354,8 +390,8 @@ dh_md5sums dh_builddeb dpkg-deb: building package 'mustang' in '../mustang_3.2.4-1_arm64.deb'. -dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-deb: building package 'mustang-dbgsym' in '../mustang-dbgsym_3.2.4-1_arm64.deb'. +dpkg-deb: building package 'mustang-testdata' in '../mustang-testdata_3.2.4-1_all.deb'. dpkg-genbuildinfo --build=binary -O../mustang_3.2.4-1_arm64.buildinfo dpkg-genchanges --build=binary -O../mustang_3.2.4-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -363,12 +399,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1110661/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3226741 and its subdirectories -I: Current time: Thu Sep 26 15:29:00 -12 2024 -I: pbuilder-time-stamp: 1727407740 +I: removing directory /srv/workspace/pbuilder/1110661 and its subdirectories +I: Current time: Fri Sep 27 17:29:35 +14 2024 +I: pbuilder-time-stamp: 1727407775 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mustang_3.2.4-1.diff: 67.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/mustang_3.2.4-1.diff.gz b2/build.log: 77.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 78.6% -- replaced with stdout Fri Sep 27 03:29:38 UTC 2024 I: diffoscope 277 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_mustang_unstable_arm64_1727407778 + touch /var/log/reproducible-builds/diffoscope_stamp_mustang_unstable_arm64_1727407778 + RESULT=0 + systemd-run '--description=diffoscope on mustang/3.2.4-1 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_20-38706 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW --run-session -c jenkins-reproducible-unstable-diffoscope-9a0de3c7-ea05-46e0-8ca8-4cc3316aa64b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/dbd-tmp-Skl5j8B ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1/mustang_3.2.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2/mustang_3.2.4-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_20-38706.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/mustang_3.2.4-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b1/mustang_3.2.4-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.quNXLDLW/b2/mustang_3.2.4-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.387s) 0.387s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.022s) 0.022s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 717ms CPU time consumed: 714ms _ _ __ ___ _ _ ___| |_ __ _ _ __ __ _ | '_ ` _ \| | | / __| __/ _` | '_ \ / _` | | | | | | | |_| \__ \ || (_| | | | | (_| | |_| |_| |_|\__,_|___/\__\__,_|_| |_|\__, | |___/ Fri Sep 27 03:29:39 UTC 2024 I: diffoscope 277 found no differences in the changes files, and a .buildinfo file also exists. Fri Sep 27 03:29:39 UTC 2024 I: mustang from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-09-27 03:29:40] INFO: Starting at 2024-09-27 03:29:40.174036 [2024-09-27 03:29:40] INFO: Generating the pages of 1 package(s) [2024-09-27 03:29:40] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/mustang didn't produce a buildlog, even though it has been built. [2024-09-27 03:29:40] INFO: Finished at 2024-09-27 03:29:40.704682, took: 0:00:00.530655 Fri Sep 27 03:29:40 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/mustang.html Fri Sep 27 03:29:40 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Sep 27 03:29:40 UTC 2024 I: Submitting 8.0K b1/mustang_3.2.4-1_arm64.buildinfo.asc https://buildinfo.debian.net/89bd05dda5cf0a8869ddcc26d5e56b5065bd3788/mustang_3.2.4-1_all Fri Sep 27 03:29:41 UTC 2024 I: Submitting 8.0K b2/mustang_3.2.4-1_arm64.buildinfo.asc https://buildinfo.debian.net/cc6c64242befe7a8ff55a2913840c0ad16d3e142/mustang_3.2.4-1_all Fri Sep 27 03:29:42 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Sep 27 03:29:42 UTC 2024 I: Done submitting .buildinfo files. Fri Sep 27 03:29:42 UTC 2024 I: Removing signed mustang_3.2.4-1_arm64.buildinfo.asc files: removed './b1/mustang_3.2.4-1_arm64.buildinfo.asc' removed './b2/mustang_3.2.4-1_arm64.buildinfo.asc' 1727407782 arm64 unstable mustang Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mustang_3.2.4-1.rbuild.log: 74.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/mustang_3.2.4-1.rbuild.log.gz [2024-09-27 03:29:42] INFO: Starting at 2024-09-27 03:29:42.755944 [2024-09-27 03:29:42] INFO: Generating the pages of 1 package(s) [2024-09-27 03:29:43] INFO: Finished at 2024-09-27 03:29:43.249328, took: 0:00:00.493392 All cleanup done. Fri Sep 27 03:29:43 UTC 2024 - total duration: 0h 1m 31s. Fri Sep 27 03:29:43 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-OO9OgqAm, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 34.508s CPU time consumed: 8.162s