Running as unit: rb-build-arm64_22-40349.service ==================================================================================== Thu Nov 21 05:12:05 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_22) on jenkins, called using "codethink04-arm64 codethink02-arm64" as arguments. Thu Nov 21 05:12:05 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-s6uma27H" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 05:12:05 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Nov 21 05:12:05 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-45eOvZ' Thu Nov 21 05:12:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Nov 21 05:12:06 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-rzn46B' ok, let's check if obitools is building anywhere yet… ok, obitools is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of obitools in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink02-arm64.debian.net. ============================================================================= Thu Nov 21 05:12:14 UTC 2024 I: starting to build obitools/unstable/arm64 on jenkins on '2024-11-21 05:12' Thu Nov 21 05:12:14 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/40349/console.log 1732165934 arm64 unstable obitools Thu Nov 21 05:12:14 UTC 2024 I: Downloading source for unstable/obitools=3.0.1~b26+dfsg-2 --2024-11-21 05:12:14-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2081 (2.0K) [text/prs.lines.tag] Saving to: ‘obitools_3.0.1~b26+dfsg-2.dsc’ 0K .. 100% 257M=0s 2024-11-21 05:12:14 (257 MB/s) - ‘obitools_3.0.1~b26+dfsg-2.dsc’ saved [2081/2081] --2024-11-21 05:12:14-- http://deb.debian.org/debian/pool/main/o/obitools/obitools_3.0.1%7eb26%2bdfsg-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2081 (2.0K) [text/prs.lines.tag] Saving to: ‘obitools_3.0.1~b26+dfsg-2.dsc’ 0K .. 100% 257M=0s 2024-11-21 05:12:14 (257 MB/s) - ‘obitools_3.0.1~b26+dfsg-2.dsc’ saved [2081/2081] Thu Nov 21 05:12:14 UTC 2024 I: obitools_3.0.1~b26+dfsg-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: obitools Binary: obitools Architecture: any Version: 3.0.1~b26+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille Homepage: https://metabarcoding.org/obitools3 Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/obitools Vcs-Git: https://salsa.debian.org/med-team/obitools.git Build-Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3, ipython3, cmake Package-List: obitools deb science optional arch=any Checksums-Sha1: 79040b3e48957ae1669e2b094fb3fc56a8d0db7b 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz e9363ea1270dd93236cc43b5203e5cb0a5ce68c4 14336 obitools_3.0.1~b26+dfsg-2.debian.tar.xz Checksums-Sha256: 6f067e22b76e4489288f7a3d13027391ecba5719de324c2ca58ec4542bc60e91 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz faa5216011e2e714e31dbc76a9b4a71403f3555acda22ed2d0562ced33a9e3f8 14336 obitools_3.0.1~b26+dfsg-2.debian.tar.xz Files: 974e65eaa6d1a2f51a7f5594b6987349 255092 obitools_3.0.1~b26+dfsg.orig.tar.xz c423831b218154eb28398c58a5a32f6d 14336 obitools_3.0.1~b26+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmc+epcACgkQPCZ2P2xn 5uIFzBAAnePSqZXIGBekq33gcDf1FPgkFBzOurp/Xx8t8wqx8PlKkq3d57zM/MVC 9WDZL9I0pOo/2bpFGxvhxwHLiUGLjhIxAcrItogm4Kv8+ROHi0bJW5qtI79r1mQ/ 6sEICPKZ4x3Qe2BIewTbHJKKLzlEiWLv/tsK1xLbCQoFvzV+V/MBnfjwJU725X5d 4z0QqPmrKRIMt6nm9s6tJcgB3/vouXiSrstoshkDsHjFTUzJQnWC++K+wYBH3W7U kA2OZ8C8WBwMdn1PGZbDFHsNnyRnmouLgV61y6sXAZQpa7Sq8dbTeitW4w15PC/L avw4OxILLSX8HZ8WXLmyfKzvw+2HLXF6/ZtWFGBwChzmGSw3O3SAGuuguFgZi8bN jGefqpCe91U91x5hxWAG/yFDFaZ/CRDG1wg/Aoy8xIZDJh8/KlV/7qzJY5sxpH9w N+ObjUxX106zcLbUNIkPwsNm9YMgRijHj1y5/yZeNWfLbJ9idENyGXCkAVy3ptAz g0Urb8adsqwFLAnfEyb5Y2sz40KyKGwrClujYko+epSZLp2Oscj7Zg8eqcp7FozC tldxIIGVaGJ5wvJHsR+ZTgMcqg/1t8KXM2rt4QiFwjoMBM28f4hzMUT54bNPDErn ansWt/AELpnc/gIgpF9K8jHeZH465bdWag0uOXjwnVGczTmHSnM= =BmHI -----END PGP SIGNATURE----- Thu Nov 21 05:12:14 UTC 2024 I: Checking whether the package is not for us Thu Nov 21 05:12:14 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Nov 21 05:12:14 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Nov 21 05:12:14 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Nov 21 05:12:14 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-QxjbGk' ==================================================================================== Thu Nov 21 05:12:16 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 obitools unstable /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j 3.0.1~b26+dfsg-2" as arguments. Thu Nov 21 05:12:16 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ouJMn5I4" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 05:12:16 UTC 2024 I: Downloading source for unstable/obitools=3.0.1~b26+dfsg-2 Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 272 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (dsc) [2081 B] Get:2 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (tar) [255 kB] Get:3 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (diff) [14.3 kB] Fetched 272 kB in 0s (5318 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 272 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (dsc) [2081 B] Get:2 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (tar) [255 kB] Get:3 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (diff) [14.3 kB] Fetched 272 kB in 0s (5318 kB/s) Download complete and in download only mode ============================================================================= Building obitools in unstable on arm64 on codethink04-arm64 now. Date: Thu Nov 21 05:12:16 GMT 2024 Date UTC: Thu Nov 21 05:12:16 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 20 17:12:17 -12 2024 I: pbuilder-time-stamp: 1732165937 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-2.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 21 00:11:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='676d97ce0da8491f94f63aace4c041ce' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3161727' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_olLn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3, ipython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-matplotlib python3-pil wget 0 packages upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 304 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.0-1 [2265 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.0-1 [9874 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-parso all 0.8.3-1 [67.4 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-prompt-toolkit all 3.0.48-1 [277 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-asttokens all 2.4.1-2 [20.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-executing all 2.1.0-0.1 [23.9 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-pexpect all 4.9-3 [55.6 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-ipython all 8.29.0-1 [567 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 ipython3 all 8.29.0-1 [36.9 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-babel all 2.16.0-1 [114 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-roman all 4.2-1 [10.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 7.4.7-4 [731 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 7.4.7-4 [588 kB] Fetched 68.3 MB in 1s (84.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21466 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../014-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.31.0-1_all.deb ... Unpacking cmake-data (3.31.0-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../022-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../023-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../024-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../025-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../026-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../027-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../028-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../029-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../030-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../032-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../033-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../034-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../035-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../036-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.31.0-1_arm64.deb ... Unpacking cmake (3.31.0-1) ... Selecting previously unselected package cython3. Preparing to unpack .../038-cython3_3.0.11+dfsg-1+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../039-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../040-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../041-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../042-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../045-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../051-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../052-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../053-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../054-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../055-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../056-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../057-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../058-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../059-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../060-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../061-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../062-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package xml-core. Preparing to unpack .../063-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../065-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-parso. Preparing to unpack .../066-python3-parso_0.8.3-1_all.deb ... Unpacking python3-parso (0.8.3-1) ... Selecting previously unselected package python3-typeshed. Preparing to unpack .../067-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../068-python3-jedi_0.19.1+ds1-1_all.deb ... Unpacking python3-jedi (0.19.1+ds1-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../069-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... Selecting previously unselected package python3-matplotlib-inline. Preparing to unpack .../070-python3-matplotlib-inline_0.1.6-2_all.deb ... Unpacking python3-matplotlib-inline (0.1.6-2) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../071-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... Selecting previously unselected package python3-prompt-toolkit. Preparing to unpack .../072-python3-prompt-toolkit_3.0.48-1_all.deb ... Unpacking python3-prompt-toolkit (3.0.48-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../073-python3-pygments_2.18.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-1) ... Selecting previously unselected package python3-asttokens. Preparing to unpack .../074-python3-asttokens_2.4.1-2_all.deb ... Unpacking python3-asttokens (2.4.1-2) ... Selecting previously unselected package python3-executing. Preparing to unpack .../075-python3-executing_2.1.0-0.1_all.deb ... Unpacking python3-executing (2.1.0-0.1) ... Selecting previously unselected package python3-pure-eval. Preparing to unpack .../076-python3-pure-eval_0.2.3-1_all.deb ... Unpacking python3-pure-eval (0.2.3-1) ... Selecting previously unselected package python3-stack-data. Preparing to unpack .../077-python3-stack-data_0.6.3-1_all.deb ... Unpacking python3-stack-data (0.6.3-1) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../078-python3-ptyprocess_0.7.0-6_all.deb ... Unpacking python3-ptyprocess (0.7.0-6) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../079-python3-pexpect_4.9-3_all.deb ... Unpacking python3-pexpect (4.9-3) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../080-python3-ipython_8.29.0-1_all.deb ... Unpacking python3-ipython (8.29.0-1) ... Selecting previously unselected package ipython3. Preparing to unpack .../081-ipython3_8.29.0-1_all.deb ... Unpacking ipython3 (8.29.0-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../082-libexpat1-dev_2.6.4-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.4-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../084-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../085-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../086-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../087-libpython3.12t64_3.12.7-3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.7-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../088-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../089-libpython3.12-dev_3.12.7-3_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../090-libpython3-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.7-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../091-python-babel-localedata_2.16.0-1_all.deb ... Unpacking python-babel-localedata (2.16.0-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../092-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../093-python3-babel_2.16.0-1_all.deb ... Unpacking python3-babel (2.16.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../094-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../095-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../096-python3-charset-normalizer_3.4.0-1+b1_arm64.deb ... Unpacking python3-charset-normalizer (3.4.0-1+b1) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../097-python3-defusedxml_0.7.1-2_all.deb ... Unpacking python3-defusedxml (0.7.1-2) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../098-python3.12-dev_3.12.7-3_arm64.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../099-python3-dev_3.12.7-1_arm64.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../100-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../101-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../102-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../103-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../104-python3-markupsafe_2.1.5-1+b3_arm64.deb ... Unpacking python3-markupsafe (2.1.5-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../105-python3-jinja2_3.1.3-1_all.deb ... Unpacking python3-jinja2 (3.1.3-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../106-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../107-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../108-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../109-python3-snowballstemmer_2.2.0-4_all.deb ... Unpacking python3-snowballstemmer (2.2.0-4) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../110-sphinx-common_7.4.7-4_all.deb ... Unpacking sphinx-common (7.4.7-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../111-python3-sphinx_7.4.7-4_all.deb ... Unpacking python3-sphinx (7.4.7-4) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.16.0-1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 21 05:13:03 UTC 2024. Universal Time is now: Thu Nov 21 05:13:03 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.31.0-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.4.7-4) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up cmake (3.31.0-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up python3-prompt-toolkit (3.0.48-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-executing (2.1.0-0.1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-ipython (8.29.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up ipython3 (8.29.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-2_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/writers/tab.pyx because it changed. Compiling python/obitools3/writers/fastq.pyx because it changed. Compiling python/obitools3/writers/fasta.pyx because it changed. Compiling python/obitools3/uri/decode.pyx because it changed. Compiling python/obitools3/parsers/universal.pyx because it changed. Compiling python/obitools3/parsers/tab.pyx because it changed. Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. Compiling python/obitools3/parsers/header.pyx because it changed. Compiling python/obitools3/parsers/genbank.pyx because it changed. Compiling python/obitools3/parsers/fastq.pyx because it changed. Compiling python/obitools3/parsers/fasta.pyx because it changed. Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. Compiling python/obitools3/parsers/embl.pyx because it changed. Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. Compiling python/obitools3/libalign/_rassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. Compiling python/obitools3/libalign/_nws.pyx because it changed. Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. Compiling python/obitools3/libalign/_dynamic.pyx because it changed. Compiling python/obitools3/libalign/_assemble.pyx because it changed. Compiling python/obitools3/format/tab.pyx because it changed. Compiling python/obitools3/format/header.pyx because it changed. Compiling python/obitools3/format/fastq.pyx because it changed. Compiling python/obitools3/format/fasta.pyx because it changed. Compiling python/obitools3/files/universalopener.pyx because it changed. Compiling python/obitools3/files/uncompress.pyx because it changed. Compiling python/obitools3/files/linebuffer.pyx because it changed. Compiling python/obitools3/dms/object.pyx because it changed. Compiling python/obitools3/dms/obiseq.pyx because it changed. Compiling python/obitools3/dms/dms.pyx because it changed. Compiling python/obitools3/dms/view/view.pyx because it changed. Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. Compiling python/obitools3/dms/column/column_idx.pyx because it changed. Compiling python/obitools3/dms/column/column.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. Compiling python/obitools3/commands/uniq.pyx because it changed. Compiling python/obitools3/commands/test.pyx because it changed. Compiling python/obitools3/commands/taxonomy.pyx because it changed. Compiling python/obitools3/commands/tail.pyx because it changed. Compiling python/obitools3/commands/stats.pyx because it changed. Compiling python/obitools3/commands/split.pyx because it changed. Compiling python/obitools3/commands/sort.pyx because it changed. Compiling python/obitools3/commands/rm.pyx because it changed. Compiling python/obitools3/commands/ngsfilter.pyx because it changed. Compiling python/obitools3/commands/ls.pyx because it changed. Compiling python/obitools3/commands/less.pyx because it changed. Compiling python/obitools3/commands/import.pyx because it changed. Compiling python/obitools3/commands/history.pyx because it changed. Compiling python/obitools3/commands/head.pyx because it changed. Compiling python/obitools3/commands/grep.pyx because it changed. Compiling python/obitools3/commands/export.pyx because it changed. Compiling python/obitools3/commands/ecotag.pyx because it changed. Compiling python/obitools3/commands/ecopcr.pyx because it changed. Compiling python/obitools3/commands/count.pyx because it changed. Compiling python/obitools3/commands/clean_dms.pyx because it changed. Compiling python/obitools3/commands/clean.pyx because it changed. Compiling python/obitools3/commands/cat.pyx because it changed. Compiling python/obitools3/commands/build_ref_db.pyx because it changed. Compiling python/obitools3/commands/annotate.pyx because it changed. Compiling python/obitools3/commands/alignpairedend.pyx because it changed. Compiling python/obitools3/commands/align.pyx because it changed. Compiling python/obitools3/commands/addtaxids.pyx because it changed. Compiling python/obitools3/apps/temp.pyx because it changed. Compiling python/obitools3/apps/progress.pyx because it changed. Compiling python/obitools3/apps/logging.pyx because it changed. Compiling python/obitools3/apps/config.pyx because it changed. Compiling python/obitools3/apps/command.pyx because it changed. Compiling python/obitools3/apps/arguments.pyx because it changed. [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx [ 2/80] Cythonizing python/obitools3/apps/command.pyx [ 3/80] Cythonizing python/obitools3/apps/config.pyx [ 4/80] Cythonizing python/obitools3/apps/logging.pyx [ 5/80] Cythonizing python/obitools3/apps/progress.pyx [ 6/80] Cythonizing python/obitools3/apps/temp.pyx [ 7/80] Cythonizing python/obitools3/commands/addtaxids.pyx [ 8/80] Cythonizing python/obitools3/commands/align.pyx [ 9/80] Cythonizing python/obitools3/commands/alignpairedend.pyx [10/80] Cythonizing python/obitools3/commands/annotate.pyx [11/80] Cythonizing python/obitools3/commands/build_ref_db.pyx [12/80] Cythonizing python/obitools3/commands/cat.pyx [13/80] Cythonizing python/obitools3/commands/clean.pyx [14/80] Cythonizing python/obitools3/commands/clean_dms.pyx [15/80] Cythonizing python/obitools3/commands/count.pyx [16/80] Cythonizing python/obitools3/commands/ecopcr.pyx [17/80] Cythonizing python/obitools3/commands/ecotag.pyx [18/80] Cythonizing python/obitools3/commands/export.pyx [19/80] Cythonizing python/obitools3/commands/grep.pyx [20/80] Cythonizing python/obitools3/commands/head.pyx [21/80] Cythonizing python/obitools3/commands/history.pyx [22/80] Cythonizing python/obitools3/commands/import.pyx [23/80] Cythonizing python/obitools3/commands/less.pyx [24/80] Cythonizing python/obitools3/commands/ls.pyx [25/80] Cythonizing python/obitools3/commands/ngsfilter.pyx [26/80] Cythonizing python/obitools3/commands/rm.pyx [27/80] Cythonizing python/obitools3/commands/sort.pyx [28/80] Cythonizing python/obitools3/commands/split.pyx [29/80] Cythonizing python/obitools3/commands/stats.pyx [30/80] Cythonizing python/obitools3/commands/tail.pyx [31/80] Cythonizing python/obitools3/commands/taxonomy.pyx [32/80] Cythonizing python/obitools3/commands/test.pyx [33/80] Cythonizing python/obitools3/commands/uniq.pyx [34/80] Cythonizing python/obitools3/dms/column/column.pyx [35/80] Cythonizing python/obitools3/dms/column/column_idx.pyx [36/80] Cythonizing python/obitools3/dms/column/typed_column/bool.pyx [37/80] Cythonizing python/obitools3/dms/column/typed_column/char.pyx [38/80] Cythonizing python/obitools3/dms/column/typed_column/float.pyx [39/80] Cythonizing python/obitools3/dms/column/typed_column/int.pyx [40/80] Cythonizing python/obitools3/dms/column/typed_column/qual.pyx [41/80] Cythonizing python/obitools3/dms/column/typed_column/seq.pyx [42/80] Cythonizing python/obitools3/dms/column/typed_column/str.pyx [43/80] Cythonizing python/obitools3/dms/dms.pyx [44/80] Cythonizing python/obitools3/dms/obiseq.pyx [45/80] Cythonizing python/obitools3/dms/object.pyx [46/80] Cythonizing python/obitools3/dms/taxo/taxo.pyx [47/80] Cythonizing python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx [48/80] Cythonizing python/obitools3/dms/view/view.pyx [49/80] Cythonizing python/obitools3/files/linebuffer.pyx [50/80] Cythonizing python/obitools3/files/uncompress.pyx [51/80] Cythonizing python/obitools3/files/universalopener.pyx [52/80] Cythonizing python/obitools3/format/fasta.pyx [53/80] Cythonizing python/obitools3/format/fastq.pyx [54/80] Cythonizing python/obitools3/format/header.pyx [55/80] Cythonizing python/obitools3/format/tab.pyx [56/80] Cythonizing python/obitools3/libalign/_assemble.pyx [57/80] Cythonizing python/obitools3/libalign/_dynamic.pyx [58/80] Cythonizing python/obitools3/libalign/_freeendgap.pyx [59/80] Cythonizing python/obitools3/libalign/_freeendgapfm.pyx [60/80] Cythonizing python/obitools3/libalign/_nws.pyx [61/80] Cythonizing python/obitools3/libalign/_qsassemble.pyx [62/80] Cythonizing python/obitools3/libalign/_qsrassemble.pyx [63/80] Cythonizing python/obitools3/libalign/_rassemble.pyx [64/80] Cythonizing python/obitools3/libalign/_solexapairend.pyx [65/80] Cythonizing python/obitools3/libalign/apat_pattern.pyx [66/80] Cythonizing python/obitools3/libalign/shifted_ali.pyx [67/80] Cythonizing python/obitools3/parsers/embl.pyx [68/80] Cythonizing python/obitools3/parsers/embl_genbank_features.pyx [69/80] Cythonizing python/obitools3/parsers/fasta.pyx [70/80] Cythonizing python/obitools3/parsers/fastq.pyx [71/80] Cythonizing python/obitools3/parsers/genbank.pyx [72/80] Cythonizing python/obitools3/parsers/header.pyx [73/80] Cythonizing python/obitools3/parsers/ngsfilter.pyx [74/80] Cythonizing python/obitools3/parsers/tab.pyx [75/80] Cythonizing python/obitools3/parsers/universal.pyx [76/80] Cythonizing python/obitools3/uri/decode.pyx [77/80] Cythonizing python/obitools3/utils.pyx [78/80] Cythonizing python/obitools3/writers/fasta.pyx [79/80] Cythonizing python/obitools3/writers/fastq.pyx [80/80] Cythonizing python/obitools3/writers/tab.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c" [ 9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c" [ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c" [ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c" [ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c" [ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c" [ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c" [ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c" [ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c" [ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c" [ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file,CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libcobitools3.so -o libcobitools3.so CMakeFiles/cobitools3.dir/obisig.c.o CMakeFiles/cobitools3.dir/obierrno.c.o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o CMakeFiles/cobitools3.dir/obi_lcs.c.o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o CMakeFiles/cobitools3.dir/bloom.c.o CMakeFiles/cobitools3.dir/build_reference_db.c.o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o CMakeFiles/cobitools3.dir/obi_ecotag.c.o CMakeFiles/cobitools3.dir/encode.c.o CMakeFiles/cobitools3.dir/obiavl.c.o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups running build_ext building 'obitools3.utils' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3 aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.uri.decode' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.universal' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.tab' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.genbank' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl_genbank_features' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.shifted_ali' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.apat_pattern' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._solexapairend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._rassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsrassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._nws' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgapfm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgap' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._dynamic' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._assemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/format aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.universalopener' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/files aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.uncompress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.linebuffer' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.object' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.obiseq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.view' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column_idx' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.str' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.seq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.qual' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.int' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.float' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.char' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.bool' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.uniq' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.test' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.taxonomy' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.tail' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.stats' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.split' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.sort' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.rm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ls' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.less' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.import' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.history' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.head' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.grep' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.export' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecotag' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecopcr' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.count' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean_dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.cat' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.build_ref_db' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.annotate' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.alignpairedend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.align' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.addtaxids' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.temp' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.progress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.logging' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.config' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.command' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.arguments' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 449, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 380, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild I: dh_python3 fs:421: renaming libcobitools3.so to libcobitools3.cpython-312-aarch64-linux-gnu.so dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/utils.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol log10: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3161727 and its subdirectories I: Current time: Wed Nov 20 17:31:13 -12 2024 I: pbuilder-time-stamp: 1732167073 Thu Nov 21 05:31:13 UTC 2024 I: Signing ./b1/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo as obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc Thu Nov 21 05:31:14 UTC 2024 I: Signed ./b1/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo as ./b1/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc Thu Nov 21 05:31:14 UTC 2024 - build #1 for obitools/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Nov 21 05:31:14 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ouJMn5I4, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 05:31 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 05:12 b2 -rw-r--r-- 1 jenkins jenkins 2081 Nov 21 00:13 obitools_3.0.1~b26+dfsg-2.dsc -rw------- 1 jenkins jenkins 3247 Nov 21 05:12 rbuildlog.cl1tgmO /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1: total 18468 -rw-r--r-- 1 jenkins jenkins 234213 Nov 21 05:31 build.log -rw-r--r-- 1 jenkins jenkins 16684132 Nov 21 05:31 obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 14336 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2081 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8632 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9514 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1553 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1932412 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1391 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2: total 0 Thu Nov 21 05:31:15 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Nov 20 17:12:17 -12 2024 I: pbuilder-time-stamp: 1732165937 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-2.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 21 00:11:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='676d97ce0da8491f94f63aace4c041ce' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3161727' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_olLn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3, ipython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-matplotlib python3-pil wget 0 packages upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 304 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.0-1 [2265 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.0-1 [9874 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-parso all 0.8.3-1 [67.4 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-prompt-toolkit all 3.0.48-1 [277 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-asttokens all 2.4.1-2 [20.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-executing all 2.1.0-0.1 [23.9 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-pexpect all 4.9-3 [55.6 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-ipython all 8.29.0-1 [567 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 ipython3 all 8.29.0-1 [36.9 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-babel all 2.16.0-1 [114 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-roman all 4.2-1 [10.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 7.4.7-4 [731 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 7.4.7-4 [588 kB] Fetched 68.3 MB in 1s (84.5 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21466 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../014-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.31.0-1_all.deb ... Unpacking cmake-data (3.31.0-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../022-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../023-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../024-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../025-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../026-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../027-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../028-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../029-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../030-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../032-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../033-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../034-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../035-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../036-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.31.0-1_arm64.deb ... Unpacking cmake (3.31.0-1) ... Selecting previously unselected package cython3. Preparing to unpack .../038-cython3_3.0.11+dfsg-1+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../039-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../040-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../041-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../042-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../045-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../051-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../052-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../053-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../054-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../055-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../056-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../057-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../058-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../059-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../060-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../061-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../062-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package xml-core. Preparing to unpack .../063-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../065-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-parso. Preparing to unpack .../066-python3-parso_0.8.3-1_all.deb ... Unpacking python3-parso (0.8.3-1) ... Selecting previously unselected package python3-typeshed. Preparing to unpack .../067-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../068-python3-jedi_0.19.1+ds1-1_all.deb ... Unpacking python3-jedi (0.19.1+ds1-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../069-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... Selecting previously unselected package python3-matplotlib-inline. Preparing to unpack .../070-python3-matplotlib-inline_0.1.6-2_all.deb ... Unpacking python3-matplotlib-inline (0.1.6-2) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../071-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... Selecting previously unselected package python3-prompt-toolkit. Preparing to unpack .../072-python3-prompt-toolkit_3.0.48-1_all.deb ... Unpacking python3-prompt-toolkit (3.0.48-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../073-python3-pygments_2.18.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-1) ... Selecting previously unselected package python3-asttokens. Preparing to unpack .../074-python3-asttokens_2.4.1-2_all.deb ... Unpacking python3-asttokens (2.4.1-2) ... Selecting previously unselected package python3-executing. Preparing to unpack .../075-python3-executing_2.1.0-0.1_all.deb ... Unpacking python3-executing (2.1.0-0.1) ... Selecting previously unselected package python3-pure-eval. Preparing to unpack .../076-python3-pure-eval_0.2.3-1_all.deb ... Unpacking python3-pure-eval (0.2.3-1) ... Selecting previously unselected package python3-stack-data. Preparing to unpack .../077-python3-stack-data_0.6.3-1_all.deb ... Unpacking python3-stack-data (0.6.3-1) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../078-python3-ptyprocess_0.7.0-6_all.deb ... Unpacking python3-ptyprocess (0.7.0-6) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../079-python3-pexpect_4.9-3_all.deb ... Unpacking python3-pexpect (4.9-3) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../080-python3-ipython_8.29.0-1_all.deb ... Unpacking python3-ipython (8.29.0-1) ... Selecting previously unselected package ipython3. Preparing to unpack .../081-ipython3_8.29.0-1_all.deb ... Unpacking ipython3 (8.29.0-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../082-libexpat1-dev_2.6.4-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.4-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../084-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../085-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../086-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../087-libpython3.12t64_3.12.7-3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.7-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../088-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../089-libpython3.12-dev_3.12.7-3_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../090-libpython3-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.7-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../091-python-babel-localedata_2.16.0-1_all.deb ... Unpacking python-babel-localedata (2.16.0-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../092-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../093-python3-babel_2.16.0-1_all.deb ... Unpacking python3-babel (2.16.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../094-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../095-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../096-python3-charset-normalizer_3.4.0-1+b1_arm64.deb ... Unpacking python3-charset-normalizer (3.4.0-1+b1) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../097-python3-defusedxml_0.7.1-2_all.deb ... Unpacking python3-defusedxml (0.7.1-2) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../098-python3.12-dev_3.12.7-3_arm64.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../099-python3-dev_3.12.7-1_arm64.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../100-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../101-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../102-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../103-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../104-python3-markupsafe_2.1.5-1+b3_arm64.deb ... Unpacking python3-markupsafe (2.1.5-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../105-python3-jinja2_3.1.3-1_all.deb ... Unpacking python3-jinja2 (3.1.3-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../106-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../107-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../108-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../109-python3-snowballstemmer_2.2.0-4_all.deb ... Unpacking python3-snowballstemmer (2.2.0-4) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../110-sphinx-common_7.4.7-4_all.deb ... Unpacking sphinx-common (7.4.7-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../111-python3-sphinx_7.4.7-4_all.deb ... Unpacking python3-sphinx (7.4.7-4) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.16.0-1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 21 05:13:03 UTC 2024. Universal Time is now: Thu Nov 21 05:13:03 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.31.0-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.4.7-4) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up cmake (3.31.0-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up python3-prompt-toolkit (3.0.48-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-executing (2.1.0-0.1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-ipython (8.29.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up ipython3 (8.29.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-2_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/writers/tab.pyx because it changed. Compiling python/obitools3/writers/fastq.pyx because it changed. Compiling python/obitools3/writers/fasta.pyx because it changed. Compiling python/obitools3/uri/decode.pyx because it changed. Compiling python/obitools3/parsers/universal.pyx because it changed. Compiling python/obitools3/parsers/tab.pyx because it changed. Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. Compiling python/obitools3/parsers/header.pyx because it changed. Compiling python/obitools3/parsers/genbank.pyx because it changed. Compiling python/obitools3/parsers/fastq.pyx because it changed. Compiling python/obitools3/parsers/fasta.pyx because it changed. Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. Compiling python/obitools3/parsers/embl.pyx because it changed. Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. Compiling python/obitools3/libalign/_rassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. Compiling python/obitools3/libalign/_nws.pyx because it changed. Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. Compiling python/obitools3/libalign/_dynamic.pyx because it changed. Compiling python/obitools3/libalign/_assemble.pyx because it changed. Compiling python/obitools3/format/tab.pyx because it changed. Compiling python/obitools3/format/header.pyx because it changed. Compiling python/obitools3/format/fastq.pyx because it changed. Compiling python/obitools3/format/fasta.pyx because it changed. Compiling python/obitools3/files/universalopener.pyx because it changed. Compiling python/obitools3/files/uncompress.pyx because it changed. Compiling python/obitools3/files/linebuffer.pyx because it changed. Compiling python/obitools3/dms/object.pyx because it changed. Compiling python/obitools3/dms/obiseq.pyx because it changed. Compiling python/obitools3/dms/dms.pyx because it changed. Compiling python/obitools3/dms/view/view.pyx because it changed. Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. Compiling python/obitools3/dms/column/column_idx.pyx because it changed. Compiling python/obitools3/dms/column/column.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. Compiling python/obitools3/commands/uniq.pyx because it changed. Compiling python/obitools3/commands/test.pyx because it changed. Compiling python/obitools3/commands/taxonomy.pyx because it changed. Compiling python/obitools3/commands/tail.pyx because it changed. Compiling python/obitools3/commands/stats.pyx because it changed. Compiling python/obitools3/commands/split.pyx because it changed. Compiling python/obitools3/commands/sort.pyx because it changed. Compiling python/obitools3/commands/rm.pyx because it changed. Compiling python/obitools3/commands/ngsfilter.pyx because it changed. Compiling python/obitools3/commands/ls.pyx because it changed. Compiling python/obitools3/commands/less.pyx because it changed. Compiling python/obitools3/commands/import.pyx because it changed. Compiling python/obitools3/commands/history.pyx because it changed. Compiling python/obitools3/commands/head.pyx because it changed. Compiling python/obitools3/commands/grep.pyx because it changed. Compiling python/obitools3/commands/export.pyx because it changed. Compiling python/obitools3/commands/ecotag.pyx because it changed. Compiling python/obitools3/commands/ecopcr.pyx because it changed. Compiling python/obitools3/commands/count.pyx because it changed. Compiling python/obitools3/commands/clean_dms.pyx because it changed. Compiling python/obitools3/commands/clean.pyx because it changed. Compiling python/obitools3/commands/cat.pyx because it changed. Compiling python/obitools3/commands/build_ref_db.pyx because it changed. Compiling python/obitools3/commands/annotate.pyx because it changed. Compiling python/obitools3/commands/alignpairedend.pyx because it changed. Compiling python/obitools3/commands/align.pyx because it changed. Compiling python/obitools3/commands/addtaxids.pyx because it changed. Compiling python/obitools3/apps/temp.pyx because it changed. Compiling python/obitools3/apps/progress.pyx because it changed. Compiling python/obitools3/apps/logging.pyx because it changed. Compiling python/obitools3/apps/config.pyx because it changed. Compiling python/obitools3/apps/command.pyx because it changed. Compiling python/obitools3/apps/arguments.pyx because it changed. [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx [ 2/80] Cythonizing python/obitools3/apps/command.pyx [ 3/80] Cythonizing python/obitools3/apps/config.pyx [ 4/80] Cythonizing python/obitools3/apps/logging.pyx [ 5/80] Cythonizing python/obitools3/apps/progress.pyx [ 6/80] Cythonizing python/obitools3/apps/temp.pyx [ 7/80] Cythonizing python/obitools3/commands/addtaxids.pyx [ 8/80] Cythonizing python/obitools3/commands/align.pyx [ 9/80] Cythonizing python/obitools3/commands/alignpairedend.pyx [10/80] Cythonizing python/obitools3/commands/annotate.pyx [11/80] Cythonizing python/obitools3/commands/build_ref_db.pyx [12/80] Cythonizing python/obitools3/commands/cat.pyx [13/80] Cythonizing python/obitools3/commands/clean.pyx [14/80] Cythonizing python/obitools3/commands/clean_dms.pyx [15/80] Cythonizing python/obitools3/commands/count.pyx [16/80] Cythonizing python/obitools3/commands/ecopcr.pyx [17/80] Cythonizing python/obitools3/commands/ecotag.pyx [18/80] Cythonizing python/obitools3/commands/export.pyx [19/80] Cythonizing python/obitools3/commands/grep.pyx [20/80] Cythonizing python/obitools3/commands/head.pyx [21/80] Cythonizing python/obitools3/commands/history.pyx [22/80] Cythonizing python/obitools3/commands/import.pyx [23/80] Cythonizing python/obitools3/commands/less.pyx [24/80] Cythonizing python/obitools3/commands/ls.pyx [25/80] Cythonizing python/obitools3/commands/ngsfilter.pyx [26/80] Cythonizing python/obitools3/commands/rm.pyx [27/80] Cythonizing python/obitools3/commands/sort.pyx [28/80] Cythonizing python/obitools3/commands/split.pyx [29/80] Cythonizing python/obitools3/commands/stats.pyx [30/80] Cythonizing python/obitools3/commands/tail.pyx [31/80] Cythonizing python/obitools3/commands/taxonomy.pyx [32/80] Cythonizing python/obitools3/commands/test.pyx [33/80] Cythonizing python/obitools3/commands/uniq.pyx [34/80] Cythonizing python/obitools3/dms/column/column.pyx [35/80] Cythonizing python/obitools3/dms/column/column_idx.pyx [36/80] Cythonizing python/obitools3/dms/column/typed_column/bool.pyx [37/80] Cythonizing python/obitools3/dms/column/typed_column/char.pyx [38/80] Cythonizing python/obitools3/dms/column/typed_column/float.pyx [39/80] Cythonizing python/obitools3/dms/column/typed_column/int.pyx [40/80] Cythonizing python/obitools3/dms/column/typed_column/qual.pyx [41/80] Cythonizing python/obitools3/dms/column/typed_column/seq.pyx [42/80] Cythonizing python/obitools3/dms/column/typed_column/str.pyx [43/80] Cythonizing python/obitools3/dms/dms.pyx [44/80] Cythonizing python/obitools3/dms/obiseq.pyx [45/80] Cythonizing python/obitools3/dms/object.pyx [46/80] Cythonizing python/obitools3/dms/taxo/taxo.pyx [47/80] Cythonizing python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx [48/80] Cythonizing python/obitools3/dms/view/view.pyx [49/80] Cythonizing python/obitools3/files/linebuffer.pyx [50/80] Cythonizing python/obitools3/files/uncompress.pyx [51/80] Cythonizing python/obitools3/files/universalopener.pyx [52/80] Cythonizing python/obitools3/format/fasta.pyx [53/80] Cythonizing python/obitools3/format/fastq.pyx [54/80] Cythonizing python/obitools3/format/header.pyx [55/80] Cythonizing python/obitools3/format/tab.pyx [56/80] Cythonizing python/obitools3/libalign/_assemble.pyx [57/80] Cythonizing python/obitools3/libalign/_dynamic.pyx [58/80] Cythonizing python/obitools3/libalign/_freeendgap.pyx [59/80] Cythonizing python/obitools3/libalign/_freeendgapfm.pyx [60/80] Cythonizing python/obitools3/libalign/_nws.pyx [61/80] Cythonizing python/obitools3/libalign/_qsassemble.pyx [62/80] Cythonizing python/obitools3/libalign/_qsrassemble.pyx [63/80] Cythonizing python/obitools3/libalign/_rassemble.pyx [64/80] Cythonizing python/obitools3/libalign/_solexapairend.pyx [65/80] Cythonizing python/obitools3/libalign/apat_pattern.pyx [66/80] Cythonizing python/obitools3/libalign/shifted_ali.pyx [67/80] Cythonizing python/obitools3/parsers/embl.pyx [68/80] Cythonizing python/obitools3/parsers/embl_genbank_features.pyx [69/80] Cythonizing python/obitools3/parsers/fasta.pyx [70/80] Cythonizing python/obitools3/parsers/fastq.pyx [71/80] Cythonizing python/obitools3/parsers/genbank.pyx [72/80] Cythonizing python/obitools3/parsers/header.pyx [73/80] Cythonizing python/obitools3/parsers/ngsfilter.pyx [74/80] Cythonizing python/obitools3/parsers/tab.pyx [75/80] Cythonizing python/obitools3/parsers/universal.pyx [76/80] Cythonizing python/obitools3/uri/decode.pyx [77/80] Cythonizing python/obitools3/utils.pyx [78/80] Cythonizing python/obitools3/writers/fasta.pyx [79/80] Cythonizing python/obitools3/writers/fastq.pyx [80/80] Cythonizing python/obitools3/writers/tab.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.4s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c" [ 9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c" [ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c" [ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c" [ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c" [ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c" [ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c" [ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c" [ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c" [ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c" [ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file,CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libcobitools3.so -o libcobitools3.so CMakeFiles/cobitools3.dir/obisig.c.o CMakeFiles/cobitools3.dir/obierrno.c.o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o CMakeFiles/cobitools3.dir/obi_lcs.c.o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o CMakeFiles/cobitools3.dir/bloom.c.o CMakeFiles/cobitools3.dir/build_reference_db.c.o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o CMakeFiles/cobitools3.dir/obi_ecotag.c.o CMakeFiles/cobitools3.dir/encode.c.o CMakeFiles/cobitools3.dir/obiavl.c.o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups running build_ext building 'obitools3.utils' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3 aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.uri.decode' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.universal' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.tab' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.genbank' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl_genbank_features' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.shifted_ali' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.apat_pattern' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._solexapairend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._rassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsrassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._nws' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgapfm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgap' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._dynamic' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._assemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/format aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.universalopener' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/files aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.uncompress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.linebuffer' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.object' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.obiseq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.view' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column_idx' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.str' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.seq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.qual' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.int' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.float' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.char' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.bool' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.uniq' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.test' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.taxonomy' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.tail' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.stats' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.split' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.sort' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.rm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ls' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.less' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.import' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.history' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.head' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.grep' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.export' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecotag' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecopcr' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.count' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean_dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.cat' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.build_ref_db' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.annotate' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.alignpairedend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.align' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.addtaxids' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.temp' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.progress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.logging' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.config' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.command' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.arguments' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 449, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 380, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild I: dh_python3 fs:421: renaming libcobitools3.so to libcobitools3.cpython-312-aarch64-linux-gnu.so dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/utils.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol log10: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3161727 and its subdirectories I: Current time: Wed Nov 20 17:31:13 -12 2024 I: pbuilder-time-stamp: 1732167073 Thu Nov 21 05:31:16 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Nov 21 05:31:16 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Nov 21 05:31:16 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Nov 21 05:31:16 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-frXOx3' ==================================================================================== Thu Nov 21 05:31:18 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "2 obitools unstable /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j 3.0.1~b26+dfsg-2" as arguments. Thu Nov 21 05:31:18 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Ri2uDLrz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 05:31:18 UTC 2024 I: Downloading source for unstable/obitools=3.0.1~b26+dfsg-2 Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 272 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (dsc) [2081 B] Get:2 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (tar) [255 kB] Get:3 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (diff) [14.3 kB] Fetched 272 kB in 0s (13.5 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'obitools' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/obitools.git Please use: git clone https://salsa.debian.org/med-team/obitools.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 272 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (dsc) [2081 B] Get:2 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (tar) [255 kB] Get:3 http://deb.debian.org/debian unstable/main obitools 3.0.1~b26+dfsg-2 (diff) [14.3 kB] Fetched 272 kB in 0s (13.5 MB/s) Download complete and in download only mode ============================================================================= Re-Building obitools in unstable on arm64 on codethink02-arm64 now. Date: Thu Nov 21 05:31:18 GMT 2024 Date UTC: Thu Nov 21 05:31:18 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_3lsc + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' obitools = debian-installer -o obitools = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' obitools = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_3lsc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 19:31:18 +14 2024 I: pbuilder-time-stamp: 1732167078 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [obitools_3.0.1~b26+dfsg-2.dsc] I: copying [./obitools_3.0.1~b26+dfsg.orig.tar.xz] I: copying [./obitools_3.0.1~b26+dfsg-2.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Nov 21 00:11:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./obitools_3.0.1~b26+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting obitools in obitools-3.0.1~b26+dfsg dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg.orig.tar.xz dpkg-source: info: unpacking obitools_3.0.1~b26+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying cmake_debian_options dpkg-source: info: applying no_cython_in_binary_package.patch dpkg-source: info: applying any_arch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 21 05:31 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=40fd4dbb23344cf1a489f6ea0f331ec3 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2054746 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_3lsc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-dev, python3-sphinx, cython3, ipython3, cmake dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-dev; however: Package python3-dev is not installed. pbuilder-satisfydepends-dummy depends on python3-sphinx; however: Package python3-sphinx is not installed. pbuilder-satisfydepends-dummy depends on cython3; however: Package cython3 is not installed. pbuilder-satisfydepends-dummy depends on ipython3; however: Package ipython3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} cmake{a} cmake-data{a} cython3{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} docutils-common{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} ipython3{a} libarchive-zip-perl{a} libarchive13t64{a} libbrotli1{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libexpat1-dev{a} libfile-stripnondeterminism-perl{a} libgssapi-krb5-2{a} libicu72{a} libjs-jquery{a} libjs-sphinxdoc{a} libjs-underscore{a} libjson-perl{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap-2.5-0{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnsl2{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-dev{a} libpython3-stdlib{a} libpython3.12-dev{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libpython3.12t64{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libuv1t64{a} libxml2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} procps{a} python-babel-localedata{a} python3{a} python3-alabaster{a} python3-asttokens{a} python3-autocommand{a} python3-babel{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-decorator{a} python3-defusedxml{a} python3-dev{a} python3-docutils{a} python3-executing{a} python3-idna{a} python3-imagesize{a} python3-inflect{a} python3-ipython{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jedi{a} python3-jinja2{a} python3-markupsafe{a} python3-matplotlib-inline{a} python3-minimal{a} python3-more-itertools{a} python3-packaging{a} python3-parso{a} python3-pexpect{a} python3-pkg-resources{a} python3-prompt-toolkit{a} python3-ptyprocess{a} python3-pure-eval{a} python3-pygments{a} python3-requests{a} python3-roman{a} python3-setuptools{a} python3-snowballstemmer{a} python3-sphinx{a} python3-stack-data{a} python3-traitlets{a} python3-typeguard{a} python3-typeshed{a} python3-typing-extensions{a} python3-urllib3{a} python3-wcwidth{a} python3-zipp{a} python3.12{a} python3.12-dev{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} sgml-base{a} sphinx-common{a} tzdata{a} xml-core{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: curl javascript-common krb5-locales libarchive-cpio-perl libjson-xs-perl libldap-common libltdl-dev libmail-sendmail-perl libpaper-utils libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix python3-matplotlib python3-pil wget 0 packages upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 68.3 MB of archives. After unpacking 304 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.12.7-1 [26.8 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.12.7-1 [9708 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.12.7-1 [27.8 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 sgml-base all 1.31 [15.4 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-6 [62.3 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-6 [872 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 cmake-data all 3.31.0-1 [2265 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 cmake arm64 3.31.0-1 [9874 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 cython3 arm64 3.0.11+dfsg-1+b1 [2726 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 python3-more-itertools all 10.5.0-1 [63.8 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 python3-typing-extensions all 4.12.2-2 [73.0 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 python3-typeguard all 4.4.1-1 [37.0 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.context all 6.0.0-1 [7984 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 python3-pkg-resources all 75.2.0-1 [213 kB] Get: 81 http://deb.debian.org/debian unstable/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 82 http://deb.debian.org/debian unstable/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 83 http://deb.debian.org/debian unstable/main arm64 python3-setuptools all 75.2.0-1 [731 kB] Get: 84 http://deb.debian.org/debian unstable/main arm64 dh-python all 6.20241024 [109 kB] Get: 85 http://deb.debian.org/debian unstable/main arm64 xml-core all 0.19 [20.1 kB] Get: 86 http://deb.debian.org/debian unstable/main arm64 docutils-common all 0.21.2+dfsg-2 [128 kB] Get: 87 http://deb.debian.org/debian unstable/main arm64 python3-decorator all 5.1.1-5 [15.1 kB] Get: 88 http://deb.debian.org/debian unstable/main arm64 python3-parso all 0.8.3-1 [67.4 kB] Get: 89 http://deb.debian.org/debian unstable/main arm64 python3-typeshed all 0.0~git20231111.6764465-3 [1258 kB] Get: 90 http://deb.debian.org/debian unstable/main arm64 python3-jedi all 0.19.1+ds1-1 [691 kB] Get: 91 http://deb.debian.org/debian unstable/main arm64 python3-traitlets all 5.14.3+really5.14.3-1 [70.9 kB] Get: 92 http://deb.debian.org/debian unstable/main arm64 python3-matplotlib-inline all 0.1.6-2 [8652 B] Get: 93 http://deb.debian.org/debian unstable/main arm64 python3-wcwidth all 0.2.13+dfsg1-1 [24.9 kB] Get: 94 http://deb.debian.org/debian unstable/main arm64 python3-prompt-toolkit all 3.0.48-1 [277 kB] Get: 95 http://deb.debian.org/debian unstable/main arm64 python3-pygments all 2.18.0+dfsg-1 [836 kB] Get: 96 http://deb.debian.org/debian unstable/main arm64 python3-asttokens all 2.4.1-2 [20.5 kB] Get: 97 http://deb.debian.org/debian unstable/main arm64 python3-executing all 2.1.0-0.1 [23.9 kB] Get: 98 http://deb.debian.org/debian unstable/main arm64 python3-pure-eval all 0.2.3-1 [11.2 kB] Get: 99 http://deb.debian.org/debian unstable/main arm64 python3-stack-data all 0.6.3-1 [21.6 kB] Get: 100 http://deb.debian.org/debian unstable/main arm64 python3-ptyprocess all 0.7.0-6 [14.5 kB] Get: 101 http://deb.debian.org/debian unstable/main arm64 python3-pexpect all 4.9-3 [55.6 kB] Get: 102 http://deb.debian.org/debian unstable/main arm64 python3-ipython all 8.29.0-1 [567 kB] Get: 103 http://deb.debian.org/debian unstable/main arm64 ipython3 all 8.29.0-1 [36.9 kB] Get: 104 http://deb.debian.org/debian unstable/main arm64 libexpat1-dev arm64 2.6.4-1 [143 kB] Get: 105 http://deb.debian.org/debian unstable/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 106 http://deb.debian.org/debian unstable/main arm64 libjs-underscore all 1.13.4~dfsg+~1.11.4-3 [116 kB] Get: 107 http://deb.debian.org/debian unstable/main arm64 libjs-sphinxdoc all 7.4.7-4 [158 kB] Get: 108 http://deb.debian.org/debian unstable/main arm64 libjson-perl all 4.10000-1 [87.5 kB] Get: 109 http://deb.debian.org/debian unstable/main arm64 libpython3.12t64 arm64 3.12.7-3 [1982 kB] Get: 110 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 111 http://deb.debian.org/debian unstable/main arm64 libpython3.12-dev arm64 3.12.7-3 [4792 kB] Get: 112 http://deb.debian.org/debian unstable/main arm64 libpython3-dev arm64 3.12.7-1 [9980 B] Get: 113 http://deb.debian.org/debian unstable/main arm64 python-babel-localedata all 2.16.0-1 [5696 kB] Get: 114 http://deb.debian.org/debian unstable/main arm64 python3-alabaster all 0.7.16-0.1 [27.9 kB] Get: 115 http://deb.debian.org/debian unstable/main arm64 python3-babel all 2.16.0-1 [114 kB] Get: 116 http://deb.debian.org/debian unstable/main arm64 python3-certifi all 2024.8.30+dfsg-1 [9576 B] Get: 117 http://deb.debian.org/debian unstable/main arm64 python3-chardet all 5.2.0+dfsg-1 [107 kB] Get: 118 http://deb.debian.org/debian unstable/main arm64 python3-charset-normalizer arm64 3.4.0-1+b1 [129 kB] Get: 119 http://deb.debian.org/debian unstable/main arm64 python3-defusedxml all 0.7.1-2 [43.3 kB] Get: 120 http://deb.debian.org/debian unstable/main arm64 python3.12-dev arm64 3.12.7-3 [505 kB] Get: 121 http://deb.debian.org/debian unstable/main arm64 python3-dev arm64 3.12.7-1 [26.1 kB] Get: 122 http://deb.debian.org/debian unstable/main arm64 python3-roman all 4.2-1 [10.4 kB] Get: 123 http://deb.debian.org/debian unstable/main arm64 python3-docutils all 0.21.2+dfsg-2 [403 kB] Get: 124 http://deb.debian.org/debian unstable/main arm64 python3-idna all 3.8-2 [41.6 kB] Get: 125 http://deb.debian.org/debian unstable/main arm64 python3-imagesize all 1.4.1-1 [6688 B] Get: 126 http://deb.debian.org/debian unstable/main arm64 python3-markupsafe arm64 2.1.5-1+b3 [14.0 kB] Get: 127 http://deb.debian.org/debian unstable/main arm64 python3-jinja2 all 3.1.3-1 [119 kB] Get: 128 http://deb.debian.org/debian unstable/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 129 http://deb.debian.org/debian unstable/main arm64 python3-urllib3 all 2.0.7-2 [111 kB] Get: 130 http://deb.debian.org/debian unstable/main arm64 python3-requests all 2.32.3+dfsg-1 [71.9 kB] Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 7.4.7-4 [731 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 7.4.7-4 [588 kB] Fetched 68.3 MB in 0s (200 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20404 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.7-1_arm64.deb ... Unpacking python3-minimal (3.12.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3-minimal (3.12.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21466 files and directories currently installed.) Preparing to unpack .../000-python3_3.12.7-1_arm64.deb ... Unpacking python3 (3.12.7-1) ... Selecting previously unselected package sgml-base. Preparing to unpack .../001-sgml-base_1.31_all.deb ... Unpacking sgml-base (1.31) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-6_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-6) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-6_arm64.deb ... Unpacking procps (2:4.0.4-6) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../005-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../006-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../007-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../008-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../009-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../010-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../011-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../012-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../013-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../014-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../015-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../021-cmake-data_3.31.0-1_all.deb ... Unpacking cmake-data (3.31.0-1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../022-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../023-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package libarchive13t64:arm64. Preparing to unpack .../024-libarchive13t64_3.7.4-1.1_arm64.deb ... Unpacking libarchive13t64:arm64 (3.7.4-1.1) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../025-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../026-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../027-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../028-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../029-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../030-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../032-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../033-libcurl4t64_8.11.0-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.11.0-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../034-libjsoncpp26_1.9.6-3_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-3) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../035-librhash1_1.4.5-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.5-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../036-libuv1t64_1.48.0-7_arm64.deb ... Unpacking libuv1t64:arm64 (1.48.0-7) ... Selecting previously unselected package cmake. Preparing to unpack .../037-cmake_3.31.0-1_arm64.deb ... Unpacking cmake (3.31.0-1) ... Selecting previously unselected package cython3. Preparing to unpack .../038-cython3_3.0.11+dfsg-1+b1_arm64.deb ... Unpacking cython3 (3.0.11+dfsg-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../039-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../040-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../041-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../042-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../043-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../044-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../045-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../046-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../047-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../048-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../049-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../050-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../051-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../052-python3-more-itertools_10.5.0-1_all.deb ... Unpacking python3-more-itertools (10.5.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../053-python3-typing-extensions_4.12.2-2_all.deb ... Unpacking python3-typing-extensions (4.12.2-2) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../054-python3-typeguard_4.4.1-1_all.deb ... Unpacking python3-typeguard (4.4.1-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../055-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../056-python3-jaraco.context_6.0.0-1_all.deb ... Unpacking python3-jaraco.context (6.0.0-1) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../057-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../058-python3-pkg-resources_75.2.0-1_all.deb ... Unpacking python3-pkg-resources (75.2.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../059-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../060-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../061-python3-setuptools_75.2.0-1_all.deb ... Unpacking python3-setuptools (75.2.0-1) ... Selecting previously unselected package dh-python. Preparing to unpack .../062-dh-python_6.20241024_all.deb ... Unpacking dh-python (6.20241024) ... Selecting previously unselected package xml-core. Preparing to unpack .../063-xml-core_0.19_all.deb ... Unpacking xml-core (0.19) ... Selecting previously unselected package docutils-common. Preparing to unpack .../064-docutils-common_0.21.2+dfsg-2_all.deb ... Unpacking docutils-common (0.21.2+dfsg-2) ... Selecting previously unselected package python3-decorator. Preparing to unpack .../065-python3-decorator_5.1.1-5_all.deb ... Unpacking python3-decorator (5.1.1-5) ... Selecting previously unselected package python3-parso. Preparing to unpack .../066-python3-parso_0.8.3-1_all.deb ... Unpacking python3-parso (0.8.3-1) ... Selecting previously unselected package python3-typeshed. Preparing to unpack .../067-python3-typeshed_0.0~git20231111.6764465-3_all.deb ... Unpacking python3-typeshed (0.0~git20231111.6764465-3) ... Selecting previously unselected package python3-jedi. Preparing to unpack .../068-python3-jedi_0.19.1+ds1-1_all.deb ... Unpacking python3-jedi (0.19.1+ds1-1) ... Selecting previously unselected package python3-traitlets. Preparing to unpack .../069-python3-traitlets_5.14.3+really5.14.3-1_all.deb ... Unpacking python3-traitlets (5.14.3+really5.14.3-1) ... Selecting previously unselected package python3-matplotlib-inline. Preparing to unpack .../070-python3-matplotlib-inline_0.1.6-2_all.deb ... Unpacking python3-matplotlib-inline (0.1.6-2) ... Selecting previously unselected package python3-wcwidth. Preparing to unpack .../071-python3-wcwidth_0.2.13+dfsg1-1_all.deb ... Unpacking python3-wcwidth (0.2.13+dfsg1-1) ... Selecting previously unselected package python3-prompt-toolkit. Preparing to unpack .../072-python3-prompt-toolkit_3.0.48-1_all.deb ... Unpacking python3-prompt-toolkit (3.0.48-1) ... Selecting previously unselected package python3-pygments. Preparing to unpack .../073-python3-pygments_2.18.0+dfsg-1_all.deb ... Unpacking python3-pygments (2.18.0+dfsg-1) ... Selecting previously unselected package python3-asttokens. Preparing to unpack .../074-python3-asttokens_2.4.1-2_all.deb ... Unpacking python3-asttokens (2.4.1-2) ... Selecting previously unselected package python3-executing. Preparing to unpack .../075-python3-executing_2.1.0-0.1_all.deb ... Unpacking python3-executing (2.1.0-0.1) ... Selecting previously unselected package python3-pure-eval. Preparing to unpack .../076-python3-pure-eval_0.2.3-1_all.deb ... Unpacking python3-pure-eval (0.2.3-1) ... Selecting previously unselected package python3-stack-data. Preparing to unpack .../077-python3-stack-data_0.6.3-1_all.deb ... Unpacking python3-stack-data (0.6.3-1) ... Selecting previously unselected package python3-ptyprocess. Preparing to unpack .../078-python3-ptyprocess_0.7.0-6_all.deb ... Unpacking python3-ptyprocess (0.7.0-6) ... Selecting previously unselected package python3-pexpect. Preparing to unpack .../079-python3-pexpect_4.9-3_all.deb ... Unpacking python3-pexpect (4.9-3) ... Selecting previously unselected package python3-ipython. Preparing to unpack .../080-python3-ipython_8.29.0-1_all.deb ... Unpacking python3-ipython (8.29.0-1) ... Selecting previously unselected package ipython3. Preparing to unpack .../081-ipython3_8.29.0-1_all.deb ... Unpacking ipython3 (8.29.0-1) ... Selecting previously unselected package libexpat1-dev:arm64. Preparing to unpack .../082-libexpat1-dev_2.6.4-1_arm64.deb ... Unpacking libexpat1-dev:arm64 (2.6.4-1) ... Selecting previously unselected package libjs-jquery. Preparing to unpack .../083-libjs-jquery_3.6.1+dfsg+~3.5.14-1_all.deb ... Unpacking libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Selecting previously unselected package libjs-underscore. Preparing to unpack .../084-libjs-underscore_1.13.4~dfsg+~1.11.4-3_all.deb ... Unpacking libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Selecting previously unselected package libjs-sphinxdoc. Preparing to unpack .../085-libjs-sphinxdoc_7.4.7-4_all.deb ... Unpacking libjs-sphinxdoc (7.4.7-4) ... Selecting previously unselected package libjson-perl. Preparing to unpack .../086-libjson-perl_4.10000-1_all.deb ... Unpacking libjson-perl (4.10000-1) ... Selecting previously unselected package libpython3.12t64:arm64. Preparing to unpack .../087-libpython3.12t64_3.12.7-3_arm64.deb ... Unpacking libpython3.12t64:arm64 (3.12.7-3) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../088-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpython3.12-dev:arm64. Preparing to unpack .../089-libpython3.12-dev_3.12.7-3_arm64.deb ... Unpacking libpython3.12-dev:arm64 (3.12.7-3) ... Selecting previously unselected package libpython3-dev:arm64. Preparing to unpack .../090-libpython3-dev_3.12.7-1_arm64.deb ... Unpacking libpython3-dev:arm64 (3.12.7-1) ... Selecting previously unselected package python-babel-localedata. Preparing to unpack .../091-python-babel-localedata_2.16.0-1_all.deb ... Unpacking python-babel-localedata (2.16.0-1) ... Selecting previously unselected package python3-alabaster. Preparing to unpack .../092-python3-alabaster_0.7.16-0.1_all.deb ... Unpacking python3-alabaster (0.7.16-0.1) ... Selecting previously unselected package python3-babel. Preparing to unpack .../093-python3-babel_2.16.0-1_all.deb ... Unpacking python3-babel (2.16.0-1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../094-python3-certifi_2024.8.30+dfsg-1_all.deb ... Unpacking python3-certifi (2024.8.30+dfsg-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../095-python3-chardet_5.2.0+dfsg-1_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-1) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../096-python3-charset-normalizer_3.4.0-1+b1_arm64.deb ... Unpacking python3-charset-normalizer (3.4.0-1+b1) ... Selecting previously unselected package python3-defusedxml. Preparing to unpack .../097-python3-defusedxml_0.7.1-2_all.deb ... Unpacking python3-defusedxml (0.7.1-2) ... Selecting previously unselected package python3.12-dev. Preparing to unpack .../098-python3.12-dev_3.12.7-3_arm64.deb ... Unpacking python3.12-dev (3.12.7-3) ... Selecting previously unselected package python3-dev. Preparing to unpack .../099-python3-dev_3.12.7-1_arm64.deb ... Unpacking python3-dev (3.12.7-1) ... Selecting previously unselected package python3-roman. Preparing to unpack .../100-python3-roman_4.2-1_all.deb ... Unpacking python3-roman (4.2-1) ... Selecting previously unselected package python3-docutils. Preparing to unpack .../101-python3-docutils_0.21.2+dfsg-2_all.deb ... Unpacking python3-docutils (0.21.2+dfsg-2) ... Selecting previously unselected package python3-idna. Preparing to unpack .../102-python3-idna_3.8-2_all.deb ... Unpacking python3-idna (3.8-2) ... Selecting previously unselected package python3-imagesize. Preparing to unpack .../103-python3-imagesize_1.4.1-1_all.deb ... Unpacking python3-imagesize (1.4.1-1) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../104-python3-markupsafe_2.1.5-1+b3_arm64.deb ... Unpacking python3-markupsafe (2.1.5-1+b3) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../105-python3-jinja2_3.1.3-1_all.deb ... Unpacking python3-jinja2 (3.1.3-1) ... Selecting previously unselected package python3-packaging. Preparing to unpack .../106-python3-packaging_24.2-1_all.deb ... Unpacking python3-packaging (24.2-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../107-python3-urllib3_2.0.7-2_all.deb ... Unpacking python3-urllib3 (2.0.7-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../108-python3-requests_2.32.3+dfsg-1_all.deb ... Unpacking python3-requests (2.32.3+dfsg-1) ... Selecting previously unselected package python3-snowballstemmer. Preparing to unpack .../109-python3-snowballstemmer_2.2.0-4_all.deb ... Unpacking python3-snowballstemmer (2.2.0-4) ... Selecting previously unselected package sphinx-common. Preparing to unpack .../110-sphinx-common_7.4.7-4_all.deb ... Unpacking sphinx-common (7.4.7-4) ... Selecting previously unselected package python3-sphinx. Preparing to unpack .../111-python3-sphinx_7.4.7-4_all.deb ... Unpacking python3-sphinx (7.4.7-4) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libbrotli1:arm64 (1.1.0-2+b6) ... Setting up libuv1t64:arm64 (1.48.0-7) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up python-babel-localedata (2.16.0-1) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Nov 21 05:31:43 UTC 2024. Universal Time is now: Thu Nov 21 05:31:43 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... Setting up libexpat1-dev:arm64 (2.6.4-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-6) ... Setting up autopoint (0.22.5-2) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-6) ... Setting up libjson-perl (4.10000-1) ... Setting up netbase (6.4) ... Setting up sgml-base (1.31) ... Setting up cmake-data (3.31.0-1) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up openssl (3.3.2-2) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libjs-underscore (1.13.4~dfsg+~1.11.4-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libjs-sphinxdoc (7.4.7-4) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up xml-core (0.19) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up sphinx-common (7.4.7-4) ... Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up cmake (3.31.0-1) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3.12t64:arm64 (3.12.7-3) ... Setting up libpython3-stdlib:arm64 (3.12.7-1) ... Setting up python3 (3.12.7-1) ... Setting up libpython3.12-dev:arm64 (3.12.7-3) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up python3-markupsafe (2.1.5-1+b3) ... Setting up python3-roman (4.2-1) ... Setting up python3-decorator (5.1.1-5) ... Setting up python3-jinja2 (3.1.3-1) ... Setting up python3-packaging (24.2-1) ... Setting up python3-wcwidth (0.2.13+dfsg1-1) ... Setting up python3-certifi (2024.8.30+dfsg-1) ... Setting up python3-typeshed (0.0~git20231111.6764465-3) ... Setting up python3-snowballstemmer (2.2.0-4) ... Setting up python3-idna (3.8-2) ... Setting up python3.12-dev (3.12.7-3) ... Setting up cython3 (3.0.11+dfsg-1+b1) ... Setting up python3-typing-extensions (4.12.2-2) ... Setting up python3-urllib3 (2.0.7-2) ... Setting up python3-traitlets (5.14.3+really5.14.3-1) ... Setting up python3-imagesize (1.4.1-1) ... Setting up python3-ptyprocess (0.7.0-6) ... Setting up python3-prompt-toolkit (3.0.48-1) ... Setting up python3-more-itertools (10.5.0-1) ... Setting up python3-pure-eval (0.2.3-1) ... Setting up libpython3-dev:arm64 (3.12.7-1) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.0-1) ... Setting up python3-parso (0.8.3-1) ... Setting up python3-defusedxml (0.7.1-2) ... Setting up python3-asttokens (2.4.1-2) ... Setting up python3-charset-normalizer (3.4.0-1+b1) ... Setting up python3-alabaster (0.7.16-0.1) ... Setting up python3-typeguard (4.4.1-1) ... Setting up python3-matplotlib-inline (0.1.6-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-executing (2.1.0-0.1) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-pexpect (4.9-3) ... Setting up python3-dev (3.12.7-1) ... Setting up python3-stack-data (0.6.3-1) ... Setting up python3-pkg-resources (75.2.0-1) ... Setting up python3-setuptools (75.2.0-1) ... Setting up python3-jedi (0.19.1+ds1-1) ... Setting up python3-babel (2.16.0-1) ... update-alternatives: using /usr/bin/pybabel-python3 to provide /usr/bin/pybabel (pybabel) in auto mode Setting up python3-pygments (2.18.0+dfsg-1) ... Setting up python3-chardet (5.2.0+dfsg-1) ... Setting up python3-ipython (8.29.0-1) ... Setting up python3-requests (2.32.3+dfsg-1) ... Setting up ipython3 (8.29.0-1) ... Setting up dh-python (6.20241024) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for sgml-base (1.31) ... Setting up docutils-common (0.21.2+dfsg-2) ... Processing triggers for sgml-base (1.31) ... Setting up python3-docutils (0.21.2+dfsg-2) ... Setting up python3-sphinx (7.4.7-4) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-2_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' # skip it make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_autoreconf_clean -O--buildsystem=pybuild debian/rules override_dh_clean make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_clean rm -rf build rm -f doc/sphinx/build_dir.txt rm -rf src/OBITools.egg-info make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.12 setup.py config Compiling python/obitools3/utils.pyx because it changed. Compiling python/obitools3/writers/tab.pyx because it changed. Compiling python/obitools3/writers/fastq.pyx because it changed. Compiling python/obitools3/writers/fasta.pyx because it changed. Compiling python/obitools3/uri/decode.pyx because it changed. Compiling python/obitools3/parsers/universal.pyx because it changed. Compiling python/obitools3/parsers/tab.pyx because it changed. Compiling python/obitools3/parsers/ngsfilter.pyx because it changed. Compiling python/obitools3/parsers/header.pyx because it changed. Compiling python/obitools3/parsers/genbank.pyx because it changed. Compiling python/obitools3/parsers/fastq.pyx because it changed. Compiling python/obitools3/parsers/fasta.pyx because it changed. Compiling python/obitools3/parsers/embl_genbank_features.pyx because it changed. Compiling python/obitools3/parsers/embl.pyx because it changed. Compiling python/obitools3/libalign/shifted_ali.pyx because it changed. Compiling python/obitools3/libalign/apat_pattern.pyx because it changed. Compiling python/obitools3/libalign/_solexapairend.pyx because it changed. Compiling python/obitools3/libalign/_rassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsrassemble.pyx because it changed. Compiling python/obitools3/libalign/_qsassemble.pyx because it changed. Compiling python/obitools3/libalign/_nws.pyx because it changed. Compiling python/obitools3/libalign/_freeendgapfm.pyx because it changed. Compiling python/obitools3/libalign/_freeendgap.pyx because it changed. Compiling python/obitools3/libalign/_dynamic.pyx because it changed. Compiling python/obitools3/libalign/_assemble.pyx because it changed. Compiling python/obitools3/format/tab.pyx because it changed. Compiling python/obitools3/format/header.pyx because it changed. Compiling python/obitools3/format/fastq.pyx because it changed. Compiling python/obitools3/format/fasta.pyx because it changed. Compiling python/obitools3/files/universalopener.pyx because it changed. Compiling python/obitools3/files/uncompress.pyx because it changed. Compiling python/obitools3/files/linebuffer.pyx because it changed. Compiling python/obitools3/dms/object.pyx because it changed. Compiling python/obitools3/dms/obiseq.pyx because it changed. Compiling python/obitools3/dms/dms.pyx because it changed. Compiling python/obitools3/dms/view/view.pyx because it changed. Compiling python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx because it changed. Compiling python/obitools3/dms/taxo/taxo.pyx because it changed. Compiling python/obitools3/dms/column/column_idx.pyx because it changed. Compiling python/obitools3/dms/column/column.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/str.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/seq.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/qual.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/int.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/float.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/char.pyx because it changed. Compiling python/obitools3/dms/column/typed_column/bool.pyx because it changed. Compiling python/obitools3/commands/uniq.pyx because it changed. Compiling python/obitools3/commands/test.pyx because it changed. Compiling python/obitools3/commands/taxonomy.pyx because it changed. Compiling python/obitools3/commands/tail.pyx because it changed. Compiling python/obitools3/commands/stats.pyx because it changed. Compiling python/obitools3/commands/split.pyx because it changed. Compiling python/obitools3/commands/sort.pyx because it changed. Compiling python/obitools3/commands/rm.pyx because it changed. Compiling python/obitools3/commands/ngsfilter.pyx because it changed. Compiling python/obitools3/commands/ls.pyx because it changed. Compiling python/obitools3/commands/less.pyx because it changed. Compiling python/obitools3/commands/import.pyx because it changed. Compiling python/obitools3/commands/history.pyx because it changed. Compiling python/obitools3/commands/head.pyx because it changed. Compiling python/obitools3/commands/grep.pyx because it changed. Compiling python/obitools3/commands/export.pyx because it changed. Compiling python/obitools3/commands/ecotag.pyx because it changed. Compiling python/obitools3/commands/ecopcr.pyx because it changed. Compiling python/obitools3/commands/count.pyx because it changed. Compiling python/obitools3/commands/clean_dms.pyx because it changed. Compiling python/obitools3/commands/clean.pyx because it changed. Compiling python/obitools3/commands/cat.pyx because it changed. Compiling python/obitools3/commands/build_ref_db.pyx because it changed. Compiling python/obitools3/commands/annotate.pyx because it changed. Compiling python/obitools3/commands/alignpairedend.pyx because it changed. Compiling python/obitools3/commands/align.pyx because it changed. Compiling python/obitools3/commands/addtaxids.pyx because it changed. Compiling python/obitools3/apps/temp.pyx because it changed. Compiling python/obitools3/apps/progress.pyx because it changed. Compiling python/obitools3/apps/logging.pyx because it changed. Compiling python/obitools3/apps/config.pyx because it changed. Compiling python/obitools3/apps/command.pyx because it changed. Compiling python/obitools3/apps/arguments.pyx because it changed. [ 1/80] Cythonizing python/obitools3/apps/arguments.pyx [ 2/80] Cythonizing python/obitools3/apps/command.pyx [ 3/80] Cythonizing python/obitools3/apps/config.pyx [ 4/80] Cythonizing python/obitools3/apps/logging.pyx [ 5/80] Cythonizing python/obitools3/apps/progress.pyx [ 6/80] Cythonizing python/obitools3/apps/temp.pyx [ 7/80] Cythonizing python/obitools3/commands/addtaxids.pyx [ 8/80] Cythonizing python/obitools3/commands/align.pyx [ 9/80] Cythonizing python/obitools3/commands/alignpairedend.pyx [10/80] Cythonizing python/obitools3/commands/annotate.pyx [11/80] Cythonizing python/obitools3/commands/build_ref_db.pyx [12/80] Cythonizing python/obitools3/commands/cat.pyx [13/80] Cythonizing python/obitools3/commands/clean.pyx [14/80] Cythonizing python/obitools3/commands/clean_dms.pyx [15/80] Cythonizing python/obitools3/commands/count.pyx [16/80] Cythonizing python/obitools3/commands/ecopcr.pyx [17/80] Cythonizing python/obitools3/commands/ecotag.pyx [18/80] Cythonizing python/obitools3/commands/export.pyx [19/80] Cythonizing python/obitools3/commands/grep.pyx [20/80] Cythonizing python/obitools3/commands/head.pyx [21/80] Cythonizing python/obitools3/commands/history.pyx [22/80] Cythonizing python/obitools3/commands/import.pyx [23/80] Cythonizing python/obitools3/commands/less.pyx [24/80] Cythonizing python/obitools3/commands/ls.pyx [25/80] Cythonizing python/obitools3/commands/ngsfilter.pyx [26/80] Cythonizing python/obitools3/commands/rm.pyx [27/80] Cythonizing python/obitools3/commands/sort.pyx [28/80] Cythonizing python/obitools3/commands/split.pyx [29/80] Cythonizing python/obitools3/commands/stats.pyx [30/80] Cythonizing python/obitools3/commands/tail.pyx [31/80] Cythonizing python/obitools3/commands/taxonomy.pyx [32/80] Cythonizing python/obitools3/commands/test.pyx [33/80] Cythonizing python/obitools3/commands/uniq.pyx [34/80] Cythonizing python/obitools3/dms/column/column.pyx [35/80] Cythonizing python/obitools3/dms/column/column_idx.pyx [36/80] Cythonizing python/obitools3/dms/column/typed_column/bool.pyx [37/80] Cythonizing python/obitools3/dms/column/typed_column/char.pyx [38/80] Cythonizing python/obitools3/dms/column/typed_column/float.pyx [39/80] Cythonizing python/obitools3/dms/column/typed_column/int.pyx [40/80] Cythonizing python/obitools3/dms/column/typed_column/qual.pyx [41/80] Cythonizing python/obitools3/dms/column/typed_column/seq.pyx [42/80] Cythonizing python/obitools3/dms/column/typed_column/str.pyx [43/80] Cythonizing python/obitools3/dms/dms.pyx [44/80] Cythonizing python/obitools3/dms/obiseq.pyx [45/80] Cythonizing python/obitools3/dms/object.pyx [46/80] Cythonizing python/obitools3/dms/taxo/taxo.pyx [47/80] Cythonizing python/obitools3/dms/view/typed_view/view_NUC_SEQS.pyx [48/80] Cythonizing python/obitools3/dms/view/view.pyx [49/80] Cythonizing python/obitools3/files/linebuffer.pyx [50/80] Cythonizing python/obitools3/files/uncompress.pyx [51/80] Cythonizing python/obitools3/files/universalopener.pyx [52/80] Cythonizing python/obitools3/format/fasta.pyx [53/80] Cythonizing python/obitools3/format/fastq.pyx [54/80] Cythonizing python/obitools3/format/header.pyx [55/80] Cythonizing python/obitools3/format/tab.pyx [56/80] Cythonizing python/obitools3/libalign/_assemble.pyx [57/80] Cythonizing python/obitools3/libalign/_dynamic.pyx [58/80] Cythonizing python/obitools3/libalign/_freeendgap.pyx [59/80] Cythonizing python/obitools3/libalign/_freeendgapfm.pyx [60/80] Cythonizing python/obitools3/libalign/_nws.pyx [61/80] Cythonizing python/obitools3/libalign/_qsassemble.pyx [62/80] Cythonizing python/obitools3/libalign/_qsrassemble.pyx [63/80] Cythonizing python/obitools3/libalign/_rassemble.pyx [64/80] Cythonizing python/obitools3/libalign/_solexapairend.pyx [65/80] Cythonizing python/obitools3/libalign/apat_pattern.pyx [66/80] Cythonizing python/obitools3/libalign/shifted_ali.pyx [67/80] Cythonizing python/obitools3/parsers/embl.pyx [68/80] Cythonizing python/obitools3/parsers/embl_genbank_features.pyx [69/80] Cythonizing python/obitools3/parsers/fasta.pyx [70/80] Cythonizing python/obitools3/parsers/fastq.pyx [71/80] Cythonizing python/obitools3/parsers/genbank.pyx [72/80] Cythonizing python/obitools3/parsers/header.pyx [73/80] Cythonizing python/obitools3/parsers/ngsfilter.pyx [74/80] Cythonizing python/obitools3/parsers/tab.pyx [75/80] Cythonizing python/obitools3/parsers/universal.pyx [76/80] Cythonizing python/obitools3/uri/decode.pyx [77/80] Cythonizing python/obitools3/utils.pyx [78/80] Cythonizing python/obitools3/writers/fasta.pyx [79/80] Cythonizing python/obitools3/writers/fastq.pyx [80/80] Cythonizing python/obitools3/writers/tab.pyx running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- The C compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/cc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [ 1%] Building C object CMakeFiles/cobitools3.dir/obisig.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obisig.c.o -MF CMakeFiles/cobitools3.dir/obisig.c.o.d -o CMakeFiles/cobitools3.dir/obisig.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obisig.c" [ 3%] Building C object CMakeFiles/cobitools3.dir/obierrno.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obierrno.c.o -MF CMakeFiles/cobitools3.dir/obierrno.c.o.d -o CMakeFiles/cobitools3.dir/obierrno.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obierrno.c" [ 5%] Building C object CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -MF CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o.d -o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms_taxonomy.c" [ 7%] Building C object CMakeFiles/cobitools3.dir/obiblob_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -MF CMakeFiles/cobitools3.dir/obiblob_indexer.c.o.d -o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob_indexer.c" [ 9%] Building C object CMakeFiles/cobitools3.dir/obi_lcs.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_lcs.c.o -MF CMakeFiles/cobitools3.dir/obi_lcs.c.o.d -o CMakeFiles/cobitools3.dir/obi_lcs.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_lcs.c" [ 11%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_str.c" [ 13%] Building C object CMakeFiles/cobitools3.dir/bloom.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/bloom.c.o -MF CMakeFiles/cobitools3.dir/bloom.c.o.d -o CMakeFiles/cobitools3.dir/bloom.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/bloom.c" [ 15%] Building C object CMakeFiles/cobitools3.dir/build_reference_db.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/build_reference_db.c.o -MF CMakeFiles/cobitools3.dir/build_reference_db.c.o.d -o CMakeFiles/cobitools3.dir/build_reference_db.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/build_reference_db.c" [ 17%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_array.c" [ 19%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_idx.c" [ 21%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_bool.c" [ 23%] Building C object CMakeFiles/cobitools3.dir/libjson/json_utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -MF CMakeFiles/cobitools3.dir/libjson/json_utils.c.o.d -o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/json_utils.c" [ 25%] Building C object CMakeFiles/cobitools3.dir/libjson/cJSON.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -MF CMakeFiles/cobitools3.dir/libjson/cJSON.c.o.d -o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libjson/cJSON.c" [ 26%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_blob.c" [ 28%] Building C object CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -MF CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o.d -o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/dna_seq_indexer.c" [ 30%] Building C object CMakeFiles/cobitools3.dir/obi_ecotag.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecotag.c.o -MF CMakeFiles/cobitools3.dir/obi_ecotag.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecotag.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecotag.c" [ 32%] Building C object CMakeFiles/cobitools3.dir/encode.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/encode.c.o -MF CMakeFiles/cobitools3.dir/encode.c.o.d -o CMakeFiles/cobitools3.dir/encode.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/encode.c" [ 34%] Building C object CMakeFiles/cobitools3.dir/obiavl.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiavl.c.o -MF CMakeFiles/cobitools3.dir/obiavl.c.o.d -o CMakeFiles/cobitools3.dir/obiavl.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiavl.c" [ 36%] Building C object CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -MF CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o.d -o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/sse_banded_LCS_alignment.c" [ 38%] Building C object CMakeFiles/cobitools3.dir/kmer_similarity.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/kmer_similarity.c.o -MF CMakeFiles/cobitools3.dir/kmer_similarity.c.o.d -o CMakeFiles/cobitools3.dir/kmer_similarity.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/kmer_similarity.c" [ 40%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_qual.c" [ 42%] Building C object CMakeFiles/cobitools3.dir/obi_clean.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_clean.c.o -MF CMakeFiles/cobitools3.dir/obi_clean.c.o.d -o CMakeFiles/cobitools3.dir/obi_clean.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_clean.c" [ 44%] Building C object CMakeFiles/cobitools3.dir/utils.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/utils.c.o -MF CMakeFiles/cobitools3.dir/utils.c.o.d -o CMakeFiles/cobitools3.dir/utils.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/utils.c" [ 46%] Building C object CMakeFiles/cobitools3.dir/uint8_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/uint8_indexer.c.o -MF CMakeFiles/cobitools3.dir/uint8_indexer.c.o.d -o CMakeFiles/cobitools3.dir/uint8_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/uint8_indexer.c" [ 48%] Building C object CMakeFiles/cobitools3.dir/murmurhash2.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/murmurhash2.c.o -MF CMakeFiles/cobitools3.dir/murmurhash2.c.o.d -o CMakeFiles/cobitools3.dir/murmurhash2.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/murmurhash2.c" [ 50%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_char.c" [ 51%] Building C object CMakeFiles/cobitools3.dir/obiview.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiview.c.o -MF CMakeFiles/cobitools3.dir/obiview.c.o.d -o CMakeFiles/cobitools3.dir/obiview.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiview.c" [ 53%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_int.c" [ 55%] Building C object CMakeFiles/cobitools3.dir/linked_list.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/linked_list.c.o -MF CMakeFiles/cobitools3.dir/linked_list.c.o.d -o CMakeFiles/cobitools3.dir/linked_list.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/linked_list.c" [ 57%] Building C object CMakeFiles/cobitools3.dir/obiblob.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obiblob.c.o -MF CMakeFiles/cobitools3.dir/obiblob.c.o.d -o CMakeFiles/cobitools3.dir/obiblob.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obiblob.c" [ 59%] Building C object CMakeFiles/cobitools3.dir/hashtable.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/hashtable.c.o -MF CMakeFiles/cobitools3.dir/hashtable.c.o.d -o CMakeFiles/cobitools3.dir/hashtable.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/hashtable.c" [ 61%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn.c" [ 63%] Building C object CMakeFiles/cobitools3.dir/char_str_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/char_str_indexer.c.o -MF CMakeFiles/cobitools3.dir/char_str_indexer.c.o.d -o CMakeFiles/cobitools3.dir/char_str_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/char_str_indexer.c" [ 65%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_float.c" [ 67%] Building C object CMakeFiles/cobitools3.dir/upperband.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/upperband.c.o -MF CMakeFiles/cobitools3.dir/upperband.c.o.d -o CMakeFiles/cobitools3.dir/upperband.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/upperband.c" [ 69%] Building C object CMakeFiles/cobitools3.dir/crc64.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/crc64.c.o -MF CMakeFiles/cobitools3.dir/crc64.c.o.d -o CMakeFiles/cobitools3.dir/crc64.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/crc64.c" [ 71%] Building C object CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumn_seq.c" [ 73%] Building C object CMakeFiles/cobitools3.dir/obilittlebigman.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obilittlebigman.c.o -MF CMakeFiles/cobitools3.dir/obilittlebigman.c.o.d -o CMakeFiles/cobitools3.dir/obilittlebigman.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obilittlebigman.c" [ 75%] Building C object CMakeFiles/cobitools3.dir/obidmscolumndir.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -MF CMakeFiles/cobitools3.dir/obidmscolumndir.c.o.d -o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidmscolumndir.c" [ 76%] Building C object CMakeFiles/cobitools3.dir/obidms.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obidms.c.o -MF CMakeFiles/cobitools3.dir/obidms.c.o.d -o CMakeFiles/cobitools3.dir/obidms.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obidms.c" [ 78%] Building C object CMakeFiles/cobitools3.dir/obi_ecopcr.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -MF CMakeFiles/cobitools3.dir/obi_ecopcr.c.o.d -o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obi_ecopcr.c" [ 80%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libthermo/nnparams.c" [ 82%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoapat.c" [ 84%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/libstki.c" [ 86%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_search.c" [ 88%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/libapat/apat_parse.c" [ 90%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecodna.c" [ 92%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoMalloc.c" [ 94%] Building C object CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -MF CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o.d -o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/libecoPCR/ecoError.c" [ 96%] Building C object CMakeFiles/cobitools3.dir/obitypes.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/obitypes.c.o -MF CMakeFiles/cobitools3.dir/obitypes.c.o.d -o CMakeFiles/cobitools3.dir/obitypes.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/obitypes.c" [ 98%] Building C object CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/bin/cc -Dcobitools3_EXPORTS -I"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -fPIC -fopenmp -MD -MT CMakeFiles/cobitools3.dir/array_indexer.c.o -MF CMakeFiles/cobitools3.dir/array_indexer.c.o.d -o CMakeFiles/cobitools3.dir/array_indexer.c.o -c "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src/array_indexer.c" [100%] Linking C shared library libcobitools3.so /usr/bin/cmake -E cmake_link_script CMakeFiles/cobitools3.dir/link.txt --verbose=1 /usr/bin/cc -fPIC -O3 -w -I "src" -I "src/libecoPCR" -I "src/libjson" -O3 -DNDEBUG -Wl,--dependency-file,CMakeFiles/cobitools3.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libcobitools3.so -o libcobitools3.so CMakeFiles/cobitools3.dir/obisig.c.o CMakeFiles/cobitools3.dir/obierrno.c.o CMakeFiles/cobitools3.dir/obidms_taxonomy.c.o CMakeFiles/cobitools3.dir/obiblob_indexer.c.o CMakeFiles/cobitools3.dir/obi_lcs.c.o CMakeFiles/cobitools3.dir/obidmscolumn_str.c.o CMakeFiles/cobitools3.dir/bloom.c.o CMakeFiles/cobitools3.dir/build_reference_db.c.o CMakeFiles/cobitools3.dir/obidmscolumn_array.c.o CMakeFiles/cobitools3.dir/obidmscolumn_idx.c.o CMakeFiles/cobitools3.dir/obidmscolumn_bool.c.o CMakeFiles/cobitools3.dir/libjson/json_utils.c.o CMakeFiles/cobitools3.dir/libjson/cJSON.c.o CMakeFiles/cobitools3.dir/obidmscolumn_blob.c.o CMakeFiles/cobitools3.dir/dna_seq_indexer.c.o CMakeFiles/cobitools3.dir/obi_ecotag.c.o CMakeFiles/cobitools3.dir/encode.c.o CMakeFiles/cobitools3.dir/obiavl.c.o CMakeFiles/cobitools3.dir/sse_banded_LCS_alignment.c.o CMakeFiles/cobitools3.dir/kmer_similarity.c.o CMakeFiles/cobitools3.dir/obidmscolumn_qual.c.o CMakeFiles/cobitools3.dir/obi_clean.c.o CMakeFiles/cobitools3.dir/utils.c.o CMakeFiles/cobitools3.dir/uint8_indexer.c.o CMakeFiles/cobitools3.dir/murmurhash2.c.o CMakeFiles/cobitools3.dir/obidmscolumn_char.c.o CMakeFiles/cobitools3.dir/obiview.c.o CMakeFiles/cobitools3.dir/obidmscolumn_int.c.o CMakeFiles/cobitools3.dir/linked_list.c.o CMakeFiles/cobitools3.dir/obiblob.c.o CMakeFiles/cobitools3.dir/hashtable.c.o CMakeFiles/cobitools3.dir/obidmscolumn.c.o CMakeFiles/cobitools3.dir/char_str_indexer.c.o CMakeFiles/cobitools3.dir/obidmscolumn_float.c.o CMakeFiles/cobitools3.dir/upperband.c.o CMakeFiles/cobitools3.dir/crc64.c.o CMakeFiles/cobitools3.dir/obidmscolumn_seq.c.o CMakeFiles/cobitools3.dir/obilittlebigman.c.o CMakeFiles/cobitools3.dir/obidmscolumndir.c.o CMakeFiles/cobitools3.dir/obidms.c.o CMakeFiles/cobitools3.dir/obi_ecopcr.c.o CMakeFiles/cobitools3.dir/libecoPCR/libthermo/nnparams.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoapat.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/libstki.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_search.c.o CMakeFiles/cobitools3.dir/libecoPCR/libapat/apat_parse.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecodna.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoMalloc.c.o CMakeFiles/cobitools3.dir/libecoPCR/ecoError.c.o CMakeFiles/cobitools3.dir/obitypes.c.o CMakeFiles/cobitools3.dir/array_indexer.c.o /usr/lib/gcc/aarch64-linux-gnu/14/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 copying python/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers copying python/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri copying python/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers copying python/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign copying python/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format copying python/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files copying python/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms copying python/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view copying python/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view copying python/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo copying python/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column copying python/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column copying python/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi copying python/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands copying python/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps copying python/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups copying python/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups running build_ext building 'obitools3.utils' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3 aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/utils.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/utils.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.writers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/writers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/writers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.uri.decode' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/uri/decode.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/uri/decode.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.universal' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/universal.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/universal.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.tab' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.genbank' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/genbank.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/genbank.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl_genbank_features' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl_genbank_features.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl_genbank_features.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.parsers.embl' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/parsers/embl.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/parsers/embl.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.shifted_ali' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/shifted_ali.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/shifted_ali.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign.apat_pattern' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/apat_pattern.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/apat_pattern.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._solexapairend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_solexapairend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_solexapairend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._rassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_rassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_rassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsrassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsrassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsrassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._qsassemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_qsassemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_qsassemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._nws' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_nws.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_nws.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgapfm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgapfm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgapfm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._freeendgap' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_freeendgap.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_freeendgap.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._dynamic' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_dynamic.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_dynamic.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.libalign._assemble' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/libalign/_assemble.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/libalign/_assemble.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.tab' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/format aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/tab.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/tab.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.header' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/header.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/header.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fastq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fastq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fastq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.format.fasta' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/format/fasta.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/format/fasta.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.universalopener' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/files aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/universalopener.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/universalopener.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.uncompress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/uncompress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/uncompress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.files.linebuffer' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/files/linebuffer.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/files/linebuffer.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.object' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/object.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/object.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.obiseq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/obiseq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/obiseq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.view' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/view.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/view.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.view.typed_view.view_NUC_SEQS' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/view/typed_view/view_NUC_SEQS.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.taxo.taxo' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/taxo/taxo.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/taxo/taxo.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column_idx' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column_idx.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column_idx.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.column' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/column.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/column.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.str' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/str.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/str.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.seq' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/seq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/seq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.qual' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/qual.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/qual.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.int' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/int.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/int.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.float' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/float.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/float.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.char' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/char.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/char.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.dms.column.typed_column.bool' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/dms/column/typed_column/bool.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/dms/column/typed_column/bool.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.uniq' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/uniq.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/uniq.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.test' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/test.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/test.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.taxonomy' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/taxonomy.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/taxonomy.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.tail' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/tail.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/tail.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.stats' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/stats.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/stats.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.split' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/split.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/split.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.sort' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/sort.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/sort.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.rm' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/rm.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/rm.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ngsfilter' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ngsfilter.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ngsfilter.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ls' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ls.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ls.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.less' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/less.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/less.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.import' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/import.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/import.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.history' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/history.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/history.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.head' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/head.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/head.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.grep' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/grep.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/grep.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.export' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/export.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/export.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecotag' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecotag.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecotag.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.ecopcr' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/ecopcr.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/ecopcr.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.count' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/count.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/count.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean_dms' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean_dms.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean_dms.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.clean' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/clean.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/clean.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.cat' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/cat.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/cat.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.build_ref_db' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/build_ref_db.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/build_ref_db.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.annotate' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/annotate.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/annotate.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.alignpairedend' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/alignpairedend.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/alignpairedend.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.align' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/align.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/align.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.commands.addtaxids' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/commands/addtaxids.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/commands/addtaxids.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.temp' extension creating build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/temp.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/temp.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.progress' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/progress.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/progress.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.logging' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/logging.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/logging.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.config' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/config.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/config.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.command' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/command.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/command.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg building 'obitools3.apps.arguments' extension aarch64-linux-gnu-gcc -fno-strict-overflow -Wsign-compare -DNDEBUG -g -O2 -Wall -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -Isrc -Isrc/libecoPCR -Isrc/libjson -I/usr/include/python3.12 -c build/python/obitools3/apps/arguments.c -o build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -w -fPIC aarch64-linux-gnu-gcc -shared -Wl,-O1 -Wl,-Bsymbolic-functions -Wl,-z,relro -g -fwrapv -O2 -Wl,-z,relro -O3 -w -I src -I src/libecoPCR -I src/libjson -Wdate-time -D_FORTIFY_SOURCE=2 build/temp.linux-aarch64-cpython-312/build/python/obitools3/apps/arguments.o -L/usr/lib/python3/dist-packages -L/usr/lib/aarch64-linux-gnu -Wl,--enable-new-dtags,-rpath,/usr/lib/python3/dist-packages -lcobitools3 -o /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -Wl,-rpath,/usr/lib/python3/dist-packages -L/build/reproducible-path/obitools-3.0.1~b26+dfsg running build_scripts creating build/scripts-3.12 copying and adjusting scripts/obi -> build/scripts-3.12 changing mode of build/scripts-3.12/obi from 644 to 755 dh_auto_test -O--buildsystem=pybuild create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' Traceback (most recent call last): File "/usr/bin/pybuild", line 604, in main(cfg) File "/usr/bin/pybuild", line 375, in main iversions = build_sorted(versions, impl=ipreter.impl) ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 449, in build_sorted default_ver = default(impl) ^^^^^^^^^^^^^ File "/usr/share/dh-python/dhpython/version.py", line 380, in default raise ValueError("interpreter implementation not supported: %r" % impl) ValueError: interpreter implementation not supported: '' PYTHONPATH= \ http_proxy='127.0.0.1:9' \ dh_auto_install I: pybuild base:311: /usr/bin/python3 setup.py install --root '/build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools' running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:66: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_clib Build the build/cobject directory Run CMake CMake Deprecation Warning at CMakeLists.txt:1 (cmake_minimum_required): Compatibility with CMake < 3.10 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring done (0.0s) -- Generating done (0.0s) -- Build files have been written to: /build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject Compile the shared C library make[2]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -S"/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" -B"/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/depend make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' cd "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/src" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject" "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles/cobitools3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make -f CMakeFiles/cobitools3.dir/build.make CMakeFiles/cobitools3.dir/build make[4]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[4]: Nothing to be done for 'CMakeFiles/cobitools3.dir/build'. make[4]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' [100%] Built target cobitools3 make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject/CMakeFiles" 0 make -f CMakeFiles/Makefile2 preinstall make[3]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' make[3]: Nothing to be done for 'preinstall'. make[3]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Up-to-date: /build/reproducible-path/obitools-3.0.1~b26+dfsg/libcobitools3.so make[2]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg/build/cobject' running build_py running build_ext running build_scripts running install_lib creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/utils.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/arguments.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/command.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/config.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/logging.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/progress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/temp.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/optiongroups/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/apps/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/addtaxids.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/alignpairedend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/annotate.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/cat.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/count.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/export.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/grep.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/head.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/history.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/less.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ls.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/rm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/sort.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/split.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/stats.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/tail.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/taxonomy.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/test.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/uniq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/commands/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/object.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/capi/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/typed_column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/column/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/taxo/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/typed_view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/view/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/dms/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/linebuffer.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/uncompress.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/universalopener.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/files/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/format/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_assemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_dynamic.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgap.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_freeendgapfm.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_nws.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_qsrassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_rassemble.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/_solexapairend.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/libalign/solexapairend.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/embl_genbank_features.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/genbank.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/header.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/ngsfilter.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/universal.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/parsers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/uri/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fasta.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/fastq.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/tab.cpython-312-aarch64-linux-gnu.so -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/writers/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/__init__.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 copying /build/reproducible-path/obitools-3.0.1~b26+dfsg/.pybuild/cpython3_3.12_obitools/build/obitools3/version.py -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3 byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/optiongroups/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/apps/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/commands/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/capi/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/typed_column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/column/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/taxo/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/typed_view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/view/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/dms/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/files/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/format/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/libalign/solexapairend.py to solexapairend.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/parsers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/uri/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/writers/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/__init__.py to __init__.cpython-312.pyc byte-compiling /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/obitools3/version.py to version.cpython-312.pyc running install_egg_info running egg_info creating python/OBITools3.egg-info writing python/OBITools3.egg-info/PKG-INFO writing dependency_links to python/OBITools3.egg-info/dependency_links.txt writing top-level names to python/OBITools3.egg-info/top_level.txt writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest file 'python/OBITools3.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.c' under directory 'python' warning: no files found matching '*.h' under directory 'python' warning: no files found matching '*.txt' under directory 'doc/sphinx/source' warning: no files found matching '*.rst' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/source' warning: no files found matching '*.py' under directory 'doc/sphinx/sphinxext' warning: no files found matching 'doc/sphinx/Makefile' warning: no files found matching 'doc/sphinx/Doxyfile' adding license file 'LICENSE' writing manifest file 'python/OBITools3.egg-info/SOURCES.txt' Copying python/OBITools3.egg-info to /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/lib/python3.12/dist-packages/OBITools3-3.0.1b26.egg-info Skipping SOURCES.txt running install_scripts creating /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin copying build/scripts-3.12/obi -> /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin changing mode of /build/reproducible-path/obitools-3.0.1~b26+dfsg/debian/obitools/usr/bin/obi to 755 make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_install -O--buildsystem=pybuild dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild debian/rules override_dh_installman make[1]: Entering directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_installman find debian -name "ecoPCR.1*" -delete find debian -name "ecofind.1*" -delete make[1]: Leaving directory '/build/reproducible-path/obitools-3.0.1~b26+dfsg' dh_python3 -O--buildsystem=pybuild I: dh_python3 fs:421: renaming libcobitools3.so to libcobitools3.cpython-312-aarch64-linux-gnu.so dh_installsystemduser -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_dwz -a -O--buildsystem=pybuild dwz: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so: .debug_info section not present dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/utils.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol log: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2054746 and its subdirectories I: Current time: Thu Nov 21 19:42:46 +14 2024 I: pbuilder-time-stamp: 1732167766 + false + set +x Thu Nov 21 05:42:46 UTC 2024 I: Signing ./b2/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo as obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc Thu Nov 21 05:42:46 UTC 2024 I: Signed ./b2/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo as ./b2/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc Thu Nov 21 05:42:46 UTC 2024 - build #2 for obitools/unstable/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Thu Nov 21 05:42:46 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Ri2uDLrz, removing. /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j: total 252 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 05:31 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 05:42 b2 -rw-r--r-- 1 jenkins jenkins 2081 Nov 21 00:13 obitools_3.0.1~b26+dfsg-2.dsc -rw------- 1 jenkins jenkins 237761 Nov 21 05:31 rbuildlog.cl1tgmO /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1: total 18496 -rw-r--r-- 1 jenkins jenkins 234213 Nov 21 05:31 build.log -rw-r--r-- 1 jenkins jenkins 16684132 Nov 21 05:31 obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 14336 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2081 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8632 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9514 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1553 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1932412 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1391 Nov 21 05:31 obitools_3.0.1~b26+dfsg-2_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2: total 18468 -rw-r--r-- 1 jenkins jenkins 236155 Nov 21 05:42 build.log -rw-r--r-- 1 jenkins jenkins 16684132 Nov 21 05:42 obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 14336 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2081 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2.dsc -rw-r--r-- 1 jenkins jenkins 8632 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 9514 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1553 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1932412 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2_arm64.deb -rw-r--r-- 1 jenkins jenkins 1391 Nov 21 05:42 obitools_3.0.1~b26+dfsg-2_source.changes Thu Nov 21 05:42:47 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Nov 21 05:42:48 UTC 2024 I: obitools_3.0.1~b26+dfsg-2_arm64.changes: Format: 1.8 Date: Thu, 21 Nov 2024 01:09:03 +0100 Source: obitools Binary: obitools obitools-dbgsym Architecture: arm64 Version: 3.0.1~b26+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: obitools - programs to analyze NGS data in a DNA metabarcoding context Changes: obitools (3.0.1~b26+dfsg-2) unstable; urgency=medium . * Team upload. * d/control: new homepage * d/rules: don't try to run any tests, there aren't any. * Fixed non-root builds. Checksums-Sha1: 25717ef56b9402b539c87de2053fbb74c3be1110 16684132 obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb f3bae17d42db6e9d3b8fdbf372bbd1b6ad546e83 8632 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo 60bec8abad9d33836dac6c428d8ea6aa96e60d3f 1932412 obitools_3.0.1~b26+dfsg-2_arm64.deb Checksums-Sha256: 1842c4f24a370f2897b9409ee2b90702e26f21f9c2859d8c7a0ed9abebd037c2 16684132 obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb b2670a3f2966b0b7f2a00d923593dea653c571cadd0d0294484d0be3853a934c 8632 obitools_3.0.1~b26+dfsg-2_arm64.buildinfo 0ffd255b2538280e733194fcfae5aa7527958339b88e6663a03e194d8307f3ee 1932412 obitools_3.0.1~b26+dfsg-2_arm64.deb Files: bc0708fcb61cee139fbd00105c504c69 16684132 debug optional obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb 05a11dfe722d898e21c52a02f843a974 8632 science optional obitools_3.0.1~b26+dfsg-2_arm64.buildinfo a09ace8d0c0b7d75f7ce2520890505e5 1932412 science optional obitools_3.0.1~b26+dfsg-2_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/obitools_3.0.1~b26+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/obitools_3.0.1~b26+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/obitools_3.0.1~b26+dfsg-1.build1.log.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-21 05:31:14.947118584 +0000 +++ b2/build.log 2024-11-21 05:42:47.051788252 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Nov 20 17:12:17 -12 2024 -I: pbuilder-time-stamp: 1732165937 +I: Current time: Thu Nov 21 19:31:18 +14 2024 +I: pbuilder-time-stamp: 1732167078 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying any_arch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D01_modify_environment starting +debug: Running on codethink02-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 21 05:31 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='676d97ce0da8491f94f63aace4c041ce' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3161727' - PS1='# ' - PS2='> ' + INVOCATION_ID=40fd4dbb23344cf1a489f6ea0f331ec3 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2054746 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_olLn --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1 --logfile b1/build.log obitools_3.0.1~b26+dfsg-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/pbuilderrc_3lsc --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2 --logfile b2/build.log obitools_3.0.1~b26+dfsg-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3161727/tmp/hooks/D02_print_environment finished +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -255,7 +287,7 @@ Get: 131 http://deb.debian.org/debian unstable/main arm64 python3-snowballstemmer all 2.2.0-4 [58.0 kB] Get: 132 http://deb.debian.org/debian unstable/main arm64 sphinx-common all 7.4.7-4 [731 kB] Get: 133 http://deb.debian.org/debian unstable/main arm64 python3-sphinx all 7.4.7-4 [588 kB] -Fetched 68.3 MB in 1s (84.5 MB/s) +Fetched 68.3 MB in 0s (200 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) @@ -694,8 +726,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Thu Nov 21 05:13:03 UTC 2024. -Universal Time is now: Thu Nov 21 05:13:03 UTC 2024. +Local time is now: Thu Nov 21 05:31:43 UTC 2024. +Universal Time is now: Thu Nov 21 05:31:43 UTC 2024. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20220109.1) ... @@ -826,7 +858,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-2_source.changes +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/obitools-3.0.1~b26+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../obitools_3.0.1~b26+dfsg-2_source.changes dpkg-buildpackage: info: source package obitools dpkg-buildpackage: info: source version 3.0.1~b26+dfsg-2 dpkg-buildpackage: info: source distribution unstable @@ -1036,7 +1072,7 @@ -- Detecting C compile features - done -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") --- Configuring done (1.4s) +-- Configuring done (1.0s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: @@ -1740,41 +1776,41 @@ dh_strip -a -O--buildsystem=pybuild dh_makeshlibs -a -O--buildsystem=pybuild dh_shlibdeps -a -O--buildsystem=pybuild -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/bool.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean_dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/taxo/taxo.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/dms.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/column_idx.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/str.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/shifted_ali.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/char.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/float.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/obiseq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/utils.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/align.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/libalign/apat_pattern.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/clean.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecopcr.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol log10: it's probably a plugin +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/typed_view/view_NUC_SEQS.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: debian/obitools/usr/lib/python3/dist-packages/libcobitools3.cpython-312-aarch64-linux-gnu.so contains an unresolvable reference to symbol log: it's probably a plugin dpkg-shlibdeps: warning: 1 similar warning has been skipped (use -v to see it) -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/qual.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/import.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/seq.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/view/view.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') -dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/build_ref_db.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/commands/ecotag.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/dms/column/typed_column/int.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') +dpkg-shlibdeps: warning: cannot find library libcobitools3.so needed by debian/obitools/usr/lib/python3/dist-packages/obitools3/uri/decode.cpython-312-aarch64-linux-gnu.so (ELF format: 'elf64-littleaarch64' abi: 'ELF:64:l:arm64:0'; RPATH: '/usr/lib/python3/dist-packages') dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dpkg-gencontrol: warning: Depends field of package obitools: substitution variable ${sphinxdoc:Depends} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild -dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-deb: building package 'obitools-dbgsym' in '../obitools-dbgsym_3.0.1~b26+dfsg-2_arm64.deb'. +dpkg-deb: building package 'obitools' in '../obitools_3.0.1~b26+dfsg-2_arm64.deb'. dpkg-genbuildinfo --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.buildinfo dpkg-genchanges --build=binary -O../obitools_3.0.1~b26+dfsg-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1782,12 +1818,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2054746/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3161727 and its subdirectories -I: Current time: Wed Nov 20 17:31:13 -12 2024 -I: pbuilder-time-stamp: 1732167073 +I: removing directory /srv/workspace/pbuilder/2054746 and its subdirectories +I: Current time: Thu Nov 21 19:42:46 +14 2024 +I: pbuilder-time-stamp: 1732167766 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/obitools_3.0.1~b26+dfsg-2.diff: 82.3% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/obitools_3.0.1~b26+dfsg-2.diff.gz b2/build.log: 91.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 91.2% -- replaced with stdout Thu Nov 21 05:42:49 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_obitools_unstable_arm64_1732167769 + touch /var/log/reproducible-builds/diffoscope_stamp_obitools_unstable_arm64_1732167769 + RESULT=0 + systemd-run '--description=diffoscope on obitools/3.0.1~b26+dfsg-2 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_22-40349 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j --run-session -c jenkins-reproducible-unstable-diffoscope-0c63ceed-cb2e-41b6-b974-106d874ea4a8 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/dbd-tmp-7Wtp3JO ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1/obitools_3.0.1~b26+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2/obitools_3.0.1~b26+dfsg-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_22-40349.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/obitools_3.0.1~b26+dfsg-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b1/obitools_3.0.1~b26+dfsg-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.DE5rRL4j/b2/obitools_3.0.1~b26+dfsg-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.498s) 0.498s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.175s) 0.175s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 802ms CPU time consumed: 803ms _ _ _ _ ___ | |__ (_) |_ ___ ___ | |___ / _ \| '_ \| | __/ _ \ / _ \| / __| | (_) | |_) | | || (_) | (_) | \__ \ \___/|_.__/|_|\__\___/ \___/|_|___/ Thu Nov 21 05:42:50 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Thu Nov 21 05:42:50 UTC 2024 I: obitools from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-21 05:42:50] INFO: Starting at 2024-11-21 05:42:50.915780 [2024-11-21 05:42:50] INFO: Generating the pages of 1 package(s) [2024-11-21 05:42:51] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/obitools_3.0.1~b26+dfsg-2_amd64.buildinfo [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/obitools_3.0.1~b26+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/obitools_3.0.1~b26+dfsg-2.diff.gz is missing [2024-11-21 05:42:51] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/obitools didn't produce a buildlog, even though it has been built. [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/obitools_1.2.13+dfsg-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/obitools_1.2.13+dfsg-9.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/obitools_3.0.1~b26+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/obitools_3.0.1~b26+dfsg-1.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:51] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:51] INFO: Finished at 2024-11-21 05:42:51.236920, took: 0:00:00.321144 Thu Nov 21 05:42:51 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/obitools.html Thu Nov 21 05:42:51 UTC 2024 I: Submitting .buildinfo files to external archives: Thu Nov 21 05:42:51 UTC 2024 I: Submitting 12K b1/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/f3bae17d42db6e9d3b8fdbf372bbd1b6ad546e83/obitools_3.0.1~b26+dfsg-2_arm64 Thu Nov 21 05:42:52 UTC 2024 I: Submitting 12K b2/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc https://buildinfo.debian.net/53f48a1420deb34451806bcdfe0b36d4e2662797/obitools_3.0.1~b26+dfsg-2_arm64 Thu Nov 21 05:42:52 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Thu Nov 21 05:42:52 UTC 2024 I: Done submitting .buildinfo files. Thu Nov 21 05:42:52 UTC 2024 I: Removing signed obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc files: removed './b1/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc' removed './b2/obitools_3.0.1~b26+dfsg-2_arm64.buildinfo.asc' 1732167772 arm64 unstable obitools Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/obitools_3.0.1~b26+dfsg-2.rbuild.log: 90.2% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/obitools_3.0.1~b26+dfsg-2.rbuild.log.gz [2024-11-21 05:42:53] INFO: Starting at 2024-11-21 05:42:53.175266 [2024-11-21 05:42:53] INFO: Generating the pages of 1 package(s) [2024-11-21 05:42:53] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/amd64/obitools_3.0.1~b26+dfsg-2_amd64.buildinfo [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/amd64/obitools_3.0.1~b26+dfsg-2.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/amd64/obitools_3.0.1~b26+dfsg-2.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/obitools_1.2.13+dfsg-9.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/obitools_1.2.13+dfsg-9.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/obitools_3.0.1~b26+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/obitools_3.0.1~b26+dfsg-1.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/arm64/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/arm64/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/i386/obitools_1.2.13+dfsg-5.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/i386/obitools_1.2.13+dfsg-5.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/arm64/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/arm64/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/armhf/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/armhf/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:53] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bullseye/i386/obitools_1.2.13+dfsg-3.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bullseye/i386/obitools_1.2.13+dfsg-3.diff.gz is missing [2024-11-21 05:42:53] INFO: Finished at 2024-11-21 05:42:53.482348, took: 0:00:00.307087 All cleanup done. Thu Nov 21 05:42:53 UTC 2024 - total duration: 0h 30m 45s. Thu Nov 21 05:42:53 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-s6uma27H, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 30min 47.903s CPU time consumed: 7.307s