Running as unit: rb-build-arm64_24-62492.service ==================================================================================== Fri Nov 22 18:48:06 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_24) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Fri Nov 22 18:48:06 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-4uUCuAdy" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 18:48:06 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 18:48:06 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-UrDE80' Fri Nov 22 18:48:07 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 18:48:07 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-vyN3xV' ok, let's check if andi is building anywhere yet… ok, andi is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of andi in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Fri Nov 22 18:48:13 UTC 2024 I: starting to build andi/trixie/arm64 on jenkins on '2024-11-22 18:48' Fri Nov 22 18:48:13 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/62492/console.log 1732301293 arm64 trixie andi Fri Nov 22 18:48:13 UTC 2024 I: Downloading source for trixie/andi=0.14-3 --2024-11-22 18:48:13-- http://deb.debian.org/debian/pool/main/a/andi/andi_0.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘andi_0.14-3.dsc’ 0K .. 100% 259M=0s 2024-11-22 18:48:13 (259 MB/s) - ‘andi_0.14-3.dsc’ saved [2134/2134] --2024-11-22 18:48:13-- http://deb.debian.org/debian/pool/main/a/andi/andi_0.14-3.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2134 (2.1K) [text/prs.lines.tag] Saving to: ‘andi_0.14-3.dsc’ 0K .. 100% 259M=0s 2024-11-22 18:48:13 (259 MB/s) - ‘andi_0.14-3.dsc’ saved [2134/2134] Fri Nov 22 18:48:14 UTC 2024 I: andi_0.14-3.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: andi Binary: andi Architecture: any Version: 0.14-3 Maintainer: Debian Med Packaging Team Uploaders: Fabian Klötzl Homepage: https://github.com/EvolBioInf/andi Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/andi Vcs-Git: https://salsa.debian.org/med-team/andi.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper Package-List: andi deb science optional arch=any Checksums-Sha1: e0db2f63dffadb9c39083d4ee3baf27d9185a51b 539526 andi_0.14.orig.tar.gz aafacef8abb5e91631a51df361919f0e4cf7ddb6 11748 andi_0.14-3.debian.tar.xz Checksums-Sha256: 2c9e11524f38e74fe3f981e6acd9527c1a1ca30994a30c5e86808ba5165a25b7 539526 andi_0.14.orig.tar.gz bd713784cd911c1baddefb0048f4ff21a3679b8513438f144fd9257b7e82cfad 11748 andi_0.14-3.debian.tar.xz Files: 8e42393fa97f726880480f4d3cc9542e 539526 andi_0.14.orig.tar.gz d01434621e2b4bd82dd7df06de734b05 11748 andi_0.14-3.debian.tar.xz Dgit: 33e7c37b34d8f2d9deba4a184c0bd6fa455abf1c debian archive/debian/0.14-3 https://git.dgit.debian.org/andi -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmWP+hcUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdoUyw//e54q3sxmPXO44JhboGUEs4okgYET nAZye9VdYoG5b+YHuFFzGw1XBxtNJl9d+vk6kg5pxl9gd6Y9StPEwR4Ovv0ewpFg Rf//QaK24CjSeSXSLw+4qLAjrQ4xB1hKDXV+SjwTEmvqUHtwVlzuqZimRY9cmR7q dkdajH2vn1mGP+EnreWONkMcjAeDHbFu3N006H4aj1Gzu4f581t0IftCqH25MH2c /2ZRjQTE3JK21OW/m9j9HHahd0YImhH9dt+wjbe9U/DwCI2O5NSFnfrCtzYPnl2U hGKGBdfrdzFc/ElRA8NEs38nFRbYBoEe1GuTf91LeFfbdSOvfc0bmis/Y9MGh2oi wWrnoVIxbDpPdKSxEIkcob6WZPus7C+AzKka9XLzz/GVcHCc+3oEBzyV24o1WZgw ZYA7w1KECqhNHJ5Jp1eH6NotF7dcq7+/tdiUex4SZaOiY4eTqKTwVh9gU2Upi6/w K228wmCfGYb60VQOzxXqARxcm03oH4L60EaF25Yot7sEEeK2LX6MgB29RG6KSGiP VXL1G3wgBKhkXfWO6iE/1ORjK04Is/5/ugmnls99ei4j5CKtGripTQJ+CkeT+8Kv Ysae2+x4qs4+m+hh5Nx/3Q3QAIopp/SUHc9McsHXrbeKNe6Geyfp5oJRGs1qVT/L /OVWXNAyKWlp3C8= =02BR -----END PGP SIGNATURE----- Fri Nov 22 18:48:14 UTC 2024 I: Checking whether the package is not for us Fri Nov 22 18:48:14 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Fri Nov 22 18:48:14 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Fri Nov 22 18:48:14 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Nov 22 18:48:14 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-zXlzM6' ==================================================================================== Fri Nov 22 18:48:16 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 andi trixie /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv 0.14-3" as arguments. Fri Nov 22 18:48:16 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-IYTv9B4S" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Nov 22 18:48:16 UTC 2024 I: Downloading source for trixie/andi=0.14-3 Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian trixie/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian trixie/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (24.9 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian trixie/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian trixie/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (24.9 MB/s) Download complete and in download only mode ============================================================================= Building andi in trixie on arm64 on codethink04-arm64 now. Date: Fri Nov 22 18:48:17 GMT 2024 Date UTC: Fri Nov 22 18:48:17 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 06:48:17 -12 2024 I: pbuilder-time-stamp: 1732301297 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 30 11:08:07 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8a829739d13d44ef9fdcc3d182a66ed8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2779257' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_U3gZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1 --logfile b1/build.log andi_0.14-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libgirepository-2.0-0 arm64 2.82.2-2 [129 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 girepository-tools arm64 2.82.2-2 [134 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 uuid-dev arm64 2.40.2-11 [47.8 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libblkid-dev arm64 2.40.2-11 [208 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libmount-dev arm64 2.40.2-11 [28.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsysprof-capture-4-dev arm64 47.0-2 [48.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev arm64 2.82.2-2 [1690 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev-bin arm64 2.82.2-2 [161 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-data all 2.82.2-2 [1274 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libglib2.0-bin arm64 2.82.2-2 [122 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev-bin arm64 2.82.2-2 [51.1 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev arm64 2.82.2-2 [51.8 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Fetched 36.4 MB in 0s (168 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. 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Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21469 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j12 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_arm64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_arm64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2779257 and its subdirectories I: Current time: Fri Nov 22 06:49:24 -12 2024 I: pbuilder-time-stamp: 1732301364 Fri Nov 22 18:49:24 UTC 2024 I: Signing ./b1/andi_0.14-3_arm64.buildinfo as andi_0.14-3_arm64.buildinfo.asc Fri Nov 22 18:49:24 UTC 2024 I: Signed ./b1/andi_0.14-3_arm64.buildinfo as ./b1/andi_0.14-3_arm64.buildinfo.asc Fri Nov 22 18:49:24 UTC 2024 - build #1 for andi/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Nov 22 18:49:24 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-IYTv9B4S, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv: total 16 -rw-r--r-- 1 jenkins jenkins 2134 Dec 30 2023 andi_0.14-3.dsc drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:48 b2 -rw------- 1 jenkins jenkins 3214 Nov 22 18:48 rbuildlog.Bpfc0Wd /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1: total 616 -rw-r--r-- 1 jenkins jenkins 52292 Nov 22 18:49 andi-dbgsym_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 11748 Nov 22 18:49 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Nov 22 18:49 andi_0.14-3.dsc -rw-r--r-- 1 jenkins jenkins 6583 Nov 22 18:49 andi_0.14-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7465 Nov 22 18:49 andi_0.14-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 18:49 andi_0.14-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 470252 Nov 22 18:49 andi_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1374 Nov 22 18:49 andi_0.14-3_source.changes -rw-r--r-- 1 jenkins jenkins 65377 Nov 22 18:49 build.log /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2: total 0 Fri Nov 22 18:49:25 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Nov 22 06:48:17 -12 2024 I: pbuilder-time-stamp: 1732301297 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 30 11:08:07 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8a829739d13d44ef9fdcc3d182a66ed8' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='2779257' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_U3gZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1 --logfile b1/build.log andi_0.14-3.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libgirepository-2.0-0 arm64 2.82.2-2 [129 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 girepository-tools arm64 2.82.2-2 [134 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 uuid-dev arm64 2.40.2-11 [47.8 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libblkid-dev arm64 2.40.2-11 [208 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libmount-dev arm64 2.40.2-11 [28.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsysprof-capture-4-dev arm64 47.0-2 [48.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev arm64 2.82.2-2 [1690 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev-bin arm64 2.82.2-2 [161 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-data all 2.82.2-2 [1274 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libglib2.0-bin arm64 2.82.2-2 [122 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev-bin arm64 2.82.2-2 [51.1 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev arm64 2.82.2-2 [51.8 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Fetched 36.4 MB in 0s (168 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20407 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... Unpacking python3-minimal (3.12.6-1) ... Selecting previously unselected package media-types. Preparing to unpack .../01-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package tzdata. Preparing to unpack .../03-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../04-libkrb5support0_1.21.3-3_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-3) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../05-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../06-libk5crypto3_1.21.3-3_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-3) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../07-libkeyutils1_1.6.3-4_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-4) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../08-libkrb5-3_1.21.3-3_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-3) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../09-libgssapi-krb5-2_1.21.3-3_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-3) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../10-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../11-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../17-libpython3-stdlib_3.12.6-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3-minimal (3.12.6-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21469 files and directories currently installed.) Preparing to unpack .../00-python3_3.12.6-1_arm64.deb ... Unpacking python3 (3.12.6-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... 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Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j12 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_arm64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_arm64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/2779257 and its subdirectories I: Current time: Fri Nov 22 06:49:24 -12 2024 I: pbuilder-time-stamp: 1732301364 Fri Nov 22 18:49:26 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Fri Nov 22 18:49:26 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Fri Nov 22 18:49:26 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Nov 22 18:49:26 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-U0LFkC' ==================================================================================== Fri Dec 26 01:12:27 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 andi trixie /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv 0.14-3" as arguments. Fri Dec 26 01:12:27 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-2ixhQiEp" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 26 01:12:27 UTC 2025 I: Downloading source for trixie/andi=0.14-3 Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian trixie/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian trixie/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (23.6 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'andi' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/andi.git Please use: git clone https://salsa.debian.org/med-team/andi.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 553 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main andi 0.14-3 (dsc) [2134 B] Get:2 http://deb.debian.org/debian trixie/main andi 0.14-3 (tar) [540 kB] Get:3 http://deb.debian.org/debian trixie/main andi 0.14-3 (diff) [11.7 kB] Fetched 553 kB in 0s (23.6 MB/s) Download complete and in download only mode ============================================================================= Re-Building andi in trixie on arm64 on codethink03-arm64 now. Date: Fri Dec 26 01:12:28 GMT 2025 Date UTC: Fri Dec 26 01:12:28 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_t5u3 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' andi = debian-installer -o andi = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' andi = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_t5u3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2 --logfile b2/build.log andi_0.14-3.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 26 15:12:28 +14 2025 I: pbuilder-time-stamp: 1766711548 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [andi_0.14-3.dsc] I: copying [./andi_0.14.orig.tar.gz] I: copying [./andi_0.14-3.debian.tar.xz] I: Extracting source gpgv: Signature made Sat Dec 30 11:08:07 2023 gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./andi_0.14-3.dsc: no acceptable signature found dpkg-source: info: extracting andi in andi-0.14 dpkg-source: info: unpacking andi_0.14.orig.tar.gz dpkg-source: info: unpacking andi_0.14-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 26 01:12 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=bf51779e71d64b23b2a8b24e29470f7d LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=3310312 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_t5u3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2 --logfile b2/build.log andi_0.14-3.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libdivsufsort-dev, pkgconf, libgsl-dev, libglib2.0-dev, debhelper dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libdivsufsort-dev; however: Package libdivsufsort-dev is not installed. pbuilder-satisfydepends-dummy depends on pkgconf; however: Package pkgconf is not installed. pbuilder-satisfydepends-dummy depends on libgsl-dev; however: Package libgsl-dev is not installed. pbuilder-satisfydepends-dummy depends on libglib2.0-dev; however: Package libglib2.0-dev is not installed. pbuilder-satisfydepends-dummy depends on debhelper; however: Package debhelper is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} girepository-tools{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libblkid-dev{a} libcom-err2{a} libdebhelper-perl{a} libdivsufsort-dev{a} libdivsufsort3{a} libelf1t64{a} libexpat1{a} libffi-dev{a} libfile-stripnondeterminism-perl{a} libgio-2.0-dev{a} libgio-2.0-dev-bin{a} libgirepository-2.0-0{a} libglib2.0-0t64{a} libglib2.0-bin{a} libglib2.0-data{a} libglib2.0-dev{a} libglib2.0-dev-bin{a} libgsl-dev{a} libgsl28{a} libgslcblas0{a} libgssapi-krb5-2{a} libicu72{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libmagic-mgc{a} libmagic1t64{a} libmount-dev{a} libnsl2{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpkgconf3{a} libpython3-stdlib{a} libpython3.12-minimal{a} libpython3.12-stdlib{a} libreadline8t64{a} libselinux1-dev{a} libsepol-dev{a} libsysprof-capture-4-dev{a} libtirpc-common{a} libtirpc3t64{a} libtool{a} libuchardet0{a} libxml2{a} m4{a} man-db{a} media-types{a} native-architecture{a} netbase{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} python3{a} python3-minimal{a} python3-packaging{a} python3.12{a} python3.12-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} uuid-dev{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: ca-certificates curl krb5-locales libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx shared-mime-info wget xdg-user-dirs 0 packages upgraded, 82 newly installed, 0 to remove and 0 not upgraded. Need to get 36.4 MB of archives. After unpacking 159 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libpython3.12-minimal arm64 3.12.7-3 [808 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.12-minimal arm64 3.12.7-3 [1940 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.12.6-1 [26.7 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 10.1.0 [26.9 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.4 [12.8 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 12 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 libnsl2 arm64 1.3.0-3+b3 [37.9 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libpython3.12-stdlib arm64 3.12.7-3 [1902 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 python3.12 arm64 3.12.7-3 [671 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.12.6-1 [9692 B] Get: 22 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.12.6-1 [27.8 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 44 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 native-architecture all 0.2.3 [2108 B] Get: 53 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libgirepository-2.0-0 arm64 2.82.2-2 [129 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 girepository-tools arm64 2.82.2-2 [134 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 uuid-dev arm64 2.40.2-11 [47.8 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libblkid-dev arm64 2.40.2-11 [208 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libdivsufsort3 arm64 2.0.1-6+b1 [39.9 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libdivsufsort-dev arm64 2.0.1-6+b1 [19.1 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libffi-dev arm64 3.4.6-1 [57.0 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libsepol-dev arm64 3.7-1 [354 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libselinux1-dev arm64 3.7-3+b1 [164 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 libmount-dev arm64 2.40.2-11 [28.9 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libsysprof-capture-4-dev arm64 47.0-2 [48.9 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev arm64 2.82.2-2 [1690 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-packaging all 24.2-1 [55.3 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libgio-2.0-dev-bin arm64 2.82.2-2 [161 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libglib2.0-data all 2.82.2-2 [1274 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libglib2.0-bin arm64 2.82.2-2 [122 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev-bin arm64 2.82.2-2 [51.1 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libglib2.0-dev arm64 2.82.2-2 [51.8 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] Fetched 36.4 MB in 0s (142 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../libpython3.12-minimal_3.12.7-3_arm64.deb ... Unpacking libpython3.12-minimal:arm64 (3.12.7-3) ... Selecting previously unselected package libexpat1:arm64. Preparing to unpack .../libexpat1_2.6.4-1_arm64.deb ... Unpacking libexpat1:arm64 (2.6.4-1) ... Selecting previously unselected package python3.12-minimal. Preparing to unpack .../python3.12-minimal_3.12.7-3_arm64.deb ... Unpacking python3.12-minimal (3.12.7-3) ... Setting up libpython3.12-minimal:arm64 (3.12.7-3) ... Setting up libexpat1:arm64 (2.6.4-1) ... Setting up python3.12-minimal (3.12.7-3) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20407 files and directories currently installed.) Preparing to unpack .../00-python3-minimal_3.12.6-1_arm64.deb ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libnsl2:arm64. Preparing to unpack .../12-libnsl2_1.3.0-3+b3_arm64.deb ... Unpacking libnsl2:arm64 (1.3.0-3+b3) ... Selecting previously unselected package readline-common. Preparing to unpack .../13-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../14-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libpython3.12-stdlib:arm64. Preparing to unpack .../15-libpython3.12-stdlib_3.12.7-3_arm64.deb ... Unpacking libpython3.12-stdlib:arm64 (3.12.7-3) ... Selecting previously unselected package python3.12. Preparing to unpack .../16-python3.12_3.12.7-3_arm64.deb ... Unpacking python3.12 (3.12.7-3) ... 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Preparing to unpack .../60-libgsl-dev_2.8+dfsg-5_arm64.deb ... Unpacking libgsl-dev (2.8+dfsg-5) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-4) ... Setting up native-architecture (0.2.3) ... Setting up libicu72:arm64 (72.1-5+b1) ... Setting up bsdextrautils (2.40.2-11) ... Setting up libgslcblas0:arm64 (2.8+dfsg-5) ... Setting up libmagic-mgc (1:5.45-3+b1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libtirpc-common (1.3.4+ds-1.3) ... Setting up libdebhelper-perl (13.20) ... Setting up libmagic1t64:arm64 (1:5.45-3+b1) ... Setting up gettext-base (0.22.5-2) ... Setting up m4 (1.4.19-4) ... Setting up libcom-err2:arm64 (1.47.1-1+b1) ... Setting up file (1:5.45-3+b1) ... Setting up libffi-dev:arm64 (3.4.6-1) ... Setting up libpcre2-16-0:arm64 (10.42-4+b2) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-3) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 26 01:12:48 UTC 2025. Universal Time is now: Fri Dec 26 01:12:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:arm64 (47.0-2) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-4+b2) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libglib2.0-data (2.82.2-2) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up uuid-dev:arm64 (2.40.2-11) ... Setting up autopoint (0.22.5-2) ... Setting up libsepol-dev:arm64 (3.7-1) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up autoconf (2.72-3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libpcre2-posix3:arm64 (10.42-4+b2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.4) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libgsl28:arm64 (2.8+dfsg-5) ... Setting up libdivsufsort3:arm64 (2.0.1-6+b1) ... Setting up readline-common (8.2-5) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up libdivsufsort-dev:arm64 (2.0.1-6+b1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libblkid-dev:arm64 (2.40.2-11) ... Setting up gettext (0.22.5-2) ... Setting up libgsl-dev (2.8+dfsg-5) ... Setting up libpcre2-dev:arm64 (10.42-4+b2) ... Setting up libtool (2.4.7-8) ... Setting up libgirepository-2.0-0:arm64 (2.82.2-2) ... Setting up libselinux1-dev:arm64 (3.7-3+b1) ... Setting up libglib2.0-bin (2.82.2-2) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up groff-base (1.23.0-5) ... Setting up libmount-dev:arm64 (2.40.2-11) ... Setting up libgio-2.0-dev:arm64 (2.82.2-2) ... Setting up girepository-tools:arm64 (2.82.2-2) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libnsl2:arm64 (1.3.0-3+b3) ... Setting up libpython3.12-stdlib:arm64 (3.12.7-3) ... Setting up python3.12 (3.12.7-3) ... Setting up debhelper (13.20) ... Setting up libpython3-stdlib:arm64 (3.12.6-1) ... Setting up python3 (3.12.6-1) ... Setting up python3-packaging (24.2-1) ... Setting up libgio-2.0-dev-bin (2.82.2-2) ... Setting up libglib2.0-dev-bin (2.82.2-2) ... Setting up libglib2.0-dev:arm64 (2.82.2-2) ... Processing triggers for libc-bin (2.40-3) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:11: installing './ar-lib' configure.ac:6: installing './compile' configure.ac:2: installing './install-sh' configure.ac:2: installing './missing' parallel-tests: installing './test-driver' libs/Makefile.am: installing './depcomp' test/Makefile.am:14: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled automake: warning: possible forward-incompatibility. automake: At least one source file is in a subdirectory, but the 'subdir-objects' automake: automake option hasn't been enabled. For now, the corresponding output automake: object file(s) will be placed in the top-level directory. However, this automake: behavior may change in a future Automake major version, with object automake: files being placed in the same subdirectory as the corresponding sources. automake: You are advised to start using 'subdir-objects' option throughout your automake: project, to avoid future incompatibilities. test/Makefile.am:14: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:14: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/esa.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/io.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/model.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/process.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:9: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:9: but option 'subdir-objects' is disabled test/Makefile.am:4: warning: source file '$(top_srcdir)/src/sequence.c' is in a subdirectory, test/Makefile.am:4: but option 'subdir-objects' is disabled debian/rules override_dh_auto_configure make[1]: Entering directory '/build/reproducible-path/andi-0.14' dh_auto_configure -- --enable-unit-tests --with-seed=123 ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --enable-unit-tests --with-seed=123 checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for gcc... gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of gcc... none checking for g++... g++ checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking dependency style of g++... none checking whether make sets $(MAKE)... (cached) yes checking how to run the C preprocessor... gcc -E checking for ranlib... ranlib checking for ar... ar checking the archiver (ar) interface... ar checking for g++ option to support OpenMP... -fopenmp checking for gcc option to support OpenMP... -fopenmp checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_ran_binomial in -lgsl... yes checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for divsufsort.h... yes checking for divsufsort in -ldivsufsort... yes checking for pkg-config... /usr/bin/pkg-config checking pkg-config is at least version 0.9.0... yes checking for glib-2.0... yes checking whether g++ supports C++11 features by default... yes checking for limits.h... yes checking for stdlib.h... (cached) yes checking for string.h... (cached) yes checking for unistd.h... (cached) yes checking for stdint.h... (cached) yes checking for inttypes.h... (cached) yes checking for err.h... yes checking for errno.h... yes checking for fcntl.h... yes checking for inline... inline checking for size_t... yes checking for ssize_t... yes checking for int32_t... yes checking for uint8_t... yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for floor... yes checking for pow... yes checking for sqrt... yes checking for strdup... yes checking for strerror... yes checking for strndup... yes checking for strcasecmp... yes checking for strchr... yes checking for strrchr... yes checking for strchrnul... yes checking for strtoul... yes checking for strtod... yes checking for reallocarray... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating docs/andi.1 config.status: creating docs/Makefile config.status: creating libs/Makefile config.status: creating opt/Makefile config.status: creating src/Makefile config.status: creating test/Makefile config.status: creating src/config.h config.status: executing depfiles commands make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making all in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' echo "Missing Git" > ChangeLog; if test -d ./.git; then \ which git && git log --stat --date=short --abbrev-commit | grep --invert-match '^ [[:alnum:].]' | git stripspace > ChangeLog; \ fi make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making all in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' gcc -DHAVE_CONFIG_H -I. -I../src -I../opt -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o libpfasta_a-pfasta.o `test -f 'pfasta.c' || echo './'`pfasta.c rm -f libpfasta.a ar cru libpfasta.a libpfasta_a-pfasta.o ar: `u' modifier ignored since `D' is the default (see `U') ranlib libpfasta.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making all in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' rm -f libcompat.a ar cru libcompat.a ar: `u' modifier ignored since `D' is the default (see `U') ranlib libcompat.a make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making all in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make all-am make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-andi.o `test -f 'andi.c' || echo './'`andi.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-esa.o `test -f 'esa.c' || echo './'`esa.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-process.o `test -f 'process.c' || echo './'`process.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-sequence.o `test -f 'sequence.c' || echo './'`sequence.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-io.o `test -f 'io.c' || echo './'`io.c gcc -DHAVE_CONFIG_H -I. -fopenmp -I../libs -I../opt -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o andi-model.o `test -f 'model.c' || echo './'`model.c process.c: In function 'anchor': process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ gcc -fopenmp -Wall -Wextra -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o andi andi-andi.o andi-esa.o andi-process.o andi-sequence.o andi-io.o andi-model.o ../libs/libpfasta.a ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making all in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'all'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making all in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-test_esa.o `test -f 'test_esa.c' || echo './'`test_esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../libs -I../opt -I../src -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_esa-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-test_seq.o `test -f 'test_seq.c' || echo './'`test_seq.c gcc -DHAVE_CONFIG_H -I. -I../src -I../src -I../opt -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_seq-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c g++ -DHAVE_CONFIG_H -I. -I../src -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_fasta.o test_fasta.cxx gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-test_process.o `test -f 'test_process.c' || echo './'`test_process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-esa.o `test -f '../src/esa.c' || echo './'`../src/esa.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-io.o `test -f '../src/io.c' || echo './'`../src/io.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c ../src/sequence.c: In function 'normalize': ../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] 279 | #pragma omp atomic ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'setup2': test_esa.c:71:45: warning: unused parameter 'test_data' [-Wunused-parameter] 71 | void setup2( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'teardown': test_esa.c:97:47: warning: unused parameter 'test_data' [-Wunused-parameter] 97 | void teardown( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'basic': test_esa.c:107:44: warning: unused parameter 'test_data' [-Wunused-parameter] 107 | void basic( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'normq_cached': test_esa.c:134:51: warning: unused parameter 'test_data' [-Wunused-parameter] 134 | void normq_cached( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ test_esa.c: In function 'prefix': test_esa.c:176:45: warning: unused parameter 'test_data' [-Wunused-parameter] 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_auto_test make -j12 check "TESTSUITEFLAGS=-j12 --verbose" VERBOSE=1 make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making check in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make check-TESTS make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[4]: Entering directory '/build/reproducible-path/andi-0.14' PASS: test/test_seq PASS: test/test_process PASS: test/nan.sh PASS: test/low_homo.sh PASS: test/test_join.sh PASS: test/test_extra.sh PASS: test/test_esa PASS: test/test_random.sh ============================================================================ Testsuite summary for andi 0.14 ============================================================================ # TOTAL: 8 # PASS: 8 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[4]: Leaving directory '/build/reproducible-path/andi-0.14' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making check in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making check in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making check in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making check in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[2]: Nothing to be done for 'check'. make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making check in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make test_esa test_seq test_fasta test_process make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: 'test_esa' is up to date. make[3]: 'test_seq' is up to date. make[3]: 'test_fasta' is up to date. make[3]: 'test_process' is up to date. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/andi/ make -j12 install DESTDIR=/build/reproducible-path/andi-0.14/debian/andi AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/andi-0.14' Making install in . make[2]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Entering directory '/build/reproducible-path/andi-0.14' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' /usr/bin/install -c -m 644 andi-manual.pdf '/build/reproducible-path/andi-0.14/debian/andi/usr/share/doc/andi' make[3]: Leaving directory '/build/reproducible-path/andi-0.14' make[2]: Leaving directory '/build/reproducible-path/andi-0.14' Making install in libs make[2]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/libs' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/libs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/libs' Making install in opt make[2]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Entering directory '/build/reproducible-path/andi-0.14/opt' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/opt' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/opt' Making install in src make[2]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Entering directory '/build/reproducible-path/andi-0.14/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' /usr/bin/install -c andi '/build/reproducible-path/andi-0.14/debian/andi/usr/bin' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/src' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/src' Making install in docs make[2]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Entering directory '/build/reproducible-path/andi-0.14/docs' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' /usr/bin/install -c -m 644 andi.1 '/build/reproducible-path/andi-0.14/debian/andi/usr/share/man/man1' make[3]: Leaving directory '/build/reproducible-path/andi-0.14/docs' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/docs' Making install in test make[2]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Entering directory '/build/reproducible-path/andi-0.14/test' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'andi' in '../andi_0.14-3_arm64.deb'. dpkg-deb: building package 'andi-dbgsym' in '../andi-dbgsym_0.14-3_arm64.deb'. dpkg-genbuildinfo --build=binary -O../andi_0.14-3_arm64.buildinfo dpkg-genchanges --build=binary -O../andi_0.14-3_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/3310312 and its subdirectories I: Current time: Fri Dec 26 15:13:37 +14 2025 I: pbuilder-time-stamp: 1766711617 + false + set +x Fri Dec 26 01:13:37 UTC 2025 I: Signing ./b2/andi_0.14-3_arm64.buildinfo as andi_0.14-3_arm64.buildinfo.asc Fri Dec 26 01:13:38 UTC 2025 I: Signed ./b2/andi_0.14-3_arm64.buildinfo as ./b2/andi_0.14-3_arm64.buildinfo.asc Fri Dec 26 01:13:38 UTC 2025 - build #2 for andi/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 26 01:13:38 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-2ixhQiEp, removing. /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv: total 84 -rw-r--r-- 1 jenkins jenkins 2134 Dec 30 2023 andi_0.14-3.dsc drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:49 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 22 18:50 b2 -rw------- 1 jenkins jenkins 68892 Nov 22 18:49 rbuildlog.Bpfc0Wd /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1: total 628 -rw-r--r-- 1 jenkins jenkins 52292 Nov 22 18:49 andi-dbgsym_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 11748 Nov 22 18:49 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Nov 22 18:49 andi_0.14-3.dsc -rw-r--r-- 1 jenkins jenkins 6583 Nov 22 18:49 andi_0.14-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7465 Nov 22 18:49 andi_0.14-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 18:49 andi_0.14-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 470252 Nov 22 18:49 andi_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1374 Nov 22 18:49 andi_0.14-3_source.changes -rw-r--r-- 1 jenkins jenkins 65377 Nov 22 18:49 build.log /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2: total 620 -rw-r--r-- 1 jenkins jenkins 52292 Nov 22 18:50 andi-dbgsym_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 11748 Nov 22 18:50 andi_0.14-3.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2134 Nov 22 18:50 andi_0.14-3.dsc -rw-r--r-- 1 jenkins jenkins 6583 Nov 22 18:50 andi_0.14-3_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7465 Nov 22 18:50 andi_0.14-3_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1503 Nov 22 18:50 andi_0.14-3_arm64.changes -rw-r--r-- 1 jenkins jenkins 470252 Nov 22 18:50 andi_0.14-3_arm64.deb -rw-r--r-- 1 jenkins jenkins 1374 Nov 22 18:50 andi_0.14-3_source.changes -rw-r--r-- 1 jenkins jenkins 67320 Nov 22 18:50 build.log Fri Nov 22 18:50:39 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Fri Nov 22 18:50:39 UTC 2024 I: andi_0.14-3_arm64.changes: Format: 1.8 Date: Sat, 30 Dec 2023 12:02:01 +0100 Source: andi Binary: andi andi-dbgsym Architecture: arm64 Version: 0.14-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: andi - Efficient Estimation of Evolutionary Distances Closes: 1043772 Changes: andi (0.14-3) unstable; urgency=medium . * Team upload. * d/clean: new: cleanup leftover ChangeLog file. (Closes: #1043772) * remove-signedcompare-warning.patch: dep3 header. Also the patch has been forwarded upstream. * d/control: declare compliance to standards version 4.6.2. Checksums-Sha1: 59d2e15c7ce4390178490eba0f0d80cc3f187452 52292 andi-dbgsym_0.14-3_arm64.deb d6011c02bb3cf1dc9999f4b884496685e663c16f 6583 andi_0.14-3_arm64.buildinfo 14fe310396a671a0125e9e81a29648499d690531 470252 andi_0.14-3_arm64.deb Checksums-Sha256: 5b0ead880cca40fb41d20bd24575641ef40ba79ed9f48aed200b9dc7a9745f06 52292 andi-dbgsym_0.14-3_arm64.deb f6896d744ce6a530bffede8e45db1f335b25797cacb5e2a37efd0a3f06cf379d 6583 andi_0.14-3_arm64.buildinfo 8c6f361eb2fc58edf7eafc0a6c4eb20d9d7978cff0fe91a6c46361070e792019 470252 andi_0.14-3_arm64.deb Files: cdec64fea2b7c36c86b9786a373d501b 52292 debug optional andi-dbgsym_0.14-3_arm64.deb 616d76e3558cb116ad5b612630fc7e5a 6583 science optional andi_0.14-3_arm64.buildinfo 80618c3abc441337580feeae72681be6 470252 science optional andi_0.14-3_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/andi_0.14-3.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/andi_0.14-3.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/andi_0.14-3.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/andi_0.14-3.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/andi_0.14-3_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/andi_0.14-3.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-22 18:49:25.407987999 +0000 +++ b2/build.log 2024-11-22 18:50:39.080648764 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Nov 22 06:48:17 -12 2024 -I: pbuilder-time-stamp: 1732301297 +I: Current time: Fri Dec 26 15:12:28 +14 2025 +I: pbuilder-time-stamp: 1766711548 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -28,52 +28,84 @@ dpkg-source: info: applying remove-signedcompare-warning.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 26 01:12 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8a829739d13d44ef9fdcc3d182a66ed8' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='2779257' - PS1='# ' - PS2='> ' + INVOCATION_ID=bf51779e71d64b23b2a8b24e29470f7d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=3310312 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_U3gZ --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1 --logfile b1/build.log andi_0.14-3.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/pbuilderrc_t5u3 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2 --logfile b2/build.log andi_0.14-3.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-27-cloud-arm64 #1 SMP Debian 6.1.115-1 (2024-11-01) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/2779257/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -201,7 +233,7 @@ Get: 80 http://deb.debian.org/debian trixie/main arm64 libgslcblas0 arm64 2.8+dfsg-5 [84.1 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 libgsl28 arm64 2.8+dfsg-5 [881 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 libgsl-dev arm64 2.8+dfsg-5 [1118 kB] -Fetched 36.4 MB in 0s (168 MB/s) +Fetched 36.4 MB in 0s (142 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package libpython3.12-minimal:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -485,8 +517,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Fri Nov 22 18:48:37 UTC 2024. -Universal Time is now: Fri Nov 22 18:48:37 UTC 2024. +Local time is now: Fri Dec 26 01:12:48 UTC 2025. +Universal Time is now: Fri Dec 26 01:12:48 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up libsysprof-capture-4-dev:arm64 (47.0-2) ... @@ -559,7 +591,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/andi-0.14/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../andi_0.14-3_source.changes dpkg-buildpackage: info: source package andi dpkg-buildpackage: info: source version 0.14-3 dpkg-buildpackage: info: source distribution unstable @@ -757,13 +793,13 @@ gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-model.o `test -f '../src/model.c' || echo './'`../src/model.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-process.o `test -f '../src/process.c' || echo './'`../src/process.c gcc -DHAVE_CONFIG_H -I. -I../src -fopenmp -I../src -I../opt -I../libs -DDEBUG -std=gnu99 -Wdate-time -D_FORTIFY_SOURCE=2 -fms-extensions -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o test_process-sequence.o `test -f '../src/sequence.c' || echo './'`../src/sequence.c +../src/sequence.c: In function 'normalize': +../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] + 279 | #pragma omp atomic ../src/process.c: In function 'anchor': ../src/process.c:114:72: warning: unused parameter 'last_match' [-Wunused-parameter] 114 | const struct anchor *last_match, | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ -../src/sequence.c: In function 'normalize': -../src/sequence.c:279: warning: ignoring '#pragma omp atomic' [-Wunknown-pragmas] - 279 | #pragma omp atomic test_esa.c: In function 'setup': test_esa.c:46:44: warning: unused parameter 'test_data' [-Wunused-parameter] 46 | void setup( esa_fixture *ef, gconstpointer test_data){ @@ -789,8 +825,8 @@ 176 | void prefix( esa_fixture *ef, gconstpointer test_data){ | ~~~~~~~~~~~~~~^~~~~~~~~ gcc -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_seq test_seq-test_seq.o test_seq-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm -gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_esa test_esa-test_esa.o test_esa-esa.o test_esa-sequence.o -lglib-2.0 ../opt/libcompat.a -ldivsufsort -lgsl -lgslcblas -lm +gcc -fopenmp -Wall -Wextra -I/usr/include/glib-2.0 -I/usr/lib/aarch64-linux-gnu/glib-2.0/include -I/usr/include/sysprof-6 -pthread -Wno-missing-field-initializers -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_process test_process-test_process.o test_process-esa.o test_process-io.o test_process-model.o test_process-process.o test_process-sequence.o -lglib-2.0 ../opt/libcompat.a ../libs/libpfasta.a -ldivsufsort -lgsl -lgslcblas -lm g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/andi-0.14=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o test_fasta test_fasta.o -ldivsufsort -lgsl -lgslcblas -lm make[2]: Leaving directory '/build/reproducible-path/andi-0.14/test' make[1]: Leaving directory '/build/reproducible-path/andi-0.14' @@ -931,12 +967,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/3310312/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/2779257 and its subdirectories -I: Current time: Fri Nov 22 06:49:24 -12 2024 -I: pbuilder-time-stamp: 1732301364 +I: removing directory /srv/workspace/pbuilder/3310312 and its subdirectories +I: Current time: Fri Dec 26 15:13:37 +14 2025 +I: pbuilder-time-stamp: 1766711617 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/andi_0.14-3.diff: 73.1% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/andi_0.14-3.diff.gz b2/build.log: 82.6% -- replaced with stdout Compressing the 1st log... b1/build.log: 83.1% -- replaced with stdout Fri Nov 22 18:50:40 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_andi_trixie_arm64_1732301440 + touch /var/log/reproducible-builds/diffoscope_stamp_andi_trixie_arm64_1732301440 + RESULT=0 + systemd-run '--description=diffoscope on andi/0.14-3 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_24-62492 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv --run-session -c jenkins-reproducible-trixie-diffoscope-c628b5bc-4dc9-42d0-baee-6a5e987b0a6a -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/dbd-tmp-EL0mdST ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1/andi_0.14-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2/andi_0.14-3_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_24-62492.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/andi_0.14-3.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b1/andi_0.14-3_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.RAK0jCsv/b2/andi_0.14-3_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.344s) 0.344s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.020s) 0.020s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 649ms CPU time consumed: 646ms _ _ __ _ _ __ __| (_) / _` | '_ \ / _` | | | (_| | | | | (_| | | \__,_|_| |_|\__,_|_| Fri Nov 22 18:50:41 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Fri Nov 22 18:50:41 UTC 2024 I: andi from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-22 18:50:42] INFO: Starting at 2024-11-22 18:50:42.489849 [2024-11-22 18:50:42] INFO: Generating the pages of 1 package(s) [2024-11-22 18:50:42] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/andi didn't produce a buildlog, even though it has been built. [2024-11-22 18:50:42] INFO: Finished at 2024-11-22 18:50:42.962370, took: 0:00:00.472529 Fri Nov 22 18:50:43 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/andi.html Fri Nov 22 18:50:43 UTC 2024 I: Submitting .buildinfo files to external archives: Fri Nov 22 18:50:43 UTC 2024 I: Submitting 8.0K b1/andi_0.14-3_arm64.buildinfo.asc https://buildinfo.debian.net/d6011c02bb3cf1dc9999f4b884496685e663c16f/andi_0.14-3_arm64 Fri Nov 22 18:50:44 UTC 2024 I: Submitting 8.0K b2/andi_0.14-3_arm64.buildinfo.asc https://buildinfo.debian.net/134a8cf38e823baa822afccff06ffdf82c023d32/andi_0.14-3_arm64 Fri Nov 22 18:50:45 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Fri Nov 22 18:50:45 UTC 2024 I: Done submitting .buildinfo files. Fri Nov 22 18:50:45 UTC 2024 I: Removing signed andi_0.14-3_arm64.buildinfo.asc files: removed './b1/andi_0.14-3_arm64.buildinfo.asc' removed './b2/andi_0.14-3_arm64.buildinfo.asc' 1732301445 arm64 trixie andi Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/andi_0.14-3.rbuild.log: 80.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/andi_0.14-3.rbuild.log.gz [2024-11-22 18:50:45] INFO: Starting at 2024-11-22 18:50:45.878278 [2024-11-22 18:50:45] INFO: Generating the pages of 1 package(s) [2024-11-22 18:50:46] INFO: Finished at 2024-11-22 18:50:46.317825, took: 0:00:00.439554 All cleanup done. Fri Nov 22 18:50:46 UTC 2024 - total duration: 0h 2m 35s. Fri Nov 22 18:50:46 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-4uUCuAdy, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 39.902s CPU time consumed: 7.264s