Running as unit: rb-build-arm64_24-63366.service ==================================================================================== Tue Nov 26 12:41:18 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_24) on jenkins, called using "codethink04-arm64 codethink03-arm64" as arguments. Tue Nov 26 12:41:18 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-6BMHgBED" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Nov 26 12:41:18 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Nov 26 12:41:18 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-5Kw1dl' Tue Nov 26 12:41:19 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Nov 26 12:41:19 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-IJRzkk' ok, let's check if r-bioc-demixt is building anywhere yet… ok, r-bioc-demixt is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of r-bioc-demixt in trixie on arm64 on jenkins now. 1st build will be done on codethink04-arm64.debian.net. 2nd build will be done on codethink03-arm64.debian.net. ============================================================================= Tue Nov 26 12:41:30 UTC 2024 I: starting to build r-bioc-demixt/trixie/arm64 on jenkins on '2024-11-26 12:41' Tue Nov 26 12:41:30 UTC 2024 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_24/63366/console.log 1732624890 arm64 trixie r-bioc-demixt Tue Nov 26 12:41:30 UTC 2024 I: Downloading source for trixie/r-bioc-demixt=1.20.0+dfsg-1 --2024-11-26 12:41:30-- http://deb.debian.org/debian/pool/main/r/r-bioc-demixt/r-bioc-demixt_1.20.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2366 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-demixt_1.20.0+dfsg-1.dsc’ 0K .. 100% 277M=0s 2024-11-26 12:41:30 (277 MB/s) - ‘r-bioc-demixt_1.20.0+dfsg-1.dsc’ saved [2366/2366] --2024-11-26 12:41:30-- http://deb.debian.org/debian/pool/main/r/r-bioc-demixt/r-bioc-demixt_1.20.0%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2366 (2.3K) [text/prs.lines.tag] Saving to: ‘r-bioc-demixt_1.20.0+dfsg-1.dsc’ 0K .. 100% 277M=0s 2024-11-26 12:41:30 (277 MB/s) - ‘r-bioc-demixt_1.20.0+dfsg-1.dsc’ saved [2366/2366] Tue Nov 26 12:41:30 UTC 2024 I: r-bioc-demixt_1.20.0+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: r-bioc-demixt Binary: r-bioc-demixt Architecture: any Version: 1.20.0+dfsg-1 Maintainer: Debian R Packages Maintainers Uploaders: Steffen Moeller Homepage: https://bioconductor.org/packages/DeMixT/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/r-pkg-team/r-bioc-demixt Vcs-Git: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git Testsuite: autopkgtest-pkg-r Build-Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp, r-bioc-summarizedexperiment (>= 1.34.0), r-cran-knitr, r-cran-kernsmooth, r-cran-matrixcalc, r-cran-rmarkdown, r-bioc-dss (>= 2.52.0), r-cran-dendextend, r-cran-psych, r-bioc-sva (>= 3.52.0), r-cran-matrixstats, r-cran-truncdist, r-cran-base64enc, r-cran-ggplot2, architecture-is-64-bit Package-List: r-bioc-demixt deb gnu-r optional arch=any Checksums-Sha1: 8075bb006fa0bb3e96c4c7bd14197678ed9cbb9c 3475676 r-bioc-demixt_1.20.0+dfsg.orig.tar.xz a13e477262c73861f8aad238619aa0b1aee0a1ca 3436 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz Checksums-Sha256: 3d748d07835f4cb86e55de1d8f7c14a19e30e25d251275d0ef3eaee0c43743a0 3475676 r-bioc-demixt_1.20.0+dfsg.orig.tar.xz a5e0ef16d1f027721571fdf0f5115eab1d69d41dddd11db804b511ffba42e0c8 3436 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz Files: 535240a7d140a919837fc8ed9523c338 3475676 r-bioc-demixt_1.20.0+dfsg.orig.tar.xz 05fd8d1d5445b3478bb2f95e9aa01c20 3436 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmbB0lMACgkQPCZ2P2xn 5uL0kA/8CTVROVoOtRhyTinR/xVFHHG80KNAQo9t7OM7wPCAu0hYec1XpPw9M2f3 WPXIa3tqegDnMeG5t4DUjoqVk41T3lBMohjFgsEDqFwdVuDvmSNjz/oPPLdqbux+ fhUxoyBIUW1kgqv/fBJ5/Eu9xMN6Do1nHOosMsWjrvgywGfwhaxheE7bxuB6v2S7 zkaTKd6/Ao6fMcl3M6vguqMlxKQCMTWI5/fZXJ1o3sz9ZFwajJij5WqI8/Jb8lY/ LsD283JYAbmE9sLC9cAAQP80jHlIkmfhUJD1/wwShIsvoUaX2vofb2VVpLh6L6tk DK1/Mezwzi/9KncmzwjtQMl43hoDYv8oe+uaHieGM4tr/iQlVY/AMEmJtyBsg4dM 2Z7B/UAho/stoLHmW6M3b1Sl5nDDLEL/MfQPVTMYq6pwVPSCL7aZx1tdQs5ATHaB xR8DcQD5nSw3cDlsLy+1QjqTLgm6t8GW8uRD2rDGZByQwe3geuMMWg4e17sa6/y9 b6DTVsT25wmm9xgjuXE6ccacByx8FqMJl4dxw09O5KCo2IBgBtDYaPmfqplCsqeI mSCuehPS5W6l0+hpJ3B5TYfotd+fQvj9gOKW/usgV67Knsp399N9NPCetyYVi4Oh BZhfKx/71B/t9Y0LwabBAE613URXMfoSB9MQV/LS4JvMIf2OdOc= =0p5I -----END PGP SIGNATURE----- Tue Nov 26 12:41:30 UTC 2024 I: Checking whether the package is not for us Tue Nov 26 12:41:30 UTC 2024 I: Starting 1st build on remote node codethink04-arm64.debian.net. Tue Nov 26 12:41:30 UTC 2024 I: Preparing to do remote build '1' on codethink04-arm64.debian.net. Tue Nov 26 12:41:30 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Tue Nov 26 12:41:30 UTC 2024 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-f0iDjn' ==================================================================================== Tue Nov 26 12:41:31 UTC 2024 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "1 r-bioc-demixt trixie /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2 1.20.0+dfsg-1" as arguments. Tue Nov 26 12:41:31 UTC 2024 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-ruXtVToq" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Tue Nov 26 12:41:32 UTC 2024 I: Downloading source for trixie/r-bioc-demixt=1.20.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-demixt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3481 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (dsc) [2366 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (tar) [3476 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (diff) [3436 B] Fetched 3481 kB in 0s (20.3 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-demixt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3481 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (dsc) [2366 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (tar) [3476 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (diff) [3436 B] Fetched 3481 kB in 0s (20.3 MB/s) Download complete and in download only mode ============================================================================= Building r-bioc-demixt in trixie on arm64 on codethink04-arm64 now. Date: Tue Nov 26 12:41:32 GMT 2024 Date UTC: Tue Nov 26 12:41:32 UTC 2024 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 26 00:41:32 -12 2024 I: pbuilder-time-stamp: 1732624892 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-demixt_1.20.0+dfsg-1.dsc] I: copying [./r-bioc-demixt_1.20.0+dfsg.orig.tar.xz] I: copying [./r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:52:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-demixt_1.20.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-demixt in r-bioc-demixt-1.20.0+dfsg dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8280d7aa36c1440ca873e4e6fdf16969' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='832306' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_srky --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1 --logfile b1/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp, r-bioc-summarizedexperiment (>= 1.34.0), r-cran-knitr, r-cran-kernsmooth, r-cran-matrixcalc, r-cran-rmarkdown, r-bioc-dss (>= 2.52.0), r-cran-dendextend, r-cran-psych, r-bioc-sva (>= 3.52.0), r-cran-matrixstats, r-cran-truncdist, r-cran-base64enc, r-cran-ggplot2, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-kernsmooth; however: Package r-cran-kernsmooth is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixcalc; however: Package r-cran-matrixcalc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dss (>= 2.52.0); however: Package r-bioc-dss is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dendextend; however: Package r-cran-dendextend is not installed. pbuilder-satisfydepends-dummy depends on r-cran-psych; however: Package r-cran-psych is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva (>= 3.52.0); however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-truncdist; however: Package r-cran-truncdist is not installed. pbuilder-satisfydepends-dummy depends on r-cran-base64enc; however: Package r-cran-base64enc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} javascript-common{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libzstd-dev{a} littler{a} m4{a} man-db{a} nettle-dev{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-bsseq{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-dss{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dbi{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-evd{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-gtools{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixcalc{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-mnormt{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-promises{a} r-cran-psych{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-truncdist{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-bioc-graph r-cran-ape r-cran-bench r-cran-brio r-cran-cairo r-cran-callr r-cran-circlize r-cran-cluster r-cran-corrplot r-cran-covr r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-formattable r-cran-fpc r-cran-future r-cran-generics r-cran-gert r-cran-gh r-cran-gparotation r-cran-gplots r-cran-gridsvg r-cran-heatmaply r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-lavaan r-cran-lintr r-cran-lme4 r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-purrr r-cran-pvclust r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-rcsdp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-seriation r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 403 newly installed, 0 to remove and 0 not upgraded. Need to get 334 MB of archives. After unpacking 1114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 31 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 43 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 113 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 114 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3+b1 [106 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3+b1 [3709 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 139 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 193 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 200 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libsnappy1v5 arm64 1.2.1-1+b1 [28.7 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libblosc1 arm64 1.21.5+ds-1+b2 [39.2 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 205 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.11.0-1 [447 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 243 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.6-3+b2 [133 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1+b1 [103 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 pandoc arm64 3.1.11.1+ds-2 [26.2 MB] Get: 261 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 r-cran-bit arm64 4.0.5-1+b1 [1075 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 r-cran-bit64 arm64 4.0.5-1+b1 [475 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1+b1 [1708 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1+b1 [159 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 r-cran-rsqlite arm64 2.3.7-2+b1 [1133 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1+b1 [399 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 291 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 294 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 r-bioc-biostrings arm64 2.72.1+dfsg-1 [13.2 MB] Get: 297 http://deb.debian.org/debian trixie/main arm64 r-bioc-keggrest all 1.44.1+dfsg-1 [183 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotationdbi all 1.66.0-1 [4682 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 r-cran-xml arm64 3.99-0.17-1+b1 [1760 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotate all 1.82.0+dfsg-1 [1763 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1-1 [2057 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 r-bioc-beachmat arm64 2.20.0+ds-1 [1317 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 321 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocparallel arm64 1.38.0-2 [1321 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.56.1+dfsg-1 [1842 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 r-cran-bitops arm64 1.0-8-1 [30.7 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhtslib arm64 3.0.0+dfsg-1 [1311 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 r-bioc-rsamtools arm64 2.20.0+dfsg-1 [3565 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicalignments arm64 1.40.0-1 [2160 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [798 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 r-cran-rjson arm64 0.2.23-1 [99.0 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 r-cran-yaml arm64 2.3.10-1 [103 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 r-cran-restfulr arm64 0.0.15-1+b1 [389 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 r-bioc-rtracklayer arm64 1.64.0-1 [5051 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsgenome all 1.72.0-1 [6812 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 r-cran-gtools arm64 3.9.5-1+b1 [366 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 r-cran-data.table arm64 1.16.2+dfsg-1 [1958 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 r-cran-r.oo all 1.26.0-1 [961 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsematrixstats arm64 1.16.0+dfsg-1 [904 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedmatrixstats all 1.26.0+ds-1 [487 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 r-cran-permute all 0.9-7-1 [225 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5lib arm64 1.26.0+dfsg-1 [104 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5filters arm64 1.16.0+dfsg-1 [137 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5 arm64 2.48.0+dfsg-3 [852 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 r-bioc-hdf5array arm64 1.32.1-1 [8768 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsseq arm64 1.40.0+dfsg-1 [2956 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 r-bioc-dss arm64 2.52.0+dfsg-1 [607 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 r-bioc-edger arm64 4.2.2+dfsg-1 [1165 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 r-cran-survival arm64 3.7-0-1+b1 [6292 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 r-bioc-genefilter arm64 1.86.0-1 [1108 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 r-bioc-sva arm64 3.52.0-1 [455 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 r-cran-base64enc arm64 0.1-3-3+b1 [28.6 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 r-cran-htmltools arm64 0.5.8.1-1+b1 [378 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 r-cran-fs arm64 1.6.4+dfsg-1+b1 [245 kB] Get: 369 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 r-cran-sass arm64 0.4.9+dfsg-1+b1 [878 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 r-cran-commonmark arm64 1.9.1-1 [107 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1+b1 [1112 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 r-cran-viridis all 0.6.5-1 [2991 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 r-cran-dendextend all 1.18.1+dfsg-1 [1102 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 r-cran-evd arm64 2.3-7.1-1 [1663 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 r-cran-xfun arm64 0.49+dfsg-1 [546 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 r-cran-later arm64 1.3.2+dfsg-1+b1 [113 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 r-cran-promises arm64 1.3.0+dfsg-1+b1 [283 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 r-cran-httpuv arm64 1.6.15+dfsg-1+b1 [461 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 r-cran-kernsmooth arm64 2.23-24-1+b1 [92.7 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 396 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixcalc all 1.0.6-2 [200 kB] Get: 397 http://deb.debian.org/debian trixie/main arm64 r-cran-mnormt arm64 2.1.1-2+b1 [173 kB] Get: 398 http://deb.debian.org/debian trixie/main arm64 r-cran-psych all 2.4.1-1 [3397 kB] Get: 399 http://deb.debian.org/debian trixie/main arm64 r-cran-tinytex all 0.53-1 [146 kB] Get: 400 http://deb.debian.org/debian trixie/main arm64 r-cran-sourcetools arm64 0.1.7-1-1+b1 [45.0 kB] Get: 401 http://deb.debian.org/debian trixie/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 r-cran-truncdist all 1.0-2-4 [34.4 kB] Fetched 334 MB in 2s (158 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../015-architecture-properties_0.2.3_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../021-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../022-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../023-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../024-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../025-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../026-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../027-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../028-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../029-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../030-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../031-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../032-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... 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Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../091-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../092-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../093-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../094-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../095-libsharpyuv0_1.4.0-0.1+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../096-libwebp7_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../097-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../098-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../099-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../100-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../102-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... 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Selecting previously unselected package libpcre2-16-0:arm64. Preparing to unpack .../120-libpcre2-16-0_10.42-4+b2_arm64.deb ... Unpacking libpcre2-16-0:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../121-libpcre2-32-0_10.42-4+b2_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../122-libpcre2-posix3_10.42-4+b2_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../123-libpcre2-dev_10.42-4+b2_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.42-4+b2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../124-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:arm64. 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Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... 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Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-sourcetools (0.1.7-1-1+b1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1+b1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-xml (3.99-0.17-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-rjson (0.2.23-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4) ... 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Setting up r-cran-bitops (1.0-8-1) ... Setting up r-cran-bit64 (4.0.5-1+b1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2+b1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1+b1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up libcurl4-openssl-dev:arm64 (8.11.0-1) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1+b1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1+b1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-htmltools (0.5.8.1-1+b1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up r-cran-kernsmooth (2.23-24-1+b1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1+b1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1+b1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1+b1) ... Setting up r-bioc-sparsematrixstats (1.16.0+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1+b1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (4.2.2+dfsg-1) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2+b1) ... Setting up r-bioc-rhdf5lib (1.26.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-survival (3.7-0-1+b1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up r-cran-r.oo (1.26.0-1) ... Setting up r-bioc-rhdf5filters (1.16.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-psych (2.4.1-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1+b1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2+b1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.48.0+dfsg-3) ... Setting up r-cran-httpuv (1.6.15+dfsg-1+b1) ... Setting up r-cran-viridis (0.6.5-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-bioc-hdf5array (1.32.1-1) ... Setting up r-cran-dendextend (1.18.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.26.0+ds-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-bioc-beachmat (2.20.0+ds-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.66.0-1) ... Setting up r-bioc-annotate (1.82.0+dfsg-1) ... Setting up r-bioc-genefilter (1.86.0-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-bioc-sva (3.52.0-1) ... Setting up r-bioc-bsgenome (1.72.0-1) ... Setting up r-bioc-bsseq (1.40.0+dfsg-1) ... Setting up r-bioc-dss (2.52.0+dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-demixt_1.20.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-demixt dpkg-buildpackage: info: source version 1.20.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-demixt/ -O--buildsystem=R I: R Package: DeMixT Version: 1.20.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:51:40 +0200 mkdir -p /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:51:40 +0200'" * installing *source* package 'DeMixT' ... ** using staged installation ** libs using C compiler: 'gcc (Debian 14.2.0-8) 14.2.0' using C++ compiler: 'g++ (Debian 14.2.0-8) 14.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c DeMixT.c -o DeMixT.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c Profile_2D.cpp -o Profile_2D.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DeMixT.so DeMixT.o Profile_2D.o RcppExports.o init.o registerDynamicSymbol.o -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' installing to /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library/00LOCK-r-bioc-demixt-1.20.0+dfsg/00new/DeMixT/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** testing if installed package keeps a record of temporary installation path * DONE (DeMixT) W: Ignoring specified R dependency: R (>= 3.6.0) I: Using r-cran-rcpp for Depends:Rcpp (>= 1.0.0) I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment I: Using r-cran-knitr for Depends:knitr I: Using r-cran-kernsmooth for Depends:KernSmooth I: Using r-cran-matrixcalc for Depends:matrixcalc I: Using r-cran-rmarkdown for Depends:rmarkdown I: Using r-bioc-dss for Depends:DSS I: Using r-cran-dendextend for Depends:dendextend I: Using r-cran-psych for Depends:psych I: Using r-bioc-sva for Depends:sva I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-truncdist for Imports:truncdist I: Using r-cran-base64enc for Imports:base64enc I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-demixt as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_fixperms chmod -x debian/r-bioc-demixt/usr/lib/R/site-library/DeMixT/doc/*.Rmd make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-demixt' in '../r-bioc-demixt_1.20.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-demixt-dbgsym' in '../r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/832306 and its subdirectories I: Current time: Tue Nov 26 00:43:39 -12 2024 I: pbuilder-time-stamp: 1732625019 Tue Nov 26 12:43:39 UTC 2024 I: Signing ./b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo as r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc Tue Nov 26 12:43:39 UTC 2024 I: Signed ./b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo as ./b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc Tue Nov 26 12:43:39 UTC 2024 - build #1 for r-bioc-demixt/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Tue Nov 26 12:43:39 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-ruXtVToq, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Nov 26 12:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 26 12:41 b2 -rw-r--r-- 1 jenkins jenkins 2366 Aug 18 10:56 r-bioc-demixt_1.20.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 3546 Nov 26 12:41 rbuildlog.9ngTgOG /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1: total 3592 -rw-r--r-- 1 jenkins jenkins 156308 Nov 26 12:43 build.log -rw-r--r-- 1 jenkins jenkins 807892 Nov 26 12:43 r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3436 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2366 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 17472 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 18354 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1487 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2649956 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1309 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2: total 0 Tue Nov 26 12:43:42 UTC 2024 I: Deleting $TMPDIR on codethink04-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Nov 26 00:41:32 -12 2024 I: pbuilder-time-stamp: 1732624892 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-demixt_1.20.0+dfsg-1.dsc] I: copying [./r-bioc-demixt_1.20.0+dfsg.orig.tar.xz] I: copying [./r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:52:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-demixt_1.20.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-demixt in r-bioc-demixt-1.20.0+dfsg dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='8280d7aa36c1440ca873e4e6fdf16969' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='832306' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_srky --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1 --logfile b1/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp, r-bioc-summarizedexperiment (>= 1.34.0), r-cran-knitr, r-cran-kernsmooth, r-cran-matrixcalc, r-cran-rmarkdown, r-bioc-dss (>= 2.52.0), r-cran-dendextend, r-cran-psych, r-bioc-sva (>= 3.52.0), r-cran-matrixstats, r-cran-truncdist, r-cran-base64enc, r-cran-ggplot2, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-kernsmooth; however: Package r-cran-kernsmooth is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixcalc; however: Package r-cran-matrixcalc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dss (>= 2.52.0); however: Package r-bioc-dss is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dendextend; however: Package r-cran-dendextend is not installed. pbuilder-satisfydepends-dummy depends on r-cran-psych; however: Package r-cran-psych is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva (>= 3.52.0); however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-truncdist; however: Package r-cran-truncdist is not installed. pbuilder-satisfydepends-dummy depends on r-cran-base64enc; however: Package r-cran-base64enc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} javascript-common{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} 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libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libzstd-dev{a} littler{a} m4{a} man-db{a} nettle-dev{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-bsseq{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-dss{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dbi{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-evd{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-gtools{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixcalc{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-mnormt{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-promises{a} r-cran-psych{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-truncdist{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-bioc-graph r-cran-ape r-cran-bench r-cran-brio r-cran-cairo r-cran-callr r-cran-circlize r-cran-cluster r-cran-corrplot r-cran-covr r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-formattable r-cran-fpc r-cran-future r-cran-generics r-cran-gert r-cran-gh r-cran-gparotation r-cran-gplots r-cran-gridsvg r-cran-heatmaply r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-lavaan r-cran-lintr r-cran-lme4 r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-purrr r-cran-pvclust r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-rcsdp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-seriation r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 403 newly installed, 0 to remove and 0 not upgraded. Need to get 334 MB of archives. After unpacking 1114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 31 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 43 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 113 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 114 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3+b1 [106 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3+b1 [3709 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 139 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 193 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 200 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libsnappy1v5 arm64 1.2.1-1+b1 [28.7 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libblosc1 arm64 1.21.5+ds-1+b2 [39.2 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 205 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.11.0-1 [447 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 243 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.6-3+b2 [133 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1+b1 [103 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 pandoc arm64 3.1.11.1+ds-2 [26.2 MB] Get: 261 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 r-cran-bit arm64 4.0.5-1+b1 [1075 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 r-cran-bit64 arm64 4.0.5-1+b1 [475 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1+b1 [1708 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1+b1 [159 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 r-cran-rsqlite arm64 2.3.7-2+b1 [1133 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1+b1 [399 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 291 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 294 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 r-bioc-biostrings arm64 2.72.1+dfsg-1 [13.2 MB] Get: 297 http://deb.debian.org/debian trixie/main arm64 r-bioc-keggrest all 1.44.1+dfsg-1 [183 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotationdbi all 1.66.0-1 [4682 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 r-cran-xml arm64 3.99-0.17-1+b1 [1760 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotate all 1.82.0+dfsg-1 [1763 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1-1 [2057 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 r-bioc-beachmat arm64 2.20.0+ds-1 [1317 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 321 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocparallel arm64 1.38.0-2 [1321 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.56.1+dfsg-1 [1842 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 r-cran-bitops arm64 1.0-8-1 [30.7 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhtslib arm64 3.0.0+dfsg-1 [1311 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 r-bioc-rsamtools arm64 2.20.0+dfsg-1 [3565 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicalignments arm64 1.40.0-1 [2160 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [798 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 r-cran-rjson arm64 0.2.23-1 [99.0 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 r-cran-yaml arm64 2.3.10-1 [103 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 r-cran-restfulr arm64 0.0.15-1+b1 [389 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 r-bioc-rtracklayer arm64 1.64.0-1 [5051 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsgenome all 1.72.0-1 [6812 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 r-cran-gtools arm64 3.9.5-1+b1 [366 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 r-cran-data.table arm64 1.16.2+dfsg-1 [1958 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 r-cran-r.oo all 1.26.0-1 [961 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsematrixstats arm64 1.16.0+dfsg-1 [904 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedmatrixstats all 1.26.0+ds-1 [487 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 r-cran-permute all 0.9-7-1 [225 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5lib arm64 1.26.0+dfsg-1 [104 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5filters arm64 1.16.0+dfsg-1 [137 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5 arm64 2.48.0+dfsg-3 [852 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 r-bioc-hdf5array arm64 1.32.1-1 [8768 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsseq arm64 1.40.0+dfsg-1 [2956 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 r-bioc-dss arm64 2.52.0+dfsg-1 [607 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 r-bioc-edger arm64 4.2.2+dfsg-1 [1165 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 r-cran-survival arm64 3.7-0-1+b1 [6292 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 r-bioc-genefilter arm64 1.86.0-1 [1108 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 r-bioc-sva arm64 3.52.0-1 [455 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 r-cran-base64enc arm64 0.1-3-3+b1 [28.6 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 r-cran-htmltools arm64 0.5.8.1-1+b1 [378 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 r-cran-fs arm64 1.6.4+dfsg-1+b1 [245 kB] Get: 369 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 r-cran-sass arm64 0.4.9+dfsg-1+b1 [878 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 r-cran-commonmark arm64 1.9.1-1 [107 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1+b1 [1112 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 r-cran-viridis all 0.6.5-1 [2991 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 r-cran-dendextend all 1.18.1+dfsg-1 [1102 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 r-cran-evd arm64 2.3-7.1-1 [1663 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 r-cran-xfun arm64 0.49+dfsg-1 [546 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 r-cran-later arm64 1.3.2+dfsg-1+b1 [113 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 r-cran-promises arm64 1.3.0+dfsg-1+b1 [283 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 r-cran-httpuv arm64 1.6.15+dfsg-1+b1 [461 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 r-cran-kernsmooth arm64 2.23-24-1+b1 [92.7 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 396 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixcalc all 1.0.6-2 [200 kB] Get: 397 http://deb.debian.org/debian trixie/main arm64 r-cran-mnormt arm64 2.1.1-2+b1 [173 kB] Get: 398 http://deb.debian.org/debian trixie/main arm64 r-cran-psych all 2.4.1-1 [3397 kB] Get: 399 http://deb.debian.org/debian trixie/main arm64 r-cran-tinytex all 0.53-1 [146 kB] Get: 400 http://deb.debian.org/debian trixie/main arm64 r-cran-sourcetools arm64 0.1.7-1-1+b1 [45.0 kB] Get: 401 http://deb.debian.org/debian trixie/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 r-cran-truncdist all 1.0-2-4 [34.4 kB] Fetched 334 MB in 2s (158 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.3.2-2_arm64.deb ... Unpacking openssl (3.3.2-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3+b1) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../006-libmagic1t64_1%3a5.45-3+b1_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.45-3+b1) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.45-3+b1_arm64.deb ... Unpacking file (1:5.45-3+b1) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.22.5-2_arm64.deb ... Unpacking gettext-base (0.22.5-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../009-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.23.0-5_arm64.deb ... Unpacking groff-base (1.23.0-5) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.40.2-11_arm64.deb ... Unpacking bsdextrautils (2.40.2-11) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../012-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package architecture-properties:arm64. Preparing to unpack .../015-architecture-properties_0.2.3_arm64.deb ... Unpacking architecture-properties:arm64 (0.2.3) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-4_arm64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.22.5-2_all.deb ... Unpacking autopoint (0.22.5-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../021-libcom-err2_1.47.1-1+b1_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.1-1+b1) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../022-comerr-dev_2.1-1.47.1-1+b1_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Selecting previously unselected package dctrl-tools. Preparing to unpack .../023-dctrl-tools_2.24-3+b1_arm64.deb ... Unpacking dctrl-tools (2.24-3+b1) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../024-libdebhelper-perl_13.20_all.deb ... Unpacking libdebhelper-perl (13.20) ... Selecting previously unselected package libtool. Preparing to unpack .../025-libtool_2.4.7-8_all.deb ... Unpacking libtool (2.4.7-8) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../026-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../027-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../028-libfile-stripnondeterminism-perl_1.14.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../029-dh-strip-nondeterminism_1.14.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.14.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../030-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../031-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libicu72:arm64. Preparing to unpack .../032-libicu72_72.1-5+b1_arm64.deb ... Unpacking libicu72:arm64 (72.1-5+b1) ... 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Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../091-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../092-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../093-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../094-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../095-libsharpyuv0_1.4.0-0.1+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../096-libwebp7_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../097-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../098-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../099-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../100-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../102-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... 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Selecting previously unselected package libpcre2-16-0:arm64. Preparing to unpack .../120-libpcre2-16-0_10.42-4+b2_arm64.deb ... Unpacking libpcre2-16-0:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-32-0:arm64. Preparing to unpack .../121-libpcre2-32-0_10.42-4+b2_arm64.deb ... Unpacking libpcre2-32-0:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-posix3:arm64. Preparing to unpack .../122-libpcre2-posix3_10.42-4+b2_arm64.deb ... Unpacking libpcre2-posix3:arm64 (10.42-4+b2) ... Selecting previously unselected package libpcre2-dev:arm64. Preparing to unpack .../123-libpcre2-dev_10.42-4+b2_arm64.deb ... Unpacking libpcre2-dev:arm64 (10.42-4+b2) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../124-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package libpng-dev:arm64. 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Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... 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Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-sourcetools (0.1.7-1-1+b1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1+b1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-xml (3.99-0.17-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-rjson (0.2.23-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4) ... 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Setting up r-cran-bitops (1.0-8-1) ... Setting up r-cran-bit64 (4.0.5-1+b1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2+b1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1+b1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up libcurl4-openssl-dev:arm64 (8.11.0-1) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1+b1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1+b1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-htmltools (0.5.8.1-1+b1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up r-cran-kernsmooth (2.23-24-1+b1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1+b1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1+b1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1+b1) ... Setting up r-bioc-sparsematrixstats (1.16.0+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1+b1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (4.2.2+dfsg-1) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2+b1) ... Setting up r-bioc-rhdf5lib (1.26.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-survival (3.7-0-1+b1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up r-cran-r.oo (1.26.0-1) ... Setting up r-bioc-rhdf5filters (1.16.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-psych (2.4.1-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1+b1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2+b1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.48.0+dfsg-3) ... Setting up r-cran-httpuv (1.6.15+dfsg-1+b1) ... Setting up r-cran-viridis (0.6.5-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-bioc-hdf5array (1.32.1-1) ... Setting up r-cran-dendextend (1.18.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.26.0+ds-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-bioc-beachmat (2.20.0+ds-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.66.0-1) ... Setting up r-bioc-annotate (1.82.0+dfsg-1) ... Setting up r-bioc-genefilter (1.86.0-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-bioc-sva (3.52.0-1) ... Setting up r-bioc-bsgenome (1.72.0-1) ... Setting up r-bioc-bsseq (1.40.0+dfsg-1) ... Setting up r-bioc-dss (2.52.0+dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-demixt_1.20.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-demixt dpkg-buildpackage: info: source version 1.20.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-demixt/ -O--buildsystem=R I: R Package: DeMixT Version: 1.20.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:51:40 +0200 mkdir -p /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:51:40 +0200'" * installing *source* package 'DeMixT' ... ** using staged installation ** libs using C compiler: 'gcc (Debian 14.2.0-8) 14.2.0' using C++ compiler: 'g++ (Debian 14.2.0-8) 14.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c DeMixT.c -o DeMixT.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c Profile_2D.cpp -o Profile_2D.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DeMixT.so DeMixT.o Profile_2D.o RcppExports.o init.o registerDynamicSymbol.o -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' installing to /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library/00LOCK-r-bioc-demixt-1.20.0+dfsg/00new/DeMixT/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** testing if installed package keeps a record of temporary installation path * DONE (DeMixT) W: Ignoring specified R dependency: R (>= 3.6.0) I: Using r-cran-rcpp for Depends:Rcpp (>= 1.0.0) I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment I: Using r-cran-knitr for Depends:knitr I: Using r-cran-kernsmooth for Depends:KernSmooth I: Using r-cran-matrixcalc for Depends:matrixcalc I: Using r-cran-rmarkdown for Depends:rmarkdown I: Using r-bioc-dss for Depends:DSS I: Using r-cran-dendextend for Depends:dendextend I: Using r-cran-psych for Depends:psych I: Using r-bioc-sva for Depends:sva I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-truncdist for Imports:truncdist I: Using r-cran-base64enc for Imports:base64enc I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-demixt as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_fixperms chmod -x debian/r-bioc-demixt/usr/lib/R/site-library/DeMixT/doc/*.Rmd make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-demixt' in '../r-bioc-demixt_1.20.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-demixt-dbgsym' in '../r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/832306 and its subdirectories I: Current time: Tue Nov 26 00:43:39 -12 2024 I: pbuilder-time-stamp: 1732625019 Tue Nov 26 12:43:43 UTC 2024 I: 1st build successful. Starting 2nd build on remote node codethink03-arm64.debian.net. Tue Nov 26 12:43:43 UTC 2024 I: Preparing to do remote build '2' on codethink03-arm64.debian.net. Tue Nov 26 12:43:43 UTC 2024 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Tue Nov 26 12:43:43 UTC 2024 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-dthGRq' ==================================================================================== Mon Dec 29 19:06:44 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "2 r-bioc-demixt trixie /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2 1.20.0+dfsg-1" as arguments. Mon Dec 29 19:06:44 UTC 2025 - actually running "reproducible_build.sh" (md5sum 68e686e434c9ab7bc3ec047d8b309cbc) as "/tmp/jenkins-script-z24axrhH" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Mon Dec 29 19:06:44 UTC 2025 I: Downloading source for trixie/r-bioc-demixt=1.20.0+dfsg-1 Reading package lists... NOTICE: 'r-bioc-demixt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3481 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (dsc) [2366 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (tar) [3476 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (diff) [3436 B] Fetched 3481 kB in 0s (57.4 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'r-bioc-demixt' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git Please use: git clone https://salsa.debian.org/r-pkg-team/r-bioc-demixt.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 3481 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (dsc) [2366 B] Get:2 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (tar) [3476 kB] Get:3 http://deb.debian.org/debian trixie/main r-bioc-demixt 1.20.0+dfsg-1 (diff) [3436 B] Fetched 3481 kB in 0s (57.4 MB/s) Download complete and in download only mode ============================================================================= Re-Building r-bioc-demixt in trixie on arm64 on codethink03-arm64 now. Date: Mon Dec 29 19:06:44 GMT 2025 Date UTC: Mon Dec 29 19:06:44 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2 + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_h3oO + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' r-bioc-demixt = debian-installer -o r-bioc-demixt = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' r-bioc-demixt = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_h3oO --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2 --logfile b2/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Dec 30 09:06:45 +14 2025 I: pbuilder-time-stamp: 1767035205 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [r-bioc-demixt_1.20.0+dfsg-1.dsc] I: copying [./r-bioc-demixt_1.20.0+dfsg.orig.tar.xz] I: copying [./r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz] I: Extracting source gpgv: Signature made Sun Aug 18 10:52:03 2024 gpgv: using RSA key 724D609337113C710550D7473C26763F6C67E6E2 gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./r-bioc-demixt_1.20.0+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting r-bioc-demixt in r-bioc-demixt-1.20.0+dfsg dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg.orig.tar.xz dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D01_modify_environment starting debug: Running on codethink03-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Dec 29 19:06 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.32(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=6c224227bd9b46ec8b77fc176bb05002 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=835071 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_h3oO --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2 --logfile b2/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-r, r-base-dev, r-cran-rcpp, r-bioc-summarizedexperiment (>= 1.34.0), r-cran-knitr, r-cran-kernsmooth, r-cran-matrixcalc, r-cran-rmarkdown, r-bioc-dss (>= 2.52.0), r-cran-dendextend, r-cran-psych, r-bioc-sva (>= 3.52.0), r-cran-matrixstats, r-cran-truncdist, r-cran-base64enc, r-cran-ggplot2, architecture-is-64-bit dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-r; however: Package dh-r is not installed. pbuilder-satisfydepends-dummy depends on r-base-dev; however: Package r-base-dev is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rcpp; however: Package r-cran-rcpp is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-summarizedexperiment (>= 1.34.0); however: Package r-bioc-summarizedexperiment is not installed. pbuilder-satisfydepends-dummy depends on r-cran-knitr; however: Package r-cran-knitr is not installed. pbuilder-satisfydepends-dummy depends on r-cran-kernsmooth; however: Package r-cran-kernsmooth is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixcalc; however: Package r-cran-matrixcalc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-rmarkdown; however: Package r-cran-rmarkdown is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-dss (>= 2.52.0); however: Package r-bioc-dss is not installed. pbuilder-satisfydepends-dummy depends on r-cran-dendextend; however: Package r-cran-dendextend is not installed. pbuilder-satisfydepends-dummy depends on r-cran-psych; however: Package r-cran-psych is not installed. pbuilder-satisfydepends-dummy depends on r-bioc-sva (>= 3.52.0); however: Package r-bioc-sva is not installed. pbuilder-satisfydepends-dummy depends on r-cran-matrixstats; however: Package r-cran-matrixstats is not installed. pbuilder-satisfydepends-dummy depends on r-cran-truncdist; however: Package r-cran-truncdist is not installed. pbuilder-satisfydepends-dummy depends on r-cran-base64enc; however: Package r-cran-base64enc is not installed. pbuilder-satisfydepends-dummy depends on r-cran-ggplot2; however: Package r-cran-ggplot2 is not installed. pbuilder-satisfydepends-dummy depends on architecture-is-64-bit; however: Package architecture-is-64-bit is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: architecture-properties{a} autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} comerr-dev{a} dctrl-tools{a} debhelper{a} dh-autoreconf{a} dh-r{a} dh-strip-nondeterminism{a} dwz{a} file{a} fontconfig{a} fontconfig-config{a} fonts-dejavu-core{a} fonts-dejavu-mono{a} fonts-font-awesome{a} fonts-glyphicons-halflings{a} fonts-mathjax{a} gettext{a} gettext-base{a} gfortran{a} gfortran-14{a} gfortran-14-aarch64-linux-gnu{a} gfortran-aarch64-linux-gnu{a} groff-base{a} hdf5-helpers{a} icu-devtools{a} intltool-debian{a} javascript-common{a} krb5-multidev{a} libaec-dev{a} libaec0{a} libalgorithm-c3-perl{a} libarchive-zip-perl{a} libb-hooks-endofscope-perl{a} libb-hooks-op-check-perl{a} libblas-dev{a} libblas3{a} libblosc1{a} libboost-dev{a} libboost1.83-dev{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcairo2{a} libclass-c3-perl{a} libclass-load-perl{a} libclass-load-xs-perl{a} libclone-perl{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-openssl-dev{a} libcurl4t64{a} libdata-optlist-perl{a} libdatrie1{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libdevel-callchecker-perl{a} libdevel-globaldestruction-perl{a} libdevel-overloadinfo-perl{a} libdevel-stacktrace-perl{a} libdist-checkconflicts-perl{a} libdynaloader-functions-perl{a} libelf1t64{a} libencode-locale-perl{a} libeval-closure-perl{a} libevent-2.1-7t64{a} libexpat1{a} libfile-stripnondeterminism-perl{a} libfile-which-perl{a} libfontconfig1{a} libfreetype6{a} libfribidi0{a} libgfortran-14-dev{a} libgfortran5{a} libglib2.0-0t64{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgraphite2-3{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libharfbuzz0b{a} libhdf5-103-1t64{a} libhdf5-cpp-103-1t64{a} libhdf5-dev{a} libhdf5-fortran-102t64{a} libhdf5-hl-100t64{a} libhdf5-hl-cpp-100t64{a} libhdf5-hl-fortran-100t64{a} libhttp-date-perl{a} libhttp-message-perl{a} libice6{a} libicu-dev{a} libicu72{a} libidn2-dev{a} libio-html-perl{a} libjbig0{a} libjpeg-dev{a} libjpeg62-turbo{a} libjpeg62-turbo-dev{a} libjs-bootstrap{a} libjs-bootstrap4{a} libjs-d3{a} libjs-es5-shim{a} libjs-highlight.js{a} libjs-jquery{a} libjs-jquery-datatables{a} libjs-jquery-selectize.js{a} libjs-jquery-ui{a} libjs-json{a} libjs-mathjax{a} libjs-microplugin.js{a} libjs-modernizr{a} libjs-popper.js{a} libjs-prettify{a} libjs-sifter.js{a} libjs-twitter-bootstrap-datepicker{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} liblapack-dev{a} liblapack3{a} libldap-2.5-0{a} libldap-dev{a} liblerc4{a} liblua5.4-0{a} liblwp-mediatypes-perl{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libmodule-implementation-perl{a} libmodule-runtime-conflicts-perl{a} libmodule-runtime-perl{a} libmoose-perl{a} libmro-compat-perl{a} libnamespace-clean-perl{a} libncurses-dev{a} libncurses6{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-gnutls8{a} libnuma1{a} libp11-kit-dev{a} libpackage-deprecationmanager-perl{a} libpackage-stash-perl{a} libpackage-stash-xs-perl{a} libpango-1.0-0{a} libpangocairo-1.0-0{a} libpangoft2-1.0-0{a} libpaper-utils{a} libpaper1{a} libparams-classify-perl{a} libparams-util-perl{a} libpcre2-16-0{a} libpcre2-32-0{a} libpcre2-dev{a} libpcre2-posix3{a} libpipeline1{a} libpixman-1-0{a} libpkgconf3{a} libpng-dev{a} libpng16-16t64{a} libpsl-dev{a} libpsl5t64{a} libreadline-dev{a} libreadline8t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libsharpyuv0{a} libsm6{a} libsnappy1v5{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libsub-exporter-perl{a} libsub-exporter-progressive-perl{a} libsub-identify-perl{a} libsub-install-perl{a} libsub-name-perl{a} libswitch-perl{a} libsz2{a} libtasn1-6-dev{a} libtcl8.6{a} libthai-data{a} libthai0{a} libtiff6{a} libtimedate-perl{a} libtirpc-common{a} libtirpc-dev{a} libtirpc3t64{a} libtk8.6{a} libtool{a} libtry-tiny-perl{a} libuchardet0{a} libunbound8{a} liburi-perl{a} libuv1t64{a} libvariable-magic-perl{a} libwebp7{a} libwww-curl-perl{a} libwww-curl-simple-perl{a} libx11-6{a} libx11-data{a} libxau6{a} libxcb-render0{a} libxcb-shm0{a} libxcb1{a} libxdmcp6{a} libxext6{a} libxft2{a} libxml2{a} libxmuu1{a} libxrender1{a} libxss1{a} libxt6t64{a} libyaml-0-2{a} libzstd-dev{a} littler{a} m4{a} man-db{a} nettle-dev{a} node-bootstrap-sass{a} node-html5shiv{a} node-normalize.css{a} openssl{a} pandoc{a} pandoc-data{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} r-base-core{a} r-base-dev{a} r-bioc-annotate{a} r-bioc-annotationdbi{a} r-bioc-beachmat{a} r-bioc-biobase{a} r-bioc-biocgenerics{a} r-bioc-biocio{a} r-bioc-biocparallel{a} r-bioc-biostrings{a} r-bioc-bsgenome{a} r-bioc-bsseq{a} r-bioc-delayedarray{a} r-bioc-delayedmatrixstats{a} r-bioc-dss{a} r-bioc-edger{a} r-bioc-genefilter{a} r-bioc-genomeinfodb{a} r-bioc-genomeinfodbdata{a} r-bioc-genomicalignments{a} r-bioc-genomicranges{a} r-bioc-hdf5array{a} r-bioc-iranges{a} r-bioc-keggrest{a} r-bioc-limma{a} r-bioc-matrixgenerics{a} r-bioc-rhdf5{a} r-bioc-rhdf5filters{a} r-bioc-rhdf5lib{a} r-bioc-rhtslib{a} r-bioc-rsamtools{a} r-bioc-rtracklayer{a} r-bioc-s4arrays{a} r-bioc-s4vectors{a} r-bioc-sparsearray{a} r-bioc-sparsematrixstats{a} r-bioc-summarizedexperiment{a} r-bioc-sva{a} r-bioc-ucsc.utils{a} r-bioc-xvector{a} r-bioc-zlibbioc{a} r-cran-abind{a} r-cran-askpass{a} r-cran-base64enc{a} r-cran-bh{a} r-cran-bit{a} r-cran-bit64{a} r-cran-bitops{a} r-cran-blob{a} r-cran-bslib{a} r-cran-cachem{a} r-cran-cli{a} r-cran-codetools{a} r-cran-colorspace{a} r-cran-commonmark{a} r-cran-cpp11{a} r-cran-crayon{a} r-cran-curl{a} r-cran-data.table{a} r-cran-dbi{a} r-cran-dendextend{a} r-cran-digest{a} r-cran-evaluate{a} r-cran-evd{a} r-cran-fansi{a} r-cran-farver{a} r-cran-fastmap{a} r-cran-fontawesome{a} r-cran-formatr{a} r-cran-fs{a} r-cran-futile.logger{a} r-cran-futile.options{a} r-cran-ggplot2{a} r-cran-glue{a} r-cran-gridextra{a} r-cran-gtable{a} r-cran-gtools{a} r-cran-highr{a} r-cran-htmltools{a} r-cran-httpuv{a} r-cran-httr{a} r-cran-isoband{a} r-cran-jquerylib{a} r-cran-jsonlite{a} r-cran-kernsmooth{a} r-cran-knitr{a} r-cran-labeling{a} r-cran-lambda.r{a} r-cran-later{a} r-cran-lattice{a} r-cran-lifecycle{a} r-cran-littler{a} r-cran-locfit{a} r-cran-magrittr{a} r-cran-mass{a} r-cran-matrix{a} r-cran-matrixcalc{a} r-cran-matrixstats{a} r-cran-memoise{a} r-cran-mgcv{a} r-cran-mime{a} r-cran-mnormt{a} r-cran-munsell{a} r-cran-nlme{a} r-cran-openssl{a} r-cran-permute{a} r-cran-pillar{a} r-cran-pkgconfig{a} r-cran-pkgkitten{a} r-cran-plogr{a} r-cran-png{a} r-cran-promises{a} r-cran-psych{a} r-cran-r.methodss3{a} r-cran-r.oo{a} r-cran-r.utils{a} r-cran-r6{a} r-cran-rappdirs{a} r-cran-rcolorbrewer{a} r-cran-rcpp{a} r-cran-rcurl{a} r-cran-restfulr{a} r-cran-rjson{a} r-cran-rlang{a} r-cran-rmarkdown{a} r-cran-rsqlite{a} r-cran-sass{a} r-cran-scales{a} r-cran-shiny{a} r-cran-snow{a} r-cran-sourcetools{a} r-cran-statmod{a} r-cran-survival{a} r-cran-sys{a} r-cran-tibble{a} r-cran-tinytex{a} r-cran-truncdist{a} r-cran-utf8{a} r-cran-vctrs{a} r-cran-viridis{a} r-cran-viridislite{a} r-cran-withr{a} r-cran-xfun{a} r-cran-xml{a} r-cran-xtable{a} r-cran-yaml{a} readline-common{a} sensible-utils{a} tzdata{a} ucf{a} unzip{a} x11-common{a} xauth{a} xdg-utils{a} zip{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc cme curl devscripts git-buildpackage krb5-locales libarchive-cpio-perl libclass-c3-xs-perl libdevel-lexalias-perl libdevel-partialdump-perl libfile-mimeinfo-perl libglib2.0-data libgpm2 libio-compress-brotli-perl libldap-common libltdl-dev libmail-sendmail-perl libnet-dbus-perl libpng-tools libsasl2-modules libtasn1-doc libx11-protocol-perl lynx node-highlight.js node-jquery publicsuffix r-bioc-graph r-cran-ape r-cran-bench r-cran-brio r-cran-cairo r-cran-callr r-cran-circlize r-cran-cluster r-cran-corrplot r-cran-covr r-cran-dbitest r-cran-decor r-cran-desc r-cran-dichromat r-cran-downlit r-cran-dplyr r-cran-dt r-cran-dygraphs r-cran-dynamictreecut r-cran-formattable r-cran-fpc r-cran-future r-cran-generics r-cran-gert r-cran-gh r-cran-gparotation r-cran-gplots r-cran-gridsvg r-cran-heatmaply r-cran-hexbin r-cran-hmisc r-cran-hms r-cran-htmlwidgets r-cran-jpeg r-cran-kernlab r-cran-lavaan r-cran-lintr r-cran-lme4 r-cran-lobstr r-cran-lubridate r-cran-magick r-cran-mapproj r-cran-maps r-cran-markdown r-cran-microbenchmark r-cran-mockery r-cran-multcomp r-cran-mvtnorm r-cran-pkgdown r-cran-processx r-cran-profvis r-cran-progress r-cran-ps r-cran-purrr r-cran-pvclust r-cran-quantreg r-cran-r.devices r-cran-r.rsp r-cran-ragg r-cran-rcsdp r-cran-readr r-cran-remotes r-cran-renv r-cran-reticulate r-cran-rgl r-cran-rpart r-cran-rprojroot r-cran-rsconnect r-cran-rstudioapi r-cran-rsvg r-cran-runit r-cran-rvest r-cran-seriation r-cran-shinyjs r-cran-sodium r-cran-spelling r-cran-stringi r-cran-svglite r-cran-testit r-cran-testthat r-cran-thematic r-cran-tidyverse r-cran-unitizer r-cran-usethis r-cran-vcd r-cran-vdiffr r-cran-waldo r-cran-webshot r-cran-webutils r-cran-whoami r-cran-xml2 r-cran-xts r-cran-zeallot r-cran-zoo r-doc-html r-recommended shared-mime-info wget x11-utils x11-xserver-utils xdg-user-dirs 0 packages upgraded, 403 newly installed, 0 to remove and 0 not upgraded. Need to get 334 MB of archives. After unpacking 1114 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 tzdata all 2024b-3 [255 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-5 [69.3 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.3.2-2 [1347 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20240203 [158 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.45-3+b1 [314 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.45-3+b1 [102 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.45-3+b1 [43.4 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.22.5-2 [198 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-5 [1129 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.40.2-11 [91.2 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 architecture-properties arm64 0.2.3 [2184 B] Get: 17 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-4 [277 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3 [493 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.22.5-2 [723 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libcom-err2 arm64 1.47.1-1+b1 [23.1 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 comerr-dev arm64 2.1-1.47.1-1+b1 [55.1 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 dctrl-tools arm64 2.24-3+b1 [125 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.20 [89.7 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 libtool all 2.4.7-8 [517 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.0-1 [19.5 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.0-1 [8448 B] Get: 31 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libicu72 arm64 72.1-5+b1 [9239 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.2+b1 [630 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.22.5-2 [1532 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 38 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.20 [915 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 zip arm64 3.0-14+b1 [227 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 unzip arm64 6.0-28+b1 [158 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libpaper1 arm64 1.1.29+b2 [13.0 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 libpaper-utils arm64 1.1.29+b2 [9128 B] Get: 43 http://deb.debian.org/debian trixie/main arm64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 libblas3 arm64 3.12.0-3+b1 [98.9 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.6.4-1 [90.7 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 libbrotli1 arm64 1.1.0-2+b6 [297 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libpng16-16t64 arm64 1.6.44-2 [273 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 libfreetype6 arm64 2.13.3+dfsg-1 [422 kB] Get: 49 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-mono all 2.37-8 [489 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 fonts-dejavu-core all 2.37-8 [840 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 fontconfig-config arm64 2.15.0-1.1+b1 [318 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 libfontconfig1 arm64 2.15.0-1.1+b1 [387 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 libpixman-1-0 arm64 0.44.0-3 [168 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 libx11-data all 2:1.8.10-2 [337 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 libx11-6 arm64 2:1.8.10-2 [789 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 libxcb-render0 arm64 1.17.0-2+b1 [115 kB] Get: 60 http://deb.debian.org/debian trixie/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 libxext6 arm64 2:1.3.4-1+b2 [49.3 kB] Get: 62 http://deb.debian.org/debian trixie/main arm64 libxrender1 arm64 1:0.9.10-1.1+b2 [27.2 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 libcairo2 arm64 1.18.2-2 [483 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 libkrb5support0 arm64 1.21.3-3 [32.1 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 libk5crypto3 arm64 1.21.3-3 [80.8 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 libkeyutils1 arm64 1.6.3-4 [9352 B] Get: 67 http://deb.debian.org/debian trixie/main arm64 libkrb5-3 arm64 1.21.3-3 [310 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 libgssapi-krb5-2 arm64 1.21.3-3 [126 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-8 [20.0 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-8 [55.4 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 libldap-2.5-0 arm64 2.5.18+dfsg-3+b1 [175 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 libcurl4t64 arm64 8.11.0-1 [322 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 libdeflate0 arm64 1.22-1 [42.2 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 libglib2.0-0t64 arm64 2.82.2-2 [1409 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo arm64 1:2.1.5-3+b1 [173 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 libgfortran5 arm64 14.2.0-8 [361 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 liblapack3 arm64 3.12.0-3+b1 [1812 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 fontconfig arm64 2.15.0-1.1+b1 [463 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 libfribidi0 arm64 1.0.15-1 [71.8 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 libgraphite2-3 arm64 1.3.14-2+b1 [70.4 kB] Get: 85 http://deb.debian.org/debian trixie/main arm64 libharfbuzz0b arm64 10.0.1-1 [441 kB] Get: 86 http://deb.debian.org/debian trixie/main arm64 libthai-data all 0.1.29-2 [168 kB] Get: 87 http://deb.debian.org/debian trixie/main arm64 libdatrie1 arm64 0.2.13-3+b1 [37.6 kB] Get: 88 http://deb.debian.org/debian trixie/main arm64 libthai0 arm64 0.1.29-2+b1 [48.4 kB] Get: 89 http://deb.debian.org/debian trixie/main arm64 libpango-1.0-0 arm64 1.54.0+ds-3 [210 kB] Get: 90 http://deb.debian.org/debian trixie/main arm64 libpangoft2-1.0-0 arm64 1.54.0+ds-3 [51.8 kB] Get: 91 http://deb.debian.org/debian trixie/main arm64 libpangocairo-1.0-0 arm64 1.54.0+ds-3 [33.5 kB] Get: 92 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-5 [159 kB] Get: 93 http://deb.debian.org/debian trixie/main arm64 libtcl8.6 arm64 8.6.15+dfsg-2 [982 kB] Get: 94 http://deb.debian.org/debian trixie/main arm64 libjbig0 arm64 2.1-6.1+b2 [30.4 kB] Get: 95 http://deb.debian.org/debian trixie/main arm64 liblerc4 arm64 4.0.0+ds-5 [146 kB] Get: 96 http://deb.debian.org/debian trixie/main arm64 libsharpyuv0 arm64 1.4.0-0.1+b1 [112 kB] Get: 97 http://deb.debian.org/debian trixie/main arm64 libwebp7 arm64 1.4.0-0.1+b1 [268 kB] Get: 98 http://deb.debian.org/debian trixie/main arm64 libtiff6 arm64 4.5.1+git230720-5 [309 kB] Get: 99 http://deb.debian.org/debian trixie/main arm64 libtirpc-common all 1.3.4+ds-1.3 [10.9 kB] Get: 100 http://deb.debian.org/debian trixie/main arm64 libtirpc3t64 arm64 1.3.4+ds-1.3+b1 [78.7 kB] Get: 101 http://deb.debian.org/debian trixie/main arm64 libxft2 arm64 2.3.6-1+b2 [51.6 kB] Get: 102 http://deb.debian.org/debian trixie/main arm64 x11-common all 1:7.7+23.1 [216 kB] Get: 103 http://deb.debian.org/debian trixie/main arm64 libxss1 arm64 1:1.2.3-1+b2 [17.1 kB] Get: 104 http://deb.debian.org/debian trixie/main arm64 libtk8.6 arm64 8.6.15-1 [738 kB] Get: 105 http://deb.debian.org/debian trixie/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB] Get: 106 http://deb.debian.org/debian trixie/main arm64 libsm6 arm64 2:1.2.4-1 [34.2 kB] Get: 107 http://deb.debian.org/debian trixie/main arm64 libxt6t64 arm64 1:1.2.1-1.2+b1 [173 kB] Get: 108 http://deb.debian.org/debian trixie/main arm64 r-base-core arm64 4.4.2-1 [28.0 MB] Get: 109 http://deb.debian.org/debian trixie/main arm64 libgfortran-14-dev arm64 14.2.0-8 [418 kB] Get: 110 http://deb.debian.org/debian trixie/main arm64 gfortran-14-aarch64-linux-gnu arm64 14.2.0-8 [9791 kB] Get: 111 http://deb.debian.org/debian trixie/main arm64 gfortran-14 arm64 14.2.0-8 [12.2 kB] Get: 112 http://deb.debian.org/debian trixie/main arm64 gfortran-aarch64-linux-gnu arm64 4:14.2.0-1 [1284 B] Get: 113 http://deb.debian.org/debian trixie/main arm64 gfortran arm64 4:14.2.0-1 [1424 B] Get: 114 http://deb.debian.org/debian trixie/main arm64 libblas-dev arm64 3.12.0-3+b1 [106 kB] Get: 115 http://deb.debian.org/debian trixie/main arm64 liblapack-dev arm64 3.12.0-3+b1 [3709 kB] Get: 116 http://deb.debian.org/debian trixie/main arm64 libncurses6 arm64 6.5-2+b1 [96.1 kB] Get: 117 http://deb.debian.org/debian trixie/main arm64 libncurses-dev arm64 6.5-2+b1 [338 kB] Get: 118 http://deb.debian.org/debian trixie/main arm64 libreadline-dev arm64 8.2-5 [155 kB] Get: 119 http://deb.debian.org/debian trixie/main arm64 libjpeg62-turbo-dev arm64 1:2.1.5-3+b1 [293 kB] Get: 120 http://deb.debian.org/debian trixie/main arm64 libjpeg-dev arm64 1:2.1.5-3+b1 [72.2 kB] Get: 121 http://deb.debian.org/debian trixie/main arm64 libpcre2-16-0 arm64 10.42-4+b2 [220 kB] Get: 122 http://deb.debian.org/debian trixie/main arm64 libpcre2-32-0 arm64 10.42-4+b2 [211 kB] Get: 123 http://deb.debian.org/debian trixie/main arm64 libpcre2-posix3 arm64 10.42-4+b2 [55.9 kB] Get: 124 http://deb.debian.org/debian trixie/main arm64 libpcre2-dev arm64 10.42-4+b2 [683 kB] Get: 125 http://deb.debian.org/debian trixie/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 126 http://deb.debian.org/debian trixie/main arm64 libpng-dev arm64 1.6.44-2 [360 kB] Get: 127 http://deb.debian.org/debian trixie/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 128 http://deb.debian.org/debian trixie/main arm64 liblzma-dev arm64 5.6.3-1+b1 [312 kB] Get: 129 http://deb.debian.org/debian trixie/main arm64 icu-devtools arm64 72.1-5+b1 [195 kB] Get: 130 http://deb.debian.org/debian trixie/main arm64 libicu-dev arm64 72.1-5+b1 [10.3 MB] Get: 131 http://deb.debian.org/debian trixie/main arm64 libxmuu1 arm64 2:1.1.3-3+b3 [22.0 kB] Get: 132 http://deb.debian.org/debian trixie/main arm64 xauth arm64 1:1.1.2-1+b1 [35.9 kB] Get: 133 http://deb.debian.org/debian trixie/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 134 http://deb.debian.org/debian trixie/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 135 http://deb.debian.org/debian trixie/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 136 http://deb.debian.org/debian trixie/main arm64 libtirpc-dev arm64 1.3.4+ds-1.3+b1 [192 kB] Get: 137 http://deb.debian.org/debian trixie/main arm64 libdeflate-dev arm64 1.22-1 [51.2 kB] Get: 138 http://deb.debian.org/debian trixie/main arm64 r-base-dev all 4.4.2-1 [4516 B] Get: 139 http://deb.debian.org/debian trixie/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get: 140 http://deb.debian.org/debian trixie/main arm64 libswitch-perl all 2.17-3 [20.3 kB] Get: 141 http://deb.debian.org/debian trixie/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get: 142 http://deb.debian.org/debian trixie/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get: 143 http://deb.debian.org/debian trixie/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get: 144 http://deb.debian.org/debian trixie/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get: 145 http://deb.debian.org/debian trixie/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get: 146 http://deb.debian.org/debian trixie/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get: 147 http://deb.debian.org/debian trixie/main arm64 liburi-perl all 5.30-1 [105 kB] Get: 148 http://deb.debian.org/debian trixie/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get: 149 http://deb.debian.org/debian trixie/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get: 150 http://deb.debian.org/debian trixie/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get: 151 http://deb.debian.org/debian trixie/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get: 152 http://deb.debian.org/debian trixie/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b2 [10.6 kB] Get: 153 http://deb.debian.org/debian trixie/main arm64 libdynaloader-functions-perl all 0.004-1 [12.1 kB] Get: 154 http://deb.debian.org/debian trixie/main arm64 libdevel-callchecker-perl arm64 0.009-1+b1 [16.3 kB] Get: 155 http://deb.debian.org/debian trixie/main arm64 libparams-classify-perl arm64 0.015-2+b4 [22.3 kB] Get: 156 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get: 157 http://deb.debian.org/debian trixie/main arm64 libtry-tiny-perl all 0.32-1 [22.9 kB] Get: 158 http://deb.debian.org/debian trixie/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get: 159 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get: 160 http://deb.debian.org/debian trixie/main arm64 libclass-load-perl all 0.25-2 [15.3 kB] Get: 161 http://deb.debian.org/debian trixie/main arm64 libclass-load-xs-perl arm64 0.10-2+b4 [14.3 kB] Get: 162 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get: 163 http://deb.debian.org/debian trixie/main arm64 libdevel-globaldestruction-perl all 0.14-4 [7144 B] Get: 164 http://deb.debian.org/debian trixie/main arm64 libalgorithm-c3-perl all 0.11-2 [10.8 kB] Get: 165 http://deb.debian.org/debian trixie/main arm64 libclass-c3-perl all 0.35-2 [21.0 kB] Get: 166 http://deb.debian.org/debian trixie/main arm64 libmro-compat-perl all 0.15-2 [11.8 kB] Get: 167 http://deb.debian.org/debian trixie/main arm64 libdevel-overloadinfo-perl all 0.007-1 [7896 B] Get: 168 http://deb.debian.org/debian trixie/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get: 169 http://deb.debian.org/debian trixie/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get: 170 http://deb.debian.org/debian trixie/main arm64 libeval-closure-perl all 0.14-3 [11.2 kB] Get: 171 http://deb.debian.org/debian trixie/main arm64 libdist-checkconflicts-perl all 0.11-2 [10.5 kB] Get: 172 http://deb.debian.org/debian trixie/main arm64 libmodule-runtime-conflicts-perl all 0.003-2 [7356 B] Get: 173 http://deb.debian.org/debian trixie/main arm64 libpackage-deprecationmanager-perl all 0.18-1 [17.6 kB] Get: 174 http://deb.debian.org/debian trixie/main arm64 libpackage-stash-xs-perl arm64 0.30-1+b4 [19.0 kB] Get: 175 http://deb.debian.org/debian trixie/main arm64 libmoose-perl arm64 2.2207-1+b2 [766 kB] Get: 176 http://deb.debian.org/debian trixie/main arm64 libvariable-magic-perl arm64 0.64-1+b1 [43.9 kB] Get: 177 http://deb.debian.org/debian trixie/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get: 178 http://deb.debian.org/debian trixie/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get: 179 http://deb.debian.org/debian trixie/main arm64 libsub-name-perl arm64 0.27-1+b3 [12.4 kB] Get: 180 http://deb.debian.org/debian trixie/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get: 181 http://deb.debian.org/debian trixie/main arm64 libnghttp3-9 arm64 1.4.0-1+b1 [59.6 kB] Get: 182 http://deb.debian.org/debian trixie/main arm64 libngtcp2-16 arm64 1.6.0-1 [112 kB] Get: 183 http://deb.debian.org/debian trixie/main arm64 libngtcp2-crypto-gnutls8 arm64 1.6.0-1 [18.5 kB] Get: 184 http://deb.debian.org/debian trixie/main arm64 libcurl3t64-gnutls arm64 8.11.0-1 [331 kB] Get: 185 http://deb.debian.org/debian trixie/main arm64 libwww-curl-perl arm64 4.17-11 [57.3 kB] Get: 186 http://deb.debian.org/debian trixie/main arm64 libwww-curl-simple-perl all 0.100191-3 [12.6 kB] Get: 187 http://deb.debian.org/debian trixie/main arm64 dh-r all 20231212 [42.2 kB] Get: 188 http://deb.debian.org/debian trixie/main arm64 fonts-font-awesome all 5.0.10+really4.7.0~dfsg-4.1 [517 kB] Get: 189 http://deb.debian.org/debian trixie/main arm64 fonts-glyphicons-halflings all 1.009~3.4.1+dfsg-3 [162 kB] Get: 190 http://deb.debian.org/debian trixie/main arm64 fonts-mathjax all 2.7.9+dfsg-1 [2210 kB] Get: 191 http://deb.debian.org/debian trixie/main arm64 hdf5-helpers arm64 1.10.10+repack-4 [23.5 kB] Get: 192 http://deb.debian.org/debian trixie/main arm64 javascript-common all 11+nmu1 [6260 B] Get: 193 http://deb.debian.org/debian trixie/main arm64 libgssrpc4t64 arm64 1.21.3-3 [56.7 kB] Get: 194 http://deb.debian.org/debian trixie/main arm64 libkadm5clnt-mit12 arm64 1.21.3-3 [40.3 kB] Get: 195 http://deb.debian.org/debian trixie/main arm64 libkdb5-10t64 arm64 1.21.3-3 [40.8 kB] Get: 196 http://deb.debian.org/debian trixie/main arm64 libkadm5srv-mit12 arm64 1.21.3-3 [52.2 kB] Get: 197 http://deb.debian.org/debian trixie/main arm64 krb5-multidev arm64 1.21.3-3 [126 kB] Get: 198 http://deb.debian.org/debian trixie/main arm64 libaec0 arm64 1.1.3-1+b1 [22.5 kB] Get: 199 http://deb.debian.org/debian trixie/main arm64 libsz2 arm64 1.1.3-1+b1 [8044 B] Get: 200 http://deb.debian.org/debian trixie/main arm64 libaec-dev arm64 1.1.3-1+b1 [20.2 kB] Get: 201 http://deb.debian.org/debian trixie/main arm64 libsnappy1v5 arm64 1.2.1-1+b1 [28.7 kB] Get: 202 http://deb.debian.org/debian trixie/main arm64 libblosc1 arm64 1.21.5+ds-1+b2 [39.2 kB] Get: 203 http://deb.debian.org/debian trixie/main arm64 libboost1.83-dev arm64 1.83.0-3.2 [10.6 MB] Get: 204 http://deb.debian.org/debian trixie/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 205 http://deb.debian.org/debian trixie/main arm64 libbrotli-dev arm64 1.1.0-2+b6 [308 kB] Get: 206 http://deb.debian.org/debian trixie/main arm64 libidn2-dev arm64 2.3.7-2+b1 [122 kB] Get: 207 http://deb.debian.org/debian trixie/main arm64 libkrb5-dev arm64 1.21.3-3 [15.8 kB] Get: 208 http://deb.debian.org/debian trixie/main arm64 libldap-dev arm64 2.5.18+dfsg-3+b1 [300 kB] Get: 209 http://deb.debian.org/debian trixie/main arm64 libnghttp2-dev arm64 1.64.0-1 [112 kB] Get: 210 http://deb.debian.org/debian trixie/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 211 http://deb.debian.org/debian trixie/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-2+b2 [329 kB] Get: 212 http://deb.debian.org/debian trixie/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-2+b2 [621 kB] Get: 213 http://deb.debian.org/debian trixie/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 214 http://deb.debian.org/debian trixie/main arm64 libunbound8 arm64 1.22.0-1 [553 kB] Get: 215 http://deb.debian.org/debian trixie/main arm64 libgnutls-dane0t64 arm64 3.8.8-2 [446 kB] Get: 216 http://deb.debian.org/debian trixie/main arm64 libgnutls-openssl27t64 arm64 3.8.8-2 [446 kB] Get: 217 http://deb.debian.org/debian trixie/main arm64 libp11-kit-dev arm64 0.25.5-2+b1 [208 kB] Get: 218 http://deb.debian.org/debian trixie/main arm64 libtasn1-6-dev arm64 4.19.0-3+b3 [96.5 kB] Get: 219 http://deb.debian.org/debian trixie/main arm64 nettle-dev arm64 3.10-1+b1 [1324 kB] Get: 220 http://deb.debian.org/debian trixie/main arm64 libgnutls28-dev arm64 3.8.8-2 [1404 kB] Get: 221 http://deb.debian.org/debian trixie/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-2+b5 [67.5 kB] Get: 222 http://deb.debian.org/debian trixie/main arm64 libssl-dev arm64 3.3.2-2 [3185 kB] Get: 223 http://deb.debian.org/debian trixie/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 224 http://deb.debian.org/debian trixie/main arm64 libzstd-dev arm64 1.5.6+dfsg-1+b1 [329 kB] Get: 225 http://deb.debian.org/debian trixie/main arm64 libcurl4-openssl-dev arm64 8.11.0-1 [447 kB] Get: 226 http://deb.debian.org/debian trixie/main arm64 libhdf5-103-1t64 arm64 1.10.10+repack-4 [1050 kB] Get: 227 http://deb.debian.org/debian trixie/main arm64 libhdf5-cpp-103-1t64 arm64 1.10.10+repack-4 [118 kB] Get: 228 http://deb.debian.org/debian trixie/main arm64 libhdf5-fortran-102t64 arm64 1.10.10+repack-4 [88.1 kB] Get: 229 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-100t64 arm64 1.10.10+repack-4 [60.9 kB] Get: 230 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-fortran-100t64 arm64 1.10.10+repack-4 [39.0 kB] Get: 231 http://deb.debian.org/debian trixie/main arm64 libhdf5-hl-cpp-100t64 arm64 1.10.10+repack-4 [21.4 kB] Get: 232 http://deb.debian.org/debian trixie/main arm64 libhdf5-dev arm64 1.10.10+repack-4 [2697 kB] Get: 233 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap all 3.4.1+dfsg-3 [172 kB] Get: 234 http://deb.debian.org/debian trixie/main arm64 libjs-popper.js all 1.16.1+ds-6 [52.4 kB] Get: 235 http://deb.debian.org/debian trixie/main arm64 libjs-bootstrap4 all 4.6.1+dfsg1-4 [517 kB] Get: 236 http://deb.debian.org/debian trixie/main arm64 libjs-d3 all 3.5.17-4 [132 kB] Get: 237 http://deb.debian.org/debian trixie/main arm64 libjs-es5-shim all 4.6.7-2 [47.4 kB] Get: 238 http://deb.debian.org/debian trixie/main arm64 libjs-highlight.js all 9.18.5+dfsg1-2 [397 kB] Get: 239 http://deb.debian.org/debian trixie/main arm64 libjs-jquery all 3.6.1+dfsg+~3.5.14-1 [326 kB] Get: 240 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-datatables all 1.11.5+dfsg-2 [144 kB] Get: 241 http://deb.debian.org/debian trixie/main arm64 libjs-sifter.js all 0.6.0+dfsg-3 [12.2 kB] Get: 242 http://deb.debian.org/debian trixie/main arm64 libjs-microplugin.js all 0.0.3+dfsg-1.1 [3672 B] Get: 243 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-selectize.js all 0.12.6+dfsg-1.1 [52.1 kB] Get: 244 http://deb.debian.org/debian trixie/main arm64 libjs-jquery-ui all 1.13.2+dfsg-1 [250 kB] Get: 245 http://deb.debian.org/debian trixie/main arm64 libjs-json all 0~20221030+~1.0.8-1 [20.0 kB] Get: 246 http://deb.debian.org/debian trixie/main arm64 libjs-mathjax all 2.7.9+dfsg-1 [5667 kB] Get: 247 http://deb.debian.org/debian trixie/main arm64 libjs-modernizr all 3.13.0-0.1 [191 kB] Get: 248 http://deb.debian.org/debian trixie/main arm64 libjs-prettify all 2015.12.04+dfsg-1.1 [41.7 kB] Get: 249 http://deb.debian.org/debian trixie/main arm64 libjs-twitter-bootstrap-datepicker all 1.3.1+dfsg1-4.1 [32.1 kB] Get: 250 http://deb.debian.org/debian trixie/main arm64 liblua5.4-0 arm64 5.4.6-3+b2 [133 kB] Get: 251 http://deb.debian.org/debian trixie/main arm64 libnuma1 arm64 2.0.18-1+b1 [21.8 kB] Get: 252 http://deb.debian.org/debian trixie/main arm64 libuv1t64 arm64 1.48.0-7 [143 kB] Get: 253 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-1+b2 [49.3 kB] Get: 254 http://deb.debian.org/debian trixie/main arm64 r-cran-littler arm64 0.3.20-1+b1 [103 kB] Get: 255 http://deb.debian.org/debian trixie/main arm64 littler all 0.3.20-1 [16.0 kB] Get: 256 http://deb.debian.org/debian trixie/main arm64 node-bootstrap-sass all 3.4.3-2 [186 kB] Get: 257 http://deb.debian.org/debian trixie/main arm64 node-html5shiv all 3.7.3+dfsg-5 [13.2 kB] Get: 258 http://deb.debian.org/debian trixie/main arm64 node-normalize.css all 8.0.1-5 [12.7 kB] Get: 259 http://deb.debian.org/debian trixie/main arm64 pandoc-data all 3.1.11.1-3 [459 kB] Get: 260 http://deb.debian.org/debian trixie/main arm64 pandoc arm64 3.1.11.1+ds-2 [26.2 MB] Get: 261 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocgenerics all 0.50.0-2 [607 kB] Get: 262 http://deb.debian.org/debian trixie/main arm64 r-bioc-biobase arm64 2.64.0-4 [2132 kB] Get: 263 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4vectors arm64 0.42.1+dfsg-2 [1889 kB] Get: 264 http://deb.debian.org/debian trixie/main arm64 r-bioc-iranges arm64 2.38.1-1 [2302 kB] Get: 265 http://deb.debian.org/debian trixie/main arm64 r-cran-dbi all 1.2.3-1 [852 kB] Get: 266 http://deb.debian.org/debian trixie/main arm64 r-cran-bit arm64 4.0.5-1+b1 [1075 kB] Get: 267 http://deb.debian.org/debian trixie/main arm64 r-cran-bit64 arm64 4.0.5-1+b1 [475 kB] Get: 268 http://deb.debian.org/debian trixie/main arm64 r-cran-rlang arm64 1.1.4-1+b1 [1708 kB] Get: 269 http://deb.debian.org/debian trixie/main arm64 r-cran-cli arm64 3.6.3-1 [1340 kB] Get: 270 http://deb.debian.org/debian trixie/main arm64 r-cran-glue arm64 1.7.0-1+b1 [159 kB] Get: 271 http://deb.debian.org/debian trixie/main arm64 r-cran-lifecycle all 1.0.4+dfsg-1 [110 kB] Get: 272 http://deb.debian.org/debian trixie/main arm64 r-cran-vctrs arm64 0.6.5-1+b1 [1378 kB] Get: 273 http://deb.debian.org/debian trixie/main arm64 r-cran-blob all 1.2.4-1 [49.6 kB] Get: 274 http://deb.debian.org/debian trixie/main arm64 r-cran-fastmap arm64 1.2.0-1 [68.8 kB] Get: 275 http://deb.debian.org/debian trixie/main arm64 r-cran-cachem arm64 1.1.0-1 [74.0 kB] Get: 276 http://deb.debian.org/debian trixie/main arm64 r-cran-memoise all 2.0.1-1 [53.8 kB] Get: 277 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgconfig all 2.0.3-2 [19.6 kB] Get: 278 http://deb.debian.org/debian trixie/main arm64 r-cran-plogr all 0.2.0-3 [14.9 kB] Get: 279 http://deb.debian.org/debian trixie/main arm64 r-cran-cpp11 all 0.5.0-1 [213 kB] Get: 280 http://deb.debian.org/debian trixie/main arm64 r-cran-rsqlite arm64 2.3.7-2+b1 [1133 kB] Get: 281 http://deb.debian.org/debian trixie/main arm64 r-cran-curl arm64 5.2.3+dfsg-1 [177 kB] Get: 282 http://deb.debian.org/debian trixie/main arm64 r-cran-jsonlite arm64 1.8.9+dfsg-1 [443 kB] Get: 283 http://deb.debian.org/debian trixie/main arm64 r-cran-mime arm64 0.12-2+b1 [36.1 kB] Get: 284 http://deb.debian.org/debian trixie/main arm64 r-cran-sys arm64 3.4.3-1 [44.2 kB] Get: 285 http://deb.debian.org/debian trixie/main arm64 r-cran-askpass arm64 1.2.1-1 [24.4 kB] Get: 286 http://deb.debian.org/debian trixie/main arm64 r-cran-openssl arm64 2.2.0+dfsg-1+b1 [399 kB] Get: 287 http://deb.debian.org/debian trixie/main arm64 r-cran-r6 all 2.5.1-1 [105 kB] Get: 288 http://deb.debian.org/debian trixie/main arm64 r-cran-httr all 1.4.7+dfsg-1 [459 kB] Get: 289 http://deb.debian.org/debian trixie/main arm64 r-cran-png arm64 0.1-8-1+b2 [41.3 kB] Get: 290 http://deb.debian.org/debian trixie/main arm64 r-bioc-zlibbioc all 1.50.0+dfsg-2 [9876 B] Get: 291 http://deb.debian.org/debian trixie/main arm64 r-bioc-xvector arm64 0.44.0-1 [620 kB] Get: 292 http://deb.debian.org/debian trixie/main arm64 r-bioc-ucsc.utils all 1.0.0+ds-2 [77.0 kB] Get: 293 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodbdata all 1.2.12-1 [12.6 MB] Get: 294 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomeinfodb all 1.40.1+dfsg-1 [3843 kB] Get: 295 http://deb.debian.org/debian trixie/main arm64 r-cran-crayon all 1.5.2-1 [165 kB] Get: 296 http://deb.debian.org/debian trixie/main arm64 r-bioc-biostrings arm64 2.72.1+dfsg-1 [13.2 MB] Get: 297 http://deb.debian.org/debian trixie/main arm64 r-bioc-keggrest all 1.44.1+dfsg-1 [183 kB] Get: 298 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotationdbi all 1.66.0-1 [4682 kB] Get: 299 http://deb.debian.org/debian trixie/main arm64 r-cran-xml arm64 3.99-0.17-1+b1 [1760 kB] Get: 300 http://deb.debian.org/debian trixie/main arm64 r-cran-xtable all 1:1.8-4-2 [689 kB] Get: 301 http://deb.debian.org/debian trixie/main arm64 r-bioc-annotate all 1.82.0+dfsg-1 [1763 kB] Get: 302 http://deb.debian.org/debian trixie/main arm64 r-cran-lattice arm64 0.22-6-1+b1 [1417 kB] Get: 303 http://deb.debian.org/debian trixie/main arm64 r-cran-matrix arm64 1.7-1-1 [4023 kB] Get: 304 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixstats arm64 1.4.1-1 [493 kB] Get: 305 http://deb.debian.org/debian trixie/main arm64 r-bioc-matrixgenerics all 1.16.0-2 [423 kB] Get: 306 http://deb.debian.org/debian trixie/main arm64 r-cran-abind all 1.4-8-1 [68.1 kB] Get: 307 http://deb.debian.org/debian trixie/main arm64 r-bioc-s4arrays arm64 1.4.1+dfsg-1 [523 kB] Get: 308 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsearray arm64 1.4.8+dfsg-1 [1247 kB] Get: 309 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedarray arm64 0.30.1+dfsg-1 [1847 kB] Get: 310 http://deb.debian.org/debian trixie/main arm64 r-cran-pkgkitten all 0.2.4-1 [29.1 kB] Get: 311 http://deb.debian.org/debian trixie/main arm64 r-cran-rcpp arm64 1.0.13-1-1 [2057 kB] Get: 312 http://deb.debian.org/debian trixie/main arm64 r-bioc-beachmat arm64 2.20.0+ds-1 [1317 kB] Get: 313 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocio all 1.14.0+dfsg-1 [210 kB] Get: 314 http://deb.debian.org/debian trixie/main arm64 r-cran-formatr all 1.14-2 [152 kB] Get: 315 http://deb.debian.org/debian trixie/main arm64 r-cran-lambda.r all 1.2.4-2 [118 kB] Get: 316 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.options all 1.0.1-3 [20.0 kB] Get: 317 http://deb.debian.org/debian trixie/main arm64 r-cran-futile.logger all 1.4.3-4 [98.4 kB] Get: 318 http://deb.debian.org/debian trixie/main arm64 r-cran-snow all 1:0.4.4-2 [98.9 kB] Get: 319 http://deb.debian.org/debian trixie/main arm64 r-cran-codetools all 0.2-20-1 [91.1 kB] Get: 320 http://deb.debian.org/debian trixie/main arm64 r-cran-bh all 1.84.0-1 [5912 B] Get: 321 http://deb.debian.org/debian trixie/main arm64 r-bioc-biocparallel arm64 1.38.0-2 [1321 kB] Get: 322 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicranges arm64 1.56.1+dfsg-1 [1842 kB] Get: 323 http://deb.debian.org/debian trixie/main arm64 r-cran-bitops arm64 1.0-8-1 [30.7 kB] Get: 324 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhtslib arm64 3.0.0+dfsg-1 [1311 kB] Get: 325 http://deb.debian.org/debian trixie/main arm64 r-bioc-rsamtools arm64 2.20.0+dfsg-1 [3565 kB] Get: 326 http://deb.debian.org/debian trixie/main arm64 r-bioc-summarizedexperiment all 1.34.0+dfsg-1 [1102 kB] Get: 327 http://deb.debian.org/debian trixie/main arm64 r-bioc-genomicalignments arm64 1.40.0-1 [2160 kB] Get: 328 http://deb.debian.org/debian trixie/main arm64 r-cran-rcurl arm64 1.98-1.16+dfsg-1 [798 kB] Get: 329 http://deb.debian.org/debian trixie/main arm64 r-cran-rjson arm64 0.2.23-1 [99.0 kB] Get: 330 http://deb.debian.org/debian trixie/main arm64 r-cran-yaml arm64 2.3.10-1 [103 kB] Get: 331 http://deb.debian.org/debian trixie/main arm64 r-cran-restfulr arm64 0.0.15-1+b1 [389 kB] Get: 332 http://deb.debian.org/debian trixie/main arm64 r-bioc-rtracklayer arm64 1.64.0-1 [5051 kB] Get: 333 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsgenome all 1.72.0-1 [6812 kB] Get: 334 http://deb.debian.org/debian trixie/main arm64 r-cran-farver arm64 2.1.2-1+b1 [1397 kB] Get: 335 http://deb.debian.org/debian trixie/main arm64 r-cran-labeling all 0.4.3-1 [62.4 kB] Get: 336 http://deb.debian.org/debian trixie/main arm64 r-cran-colorspace arm64 2.1-1+dfsg-1 [1713 kB] Get: 337 http://deb.debian.org/debian trixie/main arm64 r-cran-munsell all 0.5.1-1 [237 kB] Get: 338 http://deb.debian.org/debian trixie/main arm64 r-cran-rcolorbrewer all 1.1-3-1 [54.7 kB] Get: 339 http://deb.debian.org/debian trixie/main arm64 r-cran-viridislite all 0.4.2-2 [1299 kB] Get: 340 http://deb.debian.org/debian trixie/main arm64 r-cran-scales all 1.3.0-1 [677 kB] Get: 341 http://deb.debian.org/debian trixie/main arm64 r-cran-locfit arm64 1.5-9.10-1 [503 kB] Get: 342 http://deb.debian.org/debian trixie/main arm64 r-cran-gtools arm64 3.9.5-1+b1 [366 kB] Get: 343 http://deb.debian.org/debian trixie/main arm64 r-cran-data.table arm64 1.16.2+dfsg-1 [1958 kB] Get: 344 http://deb.debian.org/debian trixie/main arm64 r-cran-r.methodss3 all 1.8.2-1 [84.5 kB] Get: 345 http://deb.debian.org/debian trixie/main arm64 r-cran-r.oo all 1.26.0-1 [961 kB] Get: 346 http://deb.debian.org/debian trixie/main arm64 r-cran-r.utils all 2.12.3-1 [1396 kB] Get: 347 http://deb.debian.org/debian trixie/main arm64 r-bioc-sparsematrixstats arm64 1.16.0+dfsg-1 [904 kB] Get: 348 http://deb.debian.org/debian trixie/main arm64 r-bioc-delayedmatrixstats all 1.26.0+ds-1 [487 kB] Get: 349 http://deb.debian.org/debian trixie/main arm64 r-cran-permute all 0.9-7-1 [225 kB] Get: 350 http://deb.debian.org/debian trixie/main arm64 r-cran-statmod arm64 1.5.0-1+b1 [301 kB] Get: 351 http://deb.debian.org/debian trixie/main arm64 r-bioc-limma arm64 3.60.6+dfsg-1 [2006 kB] Get: 352 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5lib arm64 1.26.0+dfsg-1 [104 kB] Get: 353 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5filters arm64 1.16.0+dfsg-1 [137 kB] Get: 354 http://deb.debian.org/debian trixie/main arm64 r-bioc-rhdf5 arm64 2.48.0+dfsg-3 [852 kB] Get: 355 http://deb.debian.org/debian trixie/main arm64 r-bioc-hdf5array arm64 1.32.1-1 [8768 kB] Get: 356 http://deb.debian.org/debian trixie/main arm64 r-bioc-bsseq arm64 1.40.0+dfsg-1 [2956 kB] Get: 357 http://deb.debian.org/debian trixie/main arm64 r-bioc-dss arm64 2.52.0+dfsg-1 [607 kB] Get: 358 http://deb.debian.org/debian trixie/main arm64 r-bioc-edger arm64 4.2.2+dfsg-1 [1165 kB] Get: 359 http://deb.debian.org/debian trixie/main arm64 r-cran-survival arm64 3.7-0-1+b1 [6292 kB] Get: 360 http://deb.debian.org/debian trixie/main arm64 r-bioc-genefilter arm64 1.86.0-1 [1108 kB] Get: 361 http://deb.debian.org/debian trixie/main arm64 r-cran-nlme arm64 3.1.166-1 [2326 kB] Get: 362 http://deb.debian.org/debian trixie/main arm64 r-cran-mgcv arm64 1.9-1-1+b1 [3218 kB] Get: 363 http://deb.debian.org/debian trixie/main arm64 r-bioc-sva arm64 3.52.0-1 [455 kB] Get: 364 http://deb.debian.org/debian trixie/main arm64 r-cran-base64enc arm64 0.1-3-3+b1 [28.6 kB] Get: 365 http://deb.debian.org/debian trixie/main arm64 r-cran-digest arm64 0.6.37-1 [204 kB] Get: 366 http://deb.debian.org/debian trixie/main arm64 r-cran-htmltools arm64 0.5.8.1-1+b1 [378 kB] Get: 367 http://deb.debian.org/debian trixie/main arm64 r-cran-jquerylib all 0.1.4+dfsg-4 [13.1 kB] Get: 368 http://deb.debian.org/debian trixie/main arm64 r-cran-fs arm64 1.6.4+dfsg-1+b1 [245 kB] Get: 369 http://deb.debian.org/debian trixie/main arm64 r-cran-rappdirs arm64 0.3.3-1+b1 [49.3 kB] Get: 370 http://deb.debian.org/debian trixie/main arm64 r-cran-sass arm64 0.4.9+dfsg-1+b1 [878 kB] Get: 371 http://deb.debian.org/debian trixie/main arm64 r-cran-bslib all 0.7.0+dfsg-1 [4365 kB] Get: 372 http://deb.debian.org/debian trixie/main arm64 r-cran-commonmark arm64 1.9.1-1 [107 kB] Get: 373 http://deb.debian.org/debian trixie/main arm64 r-cran-magrittr arm64 2.0.3-1+b1 [203 kB] Get: 374 http://deb.debian.org/debian trixie/main arm64 r-cran-gtable all 0.3.6+dfsg-1 [228 kB] Get: 375 http://deb.debian.org/debian trixie/main arm64 r-cran-isoband arm64 0.2.7-1+b1 [1614 kB] Get: 376 http://deb.debian.org/debian trixie/main arm64 r-cran-mass arm64 7.3-61-1+b1 [1112 kB] Get: 377 http://deb.debian.org/debian trixie/main arm64 r-cran-fansi arm64 1.0.5-1+b1 [626 kB] Get: 378 http://deb.debian.org/debian trixie/main arm64 r-cran-utf8 arm64 1.2.4-1+b1 [133 kB] Get: 379 http://deb.debian.org/debian trixie/main arm64 r-cran-pillar all 1.9.0+dfsg-1 [463 kB] Get: 380 http://deb.debian.org/debian trixie/main arm64 r-cran-tibble arm64 3.2.1+dfsg-2+b1 [425 kB] Get: 381 http://deb.debian.org/debian trixie/main arm64 r-cran-withr all 3.0.2+dfsg-1 [226 kB] Get: 382 http://deb.debian.org/debian trixie/main arm64 r-cran-ggplot2 all 3.5.1+dfsg-1 [3933 kB] Get: 383 http://deb.debian.org/debian trixie/main arm64 r-cran-gridextra all 2.3-3 [1024 kB] Get: 384 http://deb.debian.org/debian trixie/main arm64 r-cran-viridis all 0.6.5-1 [2991 kB] Get: 385 http://deb.debian.org/debian trixie/main arm64 r-cran-dendextend all 1.18.1+dfsg-1 [1102 kB] Get: 386 http://deb.debian.org/debian trixie/main arm64 r-cran-evaluate all 1.0.0-1 [112 kB] Get: 387 http://deb.debian.org/debian trixie/main arm64 r-cran-evd arm64 2.3-7.1-1 [1663 kB] Get: 388 http://deb.debian.org/debian trixie/main arm64 r-cran-fontawesome all 0.5.2-1 [1286 kB] Get: 389 http://deb.debian.org/debian trixie/main arm64 r-cran-xfun arm64 0.49+dfsg-1 [546 kB] Get: 390 http://deb.debian.org/debian trixie/main arm64 r-cran-highr all 0.11+dfsg-1 [38.3 kB] Get: 391 http://deb.debian.org/debian trixie/main arm64 r-cran-later arm64 1.3.2+dfsg-1+b1 [113 kB] Get: 392 http://deb.debian.org/debian trixie/main arm64 r-cran-promises arm64 1.3.0+dfsg-1+b1 [283 kB] Get: 393 http://deb.debian.org/debian trixie/main arm64 r-cran-httpuv arm64 1.6.15+dfsg-1+b1 [461 kB] Get: 394 http://deb.debian.org/debian trixie/main arm64 r-cran-kernsmooth arm64 2.23-24-1+b1 [92.7 kB] Get: 395 http://deb.debian.org/debian trixie/main arm64 r-cran-knitr all 1.48+dfsg-1 [912 kB] Get: 396 http://deb.debian.org/debian trixie/main arm64 r-cran-matrixcalc all 1.0.6-2 [200 kB] Get: 397 http://deb.debian.org/debian trixie/main arm64 r-cran-mnormt arm64 2.1.1-2+b1 [173 kB] Get: 398 http://deb.debian.org/debian trixie/main arm64 r-cran-psych all 2.4.1-1 [3397 kB] Get: 399 http://deb.debian.org/debian trixie/main arm64 r-cran-tinytex all 0.53-1 [146 kB] Get: 400 http://deb.debian.org/debian trixie/main arm64 r-cran-sourcetools arm64 0.1.7-1-1+b1 [45.0 kB] Get: 401 http://deb.debian.org/debian trixie/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 r-cran-truncdist all 1.0-2-4 [34.4 kB] Fetched 334 MB in 1s (245 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) Preparing to unpack .../000-tzdata_2024b-3_all.deb ... Unpacking tzdata (2024b-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-5_all.deb ... Unpacking readline-common (8.2-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../002-sensible-utils_0.0.24_all.deb ... 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Unpacking libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../091-libreadline8t64_8.2-5_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-5) ... Selecting previously unselected package libtcl8.6:arm64. Preparing to unpack .../092-libtcl8.6_8.6.15+dfsg-2_arm64.deb ... Unpacking libtcl8.6:arm64 (8.6.15+dfsg-2) ... Selecting previously unselected package libjbig0:arm64. Preparing to unpack .../093-libjbig0_2.1-6.1+b2_arm64.deb ... Unpacking libjbig0:arm64 (2.1-6.1+b2) ... Selecting previously unselected package liblerc4:arm64. Preparing to unpack .../094-liblerc4_4.0.0+ds-5_arm64.deb ... Unpacking liblerc4:arm64 (4.0.0+ds-5) ... Selecting previously unselected package libsharpyuv0:arm64. Preparing to unpack .../095-libsharpyuv0_1.4.0-0.1+b1_arm64.deb ... Unpacking libsharpyuv0:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libwebp7:arm64. Preparing to unpack .../096-libwebp7_1.4.0-0.1+b1_arm64.deb ... Unpacking libwebp7:arm64 (1.4.0-0.1+b1) ... Selecting previously unselected package libtiff6:arm64. Preparing to unpack .../097-libtiff6_4.5.1+git230720-5_arm64.deb ... Unpacking libtiff6:arm64 (4.5.1+git230720-5) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../098-libtirpc-common_1.3.4+ds-1.3_all.deb ... Unpacking libtirpc-common (1.3.4+ds-1.3) ... Selecting previously unselected package libtirpc3t64:arm64. Preparing to unpack .../099-libtirpc3t64_1.3.4+ds-1.3+b1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3 to /lib/aarch64-linux-gnu/libtirpc.so.3.usr-is-merged by libtirpc3t64' Adding 'diversion of /lib/aarch64-linux-gnu/libtirpc.so.3.0.0 to /lib/aarch64-linux-gnu/libtirpc.so.3.0.0.usr-is-merged by libtirpc3t64' Unpacking libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Selecting previously unselected package libxft2:arm64. Preparing to unpack .../100-libxft2_2.3.6-1+b2_arm64.deb ... Unpacking libxft2:arm64 (2.3.6-1+b2) ... Selecting previously unselected package x11-common. Preparing to unpack .../101-x11-common_1%3a7.7+23.1_all.deb ... Unpacking x11-common (1:7.7+23.1) ... Selecting previously unselected package libxss1:arm64. Preparing to unpack .../102-libxss1_1%3a1.2.3-1+b2_arm64.deb ... Unpacking libxss1:arm64 (1:1.2.3-1+b2) ... 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Setting up libjs-es5-shim (4.6.7-2) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-8) ... Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' Local time is now: Mon Dec 29 19:07:33 UTC 2025. Universal Time is now: Mon Dec 29 19:07:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... Setting up libpackage-stash-xs-perl:arm64 (0.30-1+b4) ... Setting up autotools-dev (20220109.1) ... Setting up libpcre2-32-0:arm64 (10.42-4+b2) ... Setting up libglib2.0-0t64:arm64 (2.82.2-2) ... No schema files found: doing nothing. Setting up libblas3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode Setting up libunbound8:arm64 (1.22.0-1) ... Setting up libpkgconf3:arm64 (1.8.1-4) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up libalgorithm-c3-perl (0.11-2) ... Setting up libjpeg62-turbo:arm64 (1:2.1.5-3+b1) ... Setting up libswitch-perl (2.17-3) ... Setting up libgnutls-dane0t64:arm64 (3.8.8-2) ... Setting up libx11-data (2:1.8.10-2) ... Setting up libjpeg62-turbo-dev:arm64 (1:2.1.5-3+b1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libncurses6:arm64 (6.5-2+b1) ... Setting up libfribidi0:arm64 (1.0.15-1) ... Setting up comerr-dev:arm64 (2.1-1.47.1-1+b1) ... Setting up libjs-d3 (3.5.17-4) ... Setting up fonts-dejavu-mono (2.37-8) ... Setting up libssl-dev:arm64 (3.3.2-2) ... Setting up libpng16-16t64:arm64 (1.6.44-2) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libtcl8.6:arm64 (8.6.15+dfsg-2) ... Setting up autopoint (0.22.5-2) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up icu-devtools (72.1-5+b1) ... Setting up fonts-dejavu-core (2.37-8) ... Setting up pkgconf-bin (1.8.1-4) ... Setting up libk5crypto3:arm64 (1.21.3-3) ... Setting up libidn2-dev:arm64 (2.3.7-2+b1) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-8) ... Setting up libgfortran5:arm64 (14.2.0-8) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.4.0-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libwebp7:arm64 (1.4.0-0.1+b1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up liblzma-dev:arm64 (5.6.3-1+b1) ... Setting up libsub-name-perl:arm64 (0.27-1+b3) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libnuma1:arm64 (2.0.18-1+b1) ... Setting up libpcre2-posix3:arm64 (10.42-4+b2) ... Setting up dwz (0.15-1+b1) ... Setting up libjs-highlight.js (9.18.5+dfsg1-2) ... Setting up sensible-utils (0.0.24) ... Setting up libtiff6:arm64 (4.5.1+git230720-5) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up libblosc1:arm64 (1.21.5+ds-1+b2) ... Setting up liblua5.4-0:arm64 (5.4.6-3+b2) ... Setting up libx11-6:arm64 (2:1.8.10-2) ... Setting up libthai-data (0.1.29-2) ... Setting up libdevel-globaldestruction-perl (0.14-4) ... Setting up node-bootstrap-sass (3.4.3-2) ... Setting up libngtcp2-16:arm64 (1.6.0-1) ... Setting up libjs-prettify (2015.12.04+dfsg-1.1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libkrb5-3:arm64 (1.21.3-3) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libjs-bootstrap4 (4.6.1+dfsg1-4) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up pandoc-data (3.1.11.1-3) ... Setting up libjs-jquery (3.6.1+dfsg+~3.5.14-1) ... Setting up libtasn1-6-dev:arm64 (4.19.0-3+b3) ... Setting up openssl (3.3.2-2) ... Setting up libdeflate-dev:arm64 (1.22-1) ... Setting up node-normalize.css (8.0.1-5) ... Setting up readline-common (8.2-5) ... Setting up libicu-dev:arm64 (72.1-5+b1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.2+b1) ... Setting up fonts-font-awesome (5.0.10+really4.7.0~dfsg-4.1) ... Setting up xdg-utils (1.1.3-4.1) ... update-alternatives: using /usr/bin/xdg-open to provide /usr/bin/open (open) in auto mode Setting up liburi-perl (5.30-1) ... Setting up libxmuu1:arm64 (2:1.1.3-3+b3) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b6) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.6.0-1) ... Setting up libp11-kit-dev:arm64 (0.25.5-2+b1) ... Setting up libblas-dev:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode Setting up libsz2:arm64 (1.1.3-1+b1) ... Setting up dctrl-tools (2.24-3+b1) ... Setting up libjs-bootstrap (3.4.1+dfsg-3) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libjs-jquery-selectize.js (0.12.6+dfsg-1.1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgfortran-14-dev:arm64 (14.2.0-8) ... Setting up libfile-stripnondeterminism-perl (1.14.0-1) ... Setting up libice6:arm64 (2:1.1.1-1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up liblapack3:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode Setting up libncurses-dev:arm64 (6.5-2+b1) ... Setting up gettext (0.22.5-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-2+b2) ... Setting up libpcre2-dev:arm64 (10.42-4+b2) ... Setting up nettle-dev:arm64 (3.10-1+b1) ... Setting up libxrender1:arm64 (1:0.9.10-1.1+b2) ... Setting up libtool (2.4.7-8) ... Setting up fontconfig-config (2.15.0-1.1+b1) ... Setting up libjs-twitter-bootstrap-datepicker (1.3.1+dfsg1-4.1) ... Setting up libpng-dev:arm64 (1.6.44-2) ... Setting up libaec-dev:arm64 (1.1.3-1+b1) ... Setting up libjpeg-dev:arm64 (1:2.1.5-3+b1) ... Setting up libxext6:arm64 (2:1.3.4-1+b2) ... Setting up libclass-c3-perl (0.35-2) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libldap-2.5-0:arm64 (2.5.18+dfsg-3+b1) ... Setting up libjs-jquery-datatables (1.11.5+dfsg-2) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:arm64 (0.1.29-2+b1) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libjs-jquery-ui (1.13.2+dfsg-1) ... Setting up pandoc (3.1.11.1+ds-2) ... Setting up libfreetype6:arm64 (2.13.3+dfsg-1) ... Setting up libldap-dev:arm64 (2.5.18+dfsg-3+b1) ... Setting up liblapack-dev:arm64 (3.12.0-3+b1) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode Setting up libgssapi-krb5-2:arm64 (1.21.3-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up ucf (3.0043+nmu1) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libreadline8t64:arm64 (8.2-5) ... Setting up dh-strip-nondeterminism (1.14.0-1) ... Setting up xauth (1:1.1.2-1+b1) ... Setting up groff-base (1.23.0-5) ... Setting up gfortran-14-aarch64-linux-gnu (14.2.0-8) ... Setting up libharfbuzz0b:arm64 (10.0.1-1) ... Setting up gfortran-aarch64-linux-gnu (4:14.2.0-1) ... Setting up libxss1:arm64 (1:1.2.3-1+b2) ... Setting up libfontconfig1:arm64 (2.15.0-1.1+b1) ... Setting up libmro-compat-perl (0.15-2) ... Setting up gfortran-14 (14.2.0-8) ... Setting up libsm6:arm64 (2:1.2.4-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libeval-closure-perl (0.14-3) ... Setting up libgnutls28-dev:arm64 (3.8.8-2) ... Setting up libpaper1:arm64 (1.1.29+b2) ... Creating config file /etc/papersize with new version Setting up libnghttp2-dev:arm64 (1.64.0-1) ... Setting up fontconfig (2.15.0-1.1+b1) ... Regenerating fonts cache... done. Setting up libxft2:arm64 (2.3.6-1+b2) ... Setting up libcurl4t64:arm64 (8.11.0-1) ... Setting up libtirpc3t64:arm64 (1.3.4+ds-1.3+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libtk8.6:arm64 (8.6.15-1) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libpango-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libcurl3t64-gnutls:arm64 (8.11.0-1) ... Setting up libwww-curl-perl:arm64 (4.17-11) ... Setting up libpaper-utils (1.1.29+b2) ... Setting up libreadline-dev:arm64 (8.2-5) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up gfortran (4:14.2.0-1) ... update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode Setting up libcairo2:arm64 (1.18.2-2) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1.3+b1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libgssrpc4t64:arm64 (1.21.3-3) ... Setting up libxt6t64:arm64 (1:1.2.1-1.2+b1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libdist-checkconflicts-perl (0.11-2) ... Setting up libpangoft2-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libhdf5-103-1t64:arm64 (1.10.10+repack-4) ... Setting up libpangocairo-1.0-0:arm64 (1.54.0+ds-3) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-3) ... Setting up libhdf5-hl-100t64:arm64 (1.10.10+repack-4) ... Setting up libkdb5-10t64:arm64 (1.21.3-3) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libhdf5-cpp-103-1t64:arm64 (1.10.10+repack-4) ... Setting up libhdf5-fortran-102t64:arm64 (1.10.10+repack-4) ... Setting up debhelper (13.20) ... Setting up libmodule-runtime-conflicts-perl (0.003-2) ... Setting up libclass-load-perl (0.25-2) ... Setting up r-base-core (4.4.2-1) ... Creating config file /etc/R/Renviron with new version Setting up r-cran-crayon (1.5.2-1) ... Setting up r-cran-labeling (0.4.3-1) ... Setting up r-cran-sourcetools (0.1.7-1-1+b1) ... Setting up r-cran-futile.options (1.0.1-3) ... Setting up r-cran-lattice (0.22-6-1+b1) ... Setting up r-cran-nlme (3.1.166-1) ... Setting up r-cran-farver (2.1.2-1+b1) ... Setting up r-cran-formatr (1.14-2) ... Setting up r-cran-xml (3.99-0.17-1+b1) ... Setting up libpackage-deprecationmanager-perl (0.18-1) ... Setting up r-cran-viridislite (0.4.2-2) ... Setting up r-cran-locfit (1.5-9.10-1) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-3) ... Setting up r-cran-statmod (1.5.0-1+b1) ... Setting up libdevel-overloadinfo-perl (0.007-1) ... Setting up libclass-load-xs-perl (0.10-2+b4) ... Setting up r-cran-commonmark (1.9.1-1) ... Setting up r-cran-rjson (0.2.23-1) ... Setting up r-cran-r6 (2.5.1-1) ... Setting up r-cran-pkgkitten (0.2.4-1) ... Setting up libhdf5-hl-cpp-100t64:arm64 (1.10.10+repack-4) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up r-cran-matrixcalc (1.0.6-2) ... Setting up r-cran-magrittr (2.0.3-1+b1) ... Setting up r-cran-rappdirs (0.3.3-1+b1) ... Setting up r-bioc-genomeinfodbdata (1.2.12-1) ... Setting up r-cran-evd (2.3-7.1-1) ... Setting up krb5-multidev:arm64 (1.21.3-3) ... Setting up r-cran-littler (0.3.20-1+b1) ... Setting up r-cran-permute (0.9-7-1) ... Setting up r-cran-bh (1.84.0-1) ... Setting up r-cran-fs (1.6.4+dfsg-1+b1) ... Setting up r-cran-rcpp (1.0.13-1-1) ... Setting up r-cran-curl (5.2.3+dfsg-1) ... Setting up r-cran-codetools (0.2-20-1) ... Setting up r-bioc-biocgenerics (0.50.0-2) ... Setting up r-cran-rlang (1.1.4-1+b1) ... Setting up r-cran-matrixstats (1.4.1-1) ... Setting up r-base-dev (4.4.2-1) ... Setting up littler (0.3.20-1) ... Setting up r-bioc-matrixgenerics (1.16.0-2) ... Setting up r-cran-xfun (0.49+dfsg-1) ... Setting up r-cran-sys (3.4.3-1) ... Setting up r-cran-plogr (0.2.0-3) ... Setting up r-cran-withr (3.0.2+dfsg-1) ... Setting up r-cran-mime (0.12-2+b1) ... Setting up libmoose-perl:arm64 (2.2207-1+b2) ... Setting up r-cran-base64enc (0.1-3-3+b1) ... Setting up r-cran-abind (1.4-8-1) ... Setting up r-cran-digest (0.6.37-1) ... Setting up r-cran-yaml (2.3.10-1) ... Setting up r-cran-lambda.r (1.2.4-2) ... Setting up r-cran-evaluate (1.0.0-1) ... Setting up r-cran-dbi (1.2.3-1) ... Setting up r-cran-highr (0.11+dfsg-1) ... Setting up r-cran-fansi (1.0.5-1+b1) ... Setting up r-cran-mass (7.3-61-1+b1) ... Setting up libhdf5-hl-fortran-100t64:arm64 (1.10.10+repack-4) ... Setting up r-cran-snow (1:0.4.4-2) ... Setting up r-cran-truncdist (1.0-2-4) ... Setting up r-cran-gtools (3.9.5-1+b1) ... Setting up r-cran-data.table (1.16.2+dfsg-1) ... Setting up r-cran-glue (1.7.0-1+b1) ... Setting up r-cran-bit (4.0.5-1+b1) ... Setting up r-cran-xtable (1:1.8-4-2) ... Setting up r-cran-cli (3.6.3-1) ... Setting up r-cran-lifecycle (1.0.4+dfsg-1) ... Setting up r-cran-bitops (1.0-8-1) ... Setting up r-cran-bit64 (4.0.5-1+b1) ... Setting up r-bioc-zlibbioc (1.50.0+dfsg-2) ... Setting up r-cran-askpass (1.2.1-1) ... Setting up r-cran-fastmap (1.2.0-1) ... Setting up r-cran-png (0.1-8-1+b2) ... Setting up r-cran-r.methodss3 (1.8.2-1) ... Setting up r-bioc-biobase (2.64.0-4) ... Setting up libkrb5-dev:arm64 (1.21.3-3) ... Setting up r-cran-jsonlite (1.8.9+dfsg-1) ... Setting up r-cran-mnormt (2.1.1-2+b1) ... Setting up r-cran-pkgconfig (2.0.3-2) ... Setting up r-cran-utf8 (1.2.4-1+b1) ... Setting up r-cran-colorspace (2.1-1+dfsg-1) ... Setting up libcurl4-openssl-dev:arm64 (8.11.0-1) ... Setting up r-cran-cpp11 (0.5.0-1) ... Setting up r-cran-rcolorbrewer (1.1-3-1) ... Setting up r-bioc-s4vectors (0.42.1+dfsg-2) ... Setting up r-cran-isoband (0.2.7-1+b1) ... Setting up r-cran-futile.logger (1.4.3-4) ... Setting up libhdf5-dev (1.10.10+repack-4) ... update-alternatives: using /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5-serial.pc to provide /usr/lib/aarch64-linux-gnu/pkgconfig/hdf5.pc (hdf5.pc) in auto mode Setting up libnamespace-clean-perl (0.27-2) ... Setting up r-bioc-limma (3.60.6+dfsg-1) ... Setting up r-cran-gtable (0.3.6+dfsg-1) ... Setting up r-cran-later (1.3.2+dfsg-1+b1) ... Setting up r-cran-matrix (1.7-1-1) ... Setting up r-cran-htmltools (0.5.8.1-1+b1) ... Setting up r-cran-tinytex (0.53-1) ... Setting up r-cran-kernsmooth (2.23-24-1+b1) ... Setting up r-cran-knitr (1.48+dfsg-1) ... Setting up r-cran-mgcv (1.9-1-1+b1) ... Setting up r-cran-cachem (1.1.0-1) ... Setting up r-cran-sass (0.4.9+dfsg-1+b1) ... Setting up r-bioc-iranges (2.38.1-1) ... Setting up r-cran-rcurl (1.98-1.16+dfsg-1) ... Setting up r-cran-restfulr (0.0.15-1+b1) ... Setting up r-bioc-sparsematrixstats (1.16.0+dfsg-1) ... Setting up r-cran-vctrs (0.6.5-1+b1) ... Setting up r-cran-pillar (1.9.0+dfsg-1) ... Setting up r-cran-openssl (2.2.0+dfsg-1+b1) ... Setting up r-bioc-s4arrays (1.4.1+dfsg-1) ... Setting up r-bioc-biocparallel (1.38.0-2) ... Setting up libwww-curl-simple-perl (0.100191-3) ... Setting up r-bioc-edger (4.2.2+dfsg-1) ... Setting up r-bioc-rhtslib (3.0.0+dfsg-1) ... Setting up r-cran-munsell (0.5.1-1) ... Setting up r-cran-tibble (3.2.1+dfsg-2+b1) ... Setting up r-bioc-rhdf5lib (1.26.0+dfsg-1) ... Setting up r-cran-fontawesome (0.5.2-1) ... Setting up r-cran-survival (3.7-0-1+b1) ... Setting up r-bioc-biocio (1.14.0+dfsg-1) ... Setting up r-cran-r.oo (1.26.0-1) ... Setting up r-bioc-rhdf5filters (1.16.0+dfsg-1) ... Setting up r-cran-jquerylib (0.1.4+dfsg-4) ... Setting up r-cran-psych (2.4.1-1) ... Setting up r-cran-httr (1.4.7+dfsg-1) ... Setting up r-cran-gridextra (2.3-3) ... Setting up r-cran-scales (1.3.0-1) ... Setting up r-cran-memoise (2.0.1-1) ... Setting up r-cran-promises (1.3.0+dfsg-1+b1) ... Setting up r-cran-blob (1.2.4-1) ... Setting up r-bioc-xvector (0.44.0-1) ... Setting up dh-r (20231212) ... Setting up r-cran-rsqlite (2.3.7-2+b1) ... Setting up r-cran-r.utils (2.12.3-1) ... Setting up r-bioc-ucsc.utils (1.0.0+ds-2) ... Setting up r-bioc-sparsearray (1.4.8+dfsg-1) ... Setting up r-cran-ggplot2 (3.5.1+dfsg-1) ... Setting up r-bioc-rhdf5 (2.48.0+dfsg-3) ... Setting up r-cran-httpuv (1.6.15+dfsg-1+b1) ... Setting up r-cran-viridis (0.6.5-1) ... Setting up r-bioc-genomeinfodb (1.40.1+dfsg-1) ... Setting up r-cran-bslib (0.7.0+dfsg-1) ... Setting up r-bioc-delayedarray (0.30.1+dfsg-1) ... Setting up r-bioc-hdf5array (1.32.1-1) ... Setting up r-cran-dendextend (1.18.1+dfsg-1) ... Setting up r-bioc-genomicranges (1.56.1+dfsg-1) ... Setting up r-bioc-biostrings (2.72.1+dfsg-1) ... Setting up r-bioc-delayedmatrixstats (1.26.0+ds-1) ... Setting up r-cran-shiny (1.9.1+dfsg-1) ... Setting up r-cran-rmarkdown (2.28+dfsg-1) ... Setting up r-bioc-beachmat (2.20.0+ds-1) ... Setting up r-bioc-rsamtools (2.20.0+dfsg-1) ... Setting up r-bioc-summarizedexperiment (1.34.0+dfsg-1) ... Setting up r-bioc-keggrest (1.44.1+dfsg-1) ... Setting up r-bioc-annotationdbi (1.66.0-1) ... Setting up r-bioc-annotate (1.82.0+dfsg-1) ... Setting up r-bioc-genefilter (1.86.0-1) ... Setting up r-bioc-genomicalignments (1.40.0-1) ... Setting up r-bioc-rtracklayer (1.64.0-1) ... Setting up r-bioc-sva (3.52.0-1) ... Setting up r-bioc-bsgenome (1.72.0-1) ... Setting up r-bioc-bsseq (1.40.0+dfsg-1) ... Setting up r-bioc-dss (2.52.0+dfsg-1) ... Processing triggers for libc-bin (2.40-3) ... Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/835071/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/835071/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-demixt_1.20.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-demixt dpkg-buildpackage: info: source version 1.20.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Michael R. Crusoe dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --buildsystem R dh_auto_clean -O--buildsystem=R dh_autoreconf_clean -O--buildsystem=R dh_clean -O--buildsystem=R debian/rules binary dh binary --buildsystem R dh_update_autotools_config -O--buildsystem=R dh_autoreconf -O--buildsystem=R dh_auto_configure -O--buildsystem=R dh_auto_build -O--buildsystem=R dh_auto_test -O--buildsystem=R create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=R dh_prep -O--buildsystem=R dh_auto_install --destdir=debian/r-bioc-demixt/ -O--buildsystem=R I: R Package: DeMixT Version: 1.20.0 I: Building using R version 4.4.2-1 I: R API version: r-api-4.0 I: Using built-time from d/changelog: Sun, 18 Aug 2024 12:51:40 +0200 mkdir -p /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library R CMD INSTALL -l /build/reproducible-path/r-bioc-demixt-1.20.0\+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library --clean . "--built-timestamp='Sun, 18 Aug 2024 12:51:40 +0200'" * installing *source* package 'DeMixT' ... ** using staged installation ** libs using C compiler: 'gcc (Debian 14.2.0-8) 14.2.0' using C++ compiler: 'g++ (Debian 14.2.0-8) 14.2.0' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c DeMixT.c -o DeMixT.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c Profile_2D.cpp -o Profile_2D.o g++ -std=gnu++17 -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c RcppExports.cpp -o RcppExports.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c init.c -o init.o gcc -I"/usr/share/R/include" -DNDEBUG -I'/usr/lib/R/site-library/Rcpp/include' -fopenmp -fPIC -g -O2 -ffile-prefix-map=/build/reproducible-path/r-base-4.4.2=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 -c registerDynamicSymbol.c -o registerDynamicSymbol.o g++ -std=gnu++17 -shared -L/usr/lib/R/lib -Wl,-z,relro -o DeMixT.so DeMixT.o Profile_2D.o RcppExports.o init.o registerDynamicSymbol.o -fopenmp -L/usr/lib/R/lib -lR make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/src' installing to /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/debian/r-bioc-demixt/usr/lib/R/site-library/00LOCK-r-bioc-demixt-1.20.0+dfsg/00new/DeMixT/libs ** R ** data *** moving datasets to lazyload DB ** inst ** byte-compile and prepare package for lazy loading Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** help *** installing help indices ** building package indices ** installing vignettes ** testing if installed package can be loaded from temporary location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** checking absolute paths in shared objects and dynamic libraries ** testing if installed package can be loaded from final location Warning: replacing previous import 'ggplot2::%+%' by 'psych::%+%' when loading 'DeMixT' Warning: replacing previous import 'SummarizedExperiment::distance' by 'psych::distance' when loading 'DeMixT' Warning: replacing previous import 'ggplot2::alpha' by 'psych::alpha' when loading 'DeMixT' ** testing if installed package keeps a record of temporary installation path * DONE (DeMixT) W: Ignoring specified R dependency: R (>= 3.6.0) I: Using r-cran-rcpp for Depends:Rcpp (>= 1.0.0) I: Using r-bioc-summarizedexperiment for Depends:SummarizedExperiment I: Using r-cran-knitr for Depends:knitr I: Using r-cran-kernsmooth for Depends:KernSmooth I: Using r-cran-matrixcalc for Depends:matrixcalc I: Using r-cran-rmarkdown for Depends:rmarkdown I: Using r-bioc-dss for Depends:DSS I: Using r-cran-dendextend for Depends:dendextend I: Using r-cran-psych for Depends:psych I: Using r-bioc-sva for Depends:sva I: Using r-cran-matrixstats for Imports:matrixStats I: Using r-cran-truncdist for Imports:truncdist I: Using r-cran-base64enc for Imports:base64enc I: Using r-cran-ggplot2 for Imports:ggplot2 I: Using r-cran-rcpp for LinkingTo:Rcpp I: BioConductor API version: r-api-bioc-3.19 I: Use r-bioc-demixt as Debian binary package for variables substitution dh_installdocs -O--buildsystem=R dh_installchangelogs -O--buildsystem=R dh_installsystemduser -O--buildsystem=R dh_perl -O--buildsystem=R dh_link -O--buildsystem=R dh_strip_nondeterminism -O--buildsystem=R dh_compress -O--buildsystem=R debian/rules override_dh_fixperms make[1]: Entering directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_fixperms chmod -x debian/r-bioc-demixt/usr/lib/R/site-library/DeMixT/doc/*.Rmd make[1]: Leaving directory '/build/reproducible-path/r-bioc-demixt-1.20.0+dfsg' dh_missing -O--buildsystem=R dh_dwz -a -O--buildsystem=R dh_strip -a -O--buildsystem=R dh_makeshlibs -a -O--buildsystem=R dh_shlibdeps -a -O--buildsystem=R dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb -O--buildsystem=R dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R dpkg-deb: building package 'r-bioc-demixt-dbgsym' in '../r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-demixt' in '../r-bioc-demixt_1.20.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/835071/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/835071/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/835071 and its subdirectories I: Current time: Tue Dec 30 09:08:51 +14 2025 I: pbuilder-time-stamp: 1767035331 + false + set +x Mon Dec 29 19:08:51 UTC 2025 I: Signing ./b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo as r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc Mon Dec 29 19:08:51 UTC 2025 I: Signed ./b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo as ./b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc Mon Dec 29 19:08:51 UTC 2025 - build #2 for r-bioc-demixt/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Mon Dec 29 19:08:51 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-z24axrhH, removing. /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2: total 176 drwxr-xr-x 2 jenkins jenkins 4096 Nov 26 12:43 b1 drwxr-xr-x 2 jenkins jenkins 4096 Nov 26 12:45 b2 -rw-r--r-- 1 jenkins jenkins 2366 Aug 18 10:56 r-bioc-demixt_1.20.0+dfsg-1.dsc -rw------- 1 jenkins jenkins 160155 Nov 26 12:43 rbuildlog.9ngTgOG /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1: total 3604 -rw-r--r-- 1 jenkins jenkins 156308 Nov 26 12:43 build.log -rw-r--r-- 1 jenkins jenkins 807892 Nov 26 12:43 r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3436 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2366 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 17472 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 18354 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1487 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2649956 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1309 Nov 26 12:43 r-bioc-demixt_1.20.0+dfsg-1_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2: total 3592 -rw-r--r-- 1 jenkins jenkins 158245 Nov 26 12:45 build.log -rw-r--r-- 1 jenkins jenkins 807892 Nov 26 12:45 r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 3436 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2366 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 17472 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 18354 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1487 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 2649956 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1309 Nov 26 12:45 r-bioc-demixt_1.20.0+dfsg-1_source.changes Tue Nov 26 12:45:53 UTC 2024 I: Deleting $TMPDIR on codethink03-arm64.debian.net. Tue Nov 26 12:45:53 UTC 2024 I: r-bioc-demixt_1.20.0+dfsg-1_arm64.changes: Format: 1.8 Date: Sun, 18 Aug 2024 12:51:40 +0200 Source: r-bioc-demixt Binary: r-bioc-demixt r-bioc-demixt-dbgsym Architecture: arm64 Version: 1.20.0+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian R Packages Maintainers Changed-By: Michael R. Crusoe Description: r-bioc-demixt - Cell type-specific deconvolution of heterogeneous tumor samples Changes: r-bioc-demixt (1.20.0+dfsg-1) unstable; urgency=medium . * Team upload. * Upload to unstable. Checksums-Sha1: ea3d9d91c8c915e3acf5f9940d6cdfa180c30994 807892 r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb 0ed246a72bc7d9d4de75f0a18db148d0431e4160 17472 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo 7b80671feba3be226da729c6d88b53ec2c1dc30b 2649956 r-bioc-demixt_1.20.0+dfsg-1_arm64.deb Checksums-Sha256: 5452bdd5cc96c30ddad81ff3ab81a575e8508e1ee2016d445471cf893bda6289 807892 r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb 2ddd61547928b2bbe322044b37e05f6bb81ecf2de72589ef1195ab845bf5fd5f 17472 r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo d06859d3258326dea3f3ffcee85a7e4ce415c171fbed5c503ab92adfa454d84a 2649956 r-bioc-demixt_1.20.0+dfsg-1_arm64.deb Files: 6103723b5ed6f41387b9e2412a809113 807892 debug optional r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb 27f09a0f9929cfa1a71bb46848a6a7e7 17472 gnu-r optional r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo 519952883285773f86058e1e63e9af0d 2649956 gnu-r optional r-bioc-demixt_1.20.0+dfsg-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2024-11-26 12:43:40.535054774 +0000 +++ b2/build.log 2024-11-26 12:45:52.869082536 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Nov 26 00:41:32 -12 2024 -I: pbuilder-time-stamp: 1732624892 +I: Current time: Tue Dec 30 09:06:45 +14 2025 +I: pbuilder-time-stamp: 1767035205 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -25,52 +25,84 @@ dpkg-source: info: unpacking r-bioc-demixt_1.20.0+dfsg-1.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D01_modify_environment starting +debug: Running on codethink03-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Dec 29 19:06 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="32" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.32(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='8280d7aa36c1440ca873e4e6fdf16969' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='832306' - PS1='# ' - PS2='> ' + INVOCATION_ID=6c224227bd9b46ec8b77fc176bb05002 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=835071 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_srky --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1 --logfile b1/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/pbuilderrc_h3oO --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2 --logfile b2/build.log r-bioc-demixt_1.20.0+dfsg-1.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink04-arm64 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-28-cloud-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 4 21:30 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/832306/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 4 2024 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -543,7 +575,7 @@ Get: 401 http://deb.debian.org/debian trixie/main arm64 r-cran-shiny all 1.9.1+dfsg-1 [3126 kB] Get: 402 http://deb.debian.org/debian trixie/main arm64 r-cran-rmarkdown all 2.28+dfsg-1 [1474 kB] Get: 403 http://deb.debian.org/debian trixie/main arm64 r-cran-truncdist all 1.0-2-4 [34.4 kB] -Fetched 334 MB in 2s (158 MB/s) +Fetched 334 MB in 1s (245 MB/s) debconf: delaying package configuration, since apt-utils is not installed Selecting previously unselected package tzdata. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20087 files and directories currently installed.) @@ -1832,8 +1864,8 @@ Setting up tzdata (2024b-3) ... Current default time zone: 'Etc/UTC' -Local time is now: Tue Nov 26 12:42:24 UTC 2024. -Universal Time is now: Tue Nov 26 12:42:24 UTC 2024. +Local time is now: Mon Dec 29 19:07:33 UTC 2025. +Universal Time is now: Mon Dec 29 19:07:33 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up zip (3.0-14+b1) ... @@ -2206,7 +2238,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../r-bioc-demixt_1.20.0+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/r-bioc-demixt-1.20.0+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../r-bioc-demixt_1.20.0+dfsg-1_source.changes dpkg-buildpackage: info: source package r-bioc-demixt dpkg-buildpackage: info: source version 1.20.0+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -2317,8 +2353,8 @@ dh_gencontrol -O--buildsystem=R dh_md5sums -O--buildsystem=R dh_builddeb -O--buildsystem=R -dpkg-deb: building package 'r-bioc-demixt' in '../r-bioc-demixt_1.20.0+dfsg-1_arm64.deb'. dpkg-deb: building package 'r-bioc-demixt-dbgsym' in '../r-bioc-demixt-dbgsym_1.20.0+dfsg-1_arm64.deb'. +dpkg-deb: building package 'r-bioc-demixt' in '../r-bioc-demixt_1.20.0+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../r-bioc-demixt_1.20.0+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -2326,12 +2362,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/835071/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/832306 and its subdirectories -I: Current time: Tue Nov 26 00:43:39 -12 2024 -I: pbuilder-time-stamp: 1732625019 +I: removing directory /srv/workspace/pbuilder/835071 and its subdirectories +I: Current time: Tue Dec 30 09:08:51 +14 2025 +I: pbuilder-time-stamp: 1767035331 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.diff: 67.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.diff.gz b2/build.log: 81.4% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.7% -- replaced with stdout Tue Nov 26 12:45:55 UTC 2024 I: diffoscope 283 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_r-bioc-demixt_trixie_arm64_1732625155 + touch /var/log/reproducible-builds/diffoscope_stamp_r-bioc-demixt_trixie_arm64_1732625155 + RESULT=0 + systemd-run '--description=diffoscope on r-bioc-demixt/1.20.0+dfsg-1 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_24-63366 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2 --run-session -c jenkins-reproducible-trixie-diffoscope-f5eb92f9-5766-48be-8025-257e6bb995d5 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/dbd-tmp-9899bJF ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_24-63366.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/r-bioc-demixt_1.20.0+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.1fGC7Ou2/b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call abc.DotChangesFile ## main (total time: 0.402s) 0.402s 2 calls outputs 0.000s 1 call cleanup ## recognizes (total time: 0.056s) 0.056s 12 calls diffoscope.comparators.binary.FilesystemFile ## specialize (total time: 0.000s) 0.000s 1 call specialize Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 725ms CPU time consumed: 724ms _ _ _ _ _ _ __ | |__ (_) ___ ___ __| | ___ _ __ ___ (_)_ _| |_ | '__|____| '_ \| |/ _ \ / __|____ / _` |/ _ \ '_ ` _ \| \ \/ / __| | | |_____| |_) | | (_) | (_|_____| (_| | __/ | | | | | |> <| |_ |_| |_.__/|_|\___/ \___| \__,_|\___|_| |_| |_|_/_/\_\\__| Tue Nov 26 12:45:56 UTC 2024 I: diffoscope 283 found no differences in the changes files, and a .buildinfo file also exists. Tue Nov 26 12:45:56 UTC 2024 I: r-bioc-demixt from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2024-11-26 12:45:56] INFO: Starting at 2024-11-26 12:45:56.867378 [2024-11-26 12:45:56] INFO: Generating the pages of 1 package(s) [2024-11-26 12:45:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:57] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/r-bioc-demixt didn't produce a buildlog, even though it has been built. [2024-11-26 12:45:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:57] INFO: Finished at 2024-11-26 12:45:57.253955, took: 0:00:00.386584 Tue Nov 26 12:45:57 UTC 2024 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/r-bioc-demixt.html Tue Nov 26 12:45:57 UTC 2024 I: Submitting .buildinfo files to external archives: Tue Nov 26 12:45:57 UTC 2024 I: Submitting 20K b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc https://buildinfo.debian.net/0ed246a72bc7d9d4de75f0a18db148d0431e4160/r-bioc-demixt_1.20.0+dfsg-1_arm64 Tue Nov 26 12:45:58 UTC 2024 I: Submitting 20K b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc https://buildinfo.debian.net/085353a3a10930a2792d60981fa59e5eebb4d989/r-bioc-demixt_1.20.0+dfsg-1_arm64 Tue Nov 26 12:45:59 UTC 2024 I: Done submitting .buildinfo files to http://buildinfo.debian.net/api/submit. Tue Nov 26 12:45:59 UTC 2024 I: Done submitting .buildinfo files. Tue Nov 26 12:45:59 UTC 2024 I: Removing signed r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc files: removed './b1/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc' removed './b2/r-bioc-demixt_1.20.0+dfsg-1_arm64.buildinfo.asc' 1732625159 arm64 trixie r-bioc-demixt Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.rbuild.log: 80.7% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/r-bioc-demixt_1.20.0+dfsg-1.rbuild.log.gz [2024-11-26 12:45:59] INFO: Starting at 2024-11-26 12:45:59.348680 [2024-11-26 12:45:59] INFO: Generating the pages of 1 package(s) [2024-11-26 12:45:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/i386/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/i386/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:59] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/i386/r-bioc-demixt_1.20.0+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/i386/r-bioc-demixt_1.20.0+dfsg-1.diff.gz is missing [2024-11-26 12:45:59] INFO: Finished at 2024-11-26 12:45:59.745024, took: 0:00:00.396351 All cleanup done. Tue Nov 26 12:45:59 UTC 2024 - total duration: 0h 4m 38s. Tue Nov 26 12:45:59 UTC 2024 - reproducible_build.sh stopped running as /tmp/jenkins-script-6BMHgBED, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 4min 41.231s CPU time consumed: 7.476s