Running as unit: rb-build-arm64_21-49383.service ==================================================================================== Mon Jan 20 10:14:16 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_21) on jenkins, called using "codethink03-arm64 codethink02-arm64" as arguments. Mon Jan 20 10:14:16 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Rka97JfH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jan 20 10:14:16 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Jan 20 10:14:16 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-38H57x' Mon Jan 20 10:14:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Mon Jan 20 10:14:17 UTC 2025 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-rvvLTe' ok, let's check if python-freecontact is building anywhere yet… ok, python-freecontact is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of python-freecontact in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink02-arm64.debian.net. ============================================================================= Mon Jan 20 10:14:24 UTC 2025 I: starting to build python-freecontact/trixie/arm64 on jenkins on '2025-01-20 10:14' Mon Jan 20 10:14:24 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_21/49383/console.log 1737368064 arm64 trixie python-freecontact Mon Jan 20 10:14:24 UTC 2025 I: Downloading source for trixie/python-freecontact=1.1-9 --2025-01-20 10:14:25-- http://deb.debian.org/debian/pool/main/p/python-freecontact/python-freecontact_1.1-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1638 (1.6K) [text/prs.lines.tag] Saving to: ‘python-freecontact_1.1-9.dsc’ 0K . 100% 261M=0s 2025-01-20 10:14:25 (261 MB/s) - ‘python-freecontact_1.1-9.dsc’ saved [1638/1638] --2025-01-20 10:14:25-- http://deb.debian.org/debian/pool/main/p/python-freecontact/python-freecontact_1.1-9.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1638 (1.6K) [text/prs.lines.tag] Saving to: ‘python-freecontact_1.1-9.dsc’ 0K . 100% 261M=0s 2025-01-20 10:14:25 (261 MB/s) - ‘python-freecontact_1.1-9.dsc’ saved [1638/1638] Mon Jan 20 10:14:25 UTC 2025 I: python-freecontact_1.1-9.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: python-freecontact Binary: python3-freecontact Architecture: any Version: 1.1-9 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Alexandre Mestiashvili Homepage: https://rostlab.org/owiki/index.php/FreeContact Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/python-freecontact Vcs-Git: https://salsa.debian.org/med-team/python-freecontact.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev, python3-setuptools Package-List: python3-freecontact deb python optional arch=any Checksums-Sha1: 18a0f44daa9d1a10cdcce0e48cf7b0d914228868 65968 python-freecontact_1.1.orig.tar.gz e8ad8e853454a9e331bfdb63c44c168b3ad03631 4504 python-freecontact_1.1-9.debian.tar.xz Checksums-Sha256: 895e06aa9f7878f7fff34b8f851ee361967a3cc1f3b441de32dbcbf1f31aaa85 65968 python-freecontact_1.1.orig.tar.gz 68292083e1c617c7ab37d8eb8060ca3a0727361083e2d46a12c009f32f802652 4504 python-freecontact_1.1-9.debian.tar.xz Files: 17a99d6514c125b4005f0cd494ae81a4 65968 python-freecontact_1.1.orig.tar.gz a0920f1fce2a4f9a46332e9a1f7aa33b 4504 python-freecontact_1.1-9.debian.tar.xz -----BEGIN PGP SIGNATURE----- iIgEARYIADAWIQSglbZu4JAkvuai8HIqJ5BL1yQ+2gUCZ4ZkXRIcbmlsZXNoQGRl Ymlhbi5vcmcACgkQKieQS9ckPto9WAD+KdGMnGQ3zLUf9PxXJvjxPk6T/4olOTk1 IUc5tkMchjwBAM+fDK44shJ2QQ99wbkcF3vdm2bzSF5eu0lZlOe4bkcA =jRzn -----END PGP SIGNATURE----- Mon Jan 20 10:14:25 UTC 2025 I: Checking whether the package is not for us Mon Jan 20 10:14:25 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Mon Jan 20 10:14:25 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Mon Jan 20 10:14:25 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Mon Jan 20 10:14:25 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-neiuzt' ==================================================================================== Sun Feb 22 16:37:25 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 python-freecontact trixie /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI 1.1-9" as arguments. Sun Feb 22 16:37:26 UTC 2026 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Mne2FP6x" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sun Feb 22 16:37:26 UTC 2026 I: Downloading source for trixie/python-freecontact=1.1-9 Reading package lists... NOTICE: 'python-freecontact' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-freecontact.git Please use: git clone https://salsa.debian.org/med-team/python-freecontact.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (dsc) [1638 B] Get:2 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (tar) [66.0 kB] Get:3 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (diff) [4504 B] Fetched 72.1 kB in 0s (1348 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-freecontact' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-freecontact.git Please use: git clone https://salsa.debian.org/med-team/python-freecontact.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (dsc) [1638 B] Get:2 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (tar) [66.0 kB] Get:3 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (diff) [4504 B] Fetched 72.1 kB in 0s (1348 kB/s) Download complete and in download only mode ============================================================================= Building python-freecontact in trixie on arm64 on codethink03-arm64 now. Date: Sun Feb 22 16:37:26 GMT 2026 Date UTC: Sun Feb 22 16:37:26 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 22 04:37:26 -12 2026 I: pbuilder-time-stamp: 1771778246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freecontact_1.1-9.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freecontact_1.1-9.dsc: unsupported subcommand dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_test_failed.patch dpkg-source: info: applying fix_boost_linkage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b5f85b0896444c919734dfbbf29938fe' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1788724' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_kQsO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1 --logfile b1/build.log python-freecontact_1.1-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 63.2 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.8-5 [1985 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.8-5 [4822 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.8-1 [10.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.8-5 [506 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.8-1 [26.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libfreecontact0t64 arm64 1.0.21-14 [74.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libfreecontact-dev arm64 1.0.21-14 [85.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.8-1 [1068 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.8-1 [1068 B] Fetched 63.2 MB in 1s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... 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Selecting previously unselected package libgfortran5:arm64. Preparing to unpack .../60-libgfortran5_14.2.0-12_arm64.deb ... Unpacking libgfortran5:arm64 (14.2.0-12) ... Selecting previously unselected package liblapack3:arm64. Preparing to unpack .../61-liblapack3_3.12.0-4_arm64.deb ... Unpacking liblapack3:arm64 (3.12.0-4) ... Selecting previously unselected package libfreecontact0t64:arm64. Preparing to unpack .../62-libfreecontact0t64_1.0.21-14_arm64.deb ... Unpacking libfreecontact0t64:arm64 (1.0.21-14) ... Selecting previously unselected package libfreecontact-dev:arm64. Preparing to unpack .../63-libfreecontact-dev_1.0.21-14_arm64.deb ... Unpacking libfreecontact-dev:arm64 (1.0.21-14) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../64-libpython3.13-stdlib_3.13.1-3_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.1-3) ... Selecting previously unselected package libpython3.13:arm64. Preparing to unpack .../65-libpython3.13_3.13.1-3_arm64.deb ... Unpacking libpython3.13:arm64 (3.13.1-3) ... Selecting previously unselected package libpython3.13-dev:arm64. Preparing to unpack .../66-libpython3.13-dev_3.13.1-3_arm64.deb ... Unpacking libpython3.13-dev:arm64 (3.13.1-3) ... Selecting previously unselected package libpython3-all-dev:arm64. Preparing to unpack .../67-libpython3-all-dev_3.12.8-1_arm64.deb ... Unpacking libpython3-all-dev:arm64 (3.12.8-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../68-python3.13_3.13.1-3_arm64.deb ... Unpacking python3.13 (3.13.1-3) ... Selecting previously unselected package python3-all. Preparing to unpack .../69-python3-all_3.12.8-1_arm64.deb ... Unpacking python3-all (3.12.8-1) ... Selecting previously unselected package python3.13-dev. Preparing to unpack .../70-python3.13-dev_3.13.1-3_arm64.deb ... Unpacking python3.13-dev (3.13.1-3) ... Selecting previously unselected package python3-all-dev. Preparing to unpack .../71-python3-all-dev_3.12.8-1_arm64.deb ... Unpacking python3-all-dev (3.12.8-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libboost-python1.83.0 (1.83.0-4) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 22 16:38:02 UTC 2026. Universal Time is now: Sun Feb 22 16:38:02 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libfreecontact0t64:arm64 (1.0.21-14) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libfreecontact-dev:arm64 (1.0.21-14) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.13-dev (3.13.1-3) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3.12t64:arm64 (3.12.8-5) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.8-5) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.8-5) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.8-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-all-dev (3.12.8-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p "3.13 3.12" I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/reproducible-path/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.004638 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.081513 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.55485 secs, inverted matrix (incl LUf) in 12.1751 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 12.3498 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.00492 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.088246 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 5.59158 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.155394 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.55296 secs, inverted matrix (incl LUf) in 11.6854 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 32.349s OK I: pybuild base:311: python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.004578 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.088152 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.4846 secs, inverted matrix (incl LUf) in 12.3296 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 12.5232 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004973 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.077725 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 6.08605 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.090285 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 4.52525 secs, inverted matrix (incl LUf) in 16.444 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 37.568s OK rm -fr -- /tmp/dh-xdg-rundir-YACEi4A0 make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install --destdir=debian/python3-freecontact/ -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p "3.13 3.12" --dest-dir=/build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/.debhelper/generated/python3-freecontact/dh_installchangelogs.dch.trimmed debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild', '--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:205: processing package python3-freecontact... D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.12/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.13/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-freecontact D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/reproducible-path/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_dwz -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug chmod 0644 -- debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-freecontact/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-freecontact/usr/lib/debug install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym install -m0755 -d debian/.debhelper/python3-freecontact dh_makeshlibs -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" "-DBuild-Ids=46241dbab10dca8ef7e6f826ae8757ea4ce2333f e28bba8ff9bc3520a2aa53236848725c4db40fdd" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/python3-freecontact chmod 0644 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-9_arm64.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-9_arm64.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1788724 and its subdirectories I: Current time: Sun Feb 22 04:40:00 -12 2026 I: pbuilder-time-stamp: 1771778400 Sun Feb 22 16:40:00 UTC 2026 I: Signing ./b1/python-freecontact_1.1-9_arm64.buildinfo as python-freecontact_1.1-9_arm64.buildinfo.asc Sun Feb 22 16:40:00 UTC 2026 I: Signed ./b1/python-freecontact_1.1-9_arm64.buildinfo as ./b1/python-freecontact_1.1-9_arm64.buildinfo.asc Sun Feb 22 16:40:00 UTC 2026 - build #1 for python-freecontact/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Sun Feb 22 16:40:00 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-Mne2FP6x, removing. /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jan 20 10:17 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 20 10:14 b2 -rw-r--r-- 1 jenkins jenkins 1638 Jan 14 13:34 python-freecontact_1.1-9.dsc -rw------- 1 jenkins jenkins 2811 Jan 20 10:14 rbuildlog.u9uZKoo /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1: total 828 -rw-r--r-- 1 jenkins jenkins 65423 Jan 20 10:17 build.log -rw-r--r-- 1 jenkins jenkins 4504 Jan 20 10:17 python-freecontact_1.1-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1638 Jan 20 10:17 python-freecontact_1.1-9.dsc -rw-r--r-- 1 jenkins jenkins 7141 Jan 20 10:17 python-freecontact_1.1-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8023 Jan 20 10:17 python-freecontact_1.1-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1545 Jan 20 10:17 python-freecontact_1.1-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 1361 Jan 20 10:17 python-freecontact_1.1-9_source.changes -rw-r--r-- 1 jenkins jenkins 665848 Jan 20 10:17 python3-freecontact-dbgsym_1.1-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 74388 Jan 20 10:17 python3-freecontact_1.1-9_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2: total 0 Mon Jan 20 10:17:02 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Sun Feb 22 04:37:26 -12 2026 I: pbuilder-time-stamp: 1771778246 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freecontact_1.1-9.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freecontact_1.1-9.dsc: unsupported subcommand dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_test_failed.patch dpkg-source: info: applying fix_boost_linkage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='b5f85b0896444c919734dfbbf29938fe' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1788724' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_kQsO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1 --logfile b1/build.log python-freecontact_1.1-9.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 63.2 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.8-5 [1985 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.8-5 [4822 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.8-1 [10.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.8-5 [506 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.8-1 [26.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libfreecontact0t64 arm64 1.0.21-14 [74.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libfreecontact-dev arm64 1.0.21-14 [85.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.8-1 [1068 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.8-1 [1068 B] Fetched 63.2 MB in 1s (105 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_arm64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../06-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../15-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../18-libpython3-stdlib_3.12.8-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3-minimal (3.12.8-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21358 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.8-1_arm64.deb ... Unpacking python3 (3.12.8-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../01-libpython3.13-minimal_3.13.1-3_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.1-3) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../02-python3.13-minimal_3.13.1-3_arm64.deb ... Unpacking python3.13-minimal (3.13.1-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-4_arm64.deb ... Unpacking gettext-base (0.22.5-4) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.4-1_arm64.deb ... Unpacking bsdextrautils (2.40.4-1) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-5_arm64.deb ... Unpacking m4 (1.4.19-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.22.5-4_all.deb ... Unpacking autopoint (0.22.5-4) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.23_all.deb ... Unpacking libdebhelper-perl (13.23) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-2_all.deb ... Unpacking libtool (2.5.4-2) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../24-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../26-libunistring5_1.3-1_arm64.deb ... Unpacking libunistring5:arm64 (1.3-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../27-libicu72_72.1-6_arm64.deb ... Unpacking libicu72:arm64 (72.1-6) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-4_arm64.deb ... Unpacking gettext (0.22.5-4) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... 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Preparing to unpack .../71-python3-all-dev_3.12.8-1_arm64.deb ... Unpacking python3-all-dev (3.12.8-1) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libboost-python1.83.0 (1.83.0-4) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libboost1.83-dev:arm64 (1.83.0-4) ... Setting up libicu72:arm64 (72.1-6) ... Setting up bsdextrautils (2.40.4-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.23) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-4) ... Setting up m4 (1.4.19-5) ... Setting up libcom-err2:arm64 (1.47.2-1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' Local time is now: Sun Feb 22 16:38:02 UTC 2026. Universal Time is now: Sun Feb 22 16:38:02 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libfreecontact0t64:arm64 (1.0.21-14) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libfreecontact-dev:arm64 (1.0.21-14) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.13-dev (3.13.1-3) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3.12t64:arm64 (3.12.8-5) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.8-5) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.8-5) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.8-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-all-dev (3.12.8-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p "3.13 3.12" I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/reproducible-path/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.004638 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.081513 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.55485 secs, inverted matrix (incl LUf) in 12.1751 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 12.3498 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.00492 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.088246 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 5.59158 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.155394 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.55296 secs, inverted matrix (incl LUf) in 11.6854 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 32.349s OK I: pybuild base:311: python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.004578 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.088152 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.4846 secs, inverted matrix (incl LUf) in 12.3296 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 12.5232 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004973 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.077725 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 6.08605 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.090285 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 4.52525 secs, inverted matrix (incl LUf) in 16.444 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 37.568s OK rm -fr -- /tmp/dh-xdg-rundir-YACEi4A0 make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install --destdir=debian/python3-freecontact/ -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p "3.13 3.12" --dest-dir=/build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/.debhelper/generated/python3-freecontact/dh_installchangelogs.dch.trimmed debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild', '--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:205: processing package python3-freecontact... D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.12/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.13/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-freecontact D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/reproducible-path/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_dwz -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug chmod 0644 -- debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-freecontact/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-freecontact/usr/lib/debug install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym install -m0755 -d debian/.debhelper/python3-freecontact dh_makeshlibs -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" "-DBuild-Ids=46241dbab10dca8ef7e6f826ae8757ea4ce2333f e28bba8ff9bc3520a2aa53236848725c4db40fdd" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/python3-freecontact chmod 0644 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-9_arm64.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-9_arm64.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1788724 and its subdirectories I: Current time: Sun Feb 22 04:40:00 -12 2026 I: pbuilder-time-stamp: 1771778400 Mon Jan 20 10:17:03 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Mon Jan 20 10:17:03 UTC 2025 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Mon Jan 20 10:17:03 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Mon Jan 20 10:17:03 UTC 2025 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-d5jA5r' ==================================================================================== Mon Jan 20 10:17:05 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "2 python-freecontact trixie /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI 1.1-9" as arguments. Mon Jan 20 10:17:05 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-wSPJApd9" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Jan 20 10:17:05 UTC 2025 I: Downloading source for trixie/python-freecontact=1.1-9 Reading package lists... NOTICE: 'python-freecontact' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-freecontact.git Please use: git clone https://salsa.debian.org/med-team/python-freecontact.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (dsc) [1638 B] Get:2 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (tar) [66.0 kB] Get:3 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (diff) [4504 B] Fetched 72.1 kB in 0s (2902 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'python-freecontact' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/python-freecontact.git Please use: git clone https://salsa.debian.org/med-team/python-freecontact.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 72.1 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (dsc) [1638 B] Get:2 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (tar) [66.0 kB] Get:3 http://deb.debian.org/debian trixie/main python-freecontact 1.1-9 (diff) [4504 B] Fetched 72.1 kB in 0s (2902 kB/s) Download complete and in download only mode ============================================================================= Re-Building python-freecontact in trixie on arm64 on codethink02-arm64 now. Date: Mon Jan 20 10:17:05 GMT 2025 Date UTC: Mon Jan 20 10:17:05 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_XeJh + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' python-freecontact = debian-installer -o python-freecontact = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' python-freecontact = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_XeJh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2 --logfile b2/build.log python-freecontact_1.1-9.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Jan 21 00:17:05 +14 2025 I: pbuilder-time-stamp: 1737368225 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [python-freecontact_1.1-9.dsc] I: copying [./python-freecontact_1.1.orig.tar.gz] I: copying [./python-freecontact_1.1-9.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./python-freecontact_1.1-9.dsc: unsupported subcommand dpkg-source: info: extracting python-freecontact in python-freecontact-1.1 dpkg-source: info: unpacking python-freecontact_1.1.orig.tar.gz dpkg-source: info: unpacking python-freecontact_1.1-9.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_test_failed.patch dpkg-source: info: applying fix_boost_linkage.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jan 20 10:17 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=67ff59c2aacb424eb04a021ea92bfe05 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1080217 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_XeJh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2 --logfile b2/build.log python-freecontact_1.1-9.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, libboost-python-dev, libfreecontact-dev, python3-all-dev, python3-setuptools dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on libboost-python-dev; however: Package libboost-python-dev is not installed. pbuilder-satisfydepends-dummy depends on libfreecontact-dev; however: Package libfreecontact-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-all-dev; however: Package python3-all-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblas3{a} libboost-python-dev{a} libboost-python1.83-dev{a} libboost-python1.83.0{a} libboost1.83-dev{a} libcom-err2{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libffi8{a} libfile-stripnondeterminism-perl{a} libfreecontact-dev{a} libfreecontact0t64{a} libgfortran5{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} liblapack3{a} libmagic-mgc{a} libmagic1t64{a} libnsl2{a} libpipeline1{a} libpython3-all-dev{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libpython3.13{a} libpython3.13-dev{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} python3{a} python3-all{a} python3-all-dev{a} python3-autocommand{a} python3-dev{a} python3-inflect{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-setuptools{a} python3-typeguard{a} python3-typing-extensions{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} python3.13{a} python3.13-dev{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl javascript-common krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 94 newly installed, 0 to remove and 0 not upgraded. Need to get 63.2 MB of archives. After unpacking 391 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.8-5 [810 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.8-5 [1934 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.8-1 [26.9 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-6 [257 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.6-1 [20.9 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.2-1 [23.9 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 13 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.8-5 [1904 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.8-5 [677 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.8-1 [9788 B] Get: 23 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.8-1 [27.9 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.1-3 [852 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.1-3 [1990 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-4 [198 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.4-1 [91.6 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-5 [284 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-4 [723 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.23 [90.6 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-2 [539 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 47 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-1 [449 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-6 [9239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-4 [1532 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.23 [919 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 75.6.0-1 [222 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 75.6.0-1 [720 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250108 [113 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-4 [98.7 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-4 [10.6 MB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83.0 arm64 1.83.0-4 [309 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libpython3.12t64 arm64 3.12.8-5 [1985 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libpython3.12-dev arm64 3.12.8-5 [4822 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libpython3-dev arm64 3.12.8-1 [10.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3.12-dev arm64 3.12.8-5 [506 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjs-sphinxdoc all 8.1.3-4 [30.4 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-dev arm64 3.12.8-1 [26.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libboost-python1.83-dev arm64 1.83.0-4 [323 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libboost-python-dev arm64 1.83.0.2+b2 [3880 B] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-12 [361 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-4 [1812 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libfreecontact0t64 arm64 1.0.21-14 [74.6 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libfreecontact-dev arm64 1.0.21-14 [85.6 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.1-3 [1912 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libpython3.13 arm64 3.13.1-3 [1971 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpython3.13-dev arm64 3.13.1-3 [4710 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpython3-all-dev arm64 3.12.8-1 [1068 B] Get: 91 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.1-3 [740 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.8-1 [1068 B] Fetched 63.2 MB in 0s (192 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.8-5_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.8-5) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.8-5_arm64.deb ... Unpacking python3.12-minimal (3.12.8-5) ... Setting up libpython3.12-minimal:arm64 (3.12.8-5) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.8-5) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20290 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.8-1_arm64.deb ... Unpacking python3-minimal (3.12.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-6_all.deb ... Unpacking tzdata (2024b-6) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../04-libffi8_3.4.6-1_arm64.deb ... Unpacking libffi8:arm64 (3.4.6-1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../05-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../06-libcom-err2_1.47.2-1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../07-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../08-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../09-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../10-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../11-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../12-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../13-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../14-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../15-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../16-libpython3.12-stdlib_3.12.8-5_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.8-5) ... Selecting previously unselected package python3.12. Preparing to unpack .../17-python3.12_3.12.8-5_arm64.deb ... Unpacking python3.12 (3.12.8-5) ... 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Universal Time is now: Mon Jan 20 10:17:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... Setting up autotools-dev (20220109.1) ... Setting up libblas3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up libunistring5:arm64 (1.3-1) ... Setting up autopoint (0.22.5-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libgfortran5:arm64 (14.2.0-12) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.4.6-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up python3.13-minimal (3.13.1-3) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up liblapack3:arm64 (3.12.0-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up gettext (0.22.5-4) ... Setting up libtool (2.5.4-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (8.1.3-4) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libfreecontact0t64:arm64 (1.0.21-14) ... Setting up groff-base (1.23.0-7) ... Setting up libpython3.13-stdlib:arm64 (3.13.1-3) ... Setting up libpython3.13:arm64 (3.13.1-3) ... Setting up libfreecontact-dev:arm64 (1.0.21-14) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up python3.13 (3.13.1-3) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpython3.13-dev:arm64 (3.13.1-3) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.8-5) ... Setting up python3.13-dev (3.13.1-3) ... Setting up python3.12 (3.12.8-5) ... Setting up debhelper (13.23) ... Setting up libpython3.12t64:arm64 (3.12.8-5) ... Setting up libpython3-stdlib:arm64 (3.12.8-1) ... Setting up python3 (3.12.8-1) ... Setting up libpython3.12-dev:arm64 (3.12.8-5) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3.12-dev (3.12.8-5) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up libpython3-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-all (3.12.8-1) ... Setting up python3-inflect (7.3.1-2) ... Setting up libpython3-all-dev:arm64 (3.12.8-1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-dev (3.12.8-1) ... Setting up libboost-python1.83-dev (1.83.0-4) ... Setting up python3-pkg-resources (75.6.0-1) ... Setting up python3-all-dev (3.12.8-1) ... Setting up python3-setuptools (75.6.0-1) ... Setting up libboost-python-dev (1.83.0.2+b2) ... Setting up dh-python (6.20250108) ... Processing triggers for libc-bin (2.40-5) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_clean: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --clean -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it I: pybuild base:311: python3.12 setup.py clean 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.12' does not exist -- can't clean it rm -rf .pybuild/ find . -name \*.pyc -exec rm {} \; dh_autoreconf_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_clean -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/python3-freecontact.substvars debian/files rm -fr -- debian/python3-freecontact/ debian/tmp/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary --with python3 --buildsystem=pybuild --builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_update_autotools_config -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_autoreconf -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_configure: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --configure -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 setup.py config I: pybuild base:311: python3.12 setup.py config dh_auto_build -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_auto_build: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --build -i python{version} -p "3.13 3.12" I: pybuild base:311: /usr/bin/python3.13 setup.py build I: pybuild base:311: /usr/bin/python3 setup.py build debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/python-freecontact-1.1' PYBUILD_SYSTEM=custom \ PYBUILD_TEST_ARGS="{interpreter} /build/reproducible-path/python-freecontact-1.1/test/test01.py" \ dh_auto_test dh_auto_test: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --test -i python{version} -p "3.13 3.12" I: pybuild base:311: python3.13 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.006104 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.07687 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.30957 secs, inverted matrix (incl LUf) in 11.0539 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 11.2204 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004541 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.083703 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 5.38041 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.086151 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.30588 secs, inverted matrix (incl LUf) in 11.1107 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 30.058s OK I: pybuild base:311: python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 seq weight loop for 1000 seqs took 0.004554 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.086239 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.29818 secs, inverted matrix (incl LUf) in 11.1551 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 all done in 11.3305 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 seq weight loop for 1000 seqs took 0.004549 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.082834 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) cov matrix Cholesky... not positive definite, dmean dev: 0.0457782 cov matrix Cholesky... not positive definite, dmean dev: 0.0412004 cov matrix Cholesky... not positive definite, dmean dev: 0.0370804 cov matrix Cholesky... not positive definite, dmean dev: 0.0333723 cov matrix Cholesky... not positive definite, dmean dev: 0.0300351 cov matrix Cholesky... not positive definite, dmean dev: 0.0270316 cov matrix Cholesky... not positive definite, dmean dev: 0.0243284 cov matrix Cholesky... not positive definite, dmean dev: 0.0218956 cov matrix Cholesky... not positive definite, dmean dev: 0.019706 cov matrix Cholesky... not positive definite, dmean dev: 0.0177354 cov matrix Cholesky... not positive definite, dmean dev: 0.0159619 cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... shrank covariance matrix in 5.26363 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 calculated pair frequency table in 0.081641 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) LU factorization took 3.30027 secs, inverted matrix (incl LUf) in 13.0421 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- Ran 3 tests in 31.979s OK rm -fr -- /tmp/dh-xdg-rundir-dTX1Y6na make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_prep -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f -- debian/python3-freecontact.substvars rm -fr -- debian/.debhelper/generated/python3-freecontact/ debian/python3-freecontact/ debian/tmp/ dh_auto_install --destdir=debian/python3-freecontact/ -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact dh_auto_install: warning: warning: pybuild does not support building out of source tree. In source building enforced. pybuild --install -i python{version} -p "3.13 3.12" --dest-dir=/build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact I: pybuild base:311: /usr/bin/python3.13 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/python-freecontact-1.1/debian/python3-freecontact /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() dh_installdocs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/copyright debian/python3-freecontact/usr/share/doc/python3-freecontact/copyright dh_installchangelogs -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact install -p -m0644 debian/.debhelper/generated/python3-freecontact/dh_installchangelogs.dch.trimmed debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog.Debian install -p -m0644 ./Changes debian/python3-freecontact/usr/share/doc/python3-freecontact/changelog dh_installexamples -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/share/doc/python3-freecontact/examples cp --reflink=auto -a ./examples/demo_1000.aln debian/python3-freecontact/usr/share/doc/python3-freecontact/examples dh_python3 -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir D: dh_python3 dh_python3:180: version: 6.20250108 D: dh_python3 dh_python3:181: argv: ['/usr/bin/dh_python3', '-O--buildsystem=pybuild', '-O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir'] D: dh_python3 dh_python3:182: options: Namespace(guess_deps=True, skip_private=False, verbose=True, arch=None, package=None, no_package=None, remaining_packages=False, compile_all=False, vrange=None, regexpr=None, accept_upstream_versions=False, depends=None, depends_section=None, recommends=None, recommends_section=None, suggests=None, suggests_section=None, requires=None, shebang=None, ignore_shebangs=False, clean_dbg_pkg=True, no_ext_rename=False, no_shebang_rewrite=False, private_dir=None, O=['--buildsystem=pybuild', '--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir']) D: dh_python3 dh_python3:183: supported Python versions: 3.12,3.13 (default=3.12) D: dh_python3 debhelper:174: source=python-freecontact, binary packages=['python3-freecontact'] D: dh_python3 dh_python3:205: processing package python3-freecontact... D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.12/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:50: moving files from debian/python3-freecontact/usr/lib/python3.13/dist-packages to debian/python3-freecontact/usr/lib/python3/dist-packages/ D: dh_python3 fs:338: package python3-freecontact details = {'requires.txt': set(), 'egg-info': {'debian/python3-freecontact/usr/lib/python3/dist-packages/python_freecontact-1.1.egg-info/PKG-INFO'}, 'dist-info': set(), 'nsp.txt': set(), 'shebangs': set(), 'public_vers': {Version('3')}, 'private_dirs': {}, 'compile': False, 'ext_vers': {Version('3.12'), Version('3.13')}, 'ext_no_version': set()} D: dh_python3 depends:103: generating dependencies for package python3-freecontact D: dh_python3 depends:253: D={'python3 (>= 3.12~)', 'python3 (<< 3.14)'}; R=[]; S=[]; E=[], B=[]; RT=[] dh_installsystemduser -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_perl -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_link -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_strip_nondeterminism -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_compress -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir cd debian/python3-freecontact chmod a-x usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian gzip -9nf usr/share/doc/python3-freecontact/changelog usr/share/doc/python3-freecontact/changelog.Debian cd '/build/reproducible-path/python-freecontact-1.1' dh_fixperms -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir find debian/python3-freecontact ! -type l -a -true -a -true -print0 2>/dev/null | xargs -0r chmod go=rX,u+rw,a-s find debian/python3-freecontact/usr/share/doc -type f -a -true -a ! -regex 'debian/python3-freecontact/usr/share/doc/[^/]*/examples/.*' -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/share/doc -type d -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0755 find debian/python3-freecontact -type f \( -name '*.so.*' -o -name '*.so' -o -name '*.la' -o -name '*.a' -o -name '*.js' -o -name '*.css' -o -name '*.scss' -o -name '*.sass' -o -name '*.jpeg' -o -name '*.jpg' -o -name '*.png' -o -name '*.gif' -o -name '*.cmxs' -o -name '*.node' \) -a -true -a -true -print0 2>/dev/null | xargs -0r chmod 0644 find debian/python3-freecontact/usr/lib -type f -name '*.ali' -a -true -a -true -print0 2>/dev/null | xargs -0r chmod uga-w dh_missing -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dh_dwz -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu dwz -mdebian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -M/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug -- debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --compress-debug-sections debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug chmod 0644 -- debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-freecontact/usr/lib/debug/.dwz rmdir -p --ignore-fail-on-non-empty debian/python3-freecontact/usr/lib/debug install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc ln -s python3-freecontact debian/.debhelper/python3-freecontact/dbgsym-root/usr/share/doc/python3-freecontact-dbgsym install -m0755 -d debian/.debhelper/python3-freecontact dh_makeshlibs -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN dh_gencontrol -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN echo misc:Depends= >> debian/python3-freecontact.substvars echo misc:Pre-Depends= >> debian/python3-freecontact.substvars install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/.debhelper/python3-freecontact/dbgsym-root -UPre-Depends -URecommends -USuggests -UEnhances -UProvides -UEssential -UConflicts -DPriority=optional -UHomepage -UImportant -DAuto-Built-Package=debug-symbols -UProtected -UBuilt-Using -UStatic-Built-Using -DPackage=python3-freecontact-dbgsym "-DDepends=python3-freecontact (= \${binary:Version})" "-DDescription=debug symbols for python3-freecontact" "-DBuild-Ids=46241dbab10dca8ef7e6f826ae8757ea4ce2333f e28bba8ff9bc3520a2aa53236848725c4db40fdd" -DSection=debug -UMulti-Arch -UReplaces -UBreaks chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/control dpkg-gencontrol -ppython3-freecontact -ldebian/changelog -Tdebian/python3-freecontact.substvars -cdebian/control -Pdebian/python3-freecontact chmod 0644 -- debian/python3-freecontact/DEBIAN/control dh_md5sums -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN cd debian/python3-freecontact >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/python3-freecontact/DEBIAN/md5sums install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-9_arm64.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-9_arm64.buildinfo dpkg-genchanges --build=binary -O../python-freecontact_1.1-9_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1080217 and its subdirectories I: Current time: Tue Jan 21 00:19:11 +14 2025 I: pbuilder-time-stamp: 1737368351 + false + set +x Mon Jan 20 10:19:11 UTC 2025 I: Signing ./b2/python-freecontact_1.1-9_arm64.buildinfo as python-freecontact_1.1-9_arm64.buildinfo.asc Mon Jan 20 10:19:11 UTC 2025 I: Signed ./b2/python-freecontact_1.1-9_arm64.buildinfo as ./b2/python-freecontact_1.1-9_arm64.buildinfo.asc Mon Jan 20 10:19:11 UTC 2025 - build #2 for python-freecontact/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Mon Jan 20 10:19:11 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-wSPJApd9, removing. /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI: total 84 drwxr-xr-x 2 jenkins jenkins 4096 Jan 20 10:17 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jan 20 10:19 b2 -rw-r--r-- 1 jenkins jenkins 1638 Jan 14 13:34 python-freecontact_1.1-9.dsc -rw------- 1 jenkins jenkins 68535 Jan 20 10:17 rbuildlog.u9uZKoo /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1: total 840 -rw-r--r-- 1 jenkins jenkins 65423 Jan 20 10:17 build.log -rw-r--r-- 1 jenkins jenkins 4504 Jan 20 10:17 python-freecontact_1.1-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1638 Jan 20 10:17 python-freecontact_1.1-9.dsc -rw-r--r-- 1 jenkins jenkins 7141 Jan 20 10:17 python-freecontact_1.1-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8023 Jan 20 10:17 python-freecontact_1.1-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1545 Jan 20 10:17 python-freecontact_1.1-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 1361 Jan 20 10:17 python-freecontact_1.1-9_source.changes -rw-r--r-- 1 jenkins jenkins 665848 Jan 20 10:17 python3-freecontact-dbgsym_1.1-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 74388 Jan 20 10:17 python3-freecontact_1.1-9_arm64.deb /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2: total 832 -rw-r--r-- 1 jenkins jenkins 67344 Jan 20 10:19 build.log -rw-r--r-- 1 jenkins jenkins 4504 Jan 20 10:19 python-freecontact_1.1-9.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1638 Jan 20 10:19 python-freecontact_1.1-9.dsc -rw-r--r-- 1 jenkins jenkins 7141 Jan 20 10:19 python-freecontact_1.1-9_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8023 Jan 20 10:19 python-freecontact_1.1-9_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1545 Jan 20 10:19 python-freecontact_1.1-9_arm64.changes -rw-r--r-- 1 jenkins jenkins 1361 Jan 20 10:19 python-freecontact_1.1-9_source.changes -rw-r--r-- 1 jenkins jenkins 665848 Jan 20 10:19 python3-freecontact-dbgsym_1.1-9_arm64.deb -rw-r--r-- 1 jenkins jenkins 74388 Jan 20 10:19 python3-freecontact_1.1-9_arm64.deb Mon Jan 20 10:19:12 UTC 2025 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Mon Jan 20 10:19:13 UTC 2025 I: python-freecontact_1.1-9_arm64.changes: Format: 1.8 Date: Tue, 14 Jan 2025 18:45:20 +0530 Source: python-freecontact Binary: python3-freecontact python3-freecontact-dbgsym Architecture: arm64 Version: 1.1-9 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: python3-freecontact - fast protein contact predictor - binding for Python3 Closes: 1092510 Changes: python-freecontact (1.1-9) unstable; urgency=medium . * Team Upload. * Link against correct libboost as per python interpreter version (Closes: #1092510) Checksums-Sha1: 17fa8884a6a86bbfbf329aebc0e3f25192fd3e6d 7141 python-freecontact_1.1-9_arm64.buildinfo 6f5de99ef873e1302efbf0d0de32fb519698e454 665848 python3-freecontact-dbgsym_1.1-9_arm64.deb 27e3aa6c042c0cfdf52d9f8d711081114e9e76dd 74388 python3-freecontact_1.1-9_arm64.deb Checksums-Sha256: a323c0390f7baff23cc20f4a73a9235449e554d3d409d55c993e616888b0ce5f 7141 python-freecontact_1.1-9_arm64.buildinfo ed1c8da41f17bb49e5ec045fe86a641863d64b042d156217d0a65f5928ad7f47 665848 python3-freecontact-dbgsym_1.1-9_arm64.deb 6c00d2a3bb8f32ded4a4170cf204d31d9d687aaeb5a46618e4c74435bcbea8b3 74388 python3-freecontact_1.1-9_arm64.deb Files: 258c062c5c01401399078459e887c593 7141 python optional python-freecontact_1.1-9_arm64.buildinfo 2d71a017d99497d6a678097e2d7b26e5 665848 debug optional python3-freecontact-dbgsym_1.1-9_arm64.deb 23732a215585f626b24f98c99370d5c4 74388 python optional python3-freecontact_1.1-9_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-freecontact_1.1-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-freecontact_1.1-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-freecontact_1.1-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/python-freecontact_1.1-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/python-freecontact_1.1-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-freecontact_1.1-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-01-20 10:17:02.597786862 +0000 +++ b2/build.log 2025-01-20 10:19:12.135972848 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Sun Feb 22 04:37:26 -12 2026 -I: pbuilder-time-stamp: 1771778246 +I: Current time: Tue Jan 21 00:17:05 +14 2025 +I: pbuilder-time-stamp: 1737368225 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: applying fix_boost_linkage.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jan 20 10:17 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='b5f85b0896444c919734dfbbf29938fe' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1788724' - PS1='# ' - PS2='> ' + INVOCATION_ID=67ff59c2aacb424eb04a021ea92bfe05 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1080217 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_kQsO --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1 --logfile b1/build.log python-freecontact_1.1-9.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/pbuilderrc_XeJh --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2 --logfile b2/build.log python-freecontact_1.1-9.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-30-cloud-arm64 #1 SMP Debian 6.1.124-1 (2025-01-12) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Nov 22 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1788724/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Nov 22 14:40 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -210,7 +242,7 @@ Get: 92 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.12.8-1 [1048 B] Get: 93 http://deb.debian.org/debian trixie/main arm64 python3.13-dev arm64 3.13.1-3 [504 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 python3-all-dev arm64 3.12.8-1 [1068 B] -Fetched 63.2 MB in 1s (105 MB/s) +Fetched 63.2 MB in 0s (192 MB/s) Preconfiguring packages ... Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19970 files and directories currently installed.) @@ -528,8 +560,8 @@ Setting up tzdata (2024b-6) ... Current default time zone: 'Etc/UTC' -Local time is now: Sun Feb 22 16:38:02 UTC 2026. -Universal Time is now: Sun Feb 22 16:38:02 UTC 2026. +Local time is now: Mon Jan 20 10:17:28 UTC 2025. +Universal Time is now: Mon Jan 20 10:17:28 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libpython3.13-minimal:arm64 (3.13.1-3) ... @@ -617,7 +649,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/python-freecontact-1.1/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../python-freecontact_1.1-9_source.changes dpkg-buildpackage: info: source package python-freecontact dpkg-buildpackage: info: source version 1.1-9 dpkg-buildpackage: info: source distribution unstable @@ -676,26 +712,26 @@ ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.004638 secs +seq weight loop for 1000 seqs took 0.006104 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.081513 secs +calculated pair frequency table in 0.07687 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 3.55485 secs, inverted matrix (incl LUf) in 12.1751 secs +LU factorization took 3.30957 secs, inverted matrix (incl LUf) in 11.0539 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 -all done in 12.3498 secs +all done in 11.2204 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.00492 secs +seq weight loop for 1000 seqs took 0.004541 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.088246 secs +calculated pair frequency table in 0.083703 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -713,50 +749,50 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 5.59158 secs +shrank covariance matrix in 5.38041 secs will try rho 0.00178064, exact solution - iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads + iteration = 1 iteration = 2 iteration = 3 iteration = 4will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.155394 secs +calculated pair frequency table in 0.086151 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 3.55296 secs, inverted matrix (incl LUf) in 11.6854 secs +LU factorization took 3.30588 secs, inverted matrix (incl LUf) in 11.1107 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- -Ran 3 tests in 32.349s +Ran 3 tests in 30.058s OK I: pybuild base:311: python3.12 /build/reproducible-path/python-freecontact-1.1/test/test01.py ..will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 -seq weight loop for 1000 seqs took 0.004578 secs +seq weight loop for 1000 seqs took 0.004554 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.088152 secs +calculated pair frequency table in 0.086239 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 3.4846 secs, inverted matrix (incl LUf) in 12.3296 secs +LU factorization took 3.29818 secs, inverted matrix (incl LUf) in 11.1551 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 -all done in 12.5232 secs +all done in 11.3305 secs will use 1 OMP threads total weight (variation) of alignment = 561.595172234625 -seq weight loop for 1000 seqs took 0.004973 secs +seq weight loop for 1000 seqs took 0.004549 secs will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.077725 secs +calculated pair frequency table in 0.082834 secs collected apc_mean[MI] = 0.165528914074767 aa freq sum (cell) = 0.999993945475299, pairfreq sum (cell) = 0.999988196197513 formed covariance matrix (126/126,4) @@ -774,27 +810,27 @@ cov matrix Cholesky... not positive definite, dmean dev: 0.0143657 cov matrix Cholesky... not positive definite, dmean dev: 0.0129291 cov matrix Cholesky... -shrank covariance matrix in 6.08605 secs +shrank covariance matrix in 5.26363 secs will try rho 0.00178064, exact solution  iteration = 1 iteration = 2 iteration = 3 iteration = 4 iteration = 5will use 1 OMP threads total weight (variation) of alignment = 620.777515304633 will use 1 OMP threads calculated column aa frequencies, gap cols = 4 -calculated pair frequency table in 0.090285 secs +calculated pair frequency table in 0.081641 secs collected apc_mean[MI] = 0.174031486973761 aa freq sum (cell) = 0.999997158936351, pairfreq sum (cell) = 0.999994420985606 formed covariance matrix (122/126,4) -LU factorization took 4.52525 secs, inverted matrix (incl LUf) in 16.444 secs +LU factorization took 3.30027 secs, inverted matrix (incl LUf) in 13.0421 secs density of inverse covariance matrix = 1 (cksum 346842.2) went back to gapped (126) wwi matrix collected apc_mean[l1norm] = 117.987034975652 collected apc_mean[fro] = 3.35437753102448 . ---------------------------------------------------------------------- -Ran 3 tests in 37.568s +Ran 3 tests in 31.979s OK - rm -fr -- /tmp/dh-xdg-rundir-YACEi4A0 + rm -fr -- /tmp/dh-xdg-rundir-dTX1Y6na make[1]: Leaving directory '/build/reproducible-path/python-freecontact-1.1' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir @@ -877,16 +913,16 @@ objcopy --compress-debug-sections debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug chmod 0644 -- debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu/python3-freecontact.debug dh_strip -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir - install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2 - objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug - chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug - strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so - objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46 objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/46/241dbab10dca8ef7e6f826ae8757ea4ce2333f.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so + install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2 + objcopy --only-keep-debug --compress-debug-sections debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug + chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug + strip --remove-section=.comment --remove-section=.note --strip-unneeded debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so + objcopy --add-gnu-debuglink debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.build-id/e2/8bba8ff9bc3520a2aa53236848725c4db40fdd.debug debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so install -m0755 -d debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz cp --reflink=auto -a debian/python3-freecontact/usr/lib/debug/.dwz/aarch64-linux-gnu debian/.debhelper/python3-freecontact/dbgsym-root/usr/lib/debug/.dwz rm -fr debian/python3-freecontact/usr/lib/debug/.dwz @@ -898,7 +934,7 @@ rm -f debian/python3-freecontact/DEBIAN/shlibs dh_shlibdeps -a -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir install -m0755 -d debian/python3-freecontact/DEBIAN - dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so + dpkg-shlibdeps -Tdebian/python3-freecontact.substvars debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-313-aarch64-linux-gnu.so debian/python3-freecontact/usr/lib/python3/dist-packages/freecontact.cpython-312-aarch64-linux-gnu.so dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect @@ -922,8 +958,8 @@ cd debian/.debhelper/python3-freecontact/dbgsym-root >/dev/null && xargs -r0 md5sum | perl -pe 'if (s@^\\@@) { s/\\\\/\\/g; }' > DEBIAN/md5sums chmod 0644 -- debian/.debhelper/python3-freecontact/dbgsym-root/DEBIAN/md5sums dh_builddeb -O--buildsystem=pybuild -O--builddirectory=/build/reproducible-path/python-freecontact-1.1/builddir - dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb --root-owner-group --build debian/.debhelper/python3-freecontact/dbgsym-root .. + dpkg-deb --root-owner-group --build debian/python3-freecontact .. dpkg-deb: building package 'python3-freecontact' in '../python3-freecontact_1.1-9_arm64.deb'. dpkg-deb: building package 'python3-freecontact-dbgsym' in '../python3-freecontact-dbgsym_1.1-9_arm64.deb'. dpkg-genbuildinfo --build=binary -O../python-freecontact_1.1-9_arm64.buildinfo @@ -933,12 +969,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1080217/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1788724 and its subdirectories -I: Current time: Sun Feb 22 04:40:00 -12 2026 -I: pbuilder-time-stamp: 1771778400 +I: removing directory /srv/workspace/pbuilder/1080217 and its subdirectories +I: Current time: Tue Jan 21 00:19:11 +14 2025 +I: pbuilder-time-stamp: 1737368351 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-freecontact_1.1-9.diff: 76.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/python-freecontact_1.1-9.diff.gz b2/build.log: 81.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 82.2% -- replaced with stdout Mon Jan 20 10:19:14 UTC 2025 I: diffoscope 285 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_python-freecontact_trixie_arm64_1737368354 + touch /var/log/reproducible-builds/diffoscope_stamp_python-freecontact_trixie_arm64_1737368354 + RESULT=0 + systemd-run '--description=diffoscope on python-freecontact/1.1-9 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_21-49383 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI --run-session -c jenkins-reproducible-trixie-diffoscope-5aa1c128-dbbd-425d-baf6-efdfbe9e511a -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/dbd-tmp-eOnp61m ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1/python-freecontact_1.1-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2/python-freecontact_1.1-9_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_21-49383.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/python-freecontact_1.1-9.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b1/python-freecontact_1.1-9_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.R2vL6PSI/b2/python-freecontact_1.1-9_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.340s) 0.340s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.021s) 0.021s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 649ms CPU time consumed: 649ms _ _ __ _ _ __ _ _| |_| |__ ___ _ __ / _|_ __ ___ ___ ___ ___ _ __ | |_ | '_ \| | | | __| '_ \ / _ \| '_ \ _____| |_| '__/ _ \/ _ \/ __/ _ \| '_ \| __| | |_) | |_| | |_| | | | (_) | | | |_____| _| | | __/ __/ (_| (_) | | | | |_ | .__/ \__, |\__|_| |_|\___/|_| |_| |_| |_| \___|\___|\___\___/|_| |_|\__| |_| |___/ _ __ _ ___| |_ / _` |/ __| __| | (_| | (__| |_ \__,_|\___|\__| Mon Jan 20 10:19:15 UTC 2025 I: diffoscope 285 found no differences in the changes files, and a .buildinfo file also exists. Mon Jan 20 10:19:15 UTC 2025 I: python-freecontact from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-01-20 10:19:15] INFO: Starting at 2025-01-20 10:19:15.805790 [2025-01-20 10:19:15] INFO: Generating the pages of 1 package(s) [2025-01-20 10:19:16] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/python-freecontact didn't produce a buildlog, even though it has been built. [2025-01-20 10:19:16] INFO: Finished at 2025-01-20 10:19:16.264496, took: 0:00:00.458713 Mon Jan 20 10:19:16 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/python-freecontact.html Mon Jan 20 10:19:16 UTC 2025 I: Submitting .buildinfo files to external archives: Mon Jan 20 10:19:16 UTC 2025 I: Submitting 8.0K b1/python-freecontact_1.1-9_arm64.buildinfo.asc https://buildinfo.debian.net/17fa8884a6a86bbfbf329aebc0e3f25192fd3e6d/python-freecontact_1.1-9_arm64 Mon Jan 20 10:19:17 UTC 2025 I: Submitting 8.0K b2/python-freecontact_1.1-9_arm64.buildinfo.asc https://buildinfo.debian.net/5dc6663acd883ea0dae26a214bb490fc2d1e0461/python-freecontact_1.1-9_arm64 Mon Jan 20 10:19:17 UTC 2025 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Mon Jan 20 10:19:17 UTC 2025 I: Done submitting .buildinfo files. Mon Jan 20 10:19:18 UTC 2025 I: Removing signed python-freecontact_1.1-9_arm64.buildinfo.asc files: removed './b1/python-freecontact_1.1-9_arm64.buildinfo.asc' removed './b2/python-freecontact_1.1-9_arm64.buildinfo.asc' 1737368358 arm64 trixie python-freecontact Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-freecontact_1.1-9.rbuild.log: 80.6% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/python-freecontact_1.1-9.rbuild.log.gz [2025-01-20 10:19:18] INFO: Starting at 2025-01-20 10:19:18.358249 [2025-01-20 10:19:18] INFO: Generating the pages of 1 package(s) [2025-01-20 10:19:18] INFO: Finished at 2025-01-20 10:19:18.856431, took: 0:00:00.498190 All cleanup done. Mon Jan 20 10:19:18 UTC 2025 - total duration: 0h 4m 59s. Mon Jan 20 10:19:18 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Rka97JfH, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 5min 2.246s CPU time consumed: 7.637s