Running as unit: rb-build-arm64_22-40560.service ==================================================================================== Thu Nov 21 23:01:35 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_22) on jenkins, called using "codethink04-arm64 codethink02-arm64" as arguments. Thu Nov 21 23:01:35 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-GFh5RENS" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 23:01:35 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Nov 21 23:01:35 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-j82JsD' Thu Nov 21 23:01:36 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Nov 21 23:01:36 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-JTr9s6' ok, let's check if delly is building anywhere yet… ok, delly is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of delly in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink02-arm64.debian.net. ============================================================================= Thu Nov 21 23:01:49 UTC 2024 I: starting to build delly/trixie/arm64 on jenkins on '2024-11-21 23:01' Thu Nov 21 23:01:49 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/40560/console.log 1732230109 arm64 trixie delly Thu Nov 21 23:01:49 UTC 2024 I: Downloading source for trixie/delly=1.1.8-1 --2024-11-21 23:01:49-- http://deb.debian.org/debian/pool/main/d/delly/delly_1.1.8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2110 (2.1K) [text/prs.lines.tag] Saving to: ‘delly_1.1.8-1.dsc’ 0K .. 100% 317M=0s 2024-11-21 23:01:49 (317 MB/s) - ‘delly_1.1.8-1.dsc’ saved [2110/2110] --2024-11-21 23:01:49-- http://deb.debian.org/debian/pool/main/d/delly/delly_1.1.8-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2110 (2.1K) [text/prs.lines.tag] Saving to: ‘delly_1.1.8-1.dsc’ 0K .. 100% 317M=0s 2024-11-21 23:01:49 (317 MB/s) - ‘delly_1.1.8-1.dsc’ saved [2110/2110] Thu Nov 21 23:01:51 UTC 2024 I: delly_1.1.8-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: delly Binary: delly Architecture: any Version: 1.1.8-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller Homepage: https://github.com/dellytools/delly Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/delly Vcs-Git: https://salsa.debian.org/med-team/delly.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper Package-List: delly deb science optional arch=any Checksums-Sha1: cf08c2c461916e0c2ed3e0e156a133ed141ac4db 3743720 delly_1.1.8.orig.tar.xz 85b866350db703acd3f9193450034d51a1fb790d 5244 delly_1.1.8-1.debian.tar.xz Checksums-Sha256: 011e6a2a1e2bfcddd3e909ab38974b4220b69f308ef6049420e12112fe967bd3 3743720 delly_1.1.8.orig.tar.xz b3feab4ff9e3654487aafb8836a29703a40ac172d1bf2b343464a3738139e48f 5244 delly_1.1.8-1.debian.tar.xz Files: d803b6a94d7f64c179b7feda0f25679c 3743720 delly_1.1.8.orig.tar.xz d4a36fee1946cb9cca003d1109ccbf5c 5244 delly_1.1.8-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJDBAEBCgAtFiEELWW8HrlmWm6X+XMKs/WUUoUhnh8FAmUoCJkPHHJtYkBkZWJp YW4ub3JnAAoJELP1lFKFIZ4fL4kP/0AvXn4QPD0jbfn8GtfGqCPaQ2SxUcZe0JCM DNuzWfZ+kfadXNSpr+BMwZijLmNpgPsY+RpXrt5etweGmaoii/TBlfBgVQc6Uq2t uOj0lDriTLu3Jnm6iCzWNhFpj6DWvBn6ZYiIiUOANrBAZtNqQLsWjrxVvmLhFMFp sYk+Xj9T5OX/RcuQXfbXhjgT8HPGl21CwVzl84sX850HAizYKDqwKd669m2pLduf OHf+0w2JmyvkzmeZM0i75MOVSm9hUeO7nvzY6dmxsAosv/d8FDbzOi+ZI2YQqG5e 5By1kFWRLbSmSLUJ5oDbxFHfOxdfeePVOZRU/aqV+aN6X6MMajnkoK/W2n/NPzRi FeYAofznwdSMwtDpmTVQPLzs9u4bsO9xHKvmR1DIfIqtogBeA1XGhJJe+Rb8hS6x zu72dPgP0F//NDrO4SIlrBUg3Z5pMG1ANrZ+oHCHnMVLGV+iy6cewkbYcgcq9E1k uaXz+3GPqZIn9dbdURtXwSQBzm+ONDLZWpMbljZ5aILkOWMjqilVJtZ/s/29n5jW 2aswV7n0HXmmX2Z/w4tZ/HDffJFtr3DnwDGn4QEtrBpGPdn98bmB8qmVLJGWK/3/ MuTbw3rsOrtx7+zV6nHB7BEQ0G0YYl5wwEH2nYLCee8Wg3bFB5CLrPenNwSvGwjr IGXh7ei3 =h6bi -----END PGP SIGNATURE----- Thu Nov 21 23:01:52 UTC 2024 I: Checking whether the package is not for us Thu Nov 21 23:01:52 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Thu Nov 21 23:01:52 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Nov 21 23:01:52 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Nov 21 23:01:52 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-TkDUhV' ==================================================================================== Thu Nov 21 23:01:53 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 delly trixie /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW 1.1.8-1" as arguments. Thu Nov 21 23:01:53 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gKviBUfD" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 23:01:53 UTC 2024 I: Downloading source for trixie/delly=1.1.8-1 Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (70.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (70.9 MB/s) Download complete and in download only mode ============================================================================= Building delly in trixie on arm64 on codethink04-arm64 now. Date: Thu Nov 21 23:01:53 GMT 2024 Date UTC: Thu Nov 21 23:01:53 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 11:01:54 -12 2024 I: pbuilder-time-stamp: 1732230114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_1.1.8-1.dsc] I: copying [./delly_1.1.8.orig.tar.xz] I: copying [./delly_1.1.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 12 14:54:17 2023 gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.8 dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1698084/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='64078d51d0e94b488f218415e1aff441' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1698084' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_RbD0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1 --logfile b1/build.log delly_1.1.8-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1698084/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 chrpath arm64 0.18-1 [13.2 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2 [233 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2 [234 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2 [325 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2 [373 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2 [239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2 [273 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2 [292 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2 [335 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2 [261 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2 [331 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2 [369 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Fetched 62.0 MB in 0s (199 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package chrpath. Preparing to unpack .../015-chrpath_0.18-1_arm64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../026-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../032-icu-devtools_72.1-5+b1_arm64.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../033-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../034-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../035-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../036-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../037-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../038-libgssrpc4t64_1.21.3-3_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../039-libkadm5clnt-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../040-libkdb5-10t64_1.21.3-3_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../041-libkadm5srv-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../042-krb5-multidev_1.21.3-3_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-3) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../043-libboost1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83.0:arm64. Preparing to unpack .../044-libboost-atomic1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83-dev:arm64. Preparing to unpack .../045-libboost-atomic1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83.0:arm64. Preparing to unpack .../046-libboost-date-time1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83.0:arm64. Preparing to unpack .../047-libboost-serialization1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83-dev:arm64. Preparing to unpack .../048-libboost-serialization1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-serialization1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83-dev:arm64. Preparing to unpack .../049-libboost-date-time1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time-dev:arm64. Preparing to unpack .../050-libboost-date-time-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-filesystem1.83.0:arm64. Preparing to unpack .../051-libboost-filesystem1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83.0:arm64. Preparing to unpack .../052-libboost-system1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83-dev:arm64. Preparing to unpack .../053-libboost-system1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem1.83-dev:arm64. Preparing to unpack .../054-libboost-filesystem1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem-dev:arm64. Preparing to unpack .../055-libboost-filesystem-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-regex1.83.0:arm64. Preparing to unpack .../056-libboost-regex1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-regex1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../057-libicu-dev_72.1-5+b1_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-5+b1) ... Selecting previously unselected package libboost-regex1.83-dev:arm64. 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/delly-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_1.1.8-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j12 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/delly-1.1.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from src/delly.cpp:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:521:16, inlined from 'void boost::allocator_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/allocator_access.hpp:737:35, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:76:33, inlined from 'void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:399:26, inlined from 'int torali::asmode(int, char**)' at src/asmode.h:559:17: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function 'int torali::asmode(int, char**)': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: '' declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:166:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: '' declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]' at src/pangenome.h:772:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: '' declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' chrpath -d src/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' # avoiding redundant compile of delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_arm64.deb'. dpkg-deb: building package 'delly' in '../delly_1.1.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1698084 and its subdirectories I: Current time: Thu Nov 21 11:03:57 -12 2024 I: pbuilder-time-stamp: 1732230237 Thu Nov 21 23:03:57 UTC 2024 I: Signing ./b1/delly_1.1.8-1_arm64.buildinfo as delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:03:57 UTC 2024 I: Signed ./b1/delly_1.1.8-1_arm64.buildinfo as ./b1/delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:03:57 UTC 2024 - build #1 for delly/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Nov 21 23:03:57 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-gKviBUfD, removing. /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:04 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:01 b2 -rw-r--r-- 1 jenkins jenkins 2110 Oct 12 2023 delly_1.1.8-1.dsc -rw------- 1 jenkins jenkins 3202 Nov 21 23:01 rbuildlog.1AofC6o /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1: total 10180 -rw-r--r-- 1 jenkins jenkins 65557 Nov 21 23:03 build.log -rw-r--r-- 1 jenkins jenkins 6202100 Nov 21 23:03 delly-dbgsym_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 5244 Nov 21 23:03 delly_1.1.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2110 Nov 21 23:03 delly_1.1.8-1.dsc -rw-r--r-- 1 jenkins jenkins 7996 Nov 21 23:03 delly_1.1.8-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8878 Nov 21 23:03 delly_1.1.8-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Nov 21 23:03 delly_1.1.8-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 363928 Nov 21 23:03 delly_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1461 Nov 21 23:03 delly_1.1.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 3743720 Nov 21 23:04 delly_1.1.8.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b2: total 0 Thu Nov 21 23:04:00 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 11:01:54 -12 2024 I: pbuilder-time-stamp: 1732230114 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_1.1.8-1.dsc] I: copying [./delly_1.1.8.orig.tar.xz] I: copying [./delly_1.1.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 12 14:54:17 2023 gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.8 dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1698084/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='64078d51d0e94b488f218415e1aff441' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1698084' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_RbD0 --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1 --logfile b1/build.log delly_1.1.8-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1698084/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 chrpath arm64 0.18-1 [13.2 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2 [233 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2 [234 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2 [325 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2 [373 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2 [239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2 [273 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2 [292 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2 [335 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2 [261 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2 [331 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2 [369 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Fetched 62.0 MB in 0s (199 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package chrpath. Preparing to unpack .../015-chrpath_0.18-1_arm64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. 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Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:arm64 (1.21.3-3) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-3) ... Setting up libkdb5-10t64:arm64 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up krb5-multidev:arm64 (1.21.3-3) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.0-1) ... Setting up libhts-dev:arm64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/delly-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_1.1.8-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j12 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/delly-1.1.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from src/delly.cpp:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:521:16, inlined from 'void boost::allocator_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/allocator_access.hpp:737:35, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:76:33, inlined from 'void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:399:26, inlined from 'int torali::asmode(int, char**)' at src/asmode.h:559:17: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function 'int torali::asmode(int, char**)': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: '' declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:166:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: '' declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]' at src/pangenome.h:772:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: '' declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' chrpath -d src/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' # avoiding redundant compile of delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_arm64.deb'. dpkg-deb: building package 'delly' in '../delly_1.1.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1698084 and its subdirectories I: Current time: Thu Nov 21 11:03:57 -12 2024 I: pbuilder-time-stamp: 1732230237 Thu Nov 21 23:04:01 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink02-arm64.debian.net. Thu Nov 21 23:04:01 UTC 2024 I: Preparing to do remote build '2' on codethink02-arm64.debian.net. Thu Nov 21 23:04:01 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink02-arm64.debian.net is marked as down. Thu Nov 21 23:04:01 UTC 2024 - checking via ssh if codethink02-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CNbVEt' ==================================================================================== Thu Nov 21 23:04:02 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink02-arm64, called using "2 delly trixie /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW 1.1.8-1" as arguments. Thu Nov 21 23:04:02 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-nMY6BLa3" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 23:04:02 UTC 2024 I: Downloading source for trixie/delly=1.1.8-1 Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (99.1 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (99.1 MB/s) Download complete and in download only mode ============================================================================= Re-Building delly in trixie on arm64 on codethink02-arm64 now. Date: Thu Nov 21 23:04:03 GMT 2024 Date UTC: Thu Nov 21 23:04:03 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_GCqe + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' delly = debian-installer -o delly = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' delly = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_GCqe --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b2 --logfile b2/build.log delly_1.1.8-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 13:04:03 +14 2024 I: pbuilder-time-stamp: 1732230243 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_1.1.8-1.dsc] I: copying [./delly_1.1.8.orig.tar.xz] I: copying [./delly_1.1.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 12 14:54:17 2023 gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.8 dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/D01_modify_environment starting debug: Running on codethink02-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 21 23:04 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=39ab7138ec9c4c5a9c1346101fe3ed76 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2764637 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_GCqe --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b2 --logfile b2/build.log delly_1.1.8-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 chrpath arm64 0.18-1 [13.2 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2 [233 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2 [234 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2 [325 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2 [373 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2 [239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2 [273 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2 [292 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2 [335 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2 [261 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2 [331 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2 [369 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Fetched 62.0 MB in 0s (177 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package chrpath. Preparing to unpack .../015-chrpath_0.18-1_arm64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../026-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../032-icu-devtools_72.1-5+b1_arm64.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../033-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../034-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../035-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../036-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../037-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../038-libgssrpc4t64_1.21.3-3_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../039-libkadm5clnt-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../040-libkdb5-10t64_1.21.3-3_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../041-libkadm5srv-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../042-krb5-multidev_1.21.3-3_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-3) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../043-libboost1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83.0:arm64. Preparing to unpack .../044-libboost-atomic1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83-dev:arm64. Preparing to unpack .../045-libboost-atomic1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83.0:arm64. Preparing to unpack .../046-libboost-date-time1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83.0:arm64. Preparing to unpack .../047-libboost-serialization1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83-dev:arm64. Preparing to unpack .../048-libboost-serialization1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-serialization1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83-dev:arm64. Preparing to unpack .../049-libboost-date-time1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time-dev:arm64. Preparing to unpack .../050-libboost-date-time-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-filesystem1.83.0:arm64. Preparing to unpack .../051-libboost-filesystem1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83.0:arm64. Preparing to unpack .../052-libboost-system1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83-dev:arm64. Preparing to unpack .../053-libboost-system1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem1.83-dev:arm64. Preparing to unpack .../054-libboost-filesystem1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem-dev:arm64. Preparing to unpack .../055-libboost-filesystem-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-regex1.83.0:arm64. Preparing to unpack .../056-libboost-regex1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-regex1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../057-libicu-dev_72.1-5+b1_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-5+b1) ... Selecting previously unselected package libboost-regex1.83-dev:arm64. 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Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up chrpath (0.18-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-2+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3.2) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.6.0-1) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3.2) ... Setting up libngtcp2-dev:arm64 (1.6.0-1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3.2) ... Setting up libldap-dev:arm64 (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-3.2) ... Setting up libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:arm64 (1.21.3-3) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-3) ... Setting up libkdb5-10t64:arm64 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up krb5-multidev:arm64 (1.21.3-3) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.0-1) ... Setting up libhts-dev:arm64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/delly-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../delly_1.1.8-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j12 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/delly-1.1.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from src/delly.cpp:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:521:16, inlined from 'void boost::allocator_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/allocator_access.hpp:737:35, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:76:33, inlined from 'void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:399:26, inlined from 'int torali::asmode(int, char**)' at src/asmode.h:559:17: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function 'int torali::asmode(int, char**)': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: '' declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:166:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: '' declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]' at src/pangenome.h:772:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: '' declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' chrpath -d src/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' # avoiding redundant compile of delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly' in '../delly_1.1.8-1_arm64.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2764637/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2764637 and its subdirectories I: Current time: Fri Nov 22 13:06:19 +14 2024 I: pbuilder-time-stamp: 1732230379 + false + set +x Thu Nov 21 23:06:19 UTC 2024 I: Signing ./b2/delly_1.1.8-1_arm64.buildinfo as delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:06:19 UTC 2024 I: Signed ./b2/delly_1.1.8-1_arm64.buildinfo as ./b2/delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:06:19 UTC 2024 - build #2 for delly/trixie/arm64 on codethink02-arm64 done. Starting cleanup. All cleanup done. Thu Nov 21 23:06:19 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-nMY6BLa3, removing. /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW: total 84 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:04 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:06 b2 -rw-r--r-- 1 jenkins jenkins 2110 Oct 12 2023 delly_1.1.8-1.dsc -rw------- 1 jenkins jenkins 69060 Nov 21 23:04 rbuildlog.1AofC6o /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1: total 10204 -rw-r--r-- 1 jenkins jenkins 65557 Nov 21 23:03 build.log -rw-r--r-- 1 jenkins jenkins 6202100 Nov 21 23:03 delly-dbgsym_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 5244 Nov 21 23:03 delly_1.1.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2110 Nov 21 23:03 delly_1.1.8-1.dsc -rw-r--r-- 1 jenkins jenkins 7996 Nov 21 23:03 delly_1.1.8-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8878 Nov 21 23:03 delly_1.1.8-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Nov 21 23:03 delly_1.1.8-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 363928 Nov 21 23:03 delly_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1461 Nov 21 23:03 delly_1.1.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 3743720 Nov 21 23:04 delly_1.1.8.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b2: total 10180 -rw-r--r-- 1 jenkins jenkins 67500 Nov 21 23:06 build.log -rw-r--r-- 1 jenkins jenkins 6202100 Nov 21 23:06 delly-dbgsym_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 5244 Nov 21 23:06 delly_1.1.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2110 Nov 21 23:06 delly_1.1.8-1.dsc -rw-r--r-- 1 jenkins jenkins 7992 Nov 21 23:06 delly_1.1.8-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8874 Nov 21 23:06 delly_1.1.8-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Nov 21 23:06 delly_1.1.8-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 363928 Nov 21 23:06 delly_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1461 Nov 21 23:06 delly_1.1.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 3743720 Nov 21 23:06 delly_1.1.8.orig.tar.xz Thu Nov 21 23:06:25 UTC 2024 I: Deleting $TMPDIR on codethink02-arm64.debian.net. Thu Nov 21 23:06:26 UTC 2024 I: delly_1.1.8-1_arm64.changes: Format: 1.8 Date: Thu, 12 Oct 2023 14:40:44 +0000 Source: delly Binary: delly delly-dbgsym Architecture: arm64 Version: 1.1.8-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Mohammed Bilal Description: delly - Structural variant discovery by read analysis Changes: delly (1.1.8-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: 45b60c2ffae40bd4596e651dff9dab3c78ef04e8 6202100 delly-dbgsym_1.1.8-1_arm64.deb 6b688aae04cdfeac68c659ad9c1abde82e927643 7996 delly_1.1.8-1_arm64.buildinfo 37be7984535979e2e424e449e3c65ab3faff5954 363928 delly_1.1.8-1_arm64.deb Checksums-Sha256: f88223c1781eecf0d9e46302cea7c97c55efaf87af3d35c941056786a0fe643e 6202100 delly-dbgsym_1.1.8-1_arm64.deb b3869e0581b4c065dcfcf503f39a52741f721deab8005b216b806d7a43d3f430 7996 delly_1.1.8-1_arm64.buildinfo 6e0671771d990b7a361d5e049ece27737e03030c026a483b52e3192dec9839ce 363928 delly_1.1.8-1_arm64.deb Files: 0c35dcbc4eee772fbd45b8fb5b6f27d0 6202100 debug optional delly-dbgsym_1.1.8-1_arm64.deb 75039802d636a7645dc8fa51ba0eee0f 7996 science optional delly_1.1.8-1_arm64.buildinfo 5a64d68053307cbc6ca7608e39cb5142 363928 science optional delly_1.1.8-1_arm64.deb 194c194 < libsystemd0 (= 257~rc2-3), --- > libsystemd0 (= 256.7-3), 202c202 < libudev1 (= 257~rc2-3), --- > libudev1 (= 256.7-3), ============================================================================= Thu Nov 21 23:06:26 UTC 2024 - The installed build depends vary according to the two .buildinfo files, probably due to mirror updates. Doing the first build on codethink04-arm64.debian.net again. ============================================================================= Thu Nov 21 23:06:26 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Thu Nov 21 23:06:26 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Nov 21 23:06:26 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HXlPNP' ==================================================================================== Thu Nov 21 23:06:27 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 delly trixie /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW 1.1.8-1" as arguments. Thu Nov 21 23:06:27 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-505EbPhe" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Nov 21 23:06:27 UTC 2024 I: Downloading source for trixie/delly=1.1.8-1 Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (67.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'delly' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/delly.git Please use: git clone https://salsa.debian.org/med-team/delly.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3751 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (dsc) [2110 B] Get:2 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (tar) [3744 kB] Get:3 http://deb.debian.org/debian trixie/main delly 1.1.8-1 (diff) [5244 B] Fetched 3751 kB in 0s (67.7 MB/s) Download complete and in download only mode ============================================================================= Building delly in trixie on arm64 on codethink04-arm64 now. Date: Thu Nov 21 23:06:28 GMT 2024 Date UTC: Thu Nov 21 23:06:28 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 11:06:28 -12 2024 I: pbuilder-time-stamp: 1732230388 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_1.1.8-1.dsc] I: copying [./delly_1.1.8.orig.tar.xz] I: copying [./delly_1.1.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 12 14:54:17 2023 gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.8 dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1798125/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='53d5dfcf2de948d4b163bc77503e9b97' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1798125' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_OHSx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1 --logfile b1/build.log delly_1.1.8-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1798125/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 chrpath arm64 0.18-1 [13.2 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2 [233 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2 [234 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2 [325 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2 [373 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2 [239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2 [273 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2 [292 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2 [335 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2 [261 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2 [331 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2 [369 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Fetched 62.0 MB in 0s (205 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. 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Selecting previously unselected package chrpath. Preparing to unpack .../015-chrpath_0.18-1_arm64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. 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Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../032-icu-devtools_72.1-5+b1_arm64.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../033-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../034-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../035-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../036-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../037-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../038-libgssrpc4t64_1.21.3-3_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../039-libkadm5clnt-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../040-libkdb5-10t64_1.21.3-3_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../041-libkadm5srv-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../042-krb5-multidev_1.21.3-3_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-3) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../043-libboost1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-3.2) ... 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Unpacking libboost-serialization1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83-dev:arm64. Preparing to unpack .../049-libboost-date-time1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time-dev:arm64. Preparing to unpack .../050-libboost-date-time-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-filesystem1.83.0:arm64. Preparing to unpack .../051-libboost-filesystem1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83.0:arm64. Preparing to unpack .../052-libboost-system1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-system1.83-dev:arm64. Preparing to unpack .../053-libboost-system1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-system1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem1.83-dev:arm64. Preparing to unpack .../054-libboost-filesystem1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-filesystem1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-filesystem-dev:arm64. Preparing to unpack .../055-libboost-filesystem-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-regex1.83.0:arm64. Preparing to unpack .../056-libboost-regex1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-regex1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libicu-dev:arm64. Preparing to unpack .../057-libicu-dev_72.1-5+b1_arm64.deb ... Unpacking libicu-dev:arm64 (72.1-5+b1) ... Selecting previously unselected package libboost-regex1.83-dev:arm64. 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Unpacking libboost-program-options1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-program-options-dev:arm64. Preparing to unpack .../063-libboost-program-options-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-program-options-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libboost-system-dev:arm64. Preparing to unpack .../064-libboost-system-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-system-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../065-libbrotli1_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../066-libbrotli-dev_1.1.0-2+b6_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b6) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../067-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../068-libsasl2-modules-db_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../069-libsasl2-2_2.1.28+dfsg1-8_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Selecting previously unselected package libldap-2.5-0:arm64. Preparing to unpack .../070-libldap-2.5-0_2.5.18+dfsg-3+b1_arm64.deb ... Unpacking libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../071-libnghttp2-14_1.64.0-1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../072-libnghttp3-9_1.4.0-1+b1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.4.0-1+b1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../073-libngtcp2-16_1.6.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.6.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../074-libngtcp2-crypto-gnutls8_1.6.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../075-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../076-librtmp1_2.4+20151223.gitfa8646d.1-2+b5_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../077-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../078-libcurl3t64-gnutls_8.11.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.11.0-1) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../079-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../080-libunbound8_1.22.0-1_arm64.deb ... Unpacking libunbound8:arm64 (1.22.0-1) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../081-libgnutls-dane0t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.8-2) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../082-libgnutls-openssl27t64_3.8.8-2_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.8-2) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../083-libidn2-dev_2.3.7-2+b1_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.7-2+b1) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/delly-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_1.1.8-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j12 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/delly-1.1.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from src/delly.cpp:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:521:16, inlined from 'void boost::allocator_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/allocator_access.hpp:737:35, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:76:33, inlined from 'void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:399:26, inlined from 'int torali::asmode(int, char**)' at src/asmode.h:559:17: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function 'int torali::asmode(int, char**)': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: '' declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:166:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: '' declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]' at src/pangenome.h:772:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: '' declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' chrpath -d src/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' # avoiding redundant compile of delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly' in '../delly_1.1.8-1_arm64.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1798125 and its subdirectories I: Current time: Thu Nov 21 11:08:44 -12 2024 I: pbuilder-time-stamp: 1732230524 Thu Nov 21 23:08:44 UTC 2024 I: Signing ./b1/delly_1.1.8-1_arm64.buildinfo as delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:08:45 UTC 2024 I: Signed ./b1/delly_1.1.8-1_arm64.buildinfo as ./b1/delly_1.1.8-1_arm64.buildinfo.asc Thu Nov 21 23:08:45 UTC 2024 - build #1 for delly/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Nov 21 23:08:45 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-505EbPhe, removing. /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW: total 104 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:08 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 21 23:06 b2 -rw-r--r-- 1 jenkins jenkins 2110 Oct 12 2023 delly_1.1.8-1.dsc -rw------- 1 jenkins jenkins 70649 Nov 21 23:06 rbuildlog.1AofC6o -rw------- 1 jenkins jenkins 6938 Nov 21 23:06 tmp.HuhJeZZ4jI -rw------- 1 jenkins jenkins 6934 Nov 21 23:06 tmp.XvLmv11rsQ /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1: total 10204 -rw-r--r-- 1 jenkins jenkins 65557 Nov 21 23:08 build.log -rw-r--r-- 1 jenkins jenkins 6202100 Nov 21 23:08 delly-dbgsym_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 5244 Nov 21 23:08 delly_1.1.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2110 Nov 21 23:08 delly_1.1.8-1.dsc -rw-r--r-- 1 jenkins jenkins 7996 Nov 21 23:08 delly_1.1.8-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8878 Nov 21 23:08 delly_1.1.8-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Nov 21 23:08 delly_1.1.8-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 363928 Nov 21 23:08 delly_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1461 Nov 21 23:08 delly_1.1.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 3743720 Nov 21 23:08 delly_1.1.8.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b2: total 10204 -rw-r--r-- 1 jenkins jenkins 67500 Nov 21 23:06 build.log -rw-r--r-- 1 jenkins jenkins 6202100 Nov 21 23:06 delly-dbgsym_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 5244 Nov 21 23:06 delly_1.1.8-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2110 Nov 21 23:06 delly_1.1.8-1.dsc -rw-r--r-- 1 jenkins jenkins 7992 Nov 21 23:06 delly_1.1.8-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 8874 Nov 21 23:06 delly_1.1.8-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1345 Nov 21 23:06 delly_1.1.8-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 363928 Nov 21 23:06 delly_1.1.8-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1461 Nov 21 23:06 delly_1.1.8-1_source.changes -rw-r--r-- 1 jenkins jenkins 3743720 Nov 21 23:06 delly_1.1.8.orig.tar.xz Thu Nov 21 23:08:46 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Nov 21 11:06:28 -12 2024 I: pbuilder-time-stamp: 1732230388 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [delly_1.1.8-1.dsc] I: copying [./delly_1.1.8.orig.tar.xz] I: copying [./delly_1.1.8-1.debian.tar.xz] I: Extracting source gpgv: Signature made Thu Oct 12 14:54:17 2023 gpgv: using RSA key 2D65BC1EB9665A6E97F9730AB3F5945285219E1F gpgv: issuer "rmb@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./delly_1.1.8-1.dsc: no acceptable signature found dpkg-source: info: extracting delly in delly-1.1.8 dpkg-source: info: unpacking delly_1.1.8.orig.tar.xz dpkg-source: info: unpacking delly_1.1.8-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1798125/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='53d5dfcf2de948d4b163bc77503e9b97' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1798125' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/pbuilderrc_OHSx --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/b1 --logfile b1/build.log delly_1.1.8-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1798125/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libboost-date-time-dev, libboost-program-options-dev, libboost-system-dev, libboost-filesystem-dev, libboost-iostreams-dev, libhts-dev, libbz2-dev, zlib1g-dev, chrpath, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libboost-date-time-dev; however: Package libboost-date-time-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-program-options-dev; however: Package libboost-program-options-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-system-dev; however: Package libboost-system-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-filesystem-dev; however: Package libboost-filesystem-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-iostreams-dev; however: Package libboost-iostreams-dev is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on chrpath; however: Package chrpath is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} chrpath{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} icu-devtools{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libboost-atomic1.83-dev{a} libboost-atomic1.83.0{a} libboost-date-time-dev{a} libboost-date-time1.83-dev{a} libboost-date-time1.83.0{a} libboost-filesystem-dev{a} libboost-filesystem1.83-dev{a} libboost-filesystem1.83.0{a} libboost-iostreams-dev{a} libboost-iostreams1.83-dev{a} libboost-program-options-dev{a} libboost-program-options1.83-dev{a} libboost-program-options1.83.0{a} libboost-regex1.83-dev{a} libboost-regex1.83.0{a} libboost-serialization1.83-dev{a} libboost-serialization1.83.0{a} libboost-system-dev{a} libboost-system1.83-dev{a} libboost-system1.83.0{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-2.5-0{a} libldap-dev{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libxml2{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 62.0 MB of archives. After unpacking 390 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 chrpath arm64 0.18-1 [13.2 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 25 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 37 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83.0 arm64 1.83.0-3.2 [233 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libboost-atomic1.83-dev arm64 1.83.0-3.2 [234 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83.0 arm64 1.83.0-3.2 [325 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 libboost-serialization1.83-dev arm64 1.83.0-3.2 [373 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 libboost-date-time1.83-dev arm64 1.83.0-3.2 [239 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 libboost-date-time-dev arm64 1.83.0.2+b2 [3584 B] Get: 52 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83.0 arm64 1.83.0-3.2 [273 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83.0 arm64 1.83.0-3.2 [230 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libboost-system1.83-dev arm64 1.83.0-3.2 [231 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem1.83-dev arm64 1.83.0-3.2 [292 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libboost-filesystem-dev arm64 1.83.0.2+b2 [3616 B] Get: 57 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83.0 arm64 1.83.0-3.2 [314 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libboost-regex1.83-dev arm64 1.83.0-3.2 [335 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams1.83-dev arm64 1.83.0-3.2 [261 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libboost-iostreams-dev arm64 1.83.0.2+b2 [3568 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83.0 arm64 1.83.0-3.2 [331 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libboost-program-options1.83-dev arm64 1.83.0-3.2 [369 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libboost-program-options-dev arm64 1.83.0.2+b2 [3600 B] Get: 65 http://deb.debian.org/debian trixie/main arm64 libboost-system-dev arm64 1.83.0.2+b2 [3720 B] Get: 66 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libnghttp3-dev arm64 1.4.0-1+b1 [85.2 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.6.0-1 [23.7 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libngtcp2-dev arm64 1.6.0-1 [165 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libcurl4-gnutls-dev arm64 8.11.0-1 [459 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libhtscodecs2 arm64 1.6.1-1 [74.6 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 libhts3t64 arm64 1.20+ds-2 [420 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 libhts-dev arm64 1.20+ds-2 [1626 kB] Fetched 62.0 MB in 0s (205 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../001-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../002-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../003-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../004-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../005-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../006-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../007-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../008-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../009-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../010-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../011-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../012-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../013-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../014-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package chrpath. Preparing to unpack .../015-chrpath_0.18-1_arm64.deb ... Unpacking chrpath (0.18-1) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../016-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../017-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../018-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../019-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../020-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../021-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../022-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../023-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../024-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../025-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../026-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../027-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../028-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../029-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../030-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../031-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package icu-devtools. Preparing to unpack .../032-icu-devtools_72.1-5+b1_arm64.deb ... Unpacking icu-devtools (72.1-5+b1) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../033-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../034-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../035-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../036-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../037-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../038-libgssrpc4t64_1.21.3-3_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../039-libkadm5clnt-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../040-libkdb5-10t64_1.21.3-3_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-3) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../041-libkadm5srv-mit12_1.21.3-3_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-3) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../042-krb5-multidev_1.21.3-3_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-3) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../043-libboost1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83.0:arm64. Preparing to unpack .../044-libboost-atomic1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-atomic1.83-dev:arm64. Preparing to unpack .../045-libboost-atomic1.83-dev_1.83.0-3.2_arm64.deb ... Unpacking libboost-atomic1.83-dev:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-date-time1.83.0:arm64. Preparing to unpack .../046-libboost-date-time1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-date-time1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83.0:arm64. Preparing to unpack .../047-libboost-serialization1.83.0_1.83.0-3.2_arm64.deb ... Unpacking libboost-serialization1.83.0:arm64 (1.83.0-3.2) ... Selecting previously unselected package libboost-serialization1.83-dev:arm64. Preparing to unpack .../048-libboost-serialization1.83-dev_1.83.0-3.2_arm64.deb ... 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Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up chrpath (0.18-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-2+b1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libtool (2.4.7-8) ... Setting up libboost-system-dev:arm64 (1.83.0.2+b2) ... Setting up libboost-serialization1.83-dev:arm64 (1.83.0-3.2) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.6.0-1) ... Setting up libboost-filesystem1.83-dev:arm64 (1.83.0-3.2) ... Setting up libngtcp2-dev:arm64 (1.6.0-1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libboost-date-time1.83-dev:arm64 (1.83.0-3.2) ... Setting up libldap-dev:arm64 (2.5.18+dfsg-3+b1) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libboost-regex1.83-dev:arm64 (1.83.0-3.2) ... Setting up libboost-date-time-dev:arm64 (1.83.0.2+b2) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libboost-filesystem-dev:arm64 (1.83.0.2+b2) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up libboost-iostreams1.83-dev:arm64 (1.83.0-3.2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libboost-iostreams-dev:arm64 (1.83.0.2+b2) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgssrpc4t64:arm64 (1.21.3-3) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libhts3t64:arm64 (1.20+ds-2) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-3) ... Setting up libkdb5-10t64:arm64 (1.21.3-3) ... Setting up debhelper (13.20) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up krb5-multidev:arm64 (1.21.3-3) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up libcurl4-gnutls-dev:arm64 (8.11.0-1) ... Setting up libhts-dev:arm64 (1.20+ds-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/delly-1.1.8/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../delly_1.1.8-1_source.changes dpkg-buildpackage: info: source package delly dpkg-buildpackage: info: source version 1.1.8-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Mohammed Bilal dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_clean make -j12 distclean make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' if [ -r src/htslib/Makefile ]; then cd src/htslib && make clean; fi rm -f src/delly src/delly.o rm -f src/delly make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' rm -rf src/dpe src/delly bin/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure debian/rules override_dh_auto_build make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' dh_auto_build -- BUILT_PROGRAMS="src/delly" PARALLEL=1 make -j12 "INSTALL=install --strip-program=true" BUILT_PROGRAMS=src/delly PARALLEL=1 make[2]: Entering directory '/build/reproducible-path/delly-1.1.8' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/delly-1.1.8=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++11 -isystem /usr/include/htslib/ -pedantic -W -Wall -Wno-unknown-pragmas -D__STDC_LIMIT_MACROS -fno-strict-aliasing -fpermissive -fopenmp -DOPENMP -O3 -fno-tree-vectorize -DNDEBUG src/delly.cpp src/edlib.cpp -o src/delly -Wl,-z,relro -Wl,-z,now -L/usr/include/htslib/ -lboost_iostreams -lboost_filesystem -lboost_system -lboost_program_options -lboost_date_time -lhts -lz -llzma -lbz2 -Wl,-rpath,/usr/include/htslib/ In file included from /usr/include/boost/math/special_functions/detail/round_fwd.hpp:11, from /usr/include/boost/math/special_functions/math_fwd.hpp:29, from /usr/include/boost/math/special_functions/pow.hpp:16, from src/delly.h:19, from src/delly.cpp:18: /usr/include/boost/math/tools/config.hpp:23:6: warning: #warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" [-Wcpp] 23 | # warning "The minimum language standard to use Boost.Math will be C++14 starting in July 2023 (Boost 1.82 release)" | ^~~~~~~ In file included from src/util.h:15, from src/delly.h:32: src/tags.h:76:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 76 | struct SortSVs : public std::binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/string:49, from /usr/include/c++/14/bits/locale_classes.h:40, from /usr/include/c++/14/bits/ios_base.h:41, from /usr/include/c++/14/ios:44, from /usr/include/c++/14/ostream:40, from /usr/include/c++/14/iostream:41, from src/delly.cpp:3: /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/util.h:61:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 61 | struct SortCNVs : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.h:35: src/coverage.h:51:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 51 | struct SortBp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:36, from src/delly.h:38: src/junction.h:37:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 37 | struct SortSRBamRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/junction.h:80:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 80 | struct SortJunction : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/shortpe.h:37: src/cluster.h:42:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortBamRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ src/cluster.h:71:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 71 | struct SortEdgeRecords : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:21: src/merge.h:68:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 68 | struct SortIScores : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:17, from src/delly.cpp:23: src/scan.h:33:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 33 | struct SortScanWindow : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/coral.h:19: src/cnv.h:42:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct SortSVBreakpoint : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:33, from src/delly.cpp:26: src/gfa.h:43:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 43 | struct SortLinks : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/pangenome.h:34: src/gaf.h:41:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 41 | struct SortAlignRecord : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:27: src/markdup.h:62:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 62 | struct SortSVEvents : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from src/delly.cpp:28: src/compvcf.h:65:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | struct SortCompSVRecord : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/include/aarch64-linux-gnu/c++/14/bits/c++allocator.h:33, from /usr/include/c++/14/bits/allocator.h:46, from /usr/include/c++/14/string:43: In member function 'void std::__new_allocator<_Tp>::construct(_Up*, _Args&& ...) [with _Up = char; _Args = {}; _Tp = char]', inlined from 'typename std::enable_if::value>::type boost::allocator_construct(A&, T*, Args&& ...) [with A = std::allocator; T = char; Args = {}]' at /usr/include/boost/core/allocator_access.hpp:521:16, inlined from 'void boost::allocator_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/allocator_access.hpp:737:35, inlined from 'void boost::alloc_construct_n(A&, T*, std::size_t) [with A = std::allocator; T = char]' at /usr/include/boost/core/alloc_construct.hpp:76:33, inlined from 'void boost::multi_array::allocate_space() [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:548:29, inlined from 'boost::multi_array::multi_array(const Allocator&) [with T = char; long unsigned int NumDims = 2; Allocator = std::allocator]' at /usr/include/boost/multi_array.hpp:156:19: /usr/include/c++/14/bits/new_allocator.h:191:11: warning: 'void* __builtin_memset(void*, int, long unsigned int)' offset 0 is out of the bounds [0, 0] [-Warray-bounds=] 191 | { ::new((void *)__p) _Up(std::forward<_Args>(__args)...); } | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:66, from /usr/include/boost/graph/adjacency_list.hpp:16, from src/delly.h:8: In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runAsm(TConfig&) [with TConfig = AsmConfig]' at src/asmode.h:399:26, inlined from 'int torali::asmode(int, char**)' at src/asmode.h:559:17: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/14/vector:72: /usr/include/c++/14/bits/vector.tcc: In function 'int torali::asmode(int, char**)': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:24: src/asmode.h:399:39: note: '' declared here 399 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]' at src/coverage.h:265:30: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'void torali::annotateCoverage(TConfig&, TSampleLibrary&, TSVs&, TCoverageCount&, TCountMap&, TSpanMap&) [with TConfig = Config; TSampleLibrary = std::vector; TSVs = std::vector; TCoverageCount = std::vector >; TCountMap = std::vector >; TSpanMap = std::vector >]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/coverage.h:265:43: note: '' declared here 265 | covCount[file_c].resize(svs.size(), TCovPair()); | ^~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]' at src/tegua.h:166:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runTegua(TConfig&) [with TConfig = TeguaConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from src/delly.cpp:22: src/tegua.h:166:39: note: '' declared here 166 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ In member function 'void std::vector<_Tp, _Alloc>::resize(size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]', inlined from 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]' at src/pangenome.h:772:26: /usr/include/c++/14/bits/stl_vector.h:1037:25: warning: '' may be used uninitialized [-Wmaybe-uninitialized] 1037 | _M_fill_insert(end(), __new_size - size(), __x); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/14/bits/vector.tcc: In function 'int32_t torali::runGraph(TConfig&) [with TConfig = GraphConfig]': /usr/include/c++/14/bits/vector.tcc:700:5: note: by argument 4 of type 'const std::vector::value_type&' {aka 'const torali::ReadCount&'} to 'void std::vector<_Tp, _Alloc>::_M_fill_insert(iterator, size_type, const value_type&) [with _Tp = torali::ReadCount; _Alloc = std::allocator]' declared here 700 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ src/pangenome.h:772:39: note: '' declared here 772 | rcMap[file_c].resize(svs.size(), ReadCount()); | ^~~~~~~~~~~ make[2]: Leaving directory '/build/reproducible-path/delly-1.1.8' chrpath -d src/delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/delly-1.1.8' # avoiding redundant compile of delly make[1]: Leaving directory '/build/reproducible-path/delly-1.1.8' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'delly' in '../delly_1.1.8-1_arm64.deb'. dpkg-deb: building package 'delly-dbgsym' in '../delly-dbgsym_1.1.8-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../delly_1.1.8-1_arm64.buildinfo dpkg-genchanges --build=binary -O../delly_1.1.8-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1798125 and its subdirectories I: Current time: Thu Nov 21 11:08:44 -12 2024 I: pbuilder-time-stamp: 1732230524 194c194 < libsystemd0 (= 257~rc2-3), --- > libsystemd0 (= 256.7-3), 202c202 < libudev1 (= 257~rc2-3), --- > libudev1 (= 256.7-3), UPDATE 1 Thu Nov 21 23:08:46 UTC 2024 - https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_22/40560/console.log encountered a problem: different packages were installed in the 1st+2nd builds and also in the 2nd+3rd build. -rw-r--r-- 1 jenkins jenkins 7996 Nov 21 23:08 ./b1/delly_1.1.8-1_arm64.buildinfo on codethink04-arm64.debian.net -rw-r--r-- 1 jenkins jenkins 7992 Nov 21 23:06 ./b2/delly_1.1.8-1_arm64.buildinfo on codethink02-arm64.debian.net Starting cleanup. /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/rbuildlog.1AofC6o: 82.1% -- replaced with /srv/reproducible-results/rbuild-debian/r-b-build.h2oC3vJW/rbuildlog.1AofC6o.gz [2024-11-21 23:08:47] INFO: Starting at 2024-11-21 23:08:47.192784 [2024-11-21 23:08:47] INFO: Generating the pages of 1 package(s) [2024-11-21 23:08:47] INFO: Finished at 2024-11-21 23:08:47.600067, took: 0:00:00.407290 All cleanup done. Thu Nov 21 23:08:47 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-GFh5RENS, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 7min 12.491s CPU time consumed: 5.988s