Running as unit: rb-build-arm64_23-67440.service ==================================================================================== Fri Nov 22 18:35:40 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_23) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Fri Nov 22 18:35:40 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-pHmLeciz" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 18:35:40 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 18:35:40 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HLDxs9' Fri Nov 22 18:35:40 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 18:35:40 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-U8qdCp' ok, let's check if sim4 is building anywhere yet… ok, sim4 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of sim4 in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Nov 22 18:35:43 UTC 2024 I: starting to build sim4/trixie/arm64 on jenkins on '2024-11-22 18:35' Fri Nov 22 18:35:43 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_23/67440/console.log 1732300543 arm64 trixie sim4 Fri Nov 22 18:35:43 UTC 2024 I: Downloading source for trixie/sim4=0.0.20121010-8 --2024-11-22 18:35:44-- http://deb.debian.org/debian/pool/main/s/sim4/sim4_0.0.20121010-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sim4_0.0.20121010-8.dsc’ 0K . 100% 267M=0s 2024-11-22 18:35:44 (267 MB/s) - ‘sim4_0.0.20121010-8.dsc’ saved [1978/1978] --2024-11-22 18:35:44-- http://deb.debian.org/debian/pool/main/s/sim4/sim4_0.0.20121010-8.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1978 (1.9K) [text/prs.lines.tag] Saving to: ‘sim4_0.0.20121010-8.dsc’ 0K . 100% 267M=0s 2024-11-22 18:35:44 (267 MB/s) - ‘sim4_0.0.20121010-8.dsc’ saved [1978/1978] Fri Nov 22 18:35:44 UTC 2024 I: sim4_0.0.20121010-8.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: sim4 Binary: sim4 Architecture: any Version: 0.0.20121010-8 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://globin.bx.psu.edu/html/docs/sim4.html Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/sim4 Vcs-Git: https://salsa.debian.org/med-team/sim4.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: sim4 deb science optional arch=any Checksums-Sha1: af09413d4f79f2f6f642c26f1084a9403c3a3257 61240 sim4_0.0.20121010.orig.tar.gz 5325071e56f291a76203f9289657132845a29dcd 315540 sim4_0.0.20121010-8.debian.tar.xz Checksums-Sha256: d2132f61e47f2de5e35d0b48a0f697ae79ece3e8b91177eae2dfe47bda97b4a5 61240 sim4_0.0.20121010.orig.tar.gz 76a0f331358cd01fb7d93107678dbeb066cf2e7e60419d946624909f1d50a94a 315540 sim4_0.0.20121010-8.debian.tar.xz Files: 8bca6eb05c5aaf689db0db12522bdf34 61240 sim4_0.0.20121010.orig.tar.gz f5ef5efa2b5354ec7d06144d5a4cb246 315540 sim4_0.0.20121010-8.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAl/KS6MRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHjsw//Z2CkFUGn/Bb7PswKylgSLYeaQie3R7xD iyOs31xwhEz61rYb5nBVKKzUR+dLAsTmITFxozCMo1NkrF1lNVExdI2mzKh5u6Bv Xrt5gwSm0f/Im1I5adfTiYKzJTpWNr1AiNyDFGC9S7uT1PHK9hBBOBc2fpKgllzW Y+PrmuwrfMUbYqOh2ftnxIwCu4MkgxSZkpMdrieylQE9X+qF3vABH+j6mkmh7z6W UVWsIiZI9TFEBldyM7JJNCZCeeHwk0dy2DQa+X+PtaeAX0hMknlcmZ6ISHy97JXj xMMfMJUg+w7VefGRMM4tMXp35SjvT01PguJxcfi2HrKFCBMY6ggxVrN5V989uy9g k3fzmZIbHqD7yjQG8W33JCfa4LxCbVjGw+BJjRDGwhKzV7Y1hAESqTFLV9sijVI1 fJIFx2XJhO36EMR1g6hNRDJQFtEIS8Pfo9JGzqiAADF6JPRzx9mEfIe13J0rl/87 6iqO15kQYEoAGhu6adifhYUd2PYImKytIoSbhgDy/014zS2JZ760lx7NkPG2dPKy NaU2KNWV3yWMPp0VHHI11fQh0uCBckWJ5i9W4Cw59sQ11o3xNLbf+TtmjIRlOAXI 2K7zJQA1O9WoJBjVcHQY1+9PEjmiWWLtWbuBblF1gcDKKzBWbkBFpMVS4GgxgL5v cBfAiZt/ZOk= =yLLo -----END PGP SIGNATURE----- Fri Nov 22 18:35:44 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 18:35:44 UTC 2024 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Nov 22 18:35:44 UTC 2024 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Nov 22 18:35:44 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 18:35:44 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-XUPa76' ==================================================================================== Fri Dec 26 00:58:45 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 sim4 trixie /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq 0.0.20121010-8" as arguments. Fri Dec 26 00:58:45 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-qWQZOacm" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 26 00:58:45 UTC 2025 I: Downloading source for trixie/sim4=0.0.20121010-8 Reading package lists... NOTICE: 'sim4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sim4.git Please use: git clone https://salsa.debian.org/med-team/sim4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (tar) [61.2 kB] Get:3 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (diff) [316 kB] Fetched 379 kB in 0s (10.8 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sim4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sim4.git Please use: git clone https://salsa.debian.org/med-team/sim4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (tar) [61.2 kB] Get:3 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (diff) [316 kB] Fetched 379 kB in 0s (10.8 MB/s) Download complete and in download only mode ============================================================================= Building sim4 in trixie on arm64 on codethink03-arm64 now. Date: Fri Dec 26 00:58:46 GMT 2025 Date UTC: Fri Dec 26 00:58:46 UTC 2025 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 12:58:46 -12 2025 I: pbuilder-time-stamp: 1766710726 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sim4_0.0.20121010-8.dsc] I: copying [./sim4_0.0.20121010.orig.tar.gz] I: copying [./sim4_0.0.20121010-8.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 4 14:45:55 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sim4_0.0.20121010-8.dsc: no acceptable signature found dpkg-source: info: extracting sim4 in sim4-0.0.20121010 dpkg-source: info: unpacking sim4_0.0.20121010.orig.tar.gz dpkg-source: info: unpacking sim4_0.0.20121010-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying compilation_order.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='63fa7ed81621429e9822ca6d9656f01c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3097945' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_DI4N --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1 --logfile b1/build.log sim4_0.0.20121010-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (118 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sim4-0.0.20121010/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sim4_0.0.20121010-8_source.changes dpkg-buildpackage: info: source package sim4 dpkg-buildpackage: info: source version 0.0.20121010-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' rm -f sim4 *.o make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' cc -o sim4 -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sim4-0.0.20121010=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Wall `LC_ALL=C ls *.c` -lm -Wl,-z,relro Xtend1.c:12:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 12 | static const char rcsid[] = | ^~~~~ align.c:13:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 13 | static const char rcsid[] = | ^~~~~ align.c: In function 'align_path': align.c:250:13: warning: 'head2' may be used uninitialized [-Wmaybe-uninitialized] 250 | if (head2) *tail = tail2; | ^~~~~ align.c:27:38: note: 'head2' declared here 27 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ args.c:7:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 7 | static const char rcsid[] = | ^~~~~ discrim.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ dna.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ encoding.c:52:20: warning: 'osx_linker_bug' defined but not used [-Wunused-variable] 52 | static const char *osx_linker_bug = ""; | ^~~~~~~~~~~~~~ encoding.c:3:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 3 | static const char rcsid[] = | ^~~~~ misc.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ poly.c: In function 'remove_polyA_back': poly.c:108:29: warning: variable 'prev' set but not used [-Wunused-but-set-variable] 108 | Exon *t, *exons_tail, *prev; /* start from Lblock */ | ^~~~ poly.c: At top level: poly.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = "$Id: poly.c,v 1.5 2002/03/03 23:29:48 florea Exp $"; | ^~~~~ prnt.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ seq.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ seq_read.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ sim4.init.c: In function 'cds_range': sim4.init.c:672:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:672:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c:673:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:673:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c: At top level: sim4.init.c:61:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 61 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'find_ends': sim4b1.c:1523:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~ sim4b1.c:1523:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~~~~ sim4b1.c: At top level: sim4b1.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'print_pipmaker_exons': sim4b1.c:1386:11: warning: 'From' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:8: note: 'From' was declared here 1307 | int From, To, cov, ori; | ^~~~ sim4b1.c:1386:11: warning: 'To' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:14: note: 'To' was declared here 1307 | int From, To, cov, ori; | ^~ splice.c: In function 'splice': splice.c:45:67: warning: variable 'keep_Gi' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c:45:58: warning: variable 'keep_Ci' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c: At top level: splice.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/sim4/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sim4' in '../sim4_0.0.20121010-8_arm64.deb'. dpkg-deb: building package 'sim4-dbgsym' in '../sim4-dbgsym_0.0.20121010-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sim4_0.0.20121010-8_arm64.buildinfo dpkg-genchanges --build=binary -O../sim4_0.0.20121010-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3097945 and its subdirectories I: Current time: Thu Dec 25 12:59:16 -12 2025 I: pbuilder-time-stamp: 1766710756 Fri Dec 26 00:59:16 UTC 2025 I: Signing ./b1/sim4_0.0.20121010-8_arm64.buildinfo as sim4_0.0.20121010-8_arm64.buildinfo.asc Fri Dec 26 00:59:16 UTC 2025 I: Signed ./b1/sim4_0.0.20121010-8_arm64.buildinfo as ./b1/sim4_0.0.20121010-8_arm64.buildinfo.asc Fri Dec 26 00:59:16 UTC 2025 - build #1 for sim4/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 26 00:59:16 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-qWQZOacm, removing. /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:36 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:35 b2 -rw------- 1 jenkins jenkins 3098 Nov 22 18:35 rbuildlog.DefIsyE -rw-r--r-- 1 jenkins jenkins 1978 Dec 4 2020 sim4_0.0.20121010-8.dsc /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1: total 824 -rw-r--r-- 1 jenkins jenkins 23918 Nov 22 18:36 build.log -rw-r--r-- 1 jenkins jenkins 110984 Nov 22 18:36 sim4-dbgsym_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 315540 Nov 22 18:36 sim4_0.0.20121010-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Nov 22 18:36 sim4_0.0.20121010-8.dsc -rw-r--r-- 1 jenkins jenkins 4967 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5849 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1484 Nov 22 18:36 sim4_0.0.20121010-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 356080 Nov 22 18:36 sim4_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1363 Nov 22 18:36 sim4_0.0.20121010-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2: total 0 Fri Nov 22 18:36:17 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 25 12:58:46 -12 2025 I: pbuilder-time-stamp: 1766710726 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sim4_0.0.20121010-8.dsc] I: copying [./sim4_0.0.20121010.orig.tar.gz] I: copying [./sim4_0.0.20121010-8.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 4 14:45:55 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sim4_0.0.20121010-8.dsc: no acceptable signature found dpkg-source: info: extracting sim4 in sim4-0.0.20121010 dpkg-source: info: unpacking sim4_0.0.20121010.orig.tar.gz dpkg-source: info: unpacking sim4_0.0.20121010-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying compilation_order.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='63fa7ed81621429e9822ca6d9656f01c' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='3097945' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_DI4N --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1 --logfile b1/build.log sim4_0.0.20121010-8.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (118 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. 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Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/sim4-0.0.20121010/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sim4_0.0.20121010-8_source.changes dpkg-buildpackage: info: source package sim4 dpkg-buildpackage: info: source version 0.0.20121010-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' rm -f sim4 *.o make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' cc -o sim4 -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sim4-0.0.20121010=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Wall `LC_ALL=C ls *.c` -lm -Wl,-z,relro Xtend1.c:12:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 12 | static const char rcsid[] = | ^~~~~ align.c:13:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 13 | static const char rcsid[] = | ^~~~~ align.c: In function 'align_path': align.c:250:13: warning: 'head2' may be used uninitialized [-Wmaybe-uninitialized] 250 | if (head2) *tail = tail2; | ^~~~~ align.c:27:38: note: 'head2' declared here 27 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ args.c:7:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 7 | static const char rcsid[] = | ^~~~~ discrim.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ dna.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ encoding.c:52:20: warning: 'osx_linker_bug' defined but not used [-Wunused-variable] 52 | static const char *osx_linker_bug = ""; | ^~~~~~~~~~~~~~ encoding.c:3:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 3 | static const char rcsid[] = | ^~~~~ misc.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ poly.c: In function 'remove_polyA_back': poly.c:108:29: warning: variable 'prev' set but not used [-Wunused-but-set-variable] 108 | Exon *t, *exons_tail, *prev; /* start from Lblock */ | ^~~~ poly.c: At top level: poly.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = "$Id: poly.c,v 1.5 2002/03/03 23:29:48 florea Exp $"; | ^~~~~ prnt.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ seq.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ seq_read.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ sim4.init.c: In function 'cds_range': sim4.init.c:672:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:672:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c:673:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:673:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c: At top level: sim4.init.c:61:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 61 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'find_ends': sim4b1.c:1523:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~ sim4b1.c:1523:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~~~~ sim4b1.c: At top level: sim4b1.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'print_pipmaker_exons': sim4b1.c:1386:11: warning: 'From' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:8: note: 'From' was declared here 1307 | int From, To, cov, ori; | ^~~~ sim4b1.c:1386:11: warning: 'To' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:14: note: 'To' was declared here 1307 | int From, To, cov, ori; | ^~ splice.c: In function 'splice': splice.c:45:67: warning: variable 'keep_Gi' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c:45:58: warning: variable 'keep_Ci' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c: At top level: splice.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/sim4/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sim4' in '../sim4_0.0.20121010-8_arm64.deb'. dpkg-deb: building package 'sim4-dbgsym' in '../sim4-dbgsym_0.0.20121010-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sim4_0.0.20121010-8_arm64.buildinfo dpkg-genchanges --build=binary -O../sim4_0.0.20121010-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3097945 and its subdirectories I: Current time: Thu Dec 25 12:59:16 -12 2025 I: pbuilder-time-stamp: 1766710756 Fri Nov 22 18:36:18 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Nov 22 18:36:18 UTC 2024 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Nov 22 18:36:18 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 18:36:18 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Tczo0p' ==================================================================================== Fri Nov 22 18:36:20 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 sim4 trixie /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq 0.0.20121010-8" as arguments. Fri Nov 22 18:36:20 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-XkrvZcG0" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 18:36:20 UTC 2024 I: Downloading source for trixie/sim4=0.0.20121010-8 Reading package lists... NOTICE: 'sim4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sim4.git Please use: git clone https://salsa.debian.org/med-team/sim4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (tar) [61.2 kB] Get:3 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (diff) [316 kB] Fetched 379 kB in 0s (33.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'sim4' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/sim4.git Please use: git clone https://salsa.debian.org/med-team/sim4.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 379 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (dsc) [1978 B] Get:2 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (tar) [61.2 kB] Get:3 http://deb.debian.org/debian trixie/main sim4 0.0.20121010-8 (diff) [316 kB] Fetched 379 kB in 0s (33.9 MB/s) Download complete and in download only mode ============================================================================= Re-Building sim4 in trixie on arm64 on codethink04-arm64 now. Date: Fri Nov 22 18:36:20 GMT 2024 Date UTC: Fri Nov 22 18:36:20 UTC 2024 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_vhCn + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' sim4 = debian-installer -o sim4 = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' sim4 = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_vhCn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2 --logfile b2/build.log sim4_0.0.20121010-8.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 23 08:36:21 +14 2024 I: pbuilder-time-stamp: 1732300581 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [sim4_0.0.20121010-8.dsc] I: copying [./sim4_0.0.20121010.orig.tar.gz] I: copying [./sim4_0.0.20121010-8.debian.tar.xz] I: Extracting source gpgv: Signature made Fri Dec 4 14:45:55 2020 gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./sim4_0.0.20121010-8.dsc: no acceptable signature found dpkg-source: info: extracting sim4 in sim4-0.0.20121010 dpkg-source: info: unpacking sim4_0.0.20121010.orig.tar.gz dpkg-source: info: unpacking sim4_0.0.20121010-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch dpkg-source: info: applying compilation_order.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 22 18:36 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=77e7ebba2c2f4d87b1239b75d8a8122a LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=2579296 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_vhCn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2 --logfile b2/build.log sim4_0.0.20121010-8.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13) dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libicu72{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 29 newly installed, 0 to remove and 0 not upgraded. Need to get 19.4 MB of archives. After unpacking 77.8 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Fetched 19.4 MB in 0s (149 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../23-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20220109.1) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up gettext (0.22.5-2) ... Setting up libtool (2.4.7-8) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.20) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/sim4-0.0.20121010/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sim4_0.0.20121010-8_source.changes dpkg-buildpackage: info: source package sim4 dpkg-buildpackage: info: source version 0.0.20121010-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' rm -f sim4 *.o make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/sim4-0.0.20121010' cc -o sim4 -I. -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/sim4-0.0.20121010=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -O2 -Wall `LC_ALL=C ls *.c` -lm -Wl,-z,relro Xtend1.c:12:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 12 | static const char rcsid[] = | ^~~~~ align.c:13:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 13 | static const char rcsid[] = | ^~~~~ align.c: In function 'align_path': align.c:250:13: warning: 'head2' may be used uninitialized [-Wmaybe-uninitialized] 250 | if (head2) *tail = tail2; | ^~~~~ align.c:27:38: note: 'head2' declared here 27 | edit_script *head1, *tail1, *head2, *tail2; | ^~~~~ args.c:7:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 7 | static const char rcsid[] = | ^~~~~ discrim.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ dna.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ encoding.c:52:20: warning: 'osx_linker_bug' defined but not used [-Wunused-variable] 52 | static const char *osx_linker_bug = ""; | ^~~~~~~~~~~~~~ encoding.c:3:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 3 | static const char rcsid[] = | ^~~~~ misc.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ poly.c: In function 'remove_polyA_back': poly.c:108:29: warning: variable 'prev' set but not used [-Wunused-but-set-variable] 108 | Exon *t, *exons_tail, *prev; /* start from Lblock */ | ^~~~ poly.c: At top level: poly.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = "$Id: poly.c,v 1.5 2002/03/03 23:29:48 florea Exp $"; | ^~~~~ prnt.c:10:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 10 | static const char rcsid[] = | ^~~~~ seq.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ seq_read.c:9:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 9 | static const char rcsid[] = | ^~~~~ sim4.init.c: In function 'cds_range': sim4.init.c:672:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:672:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 672 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c:673:6: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^~ sim4.init.c:673:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 673 | if (*s!='.') fatal ("Illegal CDS specification."); s++; | ^ sim4.init.c: At top level: sim4.init.c:61:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 61 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'find_ends': sim4b1.c:1523:27: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~ sim4b1.c:1523:57: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 1523 | if (j>=j0) return (i-(j-j0)); break; | ^~~~~ sim4b1.c: At top level: sim4b1.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ sim4b1.c: In function 'print_pipmaker_exons': sim4b1.c:1386:11: warning: 'From' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:8: note: 'From' was declared here 1307 | int From, To, cov, ori; | ^~~~ sim4b1.c:1386:11: warning: 'To' may be used uninitialized [-Wmaybe-uninitialized] 1386 | printf("+ %d %d\n", From, To); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ sim4b1.c:1307:14: note: 'To' was declared here 1307 | int From, To, cov, ori; | ^~ splice.c: In function 'splice': splice.c:45:67: warning: variable 'keep_Gi' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c:45:58: warning: variable 'keep_Ci' set but not used [-Wunused-but-set-variable] 45 | int maxCscore, maxGscore, Gxs, Gxe, Gy, Cxs, Cxe, Cy, keep_Ci, keep_Gi; | ^~~~~~~ splice.c: At top level: splice.c:8:19: warning: 'rcsid' defined but not used [-Wunused-const-variable=] 8 | static const char rcsid[] = | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/sim4-0.0.20121010' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs dh_auto_install --destdir=debian/sim4/ dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'sim4' in '../sim4_0.0.20121010-8_arm64.deb'. dpkg-deb: building package 'sim4-dbgsym' in '../sim4-dbgsym_0.0.20121010-8_arm64.deb'. dpkg-genbuildinfo --build=binary -O../sim4_0.0.20121010-8_arm64.buildinfo dpkg-genchanges --build=binary -O../sim4_0.0.20121010-8_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2579296 and its subdirectories I: Current time: Sat Nov 23 08:36:55 +14 2024 I: pbuilder-time-stamp: 1732300615 + false + set +x Fri Nov 22 18:36:55 UTC 2024 I: Signing ./b2/sim4_0.0.20121010-8_arm64.buildinfo as sim4_0.0.20121010-8_arm64.buildinfo.asc Fri Nov 22 18:36:55 UTC 2024 I: Signed ./b2/sim4_0.0.20121010-8_arm64.buildinfo as ./b2/sim4_0.0.20121010-8_arm64.buildinfo.asc Fri Nov 22 18:36:55 UTC 2024 - build #2 for sim4/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Nov 22 18:36:55 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-XkrvZcG0, removing. /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:36 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:36 b2 -rw------- 1 jenkins jenkins 27317 Nov 22 18:36 rbuildlog.DefIsyE -rw-r--r-- 1 jenkins jenkins 1978 Dec 4 2020 sim4_0.0.20121010-8.dsc /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1: total 836 -rw-r--r-- 1 jenkins jenkins 23918 Nov 22 18:36 build.log -rw-r--r-- 1 jenkins jenkins 110984 Nov 22 18:36 sim4-dbgsym_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 315540 Nov 22 18:36 sim4_0.0.20121010-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Nov 22 18:36 sim4_0.0.20121010-8.dsc -rw-r--r-- 1 jenkins jenkins 4967 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5849 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1484 Nov 22 18:36 sim4_0.0.20121010-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 356080 Nov 22 18:36 sim4_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1363 Nov 22 18:36 sim4_0.0.20121010-8_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2: total 828 -rw-r--r-- 1 jenkins jenkins 25861 Nov 22 18:36 build.log -rw-r--r-- 1 jenkins jenkins 110984 Nov 22 18:36 sim4-dbgsym_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 315540 Nov 22 18:36 sim4_0.0.20121010-8.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1978 Nov 22 18:36 sim4_0.0.20121010-8.dsc -rw-r--r-- 1 jenkins jenkins 4967 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5849 Nov 22 18:36 sim4_0.0.20121010-8_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1484 Nov 22 18:36 sim4_0.0.20121010-8_arm64.changes -rw-r--r-- 1 jenkins jenkins 356080 Nov 22 18:36 sim4_0.0.20121010-8_arm64.deb -rw-r--r-- 1 jenkins jenkins 1363 Nov 22 18:36 sim4_0.0.20121010-8_source.changes Fri Nov 22 18:36:56 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Nov 22 18:36:57 UTC 2024 I: sim4_0.0.20121010-8_arm64.changes: Format: 1.8 Date: Fri, 04 Dec 2020 15:29:21 +0100 Source: sim4 Binary: sim4 sim4-dbgsym Architecture: arm64 Version: 0.0.20121010-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: sim4 - tool for aligning cDNA and genomic DNA Closes: 962117 Changes: sim4 (0.0.20121010-8) unstable; urgency=medium . * Nelson A. de Oliveira has retired so remove him from Uploaders (thanks Nelson for your work on this package) Closes: #962117 Checksums-Sha1: 166a71911dd1845315e63ccc5c026a79d22cfbcf 110984 sim4-dbgsym_0.0.20121010-8_arm64.deb 68304f0a9ce018cada8f8717da50e632f8fb93aa 4967 sim4_0.0.20121010-8_arm64.buildinfo c3d8dc62f14a9ddacfcb7d48f2513a2239c0e6c3 356080 sim4_0.0.20121010-8_arm64.deb Checksums-Sha256: aff17537b9ef634bcec58bc7f072c91506d03fefab82b5b3f82080f795f3d434 110984 sim4-dbgsym_0.0.20121010-8_arm64.deb d136e554de47c4c9f3c5995fee1bde0528f09878bb960bac936d9bdf2503a85e 4967 sim4_0.0.20121010-8_arm64.buildinfo 49a73a0b1404c634f79b8685a45f0efaf4e0e05d8f845ef82a2e9dc805b1c493 356080 sim4_0.0.20121010-8_arm64.deb Files: f5a010596fe7d1672b2ac445d8dba7d5 110984 debug optional sim4-dbgsym_0.0.20121010-8_arm64.deb de72fcee09b3e051c6d59bfcb55ff228 4967 science optional sim4_0.0.20121010-8_arm64.buildinfo 5e2bb047df5a8f64e84488eeeae11086 356080 science optional sim4_0.0.20121010-8_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sim4_0.0.20121010-8.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sim4_0.0.20121010-8.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/sim4_0.0.20121010-8.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/sim4_0.0.20121010-8.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/sim4_0.0.20121010-8_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sim4_0.0.20121010-8.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 18:36:17.743705564 +0000 +++ b2/build.log 2024-11-22 18:36:56.141963333 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 25 12:58:46 -12 2025 -I: pbuilder-time-stamp: 1766710726 +I: Current time: Sat Nov 23 08:36:21 +14 2024 +I: pbuilder-time-stamp: 1732300581 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -29,52 +29,84 @@ dpkg-source: info: applying compilation_order.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 22 18:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='63fa7ed81621429e9822ca6d9656f01c' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='3097945' - PS1='# ' - PS2='> ' + INVOCATION_ID=77e7ebba2c2f4d87b1239b75d8a8122a + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=2579296 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_DI4N --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1 --logfile b1/build.log sim4_0.0.20121010-8.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/pbuilderrc_vhCn --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2 --logfile b2/build.log sim4_0.0.20121010-8.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/3097945/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -139,7 +171,7 @@ Get: 27 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] -Fetched 19.4 MB in 0s (118 MB/s) +Fetched 19.4 MB in 0s (149 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -270,7 +302,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/sim4-0.0.20121010/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../sim4_0.0.20121010-8_source.changes +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/sim4-0.0.20121010/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../sim4_0.0.20121010-8_source.changes dpkg-buildpackage: info: source package sim4 dpkg-buildpackage: info: source version 0.0.20121010-8 dpkg-buildpackage: info: source distribution unstable @@ -432,12 +468,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/2579296/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/3097945 and its subdirectories -I: Current time: Thu Dec 25 12:59:16 -12 2025 -I: pbuilder-time-stamp: 1766710756 +I: removing directory /srv/workspace/pbuilder/2579296 and its subdirectories +I: Current time: Sat Nov 23 08:36:55 +14 2024 +I: pbuilder-time-stamp: 1732300615 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sim4_0.0.20121010-8.diff: 66.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/sim4_0.0.20121010-8.diff.gz b2/build.log: 74.7% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.5% -- replaced with stdout Fri Nov 22 18:36:58 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_sim4_trixie_arm64_1732300618 + touch /var/log/reproducible-builds/diffoscope_stamp_sim4_trixie_arm64_1732300618 + RESULT=0 + systemd-run '--description=diffoscope on sim4/0.0.20121010-8 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_23-67440 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq --run-session -c jenkins-reproducible-trixie-diffoscope-2b680361-2b6c-4cca-83cc-d8b088009b5e -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/dbd-tmp-V5Mxpy5 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1/sim4_0.0.20121010-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2/sim4_0.0.20121010-8_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_23-67440.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/sim4_0.0.20121010-8.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b1/sim4_0.0.20121010-8_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.QmLi6Oaq/b2/sim4_0.0.20121010-8_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.336s) 0.336s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 634ms CPU time consumed: 636ms _ _ _ ___(_)_ __ ___ | || | / __| | '_ ` _ \| || |_ \__ \ | | | | | |__ _| |___/_|_| |_| |_| |_| Fri Nov 22 18:36:59 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 18:36:59 UTC 2024 I: sim4 from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 18:36:59] INFO: Starting at 2024-11-22 18:36:59.663233 [2024-11-22 18:36:59] INFO: Generating the pages of 1 package(s) [2024-11-22 18:37:00] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/sim4 didn't produce a buildlog, even though it has been built. [2024-11-22 18:37:00] INFO: Finished at 2024-11-22 18:37:00.130731, took: 0:00:00.467504 Fri Nov 22 18:37:00 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/sim4.html Fri Nov 22 18:37:00 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 18:37:00 UTC 2024 I: Submitting 8.0K b1/sim4_0.0.20121010-8_arm64.buildinfo.asc https://buildinfo.debian.net/68304f0a9ce018cada8f8717da50e632f8fb93aa/sim4_0.0.20121010-8_arm64 Fri Nov 22 18:37:01 UTC 2024 I: Submitting 8.0K b2/sim4_0.0.20121010-8_arm64.buildinfo.asc https://buildinfo.debian.net/eb36e9c7142c62519e739d7fe484ef5e2a0ab978/sim4_0.0.20121010-8_arm64 Fri Nov 22 18:37:02 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 18:37:02 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 18:37:02 UTC 2024 I: Removing signed sim4_0.0.20121010-8_arm64.buildinfo.asc files: removed './b1/sim4_0.0.20121010-8_arm64.buildinfo.asc' removed './b2/sim4_0.0.20121010-8_arm64.buildinfo.asc' 1732300622 arm64 trixie sim4 Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sim4_0.0.20121010-8.rbuild.log: 72.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/sim4_0.0.20121010-8.rbuild.log.gz [2024-11-22 18:37:02] INFO: Starting at 2024-11-22 18:37:02.477738 [2024-11-22 18:37:02] INFO: Generating the pages of 1 package(s) [2024-11-22 18:37:02] INFO: Finished at 2024-11-22 18:37:02.922661, took: 0:00:00.444930 All cleanup done. Fri Nov 22 18:37:03 UTC 2024 - total duration: 0h 1m 19s. Fri Nov 22 18:37:03 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-pHmLeciz, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 22.880s CPU time consumed: 7.122s