Running as unit: rb-build-arm64_24-62448.service ==================================================================================== Fri Nov 22 14:34:12 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_24) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Fri Nov 22 14:34:12 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-gqzls5jT" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 14:34:12 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 14:34:12 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-UsJ2qI' Fri Nov 22 14:34:13 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 14:34:13 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-ILXipQ' ok, let's check if libbio-cluster-perl is building anywhere yet… ok, libbio-cluster-perl is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of libbio-cluster-perl in unstable on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Nov 22 14:34:36 UTC 2024 I: starting to build libbio-cluster-perl/unstable/arm64 on jenkins on '2024-11-22 14:34' Fri Nov 22 14:34:36 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/62448/console.log 1732286076 arm64 unstable libbio-cluster-perl Fri Nov 22 14:34:36 UTC 2024 I: Downloading source for unstable/libbio-cluster-perl=1.7.3-6 --2024-11-22 14:34:36-- http://deb.debian.org/debian/pool/main/libb/libbio-cluster-perl/libbio-cluster-perl_1.7.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-cluster-perl_1.7.3-6.dsc’ 0K .. 100% 284M=0s 2024-11-22 14:34:36 (284 MB/s) - ‘libbio-cluster-perl_1.7.3-6.dsc’ saved [2201/2201] --2024-11-22 14:34:36-- http://deb.debian.org/debian/pool/main/libb/libbio-cluster-perl/libbio-cluster-perl_1.7.3-6.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2201 (2.1K) [text/prs.lines.tag] Saving to: ‘libbio-cluster-perl_1.7.3-6.dsc’ 0K .. 100% 284M=0s 2024-11-22 14:34:36 (284 MB/s) - ‘libbio-cluster-perl_1.7.3-6.dsc’ saved [2201/2201] Fri Nov 22 14:34:36 UTC 2024 I: libbio-cluster-perl_1.7.3-6.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Maintainer: Debian Med Packaging Team Uploaders: Michael R. Crusoe Homepage: https://metacpan.org/release/Bio-Cluster Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libbio-cluster-perl Vcs-Git: https://salsa.debian.org/med-team/libbio-cluster-perl.git Testsuite: autopkgtest-pkg-perl Build-Depends: debhelper-compat (= 13) Build-Depends-Indep: perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl Package-List: libbio-cluster-perl deb perl optional arch=all Checksums-Sha1: fd457abb417cd02daa2d9fd679f74aa372974e08 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 3ad3a0be46ebcac0abd0501a052975daad9f909c 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Checksums-Sha256: 1967fb3899b92f245b5bf6cb64ef076fc3f8427b1a96ca5f7b74d220b6191fbb 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 9ba3e4d2ad5f9d3b62b5156b8e9e05949ab1c267c0f495349852bbe7260dd153 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz Files: 9a1b88476a3fe576ca6749b98aff3453 58304 libbio-cluster-perl_1.7.3.orig.tar.gz 0aba216206f1d7d942ae86057d7f1b08 2296 libbio-cluster-perl_1.7.3-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmJAOAoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdpg8g//WvwchPxH77MokJHH4sPOQovPLwnD C6bCFgzH7dlNNMf39cdS9mn4V1SwIRLU22gp6a3F9qii+yaxLO+ErCkC9HSRL25L O1kPaJP3VGVswKkTgMqwAB3nIEzjVO6rZgjrwfRB194cno5Y/Y+8z3Fa6Dfj+cWP AWR6BwBFlcdOXMU4M9CMC6oyesyKZnDmV7TBxGg0q/bhxp4JVa26anbRy5pJjGR3 vlMXkwiCARgWKwx16HJFVAxsZrPuScqfPLV2KmW26rATr5nkRfbw7H3ZmZ7WWHVG 5ApAbU5Ijpu+Vf1G+vL4Qv5dBkjVodBy4oEL96l0lm634CockjgCbSoNBD9dxA0s yzKD+xgelORTTs36kQVcJpaje/IfRViSXel58tO8P8rYdAAQuVeJYgH2uMFciHNQ Q7zZ5gW6D/h70Q7tOncRoiWLNA5bkfRBPWkTshrjhIk/iHyLyl/9JgCuSes+BUeT biAqM1/HOfd2YZ9QRtqeA9VdWPIEGmKEQ7cflg9mEtNQDBtqkI9konvjrcAEJx+T krw5J11UFv75kBcVH8IqaTNBGHJGDBQsBPcj2Qlu9LZrWHR5ryDBS+CPqnJLYspS CVTHiDQ78x1nzeBIRaZ9vkyD8mHuOVB6zcQkB+sly+3ME6kuzSpU4zUo99vjpxQR Cnjt0IwiOjC+IBA= =sGra -----END PGP SIGNATURE----- Fri Nov 22 14:34:36 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 14:34:36 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Nov 22 14:34:36 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Nov 22 14:34:36 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 14:34:36 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-bmWaeO' ==================================================================================== Fri Nov 22 14:34:38 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 libbio-cluster-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV 1.7.3-6" as arguments. Fri Nov 22 14:34:38 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-Ft0Tqd3t" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 14:34:39 UTC 2024 I: Downloading source for unstable/libbio-cluster-perl=1.7.3-6 Reading package lists... NOTICE: 'libbio-cluster-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-cluster-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-cluster-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 62.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (dsc) [2201 B] Get:2 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (tar) [58.3 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (diff) [2296 B] Fetched 62.8 kB in 0s (2049 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-cluster-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-cluster-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-cluster-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 62.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (dsc) [2201 B] Get:2 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (tar) [58.3 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (diff) [2296 B] Fetched 62.8 kB in 0s (2049 kB/s) Download complete and in download only mode ============================================================================= Building libbio-cluster-perl in unstable on arm64 on codethink04-arm64 now. Date: Fri Nov 22 14:34:39 GMT 2024 Date UTC: Fri Nov 22 14:34:39 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 02:34:39 -12 2024 I: pbuilder-time-stamp: 1732286079 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-cluster-perl_1.7.3-6.dsc] I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz] I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 27 10:10:18 2022 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3 dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='00d23eb333bd4fcab9b354b433515bd8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2407796' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_2gzr --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however: Package libbio-variation-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 98.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libxml-parser-perl arm64 2.47-1+b3 [197 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 26.5 MB in 0s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... 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Setting up bsdextrautils (2.40.2-11) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Cluster Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..10 ok 1 - Bio/Cluster.pm loaded ok ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok ok 3 - Bio/Cluster/FamilyI.pm loaded ok ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok ok 5 - Bio/Cluster/UniGene.pm loaded ok ok 6 - Bio/Cluster/UniGeneI.pm loaded ok ok 7 - Bio/ClusterI.pm loaded ok ok 8 - Bio/ClusterIO.pm loaded ok ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok ok 10 - Bio/ClusterIO/unigene.pm loaded ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/Cluster-UniGene.t .... 1..2 ok 1 - use Bio::Cluster::UniGene; ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI' ok t/ClusterIO-unigene.t .. 1..73 ok 1 - use Bio::ClusterIO; ok 2 - new Bio::ClusterIO object defined ok 3 ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI' ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI' ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 49 ok 50 ok 51 - annotation object defined ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 67 ok 68 - next cluster ok 69 ok 70 ok 71 ok 72 ok 73 ok t/ClusterIO.t .......... 1..12 ok 1 - use Bio::ClusterIO; ok 2 - use Bio::Cluster::ClusterFactory; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok t/SequenceFamily.t ..... 1..17 ok 1 - use Bio::SeqIO; ok 2 - use Bio::Cluster::SequenceFamily; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok All tests successful. Files=7, Tests=114, 2 wallclock secs ( 0.06 usr 0.03 sys + 1.20 cusr 0.27 csys = 1.56 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-cluster-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2407796 and its subdirectories I: Current time: Fri Nov 22 02:35:09 -12 2024 I: pbuilder-time-stamp: 1732286109 Fri Nov 22 14:35:09 UTC 2024 I: Signing ./b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo as libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Fri Nov 22 14:35:09 UTC 2024 I: Signed ./b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo as ./b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Fri Nov 22 14:35:09 UTC 2024 - build #1 for libbio-cluster-perl/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Nov 22 14:35:09 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-Ft0Tqd3t, removing. /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:34 b2 -rw-r--r-- 1 jenkins jenkins 2201 Mar 27 2022 libbio-cluster-perl_1.7.3-6.dsc -rw------- 1 jenkins jenkins 3398 Nov 22 14:34 rbuildlog.PevBewn /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1: total 128 -rw-r--r-- 1 jenkins jenkins 43014 Nov 22 14:35 build.log -rw-r--r-- 1 jenkins jenkins 2296 Nov 22 14:35 libbio-cluster-perl_1.7.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Nov 22 14:35 libbio-cluster-perl_1.7.3-6.dsc -rw-r--r-- 1 jenkins jenkins 50676 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 6323 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7205 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1306 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2: total 0 Fri Nov 22 14:35:10 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 02:34:39 -12 2024 I: pbuilder-time-stamp: 1732286079 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-cluster-perl_1.7.3-6.dsc] I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz] I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 27 10:10:18 2022 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3 dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='00d23eb333bd4fcab9b354b433515bd8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2407796' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_2gzr --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however: Package libbio-variation-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 98.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libxml-parser-perl arm64 2.47-1+b3 [197 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 26.5 MB in 0s (132 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../13-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. 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Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../25-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../27-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../33-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../34-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../35-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../36-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../37-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../38-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../39-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../40-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../41-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../42-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../43-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../44-libhtml-parser-perl_3.83-1+b1_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.83-1+b1) ... Selecting previously unselected package libhtml-tree-perl. 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Preparing to unpack .../56-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../57-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../58-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../59-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../60-libxml-parser-perl_2.47-1+b3_arm64.deb ... Unpacking libxml-parser-perl (2.47-1+b3) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../61-libxml-twig-perl_1%3a3.52-3_all.deb ... Unpacking libxml-twig-perl (1:3.52-3) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../62-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package libbio-variation-perl. Preparing to unpack .../63-libbio-variation-perl_1.7.5-3_all.deb ... Unpacking libbio-variation-perl (1.7.5-3) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../64-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../65-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../66-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../67-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libsub-uplevel-perl. Preparing to unpack .../68-libsub-uplevel-perl_0.2800-3_all.deb ... Unpacking libsub-uplevel-perl (0.2800-3) ... Selecting previously unselected package libtest-deep-perl. Preparing to unpack .../69-libtest-deep-perl_1.204-1_all.deb ... Unpacking libtest-deep-perl (1.204-1) ... Selecting previously unselected package libtext-diff-perl. Preparing to unpack .../70-libtext-diff-perl_1.45-2_all.deb ... Unpacking libtext-diff-perl (1.45-2) ... Selecting previously unselected package libtest-differences-perl. Preparing to unpack .../71-libtest-differences-perl_0.71-1_all.deb ... Unpacking libtest-differences-perl (0.71-1) ... Selecting previously unselected package libtest-exception-perl. Preparing to unpack .../72-libtest-exception-perl_0.43-3_all.deb ... Unpacking libtest-exception-perl (0.43-3) ... Selecting previously unselected package libtest-warn-perl. Preparing to unpack .../73-libtest-warn-perl_0.37-2_all.deb ... Unpacking libtest-warn-perl (0.37-2) ... Selecting previously unselected package libtest-most-perl. Preparing to unpack .../74-libtest-most-perl_0.38-1_all.deb ... Unpacking libtest-most-perl (0.38-1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../75-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../76-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../77-libxml-sax-perl_1.02+dfsg-4_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-4) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Cluster Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..10 ok 1 - Bio/Cluster.pm loaded ok ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok ok 3 - Bio/Cluster/FamilyI.pm loaded ok ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok ok 5 - Bio/Cluster/UniGene.pm loaded ok ok 6 - Bio/Cluster/UniGeneI.pm loaded ok ok 7 - Bio/ClusterI.pm loaded ok ok 8 - Bio/ClusterIO.pm loaded ok ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok ok 10 - Bio/ClusterIO/unigene.pm loaded ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/Cluster-UniGene.t .... 1..2 ok 1 - use Bio::Cluster::UniGene; ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI' ok t/ClusterIO-unigene.t .. 1..73 ok 1 - use Bio::ClusterIO; ok 2 - new Bio::ClusterIO object defined ok 3 ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI' ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI' ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 49 ok 50 ok 51 - annotation object defined ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 67 ok 68 - next cluster ok 69 ok 70 ok 71 ok 72 ok 73 ok t/ClusterIO.t .......... 1..12 ok 1 - use Bio::ClusterIO; ok 2 - use Bio::Cluster::ClusterFactory; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok t/SequenceFamily.t ..... 1..17 ok 1 - use Bio::SeqIO; ok 2 - use Bio::Cluster::SequenceFamily; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok All tests successful. Files=7, Tests=114, 2 wallclock secs ( 0.06 usr 0.03 sys + 1.20 cusr 0.27 csys = 1.56 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-cluster-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2407796 and its subdirectories I: Current time: Fri Nov 22 02:35:09 -12 2024 I: pbuilder-time-stamp: 1732286109 Fri Nov 22 14:35:11 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Nov 22 14:35:11 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Nov 22 14:35:11 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 14:35:11 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-PHALNt' ==================================================================================== Thu Dec 25 20:58:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 libbio-cluster-perl unstable /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV 1.7.3-6" as arguments. Thu Dec 25 20:58:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-k5pSq09T" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Dec 25 20:58:13 UTC 2025 I: Downloading source for unstable/libbio-cluster-perl=1.7.3-6 Reading package lists... NOTICE: 'libbio-cluster-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-cluster-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-cluster-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 62.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (dsc) [2201 B] Get:2 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (tar) [58.3 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (diff) [2296 B] Fetched 62.8 kB in 0s (3687 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'libbio-cluster-perl' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libbio-cluster-perl.git Please use: git clone https://salsa.debian.org/med-team/libbio-cluster-perl.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 62.8 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (dsc) [2201 B] Get:2 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (tar) [58.3 kB] Get:3 http://deb.debian.org/debian unstable/main libbio-cluster-perl 1.7.3-6 (diff) [2296 B] Fetched 62.8 kB in 0s (3687 kB/s) Download complete and in download only mode ============================================================================= Re-Building libbio-cluster-perl in unstable on arm64 on codethink03-arm64 now. Date: Thu Dec 25 20:58:13 GMT 2025 Date UTC: Thu Dec 25 20:58:13 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_1XSu + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' libbio-cluster-perl = debian-installer -o libbio-cluster-perl = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' libbio-cluster-perl = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_1XSu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2 --logfile b2/build.log libbio-cluster-perl_1.7.3-6.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 26 10:58:13 +14 2025 I: pbuilder-time-stamp: 1766696293 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [libbio-cluster-perl_1.7.3-6.dsc] I: copying [./libbio-cluster-perl_1.7.3.orig.tar.gz] I: copying [./libbio-cluster-perl_1.7.3-6.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Mar 27 10:10:18 2022 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libbio-cluster-perl_1.7.3-6.dsc: no acceptable signature found dpkg-source: info: extracting libbio-cluster-perl in libbio-cluster-perl-1.7.3 dpkg-source: info: unpacking libbio-cluster-perl_1.7.3.orig.tar.gz dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 25 20:58 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=ce64ac26cf5d4ff5a86087d67143b5df LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3583584 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_1XSu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2 --logfile b2/build.log libbio-cluster-perl_1.7.3-6.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), perl, libbio-perl-perl, libxml-sax-perl, libtest-most-perl, libbio-variation-perl dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libbio-perl-perl; however: Package libbio-perl-perl is not installed. pbuilder-satisfydepends-dummy depends on libxml-sax-perl; however: Package libxml-sax-perl is not installed. pbuilder-satisfydepends-dummy depends on libtest-most-perl; however: Package libtest-most-perl is not installed. pbuilder-satisfydepends-dummy depends on libbio-variation-perl; however: Package libbio-variation-perl is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libalgorithm-diff-perl{a} libarchive-zip-perl{a} libbio-perl-perl{a} libbio-variation-perl{a} libcapture-tiny-perl{a} libclass-data-inheritable-perl{a} libclone-perl{a} libdata-stag-perl{a} libdebhelper-perl{a} libdevel-stacktrace-perl{a} libelf1t64{a} libencode-locale-perl{a} libexception-class-perl{a} libexpat1{a} libfile-listing-perl{a} libfile-stripnondeterminism-perl{a} libhtml-parser-perl{a} libhtml-tagset-perl{a} libhtml-tree-perl{a} libhttp-cookies-perl{a} libhttp-date-perl{a} libhttp-message-perl{a} libhttp-negotiate-perl{a} libicu72{a} libio-html-perl{a} libio-socket-ssl-perl{a} libio-string-perl{a} liblwp-mediatypes-perl{a} liblwp-protocol-https-perl{a} libmagic-mgc{a} libmagic1t64{a} libnet-http-perl{a} libnet-ssleay-perl{a} libpipeline1{a} libsub-uplevel-perl{a} libtest-deep-perl{a} libtest-differences-perl{a} libtest-exception-perl{a} libtest-most-perl{a} libtest-warn-perl{a} libtext-diff-perl{a} libtimedate-perl{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} liburi-perl{a} libwww-perl{a} libwww-robotrules-perl{a} libxml-namespacesupport-perl{a} libxml-parser-perl{a} libxml-sax-base-perl{a} libxml-sax-perl{a} libxml-twig-perl{a} libxml-writer-perl{a} libxml2{a} m4{a} man-db{a} netbase{a} openssl{a} perl-openssl-defaults{a} po-debconf{a} sensible-utils{a} ucf{a} The following packages are RECOMMENDED but will NOT be installed: bioperl-run curl libace-perl libalgorithm-diff-xs-perl libalgorithm-munkres-perl libarchive-cpio-perl libarray-compare-perl libbio-asn1-entrezgene-perl libbio-perl-run-perl libconvert-binary-c-perl libdata-dump-perl libdbd-mysql-perl libdbd-pg-perl libdbd-sqlite3-perl libgd-perl libgraph-perl libgraphviz-perl libhtml-form-perl libhtml-format-perl libhtml-tableextract-perl libhttp-daemon-perl libio-compress-brotli-perl liblist-moreutils-perl libltdl-dev libmail-sendmail-perl libmailtools-perl libmldbm-perl libpostscript-perl libset-scalar-perl libsoap-lite-perl libsort-naturally-perl libspreadsheet-parseexcel-perl libspreadsheet-writeexcel-perl libsvg-graph-perl libsvg-perl libtext-iconv-perl libtie-ixhash-perl libxml-dom-xpath-perl libxml-libxml-perl libxml-libxslt-perl libxml-perl libxml-sax-expat-perl libxml-sax-writer-perl libxml-simple-perl libxml-xpath-perl libxml-xpathengine-perl lynx perl-tk wget 0 packages upgraded, 78 newly installed, 0 to remove and 0 not upgraded. Need to get 26.5 MB of archives. After unpacking 98.3 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 libtool all 2.4.7-8 [517 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 26 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.20 [915 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libalgorithm-diff-perl all 1.201-1 [43.3 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libdata-stag-perl all 0.14-3 [448 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbio-perl-perl all 1.7.8-1 [2603 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 42 http://deb.debian.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b1 [97.5 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get: 54 http://deb.debian.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-2 [323 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 libxml-parser-perl arm64 2.47-1+b3 [197 kB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libxml-twig-perl all 1:3.52-3 [177 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libxml-writer-perl all 0.900-2 [26.8 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 libbio-variation-perl all 1.7.5-3 [72.6 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get: 67 http://deb.debian.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 68 http://deb.debian.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 libsub-uplevel-perl all 0.2800-3 [14.0 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 libtest-deep-perl all 1.204-1 [52.9 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 libtext-diff-perl all 1.45-2 [27.2 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 libtest-differences-perl all 0.71-1 [17.9 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 libtest-exception-perl all 0.43-3 [16.9 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 libtest-warn-perl all 0.37-2 [14.5 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libtest-most-perl all 0.38-1 [25.1 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Fetched 26.5 MB in 1s (52.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) Preparing to unpack .../00-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../13-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package m4. Preparing to unpack .../14-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../15-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../16-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../17-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../18-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../19-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../20-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../21-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../22-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../23-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../24-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../25-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../26-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../27-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../28-libxml2_2.12.7+dfsg+really2.9.14-0.2+b1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Selecting previously unselected package gettext. Preparing to unpack .../29-gettext_0.22.5-2_arm64.deb ... Unpacking gettext (0.22.5-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../30-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../31-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../32-debhelper_13.20_all.deb ... Unpacking debhelper (13.20) ... Selecting previously unselected package libalgorithm-diff-perl. Preparing to unpack .../33-libalgorithm-diff-perl_1.201-1_all.deb ... Unpacking libalgorithm-diff-perl (1.201-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../34-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libdata-stag-perl. Preparing to unpack .../35-libdata-stag-perl_0.14-3_all.deb ... Unpacking libdata-stag-perl (0.14-3) ... Selecting previously unselected package libbio-perl-perl. Preparing to unpack .../36-libbio-perl-perl_1.7.8-1_all.deb ... Unpacking libbio-perl-perl (1.7.8-1) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../37-libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../38-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../39-libencode-locale-perl_1.05-3_all.deb ... 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Preparing to unpack .../56-liblwp-protocol-https-perl_6.14-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.14-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../57-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../58-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../59-libwww-perl_6.77-1_all.deb ... Unpacking libwww-perl (6.77-1) ... Selecting previously unselected package libxml-parser-perl. Preparing to unpack .../60-libxml-parser-perl_2.47-1+b3_arm64.deb ... Unpacking libxml-parser-perl (2.47-1+b3) ... Selecting previously unselected package libxml-twig-perl. Preparing to unpack .../61-libxml-twig-perl_1%3a3.52-3_all.deb ... Unpacking libxml-twig-perl (1:3.52-3) ... Selecting previously unselected package libxml-writer-perl. Preparing to unpack .../62-libxml-writer-perl_0.900-2_all.deb ... Unpacking libxml-writer-perl (0.900-2) ... Selecting previously unselected package libbio-variation-perl. Preparing to unpack .../63-libbio-variation-perl_1.7.5-3_all.deb ... Unpacking libbio-variation-perl (1.7.5-3) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../64-libcapture-tiny-perl_0.48-2_all.deb ... Unpacking libcapture-tiny-perl (0.48-2) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../65-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../66-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. 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Setting up bsdextrautils (2.40.2-11) ... Setting up libtest-deep-perl (1.204-1) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libalgorithm-diff-perl (1.201-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdebhelper-perl (13.20) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up file (1:5.45-3+b1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libtext-diff-perl (1.45-2) ... Setting up libxml-writer-perl (0.900-2) ... Setting up libio-html-perl (1.004-3) ... Setting up autopoint (0.22.5-2) ... Setting up autoconf (2.72-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up dwz (0.15-1+b1) ... Setting up libdata-stag-perl (0.14-3) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libsub-uplevel-perl (0.2800-3) ... Setting up netbase (6.4) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libbio-perl-perl (1.7.8-1) ... Setting up openssl (3.3.2-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up liburi-perl (5.30-1) ... Setting up libnet-ssleay-perl:arm64 (1.94-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up gettext (0.22.5-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libtool (2.4.7-8) ... Setting up libtest-warn-perl (0.37-2) ... Setting up libtest-differences-perl (0.71-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libtest-exception-perl (0.43-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up groff-base (1.23.0-5) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b1) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libtest-most-perl (0.38-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.20) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.77-1) ... Setting up libxml-parser-perl (2.47-1+b3) ... Setting up libxml-twig-perl (1:3.52-3) ... Setting up libbio-variation-perl (1.7.5-3) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure /usr/bin/perl Makefile.PL INSTALLDIRS=vendor "OPTIMIZE=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2" "LD=aarch64-linux-gnu-gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/libbio-cluster-perl-1.7.3=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro" Checking if your kit is complete... Looks good Generating a Unix-style Makefile Writing Makefile for Bio::Cluster Writing MYMETA.yml and MYMETA.json dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test make -j12 test TEST_VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' PERL_DL_NONLAZY=1 "/usr/bin/perl" "-MExtUtils::Command::MM" "-MTest::Harness" "-e" "undef *Test::Harness::Switches; test_harness(1, 'blib/lib', 'blib/arch')" t/*.t t/00-compile.t ......... 1..10 ok 1 - Bio/Cluster.pm loaded ok ok 2 - Bio/Cluster/ClusterFactory.pm loaded ok ok 3 - Bio/Cluster/FamilyI.pm loaded ok ok 4 - Bio/Cluster/SequenceFamily.pm loaded ok ok 5 - Bio/Cluster/UniGene.pm loaded ok ok 6 - Bio/Cluster/UniGeneI.pm loaded ok ok 7 - Bio/ClusterI.pm loaded ok ok 8 - Bio/ClusterIO.pm loaded ok ok 9 - Bio/ClusterIO/dbsnp.pm loaded ok ok 10 - Bio/ClusterIO/unigene.pm loaded ok ok t/author-mojibake.t .... skipped: these tests are for testing by the author t/author-pod-syntax.t .. skipped: these tests are for testing by the author t/Cluster-UniGene.t .... 1..2 ok 1 - use Bio::Cluster::UniGene; ok 2 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::AnnotatableI' ok t/ClusterIO-unigene.t .. 1..73 ok 1 - use Bio::ClusterIO; ok 2 - new Bio::ClusterIO object defined ok 3 ok 4 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 5 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::ClusterI' ok 6 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::IdentifiableI' ok 7 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::DescribableI' ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok 18 ok 19 ok 20 ok 21 ok 22 ok 23 ok 24 ok 25 ok 26 ok 27 ok 28 ok 29 ok 30 ok 31 ok 32 ok 33 ok 34 ok 35 ok 36 ok 37 ok 38 ok 39 ok 40 ok 41 ok 42 ok 43 ok 44 ok 45 ok 46 ok 47 ok 48 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 49 ok 50 ok 51 - annotation object defined ok 52 ok 53 ok 54 ok 55 ok 56 ok 57 ok 58 ok 59 ok 60 ok 61 ok 62 ok 63 ok 64 ok 65 ok 66 - An object of class 'Bio::Seq::RichSeq' isa 'Bio::PrimarySeqI' ok 67 ok 68 - next cluster ok 69 ok 70 ok 71 ok 72 ok 73 ok t/ClusterIO.t .......... 1..12 ok 1 - use Bio::ClusterIO; ok 2 - use Bio::Cluster::ClusterFactory; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok 12 - An object of class 'Bio::Cluster::UniGene' isa 'Bio::Cluster::UniGeneI' ok t/SequenceFamily.t ..... 1..17 ok 1 - use Bio::SeqIO; ok 2 - use Bio::Cluster::SequenceFamily; ok 3 ok 4 ok 5 ok 6 ok 7 ok 8 ok 9 ok 10 ok 11 ok 12 ok 13 ok 14 ok 15 ok 16 ok 17 ok All tests successful. Files=7, Tests=114, 2 wallclock secs ( 0.04 usr 0.00 sys + 0.97 cusr 0.17 csys = 1.18 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/libbio-cluster-perl/ make -j12 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGeneI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::UniGene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::SequenceFamily.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::FamilyI.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster::ClusterFactory.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::Cluster.3pm make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'libbio-cluster-perl' in '../libbio-cluster-perl_1.7.3-6_all.deb'. dpkg-genbuildinfo --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.buildinfo dpkg-genchanges --build=binary -O../libbio-cluster-perl_1.7.3-6_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3583584 and its subdirectories I: Current time: Fri Dec 26 10:59:29 +14 2025 I: pbuilder-time-stamp: 1766696369 + false + set +x Thu Dec 25 20:59:29 UTC 2025 I: Signing ./b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo as libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Thu Dec 25 20:59:29 UTC 2025 I: Signed ./b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo as ./b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc Thu Dec 25 20:59:29 UTC 2025 - build #2 for libbio-cluster-perl/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Thu Dec 25 20:59:29 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-k5pSq09T, removing. /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV: total 60 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 14:36 b2 -rw-r--r-- 1 jenkins jenkins 2201 Mar 27 2022 libbio-cluster-perl_1.7.3-6.dsc -rw------- 1 jenkins jenkins 46713 Nov 22 14:35 rbuildlog.PevBewn /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1: total 132 -rw-r--r-- 1 jenkins jenkins 43014 Nov 22 14:35 build.log -rw-r--r-- 1 jenkins jenkins 2296 Nov 22 14:35 libbio-cluster-perl_1.7.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Nov 22 14:35 libbio-cluster-perl_1.7.3-6.dsc -rw-r--r-- 1 jenkins jenkins 50676 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 6323 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7205 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1306 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 14:35 libbio-cluster-perl_1.7.3-6_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2: total 128 -rw-r--r-- 1 jenkins jenkins 44960 Nov 22 14:36 build.log -rw-r--r-- 1 jenkins jenkins 2296 Nov 22 14:36 libbio-cluster-perl_1.7.3-6.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2201 Nov 22 14:36 libbio-cluster-perl_1.7.3-6.dsc -rw-r--r-- 1 jenkins jenkins 50676 Nov 22 14:36 libbio-cluster-perl_1.7.3-6_all.deb -rw-r--r-- 1 jenkins jenkins 6323 Nov 22 14:36 libbio-cluster-perl_1.7.3-6_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7205 Nov 22 14:36 libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1306 Nov 22 14:36 libbio-cluster-perl_1.7.3-6_arm64.changes -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 14:36 libbio-cluster-perl_1.7.3-6_source.changes Fri Nov 22 14:36:30 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Nov 22 14:36:30 UTC 2024 I: libbio-cluster-perl_1.7.3-6_arm64.changes: Format: 1.8 Date: Sun, 27 Mar 2022 11:18:53 +0200 Source: libbio-cluster-perl Binary: libbio-cluster-perl Architecture: all Version: 1.7.3-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: libbio-cluster-perl - BioPerl cluster modules Changes: libbio-cluster-perl (1.7.3-6) unstable; urgency=medium . * Team upload. * d/control: depend on libxml-sax-perl, needed by needed by Bio::ClusterIO, fixing autopkgtest failure in the process. * Standards-Version: 4.6.0 (routine-update) * watch file standard 4 (routine-update) Checksums-Sha1: db9b3fb1d86b06bf92d52f5f829b3e5c3c84c951 50676 libbio-cluster-perl_1.7.3-6_all.deb 5d47574aa9e2411cd04cbccbff97320ea16eb7bb 6323 libbio-cluster-perl_1.7.3-6_arm64.buildinfo Checksums-Sha256: 51dccb50986817373f222d9d6245e3c7eab5567e3e7174f92b844f69ad700c1e 50676 libbio-cluster-perl_1.7.3-6_all.deb 5dcacbb35a5f3792647f8a340014d626c3991311032cf4370826079381ed91c6 6323 libbio-cluster-perl_1.7.3-6_arm64.buildinfo Files: 1c9f65419c5ea12bbac29d8026fc6b01 50676 perl optional libbio-cluster-perl_1.7.3-6_all.deb ee6e82735e4f451df355d3eec6978192 6323 perl optional libbio-cluster-perl_1.7.3-6_arm64.buildinfo removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-cluster-perl_1.7.3-6.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-cluster-perl_1.7.3-6.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/libbio-cluster-perl_1.7.3-6.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/libbio-cluster-perl_1.7.3-6.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/libbio-cluster-perl_1.7.3-6_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libbio-cluster-perl_1.7.3-6.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 14:35:10.774841304 +0000 +++ b2/build.log 2024-11-22 14:36:30.075250361 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 02:34:39 -12 2024 -I: pbuilder-time-stamp: 1732286079 +I: Current time: Fri Dec 26 10:58:13 +14 2025 +I: pbuilder-time-stamp: 1766696293 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -26,52 +26,84 @@ dpkg-source: info: unpacking libbio-cluster-perl_1.7.3-6.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 25 20:58 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='00d23eb333bd4fcab9b354b433515bd8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2407796' - PS1='# ' - PS2='> ' + INVOCATION_ID=ce64ac26cf5d4ff5a86087d67143b5df + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3583584 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_2gzr --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1 --logfile b1/build.log libbio-cluster-perl_1.7.3-6.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/pbuilderrc_1XSu --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2 --logfile b2/build.log libbio-cluster-perl_1.7.3-6.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2407796/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -193,7 +225,7 @@ Get: 76 http://deb.debian.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] -Fetched 26.5 MB in 0s (132 MB/s) +Fetched 26.5 MB in 1s (52.7 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package netbase. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20084 files and directories currently installed.) @@ -532,7 +564,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/libbio-cluster-perl-1.7.3/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../libbio-cluster-perl_1.7.3-6_source.changes dpkg-buildpackage: info: source package libbio-cluster-perl dpkg-buildpackage: info: source version 1.7.3-6 dpkg-buildpackage: info: source distribution unstable @@ -556,16 +592,16 @@ dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' -cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm cp lib/Bio/Cluster/FamilyI.pm blib/lib/Bio/Cluster/FamilyI.pm -cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm -cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm -cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm -cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm -cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm cp lib/Bio/Cluster/UniGeneI.pm blib/lib/Bio/Cluster/UniGeneI.pm +cp lib/Bio/Cluster/SequenceFamily.pm blib/lib/Bio/Cluster/SequenceFamily.pm +cp lib/Bio/ClusterIO/unigene.pm blib/lib/Bio/ClusterIO/unigene.pm cp lib/Bio/ClusterI.pm blib/lib/Bio/ClusterI.pm +cp lib/Bio/Cluster/ClusterFactory.pm blib/lib/Bio/Cluster/ClusterFactory.pm cp lib/Bio/ClusterIO/dbsnp.pm blib/lib/Bio/ClusterIO/dbsnp.pm +cp lib/Bio/Cluster.pm blib/lib/Bio/Cluster.pm +cp lib/Bio/Cluster/UniGene.pm blib/lib/Bio/Cluster/UniGene.pm +cp lib/Bio/ClusterIO.pm blib/lib/Bio/ClusterIO.pm Manifying 10 pod documents make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' dh_auto_test @@ -704,7 +740,7 @@ ok 17 ok All tests successful. -Files=7, Tests=114, 2 wallclock secs ( 0.06 usr 0.03 sys + 1.20 cusr 0.27 csys = 1.56 CPU) +Files=7, Tests=114, 2 wallclock secs ( 0.04 usr 0.00 sys + 0.97 cusr 0.17 csys = 1.18 CPU) Result: PASS make[1]: Leaving directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' create-stamp debian/debhelper-build-stamp @@ -713,16 +749,16 @@ make -j12 install DESTDIR=/build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl AM_UPDATE_INFO_DIR=no PREFIX=/usr make[1]: Entering directory '/build/reproducible-path/libbio-cluster-perl-1.7.3' Manifying 10 pod documents -Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster.pm +Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/dbsnp.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/ClusterIO/unigene.pm -Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGene.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/ClusterFactory.pm -Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/SequenceFamily.pm +Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/UniGeneI.pm +Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/perl5/Bio/Cluster/FamilyI.pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::unigene.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO::dbsnp.3pm Installing /build/reproducible-path/libbio-cluster-perl-1.7.3/debian/libbio-cluster-perl/usr/share/man/man3/Bio::ClusterIO.3pm @@ -756,12 +792,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3583584/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2407796 and its subdirectories -I: Current time: Fri Nov 22 02:35:09 -12 2024 -I: pbuilder-time-stamp: 1732286109 +I: removing directory /srv/workspace/pbuilder/3583584 and its subdirectories +I: Current time: Fri Dec 26 10:59:29 +14 2025 +I: pbuilder-time-stamp: 1766696369 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libbio-cluster-perl_1.7.3-6.diff: 73.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/libbio-cluster-perl_1.7.3-6.diff.gz b2/build.log: 78.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 79.0% -- replaced with stdout Fri Nov 22 14:36:31 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_libbio-cluster-perl_unstable_arm64_1732286191 + touch /var/log/reproducible-builds/diffoscope_stamp_libbio-cluster-perl_unstable_arm64_1732286191 + RESULT=0 + systemd-run '--description=diffoscope on libbio-cluster-perl/1.7.3-6 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_24-62448 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV --run-session -c jenkins-reproducible-unstable-diffoscope-2dc2526c-742e-439c-963c-69fcb2a3b286 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/dbd-tmp-ZwUDkA1 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1/libbio-cluster-perl_1.7.3-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2/libbio-cluster-perl_1.7.3-6_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_24-62448.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/libbio-cluster-perl_1.7.3-6.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b1/libbio-cluster-perl_1.7.3-6_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.vTZvE6LV/b2/libbio-cluster-perl_1.7.3-6_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.326s) 0.326s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.014s) 0.014s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 674ms CPU time consumed: 674ms _ _ _ _ _ _ _ | (_) |__ | |__ (_) ___ ___| |_ _ ___| |_ ___ _ __ _ __ ___ | | | '_ \| '_ \| |/ _ \ _____ / __| | | | / __| __/ _ \ '__|____| '_ \ / _ \ | | | |_) | |_) | | (_) |_____| (__| | |_| \__ \ || __/ | |_____| |_) | __/ |_|_|_.__/|_.__/|_|\___/ \___|_|\__,_|___/\__\___|_| | .__/ \___| |_| _ _ __| | | '__| | | | | | |_| |_| Fri Nov 22 14:36:32 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 14:36:32 UTC 2024 I: libbio-cluster-perl from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 14:36:33] INFO: Starting at 2024-11-22 14:36:33.438843 [2024-11-22 14:36:33] INFO: Generating the pages of 1 package(s) [2024-11-22 14:36:33] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/libbio-cluster-perl didn't produce a buildlog, even though it has been built. [2024-11-22 14:36:33] INFO: Finished at 2024-11-22 14:36:33.790167, took: 0:00:00.351329 Fri Nov 22 14:36:33 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/libbio-cluster-perl.html Fri Nov 22 14:36:33 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 14:36:33 UTC 2024 I: Submitting 8.0K b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc https://buildinfo.debian.net/5d47574aa9e2411cd04cbccbff97320ea16eb7bb/libbio-cluster-perl_1.7.3-6_all Fri Nov 22 14:36:34 UTC 2024 I: Submitting 8.0K b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc https://buildinfo.debian.net/7d5bf946dd06565b3f1683c1c90ea91e8cf3510c/libbio-cluster-perl_1.7.3-6_all Fri Nov 22 14:36:35 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 14:36:35 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 14:36:35 UTC 2024 I: Removing signed libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc files: removed './b1/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc' removed './b2/libbio-cluster-perl_1.7.3-6_arm64.buildinfo.asc' 1732286195 arm64 unstable libbio-cluster-perl Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-cluster-perl_1.7.3-6.rbuild.log: 76.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/libbio-cluster-perl_1.7.3-6.rbuild.log.gz [2024-11-22 14:36:35] INFO: Starting at 2024-11-22 14:36:35.910686 [2024-11-22 14:36:36] INFO: Generating the pages of 1 package(s) [2024-11-22 14:36:36] INFO: Finished at 2024-11-22 14:36:36.488330, took: 0:00:00.577654 All cleanup done. Fri Nov 22 14:36:36 UTC 2024 - total duration: 0h 2m 20s. Fri Nov 22 14:36:36 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-gqzls5jT, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 23.981s CPU time consumed: 7.297s