Running as unit: rb-build-arm64_3-108729.service ==================================================================================== Thu Aug 7 04:33:56 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_3) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Thu Aug 7 04:33:56 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-0zt1JVb8" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 04:33:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Aug 7 04:33:56 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-zI7aZX' Thu Aug 7 04:33:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Aug 7 04:33:57 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-z4WsGm' ok, let's check if biomaj3-user is building anywhere yet… ok, biomaj3-user is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of biomaj3-user in trixie on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Aug 7 04:34:13 UTC 2025 I: starting to build biomaj3-user/trixie/arm64 on jenkins on '2025-08-07 04:33' Thu Aug 7 04:34:13 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/108729/console.log 1754541253 arm64 trixie biomaj3-user Thu Aug 7 04:34:13 UTC 2025 I: Downloading source for trixie/biomaj3-user=3.0.12-2 --2025-08-07 04:34:13-- http://deb.debian.org/debian/pool/main/b/biomaj3-user/biomaj3-user_3.0.12-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘biomaj3-user_3.0.12-2.dsc’ 0K .. 100% 271M=0s 2025-08-07 04:34:13 (271 MB/s) - ‘biomaj3-user_3.0.12-2.dsc’ saved [2221/2221] --2025-08-07 04:34:13-- http://deb.debian.org/debian/pool/main/b/biomaj3-user/biomaj3-user_3.0.12-2.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2221 (2.2K) [text/prs.lines.tag] Saving to: ‘biomaj3-user_3.0.12-2.dsc’ 0K .. 100% 271M=0s 2025-08-07 04:34:13 (271 MB/s) - ‘biomaj3-user_3.0.12-2.dsc’ saved [2221/2221] Thu Aug 7 04:34:13 UTC 2025 I: biomaj3-user_3.0.12-2.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: biomaj3-user Binary: python3-biomaj3-user Architecture: all Version: 3.0.12-2 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou Homepage: https://github.com/genouest/biomaj-user Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/biomaj3-user Vcs-Git: https://salsa.debian.org/med-team/biomaj3-user.git Testsuite: autopkgtest-pkg-python Build-Depends: debhelper-compat (= 13), dh-python, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-ldap3, python3-pymongo, python3-setuptools, python3-tabulate, python3-yaml, python3-biomaj3-core Package-List: python3-biomaj3-user deb python optional arch=all Checksums-Sha1: bcfa5caa88d3cb6cae8a054d0731747c85726f79 20212 biomaj3-user_3.0.12.orig.tar.xz 7e75e1ccfdef31fcf09e1b952f7aa4207f3092e8 13500 biomaj3-user_3.0.12-2.debian.tar.xz Checksums-Sha256: 15c09bf3d162ae538b23ec640a1c91487eba1d4b106a24004796e07012ee7400 20212 biomaj3-user_3.0.12.orig.tar.xz fcd7559818a15e077131e77fad0503821715f4b93b5d7c9da558ea30acf9b25f 13500 biomaj3-user_3.0.12-2.debian.tar.xz Files: 49f7e81bce0ec7f5c142b18d1295b0f5 20212 biomaj3-user_3.0.12.orig.tar.xz 161ebebb4fd49aebba5f3003ea3cfed7 13500 biomaj3-user_3.0.12-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEEj23hBDd/OxHnQXSHMfMURUShdBoFAmbkkJsRHHRjaGV0QGRl Ymlhbi5vcmcACgkQMfMURUShdBoQvw/9EmG73AuF/NSpdEO1TuCQHfQrOJS1Extr M0+p+wF5rvQb/7OQozYDTKDo/kU2jtr0mGveYFSafGGFUcnaJy1k+k2pTJ9QR7Nn 7jyS+NYiDWd96vUO/cgcxniHYU9VO3079Lo9f8/oL0UMEQhTlOzQKDqvElZRAC8z W1f49doRvCoPO1JiV/6NgIOQSuwidg3Vh5N7AGBYJh8qW0/nCkci2tpuF6x8nE3w HlZ3osnadPE5smOjUx9IQm2oo0r6aOUkcwAiOAo5WTesK7eOlNLy7UlBQdiPL0Uz 1mBXWcrNyeM5x6sgo3ljFd67YdFFtzskYhMCugfmUrUtBpk4ey1lr5tjhPABn7MK 3Q0SY0Avt4rukGRvcodrXDqTPlX5KQdgsy9d7XjeMuKQlkToGgTO3YUrFBYlkiaF I0lQfJw182g0bZLDR4/vkPbVTijgOsMMIMr/AOrkOeYnZ8NCnYljEKfSxO5kfRtd wrco7XjiXN4p2dAicVOJFxzYBj/RTBl/6Q3tdtVcFJkVx4lVpbgRHch6yR4xmUuz aIaSPklBcMPEYGNm3MBKYsC5VgCI6Caqfkc4TLmmfezYM8jrQsu6olFL217iuPyx NgqYV5dNtI2LdUlkcwIwcPxtbYdCKJRKUgkwW1O4yH/+fJUzVIfJaBYbydOTgu4K CsuP+T4mvw4= =V7gw -----END PGP SIGNATURE----- Thu Aug 7 04:34:13 UTC 2025 I: Checking whether the package is not for us Thu Aug 7 04:34:13 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Aug 7 04:34:13 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Aug 7 04:34:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Aug 7 04:34:13 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-FqVtr2' ==================================================================================== Wed Sep 9 10:57:14 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 biomaj3-user trixie /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV 3.0.12-2" as arguments. Wed Sep 9 10:57:14 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-aU5Vo43K" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Sep 9 10:57:14 UTC 2026 I: Downloading source for trixie/biomaj3-user=3.0.12-2 Reading package lists... NOTICE: 'biomaj3-user' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-user.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-user.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (dsc) [2221 B] Get:2 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (tar) [20.2 kB] Get:3 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (diff) [13.5 kB] Fetched 35.9 kB in 0s (1204 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-user' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-user.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-user.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (dsc) [2221 B] Get:2 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (tar) [20.2 kB] Get:3 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (diff) [13.5 kB] Fetched 35.9 kB in 0s (1204 kB/s) Download complete and in download only mode ============================================================================= Building biomaj3-user in trixie on arm64 on codethink03-arm64 now. Date: Wed Sep 9 11:57:15 BST 2026 Date UTC: Wed Sep 9 10:57:15 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 8 22:57:15 -12 2026 I: pbuilder-time-stamp: 1788951435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-user_3.0.12-2.dsc] I: copying [./biomaj3-user_3.0.12.orig.tar.xz] I: copying [./biomaj3-user_3.0.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-user_3.0.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-user in biomaj3-user-3.0.12 dpkg-source: info: unpacking biomaj3-user_3.0.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-user_3.0.12-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='4a19d24906a8490db8ddda5ecd944e46' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='613632' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_rJyV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1 --logfile b1/build.log biomaj3-user_3.0.12-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-ldap3, python3-pymongo, python3-setuptools, python3-tabulate, python3-yaml, python3-biomaj3-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-ldap3; however: Package python3-ldap3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pyasn1{a} python3-pymongo{a} python3-requests{a} python3-setuptools{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 99.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20250419 [162 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 22.7 MB in 0s (75.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... 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Selecting previously unselected package python3-ldap3. Preparing to unpack .../67-python3-ldap3_2.9.1-2_all.deb ... Unpacking python3-ldap3 (2.9.1-2) ... Selecting previously unselected package python3-pymongo. Preparing to unpack .../68-python3-pymongo_4.10.1-6_all.deb ... Unpacking python3-pymongo (4.10.1-6) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../69-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../70-python3-yaml_6.0.2-1+b2_arm64.deb ... Unpacking python3-yaml (6.0.2-1+b2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 9 10:57:49 UTC 2026. Universal Time is now: Wed Sep 9 10:57:49 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.5) ... Setting up openssl (3.5.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-user-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-user_3.0.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-user dpkg-buildpackage: info: source version 3.0.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user running egg_info creating biomaj_user.egg-info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt writing manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying bin/biomaj-users.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-users.py from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' echo "We can not test online code at build time." We can not test online code at build time. make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-user/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/biomaj_user_service.py to biomaj_user_service.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/user.py to user.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_user.egg-info to /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user-3.0.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-users.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin changing mode of /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin/biomaj-users.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-user/usr/bin/biomaj-users.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-user/usr/bin/biomaj-users.py I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-user: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-user: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-user' in '../python3-biomaj3-user_3.0.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-user_3.0.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-user_3.0.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/613632 and its subdirectories I: Current time: Tue Sep 8 22:58:56 -12 2026 I: pbuilder-time-stamp: 1788951536 Wed Sep 9 10:58:56 UTC 2026 I: Signing ./b1/biomaj3-user_3.0.12-2_arm64.buildinfo as biomaj3-user_3.0.12-2_arm64.buildinfo.asc Wed Sep 9 10:58:56 UTC 2026 I: Signed ./b1/biomaj3-user_3.0.12-2_arm64.buildinfo as ./b1/biomaj3-user_3.0.12-2_arm64.buildinfo.asc Wed Sep 9 10:58:56 UTC 2026 - build #1 for biomaj3-user/trixie/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Sep 9 10:58:56 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-aU5Vo43K, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 04:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 04:34 b2 -rw-r--r-- 1 jenkins jenkins 2221 Sep 13 2024 biomaj3-user_3.0.12-2.dsc -rw------- 1 jenkins jenkins 3367 Aug 7 04:34 rbuildlog.JsEgPCX /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1: total 116 -rw-r--r-- 1 jenkins jenkins 13500 Aug 7 04:35 biomaj3-user_3.0.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2221 Aug 7 04:35 biomaj3-user_3.0.12-2.dsc -rw-r--r-- 1 jenkins jenkins 6390 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7272 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1181 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1332 Aug 7 04:35 biomaj3-user_3.0.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 50184 Aug 7 04:35 build.log -rw-r--r-- 1 jenkins jenkins 19760 Aug 7 04:35 python3-biomaj3-user_3.0.12-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2: total 0 Thu Aug 7 04:35:57 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Tue Sep 8 22:57:15 -12 2026 I: pbuilder-time-stamp: 1788951435 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-user_3.0.12-2.dsc] I: copying [./biomaj3-user_3.0.12.orig.tar.xz] I: copying [./biomaj3-user_3.0.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-user_3.0.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-user in biomaj3-user-3.0.12 dpkg-source: info: unpacking biomaj3-user_3.0.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-user_3.0.12-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='trixie' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='4a19d24906a8490db8ddda5ecd944e46' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='613632' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_rJyV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1 --logfile b1/build.log biomaj3-user_3.0.12-2.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-ldap3, python3-pymongo, python3-setuptools, python3-tabulate, python3-yaml, python3-biomaj3-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-ldap3; however: Package python3-ldap3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pyasn1{a} python3-pymongo{a} python3-requests{a} python3-setuptools{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 99.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20250419 [162 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 22.7 MB in 0s (75.6 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_arm64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:arm64 (3.13.5-2) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20299 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_arm64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21314 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_arm64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.1-1_arm64.deb ... Unpacking openssl (3.5.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_arm64.deb ... 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Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Wed Sep 9 10:57:49 UTC 2026. Universal Time is now: Wed Sep 9 10:57:49 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.5) ... Setting up openssl (3.5.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/biomaj3-user-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-user_3.0.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-user dpkg-buildpackage: info: source version 3.0.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user running egg_info creating biomaj_user.egg-info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt writing manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying bin/biomaj-users.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-users.py from 644 to 755 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' echo "We can not test online code at build time." We can not test online code at build time. make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-user/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/biomaj_user_service.py to biomaj_user_service.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/user.py to user.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_user.egg-info to /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user-3.0.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-users.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin changing mode of /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin/biomaj-users.py to 755 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-user/usr/bin/biomaj-users.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-user/usr/bin/biomaj-users.py I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-user: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-user: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-user' in '../python3-biomaj3-user_3.0.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-user_3.0.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-user_3.0.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/613632 and its subdirectories I: Current time: Tue Sep 8 22:58:56 -12 2026 I: pbuilder-time-stamp: 1788951536 Thu Aug 7 04:35:57 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Aug 7 04:35:57 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Aug 7 04:35:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Aug 7 04:35:57 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Yj8Bzz' ==================================================================================== Thu Aug 7 04:35:59 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 biomaj3-user trixie /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV 3.0.12-2" as arguments. Thu Aug 7 04:35:59 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-gWGXhDPj" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Aug 7 04:35:59 UTC 2025 I: Downloading source for trixie/biomaj3-user=3.0.12-2 Reading package lists... NOTICE: 'biomaj3-user' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-user.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-user.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (dsc) [2221 B] Get:2 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (tar) [20.2 kB] Get:3 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (diff) [13.5 kB] Fetched 35.9 kB in 0s (2166 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'biomaj3-user' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/biomaj3-user.git Please use: git clone https://salsa.debian.org/med-team/biomaj3-user.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 35.9 kB of source archives. Get:1 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (dsc) [2221 B] Get:2 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (tar) [20.2 kB] Get:3 http://deb.debian.org/debian trixie/main biomaj3-user 3.0.12-2 (diff) [13.5 kB] Fetched 35.9 kB in 0s (2166 kB/s) Download complete and in download only mode ============================================================================= Re-Building biomaj3-user in trixie on arm64 on codethink04-arm64 now. Date: Thu Aug 7 05:35:59 BST 2025 Date UTC: Thu Aug 7 04:35:59 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_CAN9 + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' biomaj3-user = debian-installer -o biomaj3-user = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' biomaj3-user = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_CAN9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2 --logfile b2/build.log biomaj3-user_3.0.12-2.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Aug 7 18:35:59 +14 2025 I: pbuilder-time-stamp: 1754541359 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [biomaj3-user_3.0.12-2.dsc] I: copying [./biomaj3-user_3.0.12.orig.tar.xz] I: copying [./biomaj3-user_3.0.12-2.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./biomaj3-user_3.0.12-2.dsc: no acceptable signature found dpkg-source: info: extracting biomaj3-user in biomaj3-user-3.0.12 dpkg-source: info: unpacking biomaj3-user_3.0.12.orig.tar.xz dpkg-source: info: unpacking biomaj3-user_3.0.12-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Aug 7 04:36 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=trixie EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=0a6e3439ecac4a908c1290952d81777a LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1161569 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_CAN9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2 --logfile b2/build.log biomaj3-user_3.0.12-2.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), dh-python, python3-all, python3-bcrypt, python3-consul, python3-flask, python3-ldap3, python3-pymongo, python3-setuptools, python3-tabulate, python3-yaml, python3-biomaj3-core dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on dh-python; however: Package dh-python is not installed. pbuilder-satisfydepends-dummy depends on python3-all; however: Package python3-all is not installed. pbuilder-satisfydepends-dummy depends on python3-bcrypt; however: Package python3-bcrypt is not installed. pbuilder-satisfydepends-dummy depends on python3-consul; however: Package python3-consul is not installed. pbuilder-satisfydepends-dummy depends on python3-flask; however: Package python3-flask is not installed. pbuilder-satisfydepends-dummy depends on python3-ldap3; however: Package python3-ldap3 is not installed. pbuilder-satisfydepends-dummy depends on python3-pymongo; however: Package python3-pymongo is not installed. pbuilder-satisfydepends-dummy depends on python3-setuptools; however: Package python3-setuptools is not installed. pbuilder-satisfydepends-dummy depends on python3-tabulate; however: Package python3-tabulate is not installed. pbuilder-satisfydepends-dummy depends on python3-yaml; however: Package python3-yaml is not installed. pbuilder-satisfydepends-dummy depends on python3-biomaj3-core; however: Package python3-biomaj3-core is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} ca-certificates{a} debhelper{a} dh-autoreconf{a} dh-python{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} libyaml-0-2{a} m4{a} man-db{a} media-types{a} netbase{a} openssl{a} po-debconf{a} python3{a} python3-all{a} python3-autocommand{a} python3-bcrypt{a} python3-biomaj3-core{a} python3-blinker{a} python3-bson{a} python3-certifi{a} python3-chardet{a} python3-charset-normalizer{a} python3-click{a} python3-consul{a} python3-dnspython{a} python3-elastic-transport{a} python3-elasticsearch{a} python3-flask{a} python3-idna{a} python3-inflect{a} python3-itsdangerous{a} python3-jaraco.context{a} python3-jaraco.functools{a} python3-jaraco.text{a} python3-jinja2{a} python3-ldap3{a} python3-markupsafe{a} python3-minimal{a} python3-more-itertools{a} python3-pkg-resources{a} python3-pyasn1{a} python3-pymongo{a} python3-requests{a} python3-setuptools{a} python3-tabulate{a} python3-typeguard{a} python3-typing-extensions{a} python3-urllib3{a} python3-werkzeug{a} python3-yaml{a} python3-zipp{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx python3-asgiref python3-babel python3-bson-ext python3-cryptography python3-dotenv python3-gridfs python3-h2 python3-httpcore python3-httpx python3-openssl python3-pyinotify python3-pymongo-ext wget 0 packages upgraded, 84 newly installed, 0 to remove and 0 not upgraded. Need to get 22.7 MB of archives. After unpacking 99.6 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian trixie/main arm64 libexpat1 arm64 2.7.1-2 [93.3 kB] Get: 2 http://deb.debian.org/debian trixie/main arm64 libpython3.13-minimal arm64 3.13.5-2 [856 kB] Get: 3 http://deb.debian.org/debian trixie/main arm64 python3.13-minimal arm64 3.13.5-2 [2003 kB] Get: 4 http://deb.debian.org/debian trixie/main arm64 python3-minimal arm64 3.13.5-1 [27.2 kB] Get: 5 http://deb.debian.org/debian trixie/main arm64 media-types all 13.0.0 [29.3 kB] Get: 6 http://deb.debian.org/debian trixie/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian trixie/main arm64 tzdata all 2025b-4 [260 kB] Get: 8 http://deb.debian.org/debian trixie/main arm64 libffi8 arm64 3.4.8-2 [21.3 kB] Get: 9 http://deb.debian.org/debian trixie/main arm64 readline-common all 8.2-6 [69.4 kB] Get: 10 http://deb.debian.org/debian trixie/main arm64 libreadline8t64 arm64 8.2-6 [159 kB] Get: 11 http://deb.debian.org/debian trixie/main arm64 libpython3.13-stdlib arm64 3.13.5-2 [1892 kB] Get: 12 http://deb.debian.org/debian trixie/main arm64 python3.13 arm64 3.13.5-2 [757 kB] Get: 13 http://deb.debian.org/debian trixie/main arm64 libpython3-stdlib arm64 3.13.5-1 [10.2 kB] Get: 14 http://deb.debian.org/debian trixie/main arm64 python3 arm64 3.13.5-1 [28.2 kB] Get: 15 http://deb.debian.org/debian trixie/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 16 http://deb.debian.org/debian trixie/main arm64 openssl arm64 3.5.1-1 [1457 kB] Get: 17 http://deb.debian.org/debian trixie/main arm64 ca-certificates all 20250419 [162 kB] Get: 18 http://deb.debian.org/debian trixie/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian trixie/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian trixie/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian trixie/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 22 http://deb.debian.org/debian trixie/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 23 http://deb.debian.org/debian trixie/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian trixie/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 25 http://deb.debian.org/debian trixie/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian trixie/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian trixie/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 28 http://deb.debian.org/debian trixie/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian trixie/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian trixie/main arm64 automake all 1:1.17-4 [862 kB] Get: 31 http://deb.debian.org/debian trixie/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian trixie/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 33 http://deb.debian.org/debian trixie/main arm64 libtool all 2.5.4-4 [539 kB] Get: 34 http://deb.debian.org/debian trixie/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 35 http://deb.debian.org/debian trixie/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 36 http://deb.debian.org/debian trixie/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 37 http://deb.debian.org/debian trixie/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 38 http://deb.debian.org/debian trixie/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 39 http://deb.debian.org/debian trixie/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 40 http://deb.debian.org/debian trixie/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 41 http://deb.debian.org/debian trixie/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-2.1 [630 kB] Get: 42 http://deb.debian.org/debian trixie/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 43 http://deb.debian.org/debian trixie/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 44 http://deb.debian.org/debian trixie/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 45 http://deb.debian.org/debian trixie/main arm64 debhelper all 13.24.2 [919 kB] Get: 46 http://deb.debian.org/debian trixie/main arm64 dh-python all 6.20250414 [116 kB] Get: 47 http://deb.debian.org/debian trixie/main arm64 libyaml-0-2 arm64 0.2.5-2 [49.2 kB] Get: 48 http://deb.debian.org/debian trixie/main arm64 python3-all arm64 3.13.5-1 [1044 B] Get: 49 http://deb.debian.org/debian trixie/main arm64 python3-autocommand all 2.2.2-3 [13.6 kB] Get: 50 http://deb.debian.org/debian trixie/main arm64 python3-bcrypt arm64 4.2.0-2.1+b1 [188 kB] Get: 51 http://deb.debian.org/debian trixie/main arm64 python3-more-itertools all 10.7.0-1 [67.4 kB] Get: 52 http://deb.debian.org/debian trixie/main arm64 python3-typing-extensions all 4.13.2-1 [90.5 kB] Get: 53 http://deb.debian.org/debian trixie/main arm64 python3-typeguard all 4.4.2-1 [37.3 kB] Get: 54 http://deb.debian.org/debian trixie/main arm64 python3-inflect all 7.3.1-2 [32.4 kB] Get: 55 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.functools all 4.1.0-1 [12.0 kB] Get: 56 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.text all 4.0.0-1 [11.4 kB] Get: 57 http://deb.debian.org/debian trixie/main arm64 python3-zipp all 3.21.0-1 [10.6 kB] Get: 58 http://deb.debian.org/debian trixie/main arm64 python3-setuptools all 78.1.1-0.1 [738 kB] Get: 59 http://deb.debian.org/debian trixie/main arm64 python3-jaraco.context all 6.0.1-1 [8276 B] Get: 60 http://deb.debian.org/debian trixie/main arm64 python3-pkg-resources all 78.1.1-0.1 [224 kB] Get: 61 http://deb.debian.org/debian trixie/main arm64 python3-certifi all 2025.1.31+ds-1 [9652 B] Get: 62 http://deb.debian.org/debian trixie/main arm64 python3-urllib3 all 2.3.0-3 [115 kB] Get: 63 http://deb.debian.org/debian trixie/main arm64 python3-elastic-transport all 8.17.1-2 [37.0 kB] Get: 64 http://deb.debian.org/debian trixie/main arm64 python3-elasticsearch all 8.17.2-2 [223 kB] Get: 65 http://deb.debian.org/debian trixie/main arm64 python3-charset-normalizer arm64 3.4.2-1 [120 kB] Get: 66 http://deb.debian.org/debian trixie/main arm64 python3-idna all 3.10-1 [42.0 kB] Get: 67 http://deb.debian.org/debian trixie/main arm64 python3-chardet all 5.2.0+dfsg-2 [108 kB] Get: 68 http://deb.debian.org/debian trixie/main arm64 python3-requests all 2.32.3+dfsg-5 [72.2 kB] Get: 69 http://deb.debian.org/debian trixie/main arm64 python3-biomaj3-core all 3.0.28-4 [25.1 kB] Get: 70 http://deb.debian.org/debian trixie/main arm64 python3-blinker all 1.9.0-1 [12.6 kB] Get: 71 http://deb.debian.org/debian trixie/main arm64 python3-bson all 4.10.1-6 [87.2 kB] Get: 72 http://deb.debian.org/debian trixie/main arm64 python3-click all 8.2.0+0.really.8.1.8-1 [95.4 kB] Get: 73 http://deb.debian.org/debian trixie/main arm64 python3-consul all 1.5.5-1 [23.9 kB] Get: 74 http://deb.debian.org/debian trixie/main arm64 python3-dnspython all 2.7.0-1 [164 kB] Get: 75 http://deb.debian.org/debian trixie/main arm64 python3-itsdangerous all 2.2.0-2 [18.1 kB] Get: 76 http://deb.debian.org/debian trixie/main arm64 python3-markupsafe arm64 2.1.5-1+b4 [14.1 kB] Get: 77 http://deb.debian.org/debian trixie/main arm64 python3-jinja2 all 3.1.6-1 [107 kB] Get: 78 http://deb.debian.org/debian trixie/main arm64 python3-werkzeug all 3.1.3-2 [207 kB] Get: 79 http://deb.debian.org/debian trixie/main arm64 python3-flask all 3.1.1-1 [107 kB] Get: 80 http://deb.debian.org/debian trixie/main arm64 python3-pyasn1 all 0.6.1-1 [68.9 kB] Get: 81 http://deb.debian.org/debian trixie/main arm64 python3-ldap3 all 2.9.1-2 [235 kB] Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] Fetched 22.7 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.1-2_arm64.deb ... Unpacking libexpat1:arm64 (2.7.1-2) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.5-2_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.5-2_arm64.deb ... Unpacking python3.13-minimal (3.13.5-2) ... Setting up libpython3.13-minimal:arm64 (3.13.5-2) ... Setting up libexpat1:arm64 (2.7.1-2) ... Setting up python3.13-minimal (3.13.5-2) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20299 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.5-1_arm64.deb ... Unpacking python3-minimal (3.13.5-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_13.0.0_all.deb ... Unpacking media-types (13.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-4_all.deb ... Unpacking tzdata (2025b-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.4.8-2_arm64.deb ... Unpacking libffi8:arm64 (3.4.8-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.5-2_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.5-2) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.5-2_arm64.deb ... Unpacking python3.13 (3.13.5-2) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.5-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3-minimal (3.13.5-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21314 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.5-1_arm64.deb ... Unpacking python3 (3.13.5-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package openssl. Preparing to unpack .../02-openssl_3.5.1-1_arm64.deb ... Unpacking openssl (3.5.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../03-ca-certificates_20250419_all.deb ... Unpacking ca-certificates (20250419) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../18-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../19-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../20-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../21-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../22-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../23-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../24-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../25-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../26-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../27-libxml2_2.12.7+dfsg+really2.9.14-2.1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Selecting previously unselected package gettext. Preparing to unpack .../28-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../29-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../30-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../31-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package dh-python. Preparing to unpack .../32-dh-python_6.20250414_all.deb ... Unpacking dh-python (6.20250414) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../33-libyaml-0-2_0.2.5-2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-2) ... Selecting previously unselected package python3-all. Preparing to unpack .../34-python3-all_3.13.5-1_arm64.deb ... Unpacking python3-all (3.13.5-1) ... Selecting previously unselected package python3-autocommand. Preparing to unpack .../35-python3-autocommand_2.2.2-3_all.deb ... Unpacking python3-autocommand (2.2.2-3) ... Selecting previously unselected package python3-bcrypt. Preparing to unpack .../36-python3-bcrypt_4.2.0-2.1+b1_arm64.deb ... Unpacking python3-bcrypt (4.2.0-2.1+b1) ... Selecting previously unselected package python3-more-itertools. Preparing to unpack .../37-python3-more-itertools_10.7.0-1_all.deb ... Unpacking python3-more-itertools (10.7.0-1) ... Selecting previously unselected package python3-typing-extensions. Preparing to unpack .../38-python3-typing-extensions_4.13.2-1_all.deb ... Unpacking python3-typing-extensions (4.13.2-1) ... Selecting previously unselected package python3-typeguard. Preparing to unpack .../39-python3-typeguard_4.4.2-1_all.deb ... Unpacking python3-typeguard (4.4.2-1) ... Selecting previously unselected package python3-inflect. Preparing to unpack .../40-python3-inflect_7.3.1-2_all.deb ... Unpacking python3-inflect (7.3.1-2) ... Selecting previously unselected package python3-jaraco.functools. Preparing to unpack .../41-python3-jaraco.functools_4.1.0-1_all.deb ... Unpacking python3-jaraco.functools (4.1.0-1) ... Selecting previously unselected package python3-jaraco.text. Preparing to unpack .../42-python3-jaraco.text_4.0.0-1_all.deb ... Unpacking python3-jaraco.text (4.0.0-1) ... Selecting previously unselected package python3-zipp. Preparing to unpack .../43-python3-zipp_3.21.0-1_all.deb ... Unpacking python3-zipp (3.21.0-1) ... Selecting previously unselected package python3-setuptools. Preparing to unpack .../44-python3-setuptools_78.1.1-0.1_all.deb ... Unpacking python3-setuptools (78.1.1-0.1) ... Selecting previously unselected package python3-jaraco.context. Preparing to unpack .../45-python3-jaraco.context_6.0.1-1_all.deb ... Unpacking python3-jaraco.context (6.0.1-1) ... Selecting previously unselected package python3-pkg-resources. Preparing to unpack .../46-python3-pkg-resources_78.1.1-0.1_all.deb ... Unpacking python3-pkg-resources (78.1.1-0.1) ... Selecting previously unselected package python3-certifi. Preparing to unpack .../47-python3-certifi_2025.1.31+ds-1_all.deb ... Unpacking python3-certifi (2025.1.31+ds-1) ... Selecting previously unselected package python3-urllib3. Preparing to unpack .../48-python3-urllib3_2.3.0-3_all.deb ... Unpacking python3-urllib3 (2.3.0-3) ... Selecting previously unselected package python3-elastic-transport. Preparing to unpack .../49-python3-elastic-transport_8.17.1-2_all.deb ... Unpacking python3-elastic-transport (8.17.1-2) ... Selecting previously unselected package python3-elasticsearch. Preparing to unpack .../50-python3-elasticsearch_8.17.2-2_all.deb ... Unpacking python3-elasticsearch (8.17.2-2) ... Selecting previously unselected package python3-charset-normalizer. Preparing to unpack .../51-python3-charset-normalizer_3.4.2-1_arm64.deb ... Unpacking python3-charset-normalizer (3.4.2-1) ... Selecting previously unselected package python3-idna. Preparing to unpack .../52-python3-idna_3.10-1_all.deb ... Unpacking python3-idna (3.10-1) ... Selecting previously unselected package python3-chardet. Preparing to unpack .../53-python3-chardet_5.2.0+dfsg-2_all.deb ... Unpacking python3-chardet (5.2.0+dfsg-2) ... Selecting previously unselected package python3-requests. Preparing to unpack .../54-python3-requests_2.32.3+dfsg-5_all.deb ... Unpacking python3-requests (2.32.3+dfsg-5) ... Selecting previously unselected package python3-biomaj3-core. Preparing to unpack .../55-python3-biomaj3-core_3.0.28-4_all.deb ... Unpacking python3-biomaj3-core (3.0.28-4) ... Selecting previously unselected package python3-blinker. Preparing to unpack .../56-python3-blinker_1.9.0-1_all.deb ... Unpacking python3-blinker (1.9.0-1) ... Selecting previously unselected package python3-bson. Preparing to unpack .../57-python3-bson_4.10.1-6_all.deb ... Unpacking python3-bson (4.10.1-6) ... Selecting previously unselected package python3-click. Preparing to unpack .../58-python3-click_8.2.0+0.really.8.1.8-1_all.deb ... Unpacking python3-click (8.2.0+0.really.8.1.8-1) ... Selecting previously unselected package python3-consul. Preparing to unpack .../59-python3-consul_1.5.5-1_all.deb ... Unpacking python3-consul (1.5.5-1) ... Selecting previously unselected package python3-dnspython. Preparing to unpack .../60-python3-dnspython_2.7.0-1_all.deb ... Unpacking python3-dnspython (2.7.0-1) ... Selecting previously unselected package python3-itsdangerous. Preparing to unpack .../61-python3-itsdangerous_2.2.0-2_all.deb ... Unpacking python3-itsdangerous (2.2.0-2) ... Selecting previously unselected package python3-markupsafe. Preparing to unpack .../62-python3-markupsafe_2.1.5-1+b4_arm64.deb ... Unpacking python3-markupsafe (2.1.5-1+b4) ... Selecting previously unselected package python3-jinja2. Preparing to unpack .../63-python3-jinja2_3.1.6-1_all.deb ... Unpacking python3-jinja2 (3.1.6-1) ... Selecting previously unselected package python3-werkzeug. Preparing to unpack .../64-python3-werkzeug_3.1.3-2_all.deb ... Unpacking python3-werkzeug (3.1.3-2) ... Selecting previously unselected package python3-flask. Preparing to unpack .../65-python3-flask_3.1.1-1_all.deb ... Unpacking python3-flask (3.1.1-1) ... Selecting previously unselected package python3-pyasn1. Preparing to unpack .../66-python3-pyasn1_0.6.1-1_all.deb ... Unpacking python3-pyasn1 (0.6.1-1) ... Selecting previously unselected package python3-ldap3. Preparing to unpack .../67-python3-ldap3_2.9.1-2_all.deb ... Unpacking python3-ldap3 (2.9.1-2) ... Selecting previously unselected package python3-pymongo. Preparing to unpack .../68-python3-pymongo_4.10.1-6_all.deb ... Unpacking python3-pymongo (4.10.1-6) ... Selecting previously unselected package python3-tabulate. Preparing to unpack .../69-python3-tabulate_0.9.0-1_all.deb ... Unpacking python3-tabulate (0.9.0-1) ... Selecting previously unselected package python3-yaml. Preparing to unpack .../70-python3-yaml_6.0.2-1+b2_arm64.deb ... Unpacking python3-yaml (6.0.2-1+b2) ... Setting up media-types (13.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' Local time is now: Thu Aug 7 04:36:18 UTC 2025. Universal Time is now: Thu Aug 7 04:36:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up libffi8:arm64 (3.4.8-2) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up netbase (6.5) ... Setting up openssl (3.5.1-1) ... Setting up readline-common (8.2-6) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-2.1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 150 added, 0 removed; done. Setting up libreadline8t64:arm64 (8.2-6) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up libpython3.13-stdlib:arm64 (3.13.5-2) ... Setting up libpython3-stdlib:arm64 (3.13.5-1) ... Setting up python3.13 (3.13.5-2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.13.5-1) ... Setting up python3-zipp (3.21.0-1) ... Setting up python3-click (8.2.0+0.really.8.1.8-1) ... Setting up python3-autocommand (2.2.2-3) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up python3-markupsafe (2.1.5-1+b4) ... Setting up python3-bson (4.10.1-6) ... Setting up python3-jinja2 (3.1.6-1) ... Setting up python3-chardet (5.2.0+dfsg-2) ... Setting up python3-certifi (2025.1.31+ds-1) ... Setting up python3-werkzeug (3.1.3-2) ... Setting up python3-idna (3.10-1) ... Setting up python3-typing-extensions (4.13.2-1) ... Setting up python3-urllib3 (2.3.0-3) ... Setting up python3-dnspython (2.7.0-1) ... Setting up python3-pyasn1 (0.6.1-1) ... Setting up python3-pymongo (4.10.1-6) ... Setting up python3-blinker (1.9.0-1) ... Setting up dh-python (6.20250414) ... Setting up python3-more-itertools (10.7.0-1) ... Setting up python3-elastic-transport (8.17.1-2) ... Setting up python3-jaraco.functools (4.1.0-1) ... Setting up python3-jaraco.context (6.0.1-1) ... Setting up python3-charset-normalizer (3.4.2-1) ... Setting up python3-bcrypt (4.2.0-2.1+b1) ... Setting up python3-typeguard (4.4.2-1) ... Setting up python3-tabulate (0.9.0-1) ... Setting up python3-itsdangerous (2.2.0-2) ... Setting up python3-all (3.13.5-1) ... Setting up python3-yaml (6.0.2-1+b2) ... Setting up debhelper (13.24.2) ... Setting up python3-ldap3 (2.9.1-2) ... Setting up python3-inflect (7.3.1-2) ... Setting up python3-jaraco.text (4.0.0-1) ... Setting up python3-requests (2.32.3+dfsg-5) ... Setting up python3-consul (1.5.5-1) ... Setting up python3-pkg-resources (78.1.1-0.1) ... Setting up python3-elasticsearch (8.17.2-2) ... Setting up python3-setuptools (78.1.1-0.1) ... Setting up python3-flask (3.1.1-1) ... Setting up python3-biomaj3-core (3.0.28-4) ... Processing triggers for libc-bin (2.41-12) ... Processing triggers for ca-certificates (20250419) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for trixie I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/biomaj3-user-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-user_3.0.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-user dpkg-buildpackage: info: source version 3.0.12-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Alexandre Detiste dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean --with python3 --buildsystem=pybuild dh_auto_clean -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py clean /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running clean removing '/build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build' (and everything under it) 'build/bdist.linux-aarch64' does not exist -- can't clean it 'build/scripts-3.13' does not exist -- can't clean it dh_autoreconf_clean -O--buildsystem=pybuild dh_clean -O--buildsystem=pybuild debian/rules binary dh binary --with python3 --buildsystem=pybuild dh_update_autotools_config -O--buildsystem=pybuild dh_autoreconf -O--buildsystem=pybuild dh_auto_configure -O--buildsystem=pybuild I: pybuild base:311: python3.13 setup.py config /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running config dh_auto_build -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py build /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running build running build_py creating /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user copying biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user running egg_info creating biomaj_user.egg-info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt writing manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts creating build/scripts-3.13 copying bin/biomaj-users.py -> build/scripts-3.13 changing mode of build/scripts-3.13/biomaj-users.py from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' echo "We can not test online code at build time." We can not test online code at build time. make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' create-stamp debian/debhelper-build-stamp dh_testroot -O--buildsystem=pybuild dh_prep -O--buildsystem=pybuild dh_installdirs -O--buildsystem=pybuild dh_auto_install --destdir=debian/python3-biomaj3-user/ -O--buildsystem=pybuild I: pybuild base:311: /usr/bin/python3 setup.py install --root /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'tests_require' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/_distutils/dist.py:289: UserWarning: Unknown distribution option: 'test_suite' warnings.warn(msg) /usr/lib/python3/dist-packages/setuptools/dist.py:759: SetuptoolsDeprecationWarning: License classifiers are deprecated. !! ******************************************************************************** Please consider removing the following classifiers in favor of a SPDX license expression: License :: OSI Approved :: GNU Affero General Public License v3 or later (AGPLv3+) See https://packaging.python.org/en/latest/guides/writing-pyproject-toml/#license for details. ******************************************************************************** !! self._finalize_license_expression() running install /usr/lib/python3/dist-packages/setuptools/_distutils/cmd.py:90: SetuptoolsDeprecationWarning: setup.py install is deprecated. !! ******************************************************************************** Please avoid running ``setup.py`` directly. Instead, use pypa/build, pypa/installer or other standards-based tools. See https://blog.ganssle.io/articles/2021/10/setup-py-deprecated.html for details. ******************************************************************************** !! self.initialize_options() running build running build_py running egg_info writing biomaj_user.egg-info/PKG-INFO writing dependency_links to biomaj_user.egg-info/dependency_links.txt writing requirements to biomaj_user.egg-info/requires.txt writing top-level names to biomaj_user.egg-info/top_level.txt reading manifest file 'biomaj_user.egg-info/SOURCES.txt' reading manifest template 'MANIFEST.in' warning: no files found matching '*.txt' under directory 'biomaj_user' adding license file 'LICENSE' writing manifest file 'biomaj_user.egg-info/SOURCES.txt' running build_scripts running install_lib creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages creating /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/__init__.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/biomaj_user_service.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/user.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user copying /build/reproducible-path/biomaj3-user-3.0.12/.pybuild/cpython3_3.13_biomaj-user/build/biomaj_user/wsgi.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/__init__.py to __init__.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/biomaj_user_service.py to biomaj_user_service.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/user.py to user.cpython-313.pyc byte-compiling /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user/wsgi.py to wsgi.cpython-313.pyc running install_egg_info Copying biomaj_user.egg-info to /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/lib/python3.13/dist-packages/biomaj_user-3.0.12.egg-info Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-users.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin changing mode of /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin/biomaj-users.py to 775 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_install sed -i '1s;^;#!/usr/bin/python3\n;' debian/python3-biomaj3-user/usr/bin/biomaj-users.py make[1]: Leaving directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_installdocs -O--buildsystem=pybuild dh_installchangelogs -O--buildsystem=pybuild dh_python3 -O--buildsystem=pybuild I: dh_python3 tools:114: replacing shebang in debian/python3-biomaj3-user/usr/bin/biomaj-users.py I: dh_python3 pydist:316: Cannot find package that provides py_bcrypt. Please add package that provides it to Build-Depends or add "py_bcrypt python3-py-bcrypt" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. I: dh_python3 pydist:316: Cannot find package that provides python_consul. Please add package that provides it to Build-Depends or add "python_consul python3-consul" line to debian/py3dist-overrides or add proper dependency to Depends by hand and ignore this info. dh_installsystemduser -O--buildsystem=pybuild dh_lintian -O--buildsystem=pybuild dh_perl -O--buildsystem=pybuild dh_link -O--buildsystem=pybuild dh_strip_nondeterminism -O--buildsystem=pybuild dh_compress -O--buildsystem=pybuild dh_fixperms -O--buildsystem=pybuild dh_missing -O--buildsystem=pybuild dh_installdeb -O--buildsystem=pybuild dh_gencontrol -O--buildsystem=pybuild dpkg-gencontrol: warning: Recommends field of package python3-biomaj3-user: substitution variable ${python3:Recommends} used, but is not defined dpkg-gencontrol: warning: Suggests field of package python3-biomaj3-user: substitution variable ${python3:Suggests} used, but is not defined dh_md5sums -O--buildsystem=pybuild dh_builddeb -O--buildsystem=pybuild dpkg-deb: building package 'python3-biomaj3-user' in '../python3-biomaj3-user_3.0.12-2_all.deb'. dpkg-genbuildinfo --build=binary -O../biomaj3-user_3.0.12-2_arm64.buildinfo dpkg-genchanges --build=binary -O../biomaj3-user_3.0.12-2_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1161569 and its subdirectories I: Current time: Thu Aug 7 18:36:52 +14 2025 I: pbuilder-time-stamp: 1754541412 + false + set +x Thu Aug 7 04:36:52 UTC 2025 I: Signing ./b2/biomaj3-user_3.0.12-2_arm64.buildinfo as biomaj3-user_3.0.12-2_arm64.buildinfo.asc Thu Aug 7 04:36:52 UTC 2025 I: Signed ./b2/biomaj3-user_3.0.12-2_arm64.buildinfo as ./b2/biomaj3-user_3.0.12-2_arm64.buildinfo.asc Thu Aug 7 04:36:52 UTC 2025 - build #2 for biomaj3-user/trixie/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Aug 7 04:36:52 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-gWGXhDPj, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV: total 72 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 04:35 b1 drwxr-xr-x 2 jenkins jenkins 4096 Aug 7 04:36 b2 -rw-r--r-- 1 jenkins jenkins 2221 Sep 13 2024 biomaj3-user_3.0.12-2.dsc -rw------- 1 jenkins jenkins 53852 Aug 7 04:35 rbuildlog.JsEgPCX /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1: total 120 -rw-r--r-- 1 jenkins jenkins 13500 Aug 7 04:35 biomaj3-user_3.0.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2221 Aug 7 04:35 biomaj3-user_3.0.12-2.dsc -rw-r--r-- 1 jenkins jenkins 6390 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7272 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1181 Aug 7 04:35 biomaj3-user_3.0.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1332 Aug 7 04:35 biomaj3-user_3.0.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 50184 Aug 7 04:35 build.log -rw-r--r-- 1 jenkins jenkins 19760 Aug 7 04:35 python3-biomaj3-user_3.0.12-2_all.deb /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2: total 116 -rw-r--r-- 1 jenkins jenkins 13500 Aug 7 04:36 biomaj3-user_3.0.12-2.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2221 Aug 7 04:36 biomaj3-user_3.0.12-2.dsc -rw-r--r-- 1 jenkins jenkins 6390 Aug 7 04:36 biomaj3-user_3.0.12-2_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 7272 Aug 7 04:36 biomaj3-user_3.0.12-2_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1181 Aug 7 04:36 biomaj3-user_3.0.12-2_arm64.changes -rw-r--r-- 1 jenkins jenkins 1332 Aug 7 04:36 biomaj3-user_3.0.12-2_source.changes -rw-r--r-- 1 jenkins jenkins 52130 Aug 7 04:36 build.log -rw-r--r-- 1 jenkins jenkins 19760 Aug 7 04:36 python3-biomaj3-user_3.0.12-2_all.deb Thu Aug 7 04:36:53 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Aug 7 04:36:53 UTC 2025 I: biomaj3-user_3.0.12-2_arm64.changes: Format: 1.8 Date: Fri, 13 Sep 2024 21:12:13 +0200 Source: biomaj3-user Binary: python3-biomaj3-user Architecture: all Version: 3.0.12-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Alexandre Detiste Description: python3-biomaj3-user - BioMAJ user management library Closes: 1018322 Changes: biomaj3-user (3.0.12-2) unstable; urgency=medium . * Team upload. * Remove dependency on python3-nose, tests are disabled anyway (Closes: #1018322) Checksums-Sha1: e8e3ffed1b7953f02827d265627f8d8a6a2c1ca6 6390 biomaj3-user_3.0.12-2_arm64.buildinfo 54ede71b1e22aad375c821d597b83dc99a7aadf8 19760 python3-biomaj3-user_3.0.12-2_all.deb Checksums-Sha256: cee87386a482dee93978474a86ad0d92fcf5fc426808794fd488d993473d03fa 6390 biomaj3-user_3.0.12-2_arm64.buildinfo 0415c47851f717d5f00c583afa8bd0bd12e9a054bf1e24f60bf6bd7eaec64b98 19760 python3-biomaj3-user_3.0.12-2_all.deb Files: afd6a92872146020bb75bb5874578bb5 6390 python optional biomaj3-user_3.0.12-2_arm64.buildinfo 68ac209f68d4814352e257a0e8f0ecc0 19760 python optional python3-biomaj3-user_3.0.12-2_all.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/biomaj3-user_3.0.12-2.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/biomaj3-user_3.0.12-2.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/biomaj3-user_3.0.12-2.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/trixie/arm64/biomaj3-user_3.0.12-2.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/arm64/biomaj3-user_3.0.12-2_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/biomaj3-user_3.0.12-2.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-08-07 04:35:57.114633198 +0000 +++ b2/build.log 2025-08-07 04:36:53.174709199 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Tue Sep 8 22:57:15 -12 2026 -I: pbuilder-time-stamp: 1788951435 +I: Current time: Thu Aug 7 18:35:59 +14 2025 +I: pbuilder-time-stamp: 1754541359 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/trixie-reproducible-base.tgz] I: copying local configuration @@ -22,52 +22,84 @@ dpkg-source: info: unpacking biomaj3-user_3.0.12-2.debian.tar.xz I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Aug 7 04:36 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='trixie' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=trixie + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='4a19d24906a8490db8ddda5ecd944e46' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='613632' - PS1='# ' - PS2='> ' + INVOCATION_ID=0a6e3439ecac4a908c1290952d81777a + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1161569 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_rJyV --distribution trixie --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1 --logfile b1/build.log biomaj3-user_3.0.12-2.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/pbuilderrc_CAN9 --distribution trixie --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/trixie-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2 --logfile b2/build.log biomaj3-user_3.0.12-2.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/613632/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -209,7 +241,7 @@ Get: 82 http://deb.debian.org/debian trixie/main arm64 python3-pymongo all 4.10.1-6 [272 kB] Get: 83 http://deb.debian.org/debian trixie/main arm64 python3-tabulate all 0.9.0-1 [45.9 kB] Get: 84 http://deb.debian.org/debian trixie/main arm64 python3-yaml arm64 6.0.2-1+b2 [122 kB] -Fetched 22.7 MB in 0s (75.6 MB/s) +Fetched 22.7 MB in 0s (128 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19965 files and directories currently installed.) @@ -489,8 +521,8 @@ Setting up tzdata (2025b-4) ... Current default time zone: 'Etc/UTC' -Local time is now: Wed Sep 9 10:57:49 UTC 2026. -Universal Time is now: Wed Sep 9 10:57:49 UTC 2026. +Local time is now: Thu Aug 7 04:36:18 UTC 2025. +Universal Time is now: Thu Aug 7 04:36:18 UTC 2025. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... @@ -579,7 +611,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/biomaj3-user-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../biomaj3-user_3.0.12-2_source.changes +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for trixie +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/biomaj3-user-3.0.12/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../biomaj3-user_3.0.12-2_source.changes dpkg-buildpackage: info: source package biomaj3-user dpkg-buildpackage: info: source version 3.0.12-2 dpkg-buildpackage: info: source distribution unstable @@ -678,7 +714,7 @@ running build_scripts creating build/scripts-3.13 copying bin/biomaj-users.py -> build/scripts-3.13 -changing mode of build/scripts-3.13/biomaj-users.py from 644 to 755 +changing mode of build/scripts-3.13/biomaj-users.py from 664 to 775 debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' echo "We can not test online code at build time." @@ -750,7 +786,7 @@ Skipping SOURCES.txt running install_scripts copying build/scripts-3.13/biomaj-users.py -> /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin -changing mode of /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin/biomaj-users.py to 755 +changing mode of /build/reproducible-path/biomaj3-user-3.0.12/debian/python3-biomaj3-user/usr/bin/biomaj-users.py to 775 debian/rules override_dh_install make[1]: Entering directory '/build/reproducible-path/biomaj3-user-3.0.12' dh_install @@ -784,12 +820,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1161569/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/613632 and its subdirectories -I: Current time: Tue Sep 8 22:58:56 -12 2026 -I: pbuilder-time-stamp: 1788951536 +I: removing directory /srv/workspace/pbuilder/1161569 and its subdirectories +I: Current time: Thu Aug 7 18:36:52 +14 2025 +I: pbuilder-time-stamp: 1754541412 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/biomaj3-user_3.0.12-2.diff: 67.4% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/arm64/biomaj3-user_3.0.12-2.diff.gz b2/build.log: 81.0% -- replaced with stdout Compressing the 1st log... b1/build.log: 81.6% -- replaced with stdout Thu Aug 7 04:36:54 UTC 2025 I: diffoscope 303 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_biomaj3-user_trixie_arm64_1754541414 + touch /var/log/reproducible-builds/diffoscope_stamp_biomaj3-user_trixie_arm64_1754541414 + RESULT=0 + systemd-run '--description=diffoscope on biomaj3-user/3.0.12-2 in trixie/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_3-108729 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV --run-session -c jenkins-reproducible-trixie-diffoscope-8710472e-60c1-4eaa-abd4-239b5b741650 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/dbd-tmp-6bkc3YQ ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1/biomaj3-user_3.0.12-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2/biomaj3-user_3.0.12-2_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_3-108729.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/biomaj3-user_3.0.12-2.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b1/biomaj3-user_3.0.12-2_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6dhLynsV/b2/biomaj3-user_3.0.12-2_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 155ms CPU time consumed: 157ms _ _ _ _____ | |__ (_) ___ _ __ ___ __ _ (_)___ / _ _ ___ ___ _ __ | '_ \| |/ _ \| '_ ` _ \ / _` || | |_ \ _____| | | / __|/ _ \ '__| | |_) | | (_) | | | | | | (_| || |___) |_____| |_| \__ \ __/ | |_.__/|_|\___/|_| |_| |_|\__,_|/ |____/ \__,_|___/\___|_| |__/ Thu Aug 7 04:36:54 UTC 2025 I: diffoscope 303 found no differences in the changes files, and a .buildinfo file also exists. Thu Aug 7 04:36:54 UTC 2025 I: biomaj3-user from trixie built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-08-07 04:36:55] INFO: Starting at 2025-08-07 04:36:55.321874 [2025-08-07 04:36:55] INFO: Generating the pages of 1 package(s) [2025-08-07 04:36:55] CRITICAL: https://tests.reproducible-builds.org/debian/trixie/arm64/biomaj3-user didn't produce a buildlog, even though it has been built. [2025-08-07 04:36:55] INFO: Finished at 2025-08-07 04:36:55.535971, took: 0:00:00.214099 Thu Aug 7 04:36:55 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/trixie/arm64/biomaj3-user.html Thu Aug 7 04:36:55 UTC 2025 I: Removing signed biomaj3-user_3.0.12-2_arm64.buildinfo.asc files: removed './b1/biomaj3-user_3.0.12-2_arm64.buildinfo.asc' removed './b2/biomaj3-user_3.0.12-2_arm64.buildinfo.asc' 1754541415 arm64 trixie biomaj3-user Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/biomaj3-user_3.0.12-2.rbuild.log: 79.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/trixie/arm64/biomaj3-user_3.0.12-2.rbuild.log.gz [2025-08-07 04:36:55] INFO: Starting at 2025-08-07 04:36:55.787392 [2025-08-07 04:36:55] INFO: Generating the pages of 1 package(s) [2025-08-07 04:36:55] INFO: Finished at 2025-08-07 04:36:55.997961, took: 0:00:00.210574 All cleanup done. Thu Aug 7 04:36:56 UTC 2025 - total duration: 0h 2m 58s. Thu Aug 7 04:36:56 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-0zt1JVb8, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 2min 59.576s CPU time consumed: 4.363s