Running as unit: rb-build-arm64_21-40562.service ==================================================================================== Mon Nov 25 11:04:46 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_21) on jenkins, called using "codethink03-arm64 codethink02-arm64" as arguments. Mon Nov 25 11:04:46 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Pd9TxjCY" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 11:04:46 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Nov 25 11:04:46 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Exf6Fo' Mon Nov 25 11:04:47 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Mon Nov 25 11:04:47 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-UcJvMv' ok, let's check if python-sqt is building anywhere yet… ok, python-sqt is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-sqt in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink02-arm64.debian.net. ============================================================================= Mon Nov 25 11:05:08 UTC 2024 I: starting to build python-sqt/trixie/arm64 on jenkins on '2024-11-25 11:04' Mon Nov 25 11:05:08 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/40562/console.log 1732532708 arm64 trixie python-sqt Mon Nov 25 11:05:08 UTC 2024 I: Downloading source for trixie/python-sqt=0.8.0-8 --2024-11-25 11:05:08-- http://deb.debian.org/debian/pool/main/p/python-sqt/python-sqt_0.8.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2200 (2.1K) [text/prs.lines.tag] Saving to: ‘python-sqt_0.8.0-8.dsc’ 0K .. 100% 185M=0s 2024-11-25 11:05:08 (185 MB/s) - ‘python-sqt_0.8.0-8.dsc’ saved [2200/2200] --2024-11-25 11:05:08-- http://deb.debian.org/debian/pool/main/p/python-sqt/python-sqt_0.8.0-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2200 (2.1K) [text/prs.lines.tag] Saving to: ‘python-sqt_0.8.0-8.dsc’ 0K .. 100% 185M=0s 2024-11-25 11:05:08 (185 MB/s) - ‘python-sqt_0.8.0-8.dsc’ saved [2200/2200] Mon Nov 25 11:05:08 UTC 2024 I: python-sqt_0.8.0-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-sqt Binary: python3-sqt Architecture: any Version: 0.8.0-8 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://bitbucket.org/marcelm/sqt Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/python-sqt Vcs-Git: https://salsa.debian.org/med-team/python-sqt.git Testsuite: autopkgtest-pkg-pybuild Build-Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt , python3-pysam , python3-pytest , python3-seaborn , python3-xopen Package-List: python3-sqt deb python optional arch=any Checksums-Sha1: 6b7dee79483ed5ff1168329817a4999da6007033 116482 python-sqt_0.8.0.orig.tar.gz 05f456d5047bc1c4c62de6e58037df9cd209b1de 6984 python-sqt_0.8.0-8.debian.tar.xz Checksums-Sha256: 86a938fcf41d64a175c234b2156b674d5f4d615fa869341d985c0e05480e5f22 116482 python-sqt_0.8.0.orig.tar.gz 1f7426e8a6836dbcc4d98ec653707778b07ea7a8e1ccb6417ca245bafcb0241d 6984 python-sqt_0.8.0-8.debian.tar.xz Files: ae2f5949c3841194ad87c4fb6036a8db 116482 python-sqt_0.8.0.orig.tar.gz 96982dea78fdd92da470b6e3a887dd71 6984 python-sqt_0.8.0-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmVwfKwRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLLhAAmDIvcsXXsBuklZL13bJUZQonjimgUvYU hDSROANtkOqGMK2h/ndD1pnyAnufHLE9x4fmPkAyQKCXeSpbDzLkcJbQQWqs8UNx Dvlo82XP/QT+lQ91nre8IPw5Kcw02d3ZEEM/LMWlO2blOYCOm3cvDJLW0X/CPpAg 9KSPjy7bnrB5k9uqMU5BVunaooSZQl8gfNwTnNa0AC01ypC7Z3el96obZuND2bjm unNTb0CMc2B19jpnI7l4iUbC9K0HndYaHJC9QY6jK7z7q80WRD0INaOamyZUm4NR c9V1Z7XQb2jPPfs/QRo3s23unLS4mmh3nl2FjOIaQmh6+EpNZ7zgcb1ZFcCriQrz V9WFwyTucB4ey0Hx4R3I0qiIQ1Q7yOaRNYruAupZy6vvhJ1hUpNT4DqZa0jIBvua kjr4CG3sgqC7KQxqOODJm/no5x2YR+arlYLBVbIFjkyKxCi528iKJDSJeqw+X09L f14YUhTwKlfAxQBxc78YVPFnMH6H1UbNialIB3OgYtQGYU/ppEZBVW21RXbYJZgT Z8A7UIZX7JyxGM2e7q1FWac/3Jqrk3DqqSHJPcYBswhVOhbH9DLf8J6932qc+dxv ze0IJ4xLY8KnRJwQL8o+rx4j9sV+AhIdWwREaKjm9g/Y2hAKVqnlTZ/ifYF62+hZ I/X5sc2IgBY= =p736 -----END PGP SIGNATURE----- Mon Nov 25 11:05:08 UTC 2024 I: Checking whether the package is not for us Mon Nov 25 11:05:08 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Nov 25 11:05:08 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Nov 25 11:05:08 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Nov 25 11:05:08 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-KCRopz' ==================================================================================== Sun Dec 28 17:28:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 python-sqt trixie /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3 0.8.0-8" as arguments. Sun Dec 28 17:28:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-3g4fOw6D" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Dec 28 17:28:10 UTC 2025 I: Downloading source for trixie/python-sqt=0.8.0-8 Reading package lists... NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-sqt.git Please use: git clone https://salsa.debian.org/med-team/python-sqt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (dsc) [2200 B] Get:2 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (tar) [116 kB] Get:3 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (diff) [6984 B] Fetched 126 kB in 0s (5505 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-sqt.git Please use: git clone https://salsa.debian.org/med-team/python-sqt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (dsc) [2200 B] Get:2 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (tar) [116 kB] Get:3 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (diff) [6984 B] Fetched 126 kB in 0s (5505 kB/s) Download complete and in download only mode ============================================================================= Building python-sqt in trixie on arm64 on codethink03-arm64 now. Date: Sun Dec 28 17:28:10 GMT 2025 Date UTC: Sun Dec 28 17:28:10 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 05:28:10 -12 2025 I: pbuilder-time-stamp: 1766942890 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-sqt_0.8.0-8.dsc] I: copying [./python-sqt_0.8.0.orig.tar.gz] I: copying [./python-sqt_0.8.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 6 13:52:44 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8.dsc: no acceptable signature found dpkg-source: info: extracting python-sqt in python-sqt-0.8.0 dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-sqt_0.8.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixme_ignore_failing_test.patch dpkg-source: info: applying fixme_ignore_failing_test2.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='43b8494fdce84b0a807889d72ec7ebfc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2245912' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_rouR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1 --logfile b1/build.log python-sqt_0.8.0-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-cutadapt; however: Package python3-cutadapt is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dnaio{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After unpacking 591 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 125 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.0-2+b1 [237 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3-xopen all 1.7.0-2 [16.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dnaio arm64 1.2.2-1+b1 [86.6 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-cutadapt arm64 4.7-2+b3 [215 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b6 [25.8 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.13.1-6 [18.2 MB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [32.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.0-3 [1500 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1+b1 [498 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.7-3 [111 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.0-2 [101 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.12.7-1 [9444 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 10.4.0-1+b1 [79.9 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-seaborn all 0.13.2-4 [215 kB] Fetched 117 MB in 0s (238 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20417 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... 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Setting up libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 28 17:28:36 UTC 2025. Universal Time is now: Sun Dec 28 17:28:36 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up pigz (2.8-1+b1) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:arm64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-2) ... Setting up libraqm0:arm64 (0.10.1-1+b2) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:arm64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pysam (0.22.1+ds-2+b3) ... Setting up libpython3-dev:arm64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b6) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Setting up libpython3-all-dev:arm64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up python3-dnaio (1.2.2-1+b1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-6) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-cutadapt (4.7-2+b3) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-seaborn (0.13.2-4) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes dpkg-buildpackage: info: source package python-sqt dpkg-buildpackage: info: source version 0.8.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-sqt.substvars debian/files rm -fr -- debian/python3-sqt/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-sqt-0.8.0/sqt/_helpers.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling sqt/_helpers.pyx because it changed. [1/1] Cythonizing sqt/_helpers.pyx building 'sqt._helpers' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/sqt aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c sqt/_helpers.c -o build/temp.linux-aarch64-cpython-312/sqt/_helpers.o sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’: sqt/_helpers.c:22538:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22538 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]); | ~~~~~~~~~~^~~~~~~~~~~~ sqt/_helpers.c:22547:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22547 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sqt/_helpers.c:22556:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22556 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/sqt/_helpers.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-sqt-0.8.0' LC_ALL=C.UTF-8 dh_auto_test pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build configfile: pytest.ini plugins: typeguard-4.4.1 collected 45 items tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py ...... [ 57%] tests/testfasta.py ............. [ 86%] tests/testindexedfasta.py ... [ 93%] tests/testintervaltree.py . [ 95%] tests/testmedian.py . [ 97%] tests/testregion.py . [100%] ============================== 45 passed in 5.81s ============================== rm -fr -- /tmp/dh-xdg-rundir-CCiRIHaf make[1]: Leaving directory '/build/reproducible-path/python-sqt-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-sqt.substvars rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/ dh_auto_install --destdir=debian/python3-sqt/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt pybuild --install -i python{version} -p 3.12 --dest-dir /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running install_lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12 creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/README.md -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/region.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/math.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/intervaltree.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/dna.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/colorspace.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/align.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/cigar.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_codons.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/compat.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/args.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/gtf.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bameof.py to bameof.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/chars.py to chars.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/histogram.py to histogram.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/mutate.py to mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readcov.py to readcov.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/simreads.py to simreads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/translate.py to translate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/bam.py to bam.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/gtf.py to gtf.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/sff.py to sff.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_codons.py to _codons.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/ansicolor.py to ansicolor.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/args.py to args.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/cigar.py to cigar.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/colorspace.py to colorspace.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/compat.py to compat.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/dna.py to dna.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/intervaltree.py to intervaltree.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/math.py to math.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/qualtrim.py to qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/reads.py to reads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/region.py to region.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/utils.py to utils.cpython-312.pyc running install_egg_info running egg_info creating sqt.egg-info writing sqt.egg-info/PKG-INFO writing dependency_links to sqt.egg-info/dependency_links.txt writing entry points to sqt.egg-info/entry_points.txt writing requirements to sqt.egg-info/requires.txt writing top-level names to sqt.egg-info/top_level.txt writing manifest file 'sqt.egg-info/SOURCES.txt' reading manifest file 'sqt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'sqt.egg-info/SOURCES.txt' Copying sqt.egg-info to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing sqt script to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/bin dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/man/man1/ install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:174: source=python-sqt, binary packages=['python3-sqt'] D: dh_python3 dh_python3:205: processing package python3-sqt... D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.12/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-sqt D: dh_python3 pydist:175: trying to find dependency for cutadapt (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pysam!=0.9.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for xopen (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-xopen', 'python3-matplotlib', 'python3-cutadapt', 'python3-pysam', 'python3:any', 'python3-seaborn', 'python3 (>= 3.12~)', 'python3 (<< 3.13)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-sqt chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 cd '/build/reproducible-path/python-sqt-0.8.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym install -m0755 -d debian/.debhelper/python3-sqt dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-sqt/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst chmod 0755 -- debian/python3-sqt/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm chmod 0755 -- debian/python3-sqt/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN echo misc:Depends= >> debian/python3-sqt.substvars echo misc:Pre-Depends= >> debian/python3-sqt.substvars install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=409a6ebd45d451b1252a7189a0333f0a1fad36cd -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/python3-sqt chmod 0644 -- debian/python3-sqt/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-sqt .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root .. dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_arm64.deb'. dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../python-sqt_0.8.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2245912 and its subdirectories I: Current time: Sun Dec 28 05:29:40 -12 2025 I: pbuilder-time-stamp: 1766942980 Sun Dec 28 17:29:40 UTC 2025 I: Signing ./b1/python-sqt_0.8.0-8_arm64.buildinfo as python-sqt_0.8.0-8_arm64.buildinfo.asc Sun Dec 28 17:29:40 UTC 2025 I: Signed ./b1/python-sqt_0.8.0-8_arm64.buildinfo as ./b1/python-sqt_0.8.0-8_arm64.buildinfo.asc Sun Dec 28 17:29:40 UTC 2025 - build #1 for python-sqt/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun Dec 28 17:29:40 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-3g4fOw6D, removing. /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 11:06 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 11:05 b2 -rw-r--r-- 1 jenkins jenkins 2200 Dec 6 2023 python-sqt_0.8.0-8.dsc -rw------- 1 jenkins jenkins 3327 Nov 25 11:05 rbuildlog.FNWWOVg /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1: total 688 -rw-r--r-- 1 jenkins jenkins 119411 Nov 25 11:06 build.log -rw-r--r-- 1 jenkins jenkins 6984 Nov 25 11:06 python-sqt_0.8.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2200 Nov 25 11:06 python-sqt_0.8.0-8.dsc -rw-r--r-- 1 jenkins jenkins 9849 Nov 25 11:06 python-sqt_0.8.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10731 Nov 25 11:06 python-sqt_0.8.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1730 Nov 25 11:06 python-sqt_0.8.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1561 Nov 25 11:06 python-sqt_0.8.0-8_source.changes -rw-r--r-- 1 jenkins jenkins 405800 Nov 25 11:06 python3-sqt-dbgsym_0.8.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 122920 Nov 25 11:06 python3-sqt_0.8.0-8_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2: total 0 Mon Nov 25 11:06:42 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Dec 28 05:28:10 -12 2025 I: pbuilder-time-stamp: 1766942890 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-sqt_0.8.0-8.dsc] I: copying [./python-sqt_0.8.0.orig.tar.gz] I: copying [./python-sqt_0.8.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 6 13:52:44 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8.dsc: no acceptable signature found dpkg-source: info: extracting python-sqt in python-sqt-0.8.0 dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-sqt_0.8.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixme_ignore_failing_test.patch dpkg-source: info: applying fixme_ignore_failing_test2.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='43b8494fdce84b0a807889d72ec7ebfc' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2245912' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_rouR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1 --logfile b1/build.log python-sqt_0.8.0-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-cutadapt; however: Package python3-cutadapt is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dnaio{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After unpacking 591 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 125 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.0-2+b1 [237 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3-xopen all 1.7.0-2 [16.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dnaio arm64 1.2.2-1+b1 [86.6 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-cutadapt arm64 4.7-2+b3 [215 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b6 [25.8 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.13.1-6 [18.2 MB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [32.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.0-3 [1500 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1+b1 [498 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.7-3 [111 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.0-2 [101 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.12.7-1 [9444 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 10.4.0-1+b1 [79.9 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-seaborn all 0.13.2-4 [215 kB] Fetched 117 MB in 0s (238 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20417 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21479 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.22.5-2_all.deb ... 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Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Dec 28 17:28:36 UTC 2025. Universal Time is now: Sun Dec 28 17:28:36 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-2) ... Setting up libraqm0:arm64 (0.10.1-1+b2) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:arm64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pysam (0.22.1+ds-2+b3) ... Setting up libpython3-dev:arm64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b6) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Setting up libpython3-all-dev:arm64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up python3-dnaio (1.2.2-1+b1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-6) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-cutadapt (4.7-2+b3) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-seaborn (0.13.2-4) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes dpkg-buildpackage: info: source package python-sqt dpkg-buildpackage: info: source version 0.8.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-sqt.substvars debian/files rm -fr -- debian/python3-sqt/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-sqt-0.8.0/sqt/_helpers.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling sqt/_helpers.pyx because it changed. [1/1] Cythonizing sqt/_helpers.pyx building 'sqt._helpers' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/sqt aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c sqt/_helpers.c -o build/temp.linux-aarch64-cpython-312/sqt/_helpers.o sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’: sqt/_helpers.c:22538:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22538 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]); | ~~~~~~~~~~^~~~~~~~~~~~ sqt/_helpers.c:22547:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22547 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sqt/_helpers.c:22556:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22556 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/sqt/_helpers.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-sqt-0.8.0' LC_ALL=C.UTF-8 dh_auto_test pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build configfile: pytest.ini plugins: typeguard-4.4.1 collected 45 items tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py ...... [ 57%] tests/testfasta.py ............. [ 86%] tests/testindexedfasta.py ... [ 93%] tests/testintervaltree.py . [ 95%] tests/testmedian.py . [ 97%] tests/testregion.py . [100%] ============================== 45 passed in 5.81s ============================== rm -fr -- /tmp/dh-xdg-rundir-CCiRIHaf make[1]: Leaving directory '/build/reproducible-path/python-sqt-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-sqt.substvars rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/ dh_auto_install --destdir=debian/python3-sqt/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt pybuild --install -i python{version} -p 3.12 --dest-dir /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running install_lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12 creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/README.md -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/region.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/math.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/intervaltree.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/dna.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/colorspace.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/align.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/cigar.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_codons.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/compat.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/args.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/gtf.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bameof.py to bameof.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/chars.py to chars.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/histogram.py to histogram.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/mutate.py to mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readcov.py to readcov.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/simreads.py to simreads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/translate.py to translate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/bam.py to bam.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/gtf.py to gtf.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/sff.py to sff.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_codons.py to _codons.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/ansicolor.py to ansicolor.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/args.py to args.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/cigar.py to cigar.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/colorspace.py to colorspace.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/compat.py to compat.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/dna.py to dna.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/intervaltree.py to intervaltree.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/math.py to math.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/qualtrim.py to qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/reads.py to reads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/region.py to region.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/utils.py to utils.cpython-312.pyc running install_egg_info running egg_info creating sqt.egg-info writing sqt.egg-info/PKG-INFO writing dependency_links to sqt.egg-info/dependency_links.txt writing entry points to sqt.egg-info/entry_points.txt writing requirements to sqt.egg-info/requires.txt writing top-level names to sqt.egg-info/top_level.txt writing manifest file 'sqt.egg-info/SOURCES.txt' reading manifest file 'sqt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'sqt.egg-info/SOURCES.txt' Copying sqt.egg-info to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing sqt script to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/bin dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/man/man1/ install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:174: source=python-sqt, binary packages=['python3-sqt'] D: dh_python3 dh_python3:205: processing package python3-sqt... D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.12/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-sqt D: dh_python3 pydist:175: trying to find dependency for cutadapt (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pysam!=0.9.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for xopen (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-xopen', 'python3-matplotlib', 'python3-cutadapt', 'python3-pysam', 'python3:any', 'python3-seaborn', 'python3 (>= 3.12~)', 'python3 (<< 3.13)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-sqt chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 cd '/build/reproducible-path/python-sqt-0.8.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym install -m0755 -d debian/.debhelper/python3-sqt dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-sqt/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst chmod 0755 -- debian/python3-sqt/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm chmod 0755 -- debian/python3-sqt/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN echo misc:Depends= >> debian/python3-sqt.substvars echo misc:Pre-Depends= >> debian/python3-sqt.substvars install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=409a6ebd45d451b1252a7189a0333f0a1fad36cd -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/python3-sqt chmod 0644 -- debian/python3-sqt/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-sqt .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root .. dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_arm64.deb'. dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../python-sqt_0.8.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2245912 and its subdirectories I: Current time: Sun Dec 28 05:29:40 -12 2025 I: pbuilder-time-stamp: 1766942980 Mon Nov 25 11:06:42 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Mon Nov 25 11:06:42 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Mon Nov 25 11:06:42 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Mon Nov 25 11:06:42 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-EBULo7' ==================================================================================== Mon Nov 25 11:06:44 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "2 python-sqt trixie /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3 0.8.0-8" as arguments. Mon Nov 25 11:06:44 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-aa7zkkXL" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Nov 25 11:06:44 UTC 2024 I: Downloading source for trixie/python-sqt=0.8.0-8 Reading package lists... NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-sqt.git Please use: git clone https://salsa.debian.org/med-team/python-sqt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (dsc) [2200 B] Get:2 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (tar) [116 kB] Get:3 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (diff) [6984 B] Fetched 126 kB in 0s (7332 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-sqt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-sqt.git Please use: git clone https://salsa.debian.org/med-team/python-sqt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 126 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (dsc) [2200 B] Get:2 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (tar) [116 kB] Get:3 http://deb.debian.org/debian trixie/main python-sqt 0.8.0-8 (diff) [6984 B] Fetched 126 kB in 0s (7332 kB/s) Download complete and in download only mode ============================================================================= Re-Building python-sqt in trixie on arm64 on codethink02-arm64 now. Date: Mon Nov 25 11:06:44 GMT 2024 Date UTC: Mon Nov 25 11:06:44 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_0OEr + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-sqt = debian-installer -o python-sqt = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-sqt = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_0OEr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2 --logfile b2/build.log python-sqt_0.8.0-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 26 01:06:44 +14 2024 I: pbuilder-time-stamp: 1732532804 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-sqt_0.8.0-8.dsc] I: copying [./python-sqt_0.8.0.orig.tar.gz] I: copying [./python-sqt_0.8.0-8.debian.tar.xz] I: Extracting source gpgv: Signature made Wed Dec 6 13:52:44 2023 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./python-sqt_0.8.0-8.dsc: no acceptable signature found dpkg-source: info: extracting python-sqt in python-sqt-0.8.0 dpkg-source: info: unpacking python-sqt_0.8.0.orig.tar.gz dpkg-source: info: unpacking python-sqt_0.8.0-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fixme_ignore_failing_test.patch dpkg-source: info: applying fixme_ignore_failing_test2.patch dpkg-source: info: applying pytest.patch dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 25 11:06 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=60b66a5b08d746288f724985b212e03e LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1526898 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_0OEr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2 --logfile b2/build.log python-sqt_0.8.0-8.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-sequence-python3, python3-all-dev, python3-setuptools, cython3, python3-cutadapt, python3-pysam, python3-pytest, python3-seaborn, python3-xopen dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-sequence-python3; however: Package dh-sequence-python3 is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on python3-cutadapt; however: Package python3-cutadapt is not installed. pbuilder-satisfydepends-dummy depends on python3-pysam; however: Package python3-pysam is not installed. pbuilder-satisfydepends-dummy depends on python3-pytest; however: Package python3-pytest is not installed. pbuilder-satisfydepends-dummy depends on python3-seaborn; however: Package python3-seaborn is not installed. pbuilder-satisfydepends-dummy depends on python3-xopen; however: Package python3-xopen is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} blt{a} bsdextrautils{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-lyx{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libbrotli1{a} libcom-err2{a} libcurl3t64-gnutls{a} libdebhelper-perl{a} libdeflate0{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran5{a} libglib2.0-0t64{a} libgraphite2-3{a} libgssapi-krb5-2{a} libharfbuzz0b{a} libhts3t64{a} libhtscodecs2{a} libicu72{a} libimagequant0{a} libjbig0{a} libjpeg62-turbo{a} libjs-jquery{a} libjs-jquery-ui{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} liblbfgsb0{a} liblcms2-2{a} libldap-2.5-0{a} liblerc4{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnsl2{a} libopenjp2-7{a} libpipeline1{a} libpng16-16t64{a} libpsl5t64{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libqhull-r8.0{a} libraqm0{a} libreadline8t64{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libssh2-1t64{a} libtcl8.6{a} libtiff6{a} libtirpc-common{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libuchardet0{a} libwebp7{a} libwebpdemux2{a} libwebpmux3{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxrender1{a} libxslt1.1{a} libxss1{a} m4{a} man-db{a} media-types{a} netbase{a} pigz{a} po-debconf{a} python-matplotlib-data{a} python3{a} python3-all{a} python3-all-dev{a} python3-appdirs{a} python3-attr{a} python3-autocommand{a} python3-brotli{a} python3-contourpy{a} python3-cutadapt{a} python3-cycler{a} python3-dateutil{a} python3-decorator{a} python3-dev{a} python3-dnaio{a} python3-fonttools{a} python3-fs{a} python3-inflect{a} python3-iniconfig{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-kiwisolver{a} python3-lxml{a} python3-lz4{a} python3-matplotlib{a} python3-minimal{a} python3-more-itertools{a} python3-mpmath{a} python3-numpy{a} python3-packaging{a} python3-pandas{a} python3-pandas-lib{a} python3-pil{a} python3-pil.imagetk{a} python3-pkg-resources{a} python3-pluggy{a} python3-pyparsing{a} python3-pysam{a} python3-pytest{a} python3-scipy{a} python3-seaborn{a} python3-setuptools{a} python3-six{a} python3-sympy{a} python3-tk{a} python3-typeguard{a} python3-typing-extensions{a} python3-tz{a} python3-ufolib2{a} python3-xopen{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.12-tk{a} python3.13-tk{a} readline-common{a} sensible-utils{a} tk8.6-blt2.5{a} tzdata{a} unicode-data{a} x11-common{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl isympy-common javascript-common krb5-locales libarchive-cpio-perl libglib2.0-data libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules lynx publicsuffix python3-bottleneck python3-bs4 python3-cssselect python3-html5lib python3-jinja2 python3-numexpr python3-odf python3-olefile python3-openpyxl python3-pygments python3-tables shared-mime-info wget xdg-user-dirs 0 packages upgraded, 175 newly installed, 0 to remove and 0 not upgraded. Need to get 117 MB of archives. After unpacking 591 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 pigz arm64 2.8-1+b1 [56.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 tk8.6-blt2.5 arm64 2.5.3+dfsg-7+b1 [538 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 blt arm64 2.5.3+dfsg-7+b1 [6344 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 74.1.2-2 [213 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 74.1.2-2 [736 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20241024 [109 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 fonts-lyx all 2.4.2.1-1 [190 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libimagequant0 arm64 2.18.0-1+b2 [34.6 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 113 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 114 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 liblbfgsb0 arm64 3.0+dfsg.4-1+b2 [25.6 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 liblcms2-2 arm64 2.16-2 [151 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libopenjp2-7 arm64 2.5.0-2+b4 [185 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.6-1 [9952 B] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.6-1 [1064 B] Get: 125 http://deb.debian.org/debian trixie/main arm64 libqhull-r8.0 arm64 2020.2-6+b2 [229 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libraqm0 arm64 0.10.1-1+b2 [13.8 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libwebpdemux2 arm64 1.4.0-0.1+b1 [110 kB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libwebpmux3 arm64 1.4.0-0.1+b1 [122 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 libxslt1.1 arm64 1.1.35-1.1+b1 [222 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 python-matplotlib-data all 3.8.3-3 [2731 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.6-1 [1040 B] Get: 135 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.6-1 [26.1 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.6-1 [1068 B] Get: 138 http://deb.debian.org/debian trixie/main arm64 python3-appdirs all 1.4.4-4 [12.5 kB] Get: 139 http://deb.debian.org/debian trixie/main arm64 python3-attr all 23.2.0-2 [65.5 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 python3-brotli arm64 1.1.0-2+b6 [306 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 python3-numpy arm64 1:1.26.4+ds-12 [3816 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 python3-contourpy arm64 1.3.0-2+b1 [237 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 python3-xopen all 1.7.0-2 [16.9 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 python3-dnaio arm64 1.2.2-1+b1 [86.6 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 python3-cutadapt arm64 4.7-2+b3 [215 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 python3-cycler all 0.12.1-1 [9496 B] Get: 147 http://deb.debian.org/debian trixie/main arm64 python3-dateutil all 2.9.0-3 [79.3 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 python3-tz all 2024.1-2 [30.9 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 python3-six all 1.16.0-7 [16.4 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 python3-fs all 2.4.16-4 [95.4 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 python3-lxml arm64 5.3.0-1+b1 [1433 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 python3-lz4 arm64 4.0.2+dfsg-1+b6 [25.8 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 python3-scipy arm64 1.13.1-6 [18.2 MB] Get: 155 http://deb.debian.org/debian trixie/main arm64 python3-mpmath all 1.3.0-1 [419 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 python3-sympy all 1.13.3-1 [4147 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 python3-ufolib2 all 0.16.1+dfsg1-1 [32.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 unicode-data all 15.1.0-1 [8547 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 python3-fonttools arm64 4.55.0-3 [1500 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 python3-iniconfig all 1.1.1-2 [6396 B] Get: 161 http://deb.debian.org/debian trixie/main arm64 python3-kiwisolver arm64 1.4.7-2+b1 [71.6 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 python3-pil arm64 10.4.0-1+b1 [498 kB] Get: 163 http://deb.debian.org/debian trixie/main arm64 python3.12-tk arm64 3.12.7-3 [111 kB] Get: 164 http://deb.debian.org/debian trixie/main arm64 python3.13-tk arm64 3.13.0-2 [101 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 python3-tk arm64 3.12.7-1 [9444 B] Get: 166 http://deb.debian.org/debian trixie/main arm64 python3-pil.imagetk arm64 10.4.0-1+b1 [79.9 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 python3-pyparsing all 3.1.2-1 [146 kB] Get: 168 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 python3-matplotlib arm64 3.8.3-3+b1 [5586 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 python3-pandas-lib arm64 2.2.3+dfsg-5+b1 [6028 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 python3-pandas all 2.2.3+dfsg-5 [3096 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 python3-pluggy all 1.5.0-1 [26.9 kB] Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-seaborn all 0.13.2-4 [215 kB] Fetched 117 MB in 1s (224 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pigz_2.8-1+b1_arm64.deb ... Unpacking pigz (2.8-1+b1) ... Selecting previously unselected package libpython3.12-minimal:arm64. Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20417 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21479 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../009-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../011-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../016-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../017-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libpng16-16t64:arm64. Preparing to unpack .../018-libpng16-16t64_1.6.44-2_arm64.deb ... Unpacking libpng16-16t64:arm64 (1.6.44-2) ... Selecting previously unselected package libfreetype6:arm64. Preparing to unpack .../019-libfreetype6_2.13.3+dfsg-1_arm64.deb ... Unpacking libfreetype6:arm64 (2.13.3+dfsg-1) ... Selecting previously unselected package fonts-dejavu-mono. Preparing to unpack .../020-fonts-dejavu-mono_2.37-8_all.deb ... Unpacking fonts-dejavu-mono (2.37-8) ... Selecting previously unselected package fonts-dejavu-core. 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Selecting previously unselected package python3-pil.imagetk:arm64. Preparing to unpack .../143-python3-pil.imagetk_10.4.0-1+b1_arm64.deb ... Unpacking python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Selecting previously unselected package python3-pyparsing. Preparing to unpack .../144-python3-pyparsing_3.1.2-1_all.deb ... Unpacking python3-pyparsing (3.1.2-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../145-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-matplotlib. Preparing to unpack .../146-python3-matplotlib_3.8.3-3+b1_arm64.deb ... Unpacking python3-matplotlib (3.8.3-3+b1) ... Selecting previously unselected package python3-pandas-lib:arm64. Preparing to unpack .../147-python3-pandas-lib_2.2.3+dfsg-5+b1_arm64.deb ... Unpacking python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Selecting previously unselected package python3-pandas. 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Setting up libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Setting up libxau6:arm64 (1:1.0.11-1) ... Setting up libxdmcp6:arm64 (1:1.1.5-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up liblerc4:arm64 (4.0.0+ds-5) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up fonts-lyx (2.4.2.1-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up x11-common (1:7.7+23.1) ... invoke-rc.d: could not determine current runlevel Setting up X socket directories... /tmp/.X11-unix /tmp/.ICE-unix. Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up libdeflate0:arm64 (1.22-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libqhull-r8.0:arm64 (2020.2-6+b2) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libjbig0:arm64 (2.1-6.1+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Nov 25 11:07:09 UTC 2024. Universal Time is now: Mon Nov 25 11:07:09 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libx11-data (2:1.8.10-2) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up libimagequant0:arm64 (2.18.0-1+b2) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up pigz (2.8-1+b1) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libopenjp2-7:arm64 (2.5.0-2+b4) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up netbase (6.4) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up python-matplotlib-data (3.8.3-3) ... Setting up libwebpmux3:arm64 (1.4.0-0.1+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-2) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libwebpdemux2:arm64 (1.4.0-0.1+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libxslt1.1:arm64 (1.1.35-1.1+b1) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up liblbfgsb0:arm64 (3.0+dfsg.4-1+b2) ... Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up python3.12-tk (3.12.7-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3.13-tk (3.13.0-2) ... Setting up libraqm0:arm64 (0.10.1-1+b2) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up tk8.6-blt2.5 (2.5.3+dfsg-7+b1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up blt (2.5.3+dfsg-7+b1) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-tz (2024.1-2) ... Setting up python3-six (1.16.0-7) ... Setting up python3-pil:arm64 (10.4.0-1+b1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-packaging (24.2-1) ... Setting up python3-pyparsing (3.1.2-1) ... Setting up python3-brotli (1.1.0-2+b6) ... Setting up python3-cycler (0.12.1-1) ... Setting up python3-kiwisolver (1.4.7-2+b1) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-pluggy (1.5.0-1) ... Setting up python3-lxml:arm64 (5.3.0-1+b1) ... Setting up python3-dateutil (2.9.0-3) ... Setting up python3-mpmath (1.3.0-1) ... Setting up python3-appdirs (1.4.4-4) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-iniconfig (1.1.1-2) ... Setting up python3-sympy (1.13.3-1) ... Setting up python3-attr (23.2.0-2) ... Setting up python3-pysam (0.22.1+ds-2+b3) ... Setting up libpython3-dev:arm64 (3.12.6-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-lz4 (4.0.2+dfsg-1+b6) ... Setting up python3-pytest (8.3.3-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.6-1) ... Setting up python3-tk:arm64 (3.12.7-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-pil.imagetk:arm64 (10.4.0-1+b1) ... Setting up libpython3-all-dev:arm64 (3.12.6-1) ... Setting up python3-dev (3.12.6-1) ... Setting up python3-pkg-resources (74.1.2-2) ... Setting up python3-all-dev (3.12.6-1) ... Setting up python3-setuptools (74.1.2-2) ... Setting up python3-fs (2.4.16-4) ... Setting up python3-xopen (1.7.0-2) ... Setting up python3-numpy (1:1.26.4+ds-12) ... Setting up python3-contourpy (1.3.0-2+b1) ... Setting up python3-dnaio (1.2.2-1+b1) ... Setting up dh-python (6.20241024) ... Setting up python3-scipy (1.13.1-6) ... Setting up python3-pandas-lib:arm64 (2.2.3+dfsg-5+b1) ... Setting up python3-pandas (2.2.3+dfsg-5) ... Setting up python3-cutadapt (4.7-2+b3) ... Setting up python3-fonttools (4.55.0-3) ... Setting up python3-ufolib2 (0.16.1+dfsg1-1) ... Setting up python3-matplotlib (3.8.3-3+b1) ... Setting up python3-seaborn (0.13.2-4) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes dpkg-buildpackage: info: source package python-sqt dpkg-buildpackage: info: source version 0.8.0-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Lance Lin dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py debian/rules clean dh clean --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild pybuild --clean -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py clean /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running clean removing '/build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-sqt.substvars debian/files rm -fr -- debian/python3-sqt/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild pybuild --configure -i python{version} -p 3.12 I: pybuild base:311: python3.12 setup.py config /build/reproducible-path/python-sqt-0.8.0/versioneer.py:485: SyntaxWarning: invalid escape sequence '\s' LONG_VERSION_PY['git'] = ''' /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running config dh_auto_build -O--buildsystem=pybuild pybuild --build -i python{version} -p 3.12 I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running build running build_py creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt copying sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io copying sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands copying sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): /usr/lib/python3/dist-packages/Cython/Compiler/Main.py:381: FutureWarning: Cython directive 'language_level' not set, using '3str' for now (Py3). This has changed from earlier releases! File: /build/reproducible-path/python-sqt-0.8.0/sqt/_helpers.pyx tree = Parsing.p_module(s, pxd, full_module_name) Compiling sqt/_helpers.pyx because it changed. [1/1] Cythonizing sqt/_helpers.pyx building 'sqt._helpers' extension creating build creating build/temp.linux-aarch64-cpython-312 creating build/temp.linux-aarch64-cpython-312/sqt aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I/usr/include/python3.12 -c sqt/_helpers.c -o build/temp.linux-aarch64-cpython-312/sqt/_helpers.o sqt/_helpers.c: In function ‘__pyx_pf_3sqt_8_helpers_12nt_to_aa’: sqt/_helpers.c:22538:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22538 | __pyx_v_nt0 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[__pyx_v_i])]); | ~~~~~~~~~~^~~~~~~~~~~~ sqt/_helpers.c:22547:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22547 | __pyx_v_nt1 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 1)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ sqt/_helpers.c:22556:51: warning: array subscript has type ‘char’ [-Wchar-subscripts] 22556 | __pyx_v_nt2 = (__pyx_v_nt_trans_ptr[(__pyx_v_b[(__pyx_v_i + 2)])]); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -Wl,-z,now -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/python-sqt-0.8.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/sqt/_helpers.o -L/usr/lib/aarch64-linux-gnu -o /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-sqt-0.8.0' LC_ALL=C.UTF-8 dh_auto_test pybuild --test --test-pytest -i python{version} -p 3.12 I: pybuild base:311: cd /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build; python3.12 -m pytest tests ============================= test session starts ============================== platform linux -- Python 3.12.7, pytest-8.3.3, pluggy-1.5.0 rootdir: /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build configfile: pytest.ini plugins: typeguard-4.4.1 collected 45 items tests/testalign.py ....... [ 15%] tests/testcigar.py ........... [ 40%] tests/testcolorspace.py .. [ 44%] tests/testdna.py ...... [ 57%] tests/testfasta.py ............. [ 86%] tests/testindexedfasta.py ... [ 93%] tests/testintervaltree.py . [ 95%] tests/testmedian.py . [ 97%] tests/testregion.py . [100%] ============================== 45 passed in 5.86s ============================== rm -fr -- /tmp/dh-xdg-rundir-0qhBgkW7 make[1]: Leaving directory '/build/reproducible-path/python-sqt-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild rm -f -- debian/python3-sqt.substvars rm -fr -- debian/.debhelper/generated/python3-sqt/ debian/python3-sqt/ debian/tmp/ dh_auto_install --destdir=debian/python3-sqt/ -O--buildsystem=pybuild install -m0755 -d /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt pybuild --install -i python{version} -p 3.12 --dest-dir /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:261: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py UPDATING /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py set /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py to '0.8.0' running build_ext /build/reproducible-path/python-sqt-0.8.0/setup.py:48: DeprecationWarning: distutils Version classes are deprecated. Use packaging.version instead. if LooseVersion(cyversion) < LooseVersion(MIN_CYTHON_VERSION): running install_lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12 creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/stepwise -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/v/cache/nodeids -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache/v/cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/CACHEDIR.TAG -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/.gitignore -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/.pytest_cache/README.md -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/.pytest_cache creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_version.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/region.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/math.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/intervaltree.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/dna.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/colorspace.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/utils.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/align.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/cigar.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_codons.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/compat.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/args.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/_version.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_helpers.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/addadapt.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bam2fastq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bameof.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/bamstats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/chars.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkfastqpe.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/checkvcfref.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/compare_sequences.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/coverage.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/cutvect.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastaextract.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastagrep.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastastats.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fastxmod.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/fixbam64.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/histogram.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/mutate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qgramfreq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/qualityguess.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/randomseq.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readcov.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/readlenhisto.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samfixn.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/samsetop.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/simreads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/commands/translate.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io creating /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/gtf.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/fasta.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__pycache__/__init__.cpython-312.pyc -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__pycache__ copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/bam.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/fasta.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/gtf.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/io/sff.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__init__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/__main__.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/_codons.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/align.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/ansicolor.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/args.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/cigar.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/colorspace.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/compat.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/dna.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/intervaltree.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/math.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/qualtrim.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/reads.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/region.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt copying /build/reproducible-path/python-sqt-0.8.0/.pybuild/cpython3_3.12_sqt/build/sqt/utils.py -> /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_version.py to _version.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/addadapt.py to addadapt.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bam2fastq.py to bam2fastq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bameof.py to bameof.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/bamstats.py to bamstats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/chars.py to chars.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkfastqpe.py to checkfastqpe.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/checkvcfref.py to checkvcfref.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/compare_sequences.py to compare_sequences.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/coverage.py to coverage.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/cutvect.py to cutvect.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastaextract.py to fastaextract.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastagrep.py to fastagrep.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastastats.py to fastastats.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fastxmod.py to fastxmod.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/fixbam64.py to fixbam64.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/histogram.py to histogram.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/mutate.py to mutate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qgramfreq.py to qgramfreq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/qualityguess.py to qualityguess.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/randomseq.py to randomseq.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readcov.py to readcov.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/readlenhisto.py to readlenhisto.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samfixn.py to samfixn.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/samsetop.py to samsetop.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/simreads.py to simreads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/commands/translate.py to translate.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/bam.py to bam.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/fasta.py to fasta.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/gtf.py to gtf.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/io/sff.py to sff.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/__main__.py to __main__.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/_codons.py to _codons.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/align.py to align.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/ansicolor.py to ansicolor.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/args.py to args.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/cigar.py to cigar.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/colorspace.py to colorspace.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/compat.py to compat.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/dna.py to dna.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/intervaltree.py to intervaltree.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/math.py to math.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/qualtrim.py to qualtrim.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/reads.py to reads.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/region.py to region.cpython-312.pyc byte-compiling /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt/utils.py to utils.cpython-312.pyc running install_egg_info running egg_info creating sqt.egg-info writing sqt.egg-info/PKG-INFO writing dependency_links to sqt.egg-info/dependency_links.txt writing entry points to sqt.egg-info/entry_points.txt writing requirements to sqt.egg-info/requires.txt writing top-level names to sqt.egg-info/top_level.txt writing manifest file 'sqt.egg-info/SOURCES.txt' reading manifest file 'sqt.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' writing manifest file 'sqt.egg-info/SOURCES.txt' Copying sqt.egg-info to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/lib/python3.12/dist-packages/sqt-0.8.0.egg-info Skipping SOURCES.txt running install_scripts Installing sqt script to /build/reproducible-path/python-sqt-0.8.0/debian/python3-sqt/usr/bin dh_installdocs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/README.Debian debian/python3-sqt/usr/share/doc/python3-sqt/README.Debian install -p -m0644 debian/copyright debian/python3-sqt/usr/share/doc/python3-sqt/copyright dh_installchangelogs -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/doc/python3-sqt install -p -m0644 debian/.debhelper/generated/python3-sqt/dh_installchangelogs.dch.trimmed debian/python3-sqt/usr/share/doc/python3-sqt/changelog.Debian dh_installman -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/usr/share/man/man1/ install -p -m0644 ./debian/sqt.1 debian/python3-sqt/usr/share/man/man1/sqt.1 man-recode --to-code UTF-8 --suffix .dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 mv debian/python3-sqt/usr/share/man/man1/sqt.1.dh-new debian/python3-sqt/usr/share/man/man1/sqt.1 chmod 0644 -- debian/python3-sqt/usr/share/man/man1/sqt.1 dh_python3 -O--buildsystem=pybuild D: dh_python3 dh_python3:180: version: 6.20241024 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild']) D: dh_python3 dh_python3:183: supported Python versions: 3.12 (default=3.12) D: dh_python3 debhelper:174: source=python-sqt, binary packages=['python3-sqt'] D: dh_python3 dh_python3:205: processing package python3-sqt... D: dh_python3 fs:50: moving files from debian/python3-sqt/usr/lib/python3.12/dist-packages to debian/python3-sqt/usr/lib/python3/dist-packages/ D: dh_python3 fs:249: removing dist-packages/.pytest_cache D: dh_python3 fs:338: package python3-sqt details = {'requires.txt': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/requires.txt'}, 'egg-info': {'debian/python3-sqt/usr/lib/python3/dist-packages/sqt-0.8.0.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': {/usr/bin/python3}, 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': True, 'ext_vers': {Version('3.12')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-sqt D: dh_python3 pydist:175: trying to find dependency for cutadapt (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for matplotlib (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for pysam!=0.9.0 (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for seaborn (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 pydist:175: trying to find dependency for xopen (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps D: dh_python3 depends:253: D={'python3-pysam', 'python3-cutadapt', 'python3-matplotlib', 'python3 (>= 3.12~)', 'python3:any', 'python3-seaborn', 'python3 (<< 3.13)', 'python3-xopen'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild cd debian/python3-sqt chmod a-x usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 gzip -9nf usr/share/doc/python3-sqt/changelog.Debian usr/share/man/man1/sqt.1 cd '/build/reproducible-path/python-sqt-0.8.0' dh_fixperms -O--buildsystem=pybuild find debian/python3-sqt ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-sqt/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-sqt/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-sqt/usr/share/man -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-sqt/usr/bin -type f -a -true -a -true -print0 2>/dev/null | xargs -0r chmod a+x find debian/python3-sqt/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz -- debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dh_strip -a -O--buildsystem=pybuild install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40 objcopy --only-keep-debug --compress-debug-sections debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-sqt/dbgsym-root/usr/lib/debug/.build-id/40/9a6ebd45d451b1252a7189a0333f0a1fad36cd.debug debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc ln -s python3-sqt debian/.debhelper/python3-sqt/dbgsym-root/usr/share/doc/python3-sqt-dbgsym install -m0755 -d debian/.debhelper/python3-sqt dh_makeshlibs -a -O--buildsystem=pybuild rm -f debian/python3-sqt/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN dpkg-shlibdeps -Tdebian/python3-sqt.substvars debian/python3-sqt/usr/lib/python3/dist-packages/sqt/_helpers.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/postinst cat debian/python3-sqt.postinst.debhelper >> debian/python3-sqt/DEBIAN/postinst chmod 0755 -- debian/python3-sqt/DEBIAN/postinst printf '#!/bin/sh\nset -e\n' > debian/python3-sqt/DEBIAN/prerm cat debian/python3-sqt.prerm.debhelper >> debian/python3-sqt/DEBIAN/prerm chmod 0755 -- debian/python3-sqt/DEBIAN/prerm dh_gencontrol -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN echo misc:Depends= >> debian/python3-sqt.substvars echo misc:Pre-Depends= >> debian/python3-sqt.substvars install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/.debhelper/python3-sqt/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-sqt-dbgsym "-DDepends=python3-sqt (= \${binary:Version})" "-DDescription=debug symbols for python3-sqt" -DBuild-Ids=409a6ebd45d451b1252a7189a0333f0a1fad36cd -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-sqt -ldebian/changelog -Tdebian/python3-sqt.substvars -cdebian/control -Pdebian/python3-sqt chmod 0644 -- debian/python3-sqt/DEBIAN/control dh_md5sums -O--buildsystem=pybuild install -m0755 -d debian/python3-sqt/DEBIAN cd debian/python3-sqt >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-sqt/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN cd debian/.debhelper/python3-sqt/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-sqt/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-sqt .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root .. dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_arm64.deb'. dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../python-sqt_0.8.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-source: info: using options from python-sqt-0.8.0/debian/source/options: --extend-diff-ignore=sqt/_version.py dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1526898 and its subdirectories I: Current time: Tue Nov 26 01:08:16 +14 2024 I: pbuilder-time-stamp: 1732532896 + false + set +x Mon Nov 25 11:08:16 UTC 2024 I: Signing ./b2/python-sqt_0.8.0-8_arm64.buildinfo as python-sqt_0.8.0-8_arm64.buildinfo.asc Mon Nov 25 11:08:16 UTC 2024 I: Signed ./b2/python-sqt_0.8.0-8_arm64.buildinfo as ./b2/python-sqt_0.8.0-8_arm64.buildinfo.asc Mon Nov 25 11:08:16 UTC 2024 - build #2 for python-sqt/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Mon Nov 25 11:08:16 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-aa7zkkXL, removing. /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3: total 140 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 11:06 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 25 11:08 b2 -rw-r--r-- 1 jenkins jenkins 2200 Dec 6 2023 python-sqt_0.8.0-8.dsc -rw------- 1 jenkins jenkins 123039 Nov 25 11:06 rbuildlog.FNWWOVg /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1: total 700 -rw-r--r-- 1 jenkins jenkins 119411 Nov 25 11:06 build.log -rw-r--r-- 1 jenkins jenkins 6984 Nov 25 11:06 python-sqt_0.8.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2200 Nov 25 11:06 python-sqt_0.8.0-8.dsc -rw-r--r-- 1 jenkins jenkins 9849 Nov 25 11:06 python-sqt_0.8.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10731 Nov 25 11:06 python-sqt_0.8.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1730 Nov 25 11:06 python-sqt_0.8.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1561 Nov 25 11:06 python-sqt_0.8.0-8_source.changes -rw-r--r-- 1 jenkins jenkins 405800 Nov 25 11:06 python3-sqt-dbgsym_0.8.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 122920 Nov 25 11:06 python3-sqt_0.8.0-8_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2: total 688 -rw-r--r-- 1 jenkins jenkins 121354 Nov 25 11:08 build.log -rw-r--r-- 1 jenkins jenkins 6984 Nov 25 11:08 python-sqt_0.8.0-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2200 Nov 25 11:08 python-sqt_0.8.0-8.dsc -rw-r--r-- 1 jenkins jenkins 9849 Nov 25 11:08 python-sqt_0.8.0-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 10731 Nov 25 11:08 python-sqt_0.8.0-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1730 Nov 25 11:08 python-sqt_0.8.0-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 1561 Nov 25 11:08 python-sqt_0.8.0-8_source.changes -rw-r--r-- 1 jenkins jenkins 405800 Nov 25 11:08 python3-sqt-dbgsym_0.8.0-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 122920 Nov 25 11:08 python3-sqt_0.8.0-8_arm64.deb Mon Nov 25 11:08:17 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Mon Nov 25 11:08:20 UTC 2024 I: python-sqt_0.8.0-8_arm64.changes: Format: 1.8 Date: Tue, 05 Dec 2023 21:43:36 +0700 Source: python-sqt Binary: python3-sqt python3-sqt-dbgsym Architecture: arm64 Version: 0.8.0-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Lance Lin Description: python3-sqt - SeQuencing Tools for biological DNA/RNA high-throughput data Closes: 1049145 Changes: python-sqt (0.8.0-8) unstable; urgency=medium . * Team upload. * Packaging update * Standards-Version: 4.6.2 (routine-update) * Build-Depends: s/dh-python/dh-sequence-python3/ (routine-update) * d/source/options: Remove .egg-info/ exclude-diff-ignore and add sqt/_version.py (Closes: #1049145) * d/control: Replace autopkgtest-pkg-python with autopkgtest-pkg-pybuild * d/rules: Add hardening option Checksums-Sha1: 0d0d552fb8abfea0a083994bcaf5f675d59adecb 9849 python-sqt_0.8.0-8_arm64.buildinfo 1376170cb5566140931128618fe6054a82fc72f1 405800 python3-sqt-dbgsym_0.8.0-8_arm64.deb 7ebcd816c634c6d7c896a299cfde00c49671517e 122920 python3-sqt_0.8.0-8_arm64.deb Checksums-Sha256: 2bc83ad659da27555a5780258795997418200bf83bcf25b33dcff70e481791dd 9849 python-sqt_0.8.0-8_arm64.buildinfo e7dbdcd64d2267a0598035a6402f3d54581db11855cba2c70813397514d5814e 405800 python3-sqt-dbgsym_0.8.0-8_arm64.deb 58a68520e80d2c828e98452478aadd46ca92ac457ea1987d29c130f95cb12735 122920 python3-sqt_0.8.0-8_arm64.deb Files: 1c9abf17341b361a4acc87e12e83a939 9849 science optional python-sqt_0.8.0-8_arm64.buildinfo ec6de6c93828bbe5f51dc1ff05022f2a 405800 debug optional python3-sqt-dbgsym_0.8.0-8_arm64.deb 480d12c9aaf107bc3bafcb0f695b5d7a 122920 python optional python3-sqt_0.8.0-8_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-sqt_0.8.0-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-sqt_0.8.0-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-sqt_0.8.0-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-sqt_0.8.0-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/python-sqt_0.8.0-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-sqt_0.8.0-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-25 11:06:41.919670829 +0000 +++ b2/build.log 2024-11-25 11:08:17.727356300 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Dec 28 05:28:10 -12 2025 -I: pbuilder-time-stamp: 1766942890 +I: Current time: Tue Nov 26 01:06:44 +14 2024 +I: pbuilder-time-stamp: 1732532804 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -31,52 +31,84 @@ dpkg-source: info: applying python-3.12.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 25 11:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='43b8494fdce84b0a807889d72ec7ebfc' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2245912' - PS1='# ' - PS2='> ' + INVOCATION_ID=60b66a5b08d746288f724985b212e03e + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1526898 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_rouR --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1 --logfile b1/build.log python-sqt_0.8.0-8.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/pbuilderrc_0OEr --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2 --logfile b2/build.log python-sqt_0.8.0-8.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2245912/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -305,7 +337,7 @@ Get: 173 http://deb.debian.org/debian trixie/main arm64 python3-pysam arm64 0.22.1+ds-2+b3 [3903 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 python3-pytest all 8.3.3-1 [249 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 python3-seaborn all 0.13.2-4 [215 kB] -Fetched 117 MB in 0s (238 MB/s) +Fetched 117 MB in 1s (224 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package pigz. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -883,8 +915,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Dec 28 17:28:36 UTC 2025. -Universal Time is now: Sun Dec 28 17:28:36 UTC 2025. +Local time is now: Mon Nov 25 11:07:09 UTC 2024. +Universal Time is now: Mon Nov 25 11:07:09 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up unicode-data (15.1.0-1) ... @@ -1039,7 +1071,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-sqt-0.8.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-sqt_0.8.0-8_source.changes dpkg-buildpackage: info: source package python-sqt dpkg-buildpackage: info: source version 0.8.0-8 dpkg-buildpackage: info: source distribution unstable @@ -1195,8 +1231,8 @@ tests/testmedian.py . [ 97%] tests/testregion.py . [100%] -============================== 45 passed in 5.81s ============================== - rm -fr -- /tmp/dh-xdg-rundir-CCiRIHaf +============================== 45 passed in 5.86s ============================== + rm -fr -- /tmp/dh-xdg-rundir-0qhBgkW7 make[1]: Leaving directory '/build/reproducible-path/python-sqt-0.8.0' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild @@ -1420,7 +1456,7 @@ D: dh_python3 pydist:175: trying to find dependency for xopen (python=None) D: dh_python3 pydist:209: dependency: module seems to be installed D: dh_python3 pydist:284: dependency: included in build-deps -D: dh_python3 depends:253: D={'python3-xopen', 'python3-matplotlib', 'python3-cutadapt', 'python3-pysam', 'python3:any', 'python3-seaborn', 'python3 (>= 3.12~)', 'python3 (<< 3.13)'}; R=[]; S=[]; E=[], B=[]; RT=[] +D: dh_python3 depends:253: D={'python3-pysam', 'python3-cutadapt', 'python3-matplotlib', 'python3 (>= 3.12~)', 'python3:any', 'python3-seaborn', 'python3 (<< 3.13)', 'python3-xopen'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild @@ -1486,8 +1522,8 @@ dh_builddeb -O--buildsystem=pybuild dpkg-deb --root-owner-group --build debian/python3-sqt .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-sqt/dbgsym-root .. -dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_arm64.deb'. dpkg-deb: building package 'python3-sqt' in '../python3-sqt_0.8.0-8_arm64.deb'. +dpkg-deb: building package 'python3-sqt-dbgsym' in '../python3-sqt-dbgsym_0.8.0-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-sqt_0.8.0-8_arm64.buildinfo dpkg-genchanges --build=binary -O../python-sqt_0.8.0-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1496,12 +1532,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1526898/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2245912 and its subdirectories -I: Current time: Sun Dec 28 05:29:40 -12 2025 -I: pbuilder-time-stamp: 1766942980 +I: removing directory /srv/workspace/pbuilder/1526898 and its subdirectories +I: Current time: Tue Nov 26 01:08:16 +14 2024 +I: pbuilder-time-stamp: 1732532896 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-sqt_0.8.0-8.diff: 67.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-sqt_0.8.0-8.diff.gz b2/build.log: 84.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 84.7% -- replaced with stdout Mon Nov 25 11:08:21 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-sqt_trixie_arm64_1732532901 + touch /var/log/reproducible-builds/diffoscope_stamp_python-sqt_trixie_arm64_1732532901 + RESULT=0 + systemd-run '--description=diffoscope on python-sqt/0.8.0-8 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_21-40562 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3 --run-session -c jenkins-reproducible-trixie-diffoscope-7f9d1503-f7bc-4a4a-bf78-32875d62156b -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/dbd-tmp-CH3Gpkb ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1/python-sqt_0.8.0-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2/python-sqt_0.8.0-8_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_21-40562.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/python-sqt_0.8.0-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b1/python-sqt_0.8.0-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.7VShZod3/b2/python-sqt_0.8.0-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.354s) 0.354s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 674ms CPU time consumed: 673ms _ _ _ _ __ _ _| |_| |__ ___ _ __ ___ __ _| |_ | '_ \| | | | __| '_ \ / _ \| '_ \ _____/ __|/ _` | __| | |_) | |_| | |_| | | | (_) | | | |_____\__ \ (_| | |_ | .__/ \__, |\__|_| |_|\___/|_| |_| |___/\__, |\__| |_| |___/ |_| Mon Nov 25 11:08:22 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Mon Nov 25 11:08:22 UTC 2024 I: python-sqt from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-25 11:08:22] INFO: Starting at 2024-11-25 11:08:22.725436 [2024-11-25 11:08:22] INFO: Generating the pages of 1 package(s) [2024-11-25 11:08:23] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/python-sqt didn't produce a buildlog, even though it has been built. [2024-11-25 11:08:23] INFO: Finished at 2024-11-25 11:08:23.286531, took: 0:00:00.561103 Mon Nov 25 11:08:23 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/python-sqt.html Mon Nov 25 11:08:23 UTC 2024 I: Submitting .buildinfo files to external archives: Mon Nov 25 11:08:23 UTC 2024 I: Submitting 12K b1/python-sqt_0.8.0-8_arm64.buildinfo.asc https://buildinfo.debian.net/0d0d552fb8abfea0a083994bcaf5f675d59adecb/python-sqt_0.8.0-8_arm64 Mon Nov 25 11:08:24 UTC 2024 I: Submitting 12K b2/python-sqt_0.8.0-8_arm64.buildinfo.asc https://buildinfo.debian.net/9fd44b353eb3cf3a451d9e1cba3834f622c32591/python-sqt_0.8.0-8_arm64 Mon Nov 25 11:08:25 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Nov 25 11:08:25 UTC 2024 I: Done submitting .buildinfo files. Mon Nov 25 11:08:25 UTC 2024 I: Removing signed python-sqt_0.8.0-8_arm64.buildinfo.asc files: removed './b1/python-sqt_0.8.0-8_arm64.buildinfo.asc' removed './b2/python-sqt_0.8.0-8_arm64.buildinfo.asc' 1732532905 arm64 trixie python-sqt Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-sqt_0.8.0-8.rbuild.log: 83.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-sqt_0.8.0-8.rbuild.log.gz [2024-11-25 11:08:25] INFO: Starting at 2024-11-25 11:08:25.535801 [2024-11-25 11:08:25] INFO: Generating the pages of 1 package(s) [2024-11-25 11:08:26] INFO: Finished at 2024-11-25 11:08:26.128950, took: 0:00:00.593158 All cleanup done. Mon Nov 25 11:08:26 UTC 2024 - total duration: 0h 3m 36s. Mon Nov 25 11:08:26 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Pd9TxjCY, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 3min 40.107s CPU time consumed: 7.783s