Running as unit: rb-build-arm64_3-121721.service; invocation ID: eb1ae85577864de0be22a1f90fa5a045 ==================================================================================== Fri Oct 31 19:42:09 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_3) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Fri Oct 31 19:42:09 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-eoz4svRv" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 19:42:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 19:42:09 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-MU33NI' Fri Oct 31 19:42:10 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 19:42:10 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-85VMLI' ok, let's check if probalign is building anywhere yet… ok, probalign is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of probalign in forky on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Fri Oct 31 19:42:17 UTC 2025 I: starting to build probalign/forky/arm64 on jenkins on '2025-10-31 19:42' Fri Oct 31 19:42:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/121721/console.log 1761939737 arm64 forky probalign Fri Oct 31 19:42:17 UTC 2025 I: Downloading source for forky/probalign=1.4-10 --2025-10-31 19:42:17-- http://deb.debian.org/debian/pool/main/p/probalign/probalign_1.4-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1971 (1.9K) [text/prs.lines.tag] Saving to: ‘probalign_1.4-10.dsc’ 0K . 100% 109M=0s 2025-10-31 19:42:17 (109 MB/s) - ‘probalign_1.4-10.dsc’ saved [1971/1971] --2025-10-31 19:42:17-- http://deb.debian.org/debian/pool/main/p/probalign/probalign_1.4-10.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 1971 (1.9K) [text/prs.lines.tag] Saving to: ‘probalign_1.4-10.dsc’ 0K . 100% 109M=0s 2025-10-31 19:42:17 (109 MB/s) - ‘probalign_1.4-10.dsc’ saved [1971/1971] Fri Oct 31 19:42:17 UTC 2025 I: probalign_1.4-10.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: probalign Binary: probalign Architecture: any Version: 1.4-10 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://web.njit.edu/~usman/probalign/ Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/med-team/probalign Vcs-Git: https://salsa.debian.org/med-team/probalign.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), help2man Package-List: probalign deb science optional arch=any Checksums-Sha1: b03b52e084da024780dfe051213c11e664592aeb 30060 probalign_1.4.orig.tar.gz a9bf04ea52818bfd737645c96f4235b813e15fad 4916 probalign_1.4-10.debian.tar.xz Checksums-Sha256: b221a27c5cbc3e5c707b0514c71301806074a2bf54047b57bd2d40497b663c29 30060 probalign_1.4.orig.tar.gz c28a26c9c36682e17dfd5da67b29058ba750b6d1dcb694003ee8cf52f141cfc3 4916 probalign_1.4-10.debian.tar.xz Files: 255d6ab775867a54d3727764b8dff561 30060 probalign_1.4.orig.tar.gz 37ad63fb22faa20345333dd9a2e6c6e6 4916 probalign_1.4-10.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmPJQxERHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtGh/w//d9nUAzZDMLKfSmVCj0MGGKCxs7AJiBYa 1r219oAiSyFT0vO+NlRu1bgMRdkrJ5K31KZP0riZQLhmwtdJCqet0ucvfaftaAzD SHeeigdFCijW7HMY7CjdVt8VW0jsV7TgonbGB9BPZjYr9gu/zZlmLnV6rL6IKGl/ QhXgVPP3akG11afV+yG+n4vb0hMd31sh/I1ZJz242DNhqYUHXsr2i1BBptTrji9i RMw/wMdrIBq2bU1Wilctum7Jk/FpxaqOWO93GhRQFyOaduO7ZS5zb6YSyQfUwIsy YIgW92NLd0+qGLzRyp8N8974a5wewydiMVQiyE5HFkT2OkOcf/pKeS0PML8F09p3 811Of+Pc/3YaVnn2EV8ypBJbKygyG94M9Oei9Msj9Wgr8c3OkagqEDCde27HCQAB DgUs8DktA9Zh9x3jysRLLMdFqM0cZu+BLNeDS8iCyD4KI9QqG39GbzEk1UfTF1z+ 50z40fIuPdLY+P+h+7Dl/kpvf0ynoFQYcpRSmerlk0U9tbUaRfeEYyvJ0AkId0dA sRa6RUUC3ElgqYnWCcbCUd+ukcSzhsEXIPAm+4PAZl4vGAaxbA812oAUrTuBSeNa /RbpPyho9Ly9Fe7LNheD54Mz0FUE1X4Nmxdwv+cDNL0dxN3LkxARneXO+CdnifvP lui2mPieYXA= =8del -----END PGP SIGNATURE----- Fri Oct 31 19:42:17 UTC 2025 I: Checking whether the package is not for us Fri Oct 31 19:42:17 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Fri Oct 31 19:42:17 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Fri Oct 31 19:42:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Fri Oct 31 19:42:17 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-wMLxOa' ==================================================================================== Fri Dec 4 02:05:18 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 probalign forky /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi 1.4-10" as arguments. Fri Dec 4 02:05:18 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-4JsQTKIk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 02:05:18 UTC 2026 I: Downloading source for forky/probalign=1.4-10 Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian forky/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian forky/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (552 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian forky/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian forky/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (552 kB/s) Download complete and in download only mode ============================================================================= Building probalign in forky on arm64 on codethink03-arm64 now. Date: Fri Dec 4 02:05:18 GMT 2026 Date UTC: Fri Dec 4 02:05:18 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 14:05:18 -12 2026 I: pbuilder-time-stamp: 1796349918 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7cb3a3a3417d45cb9f98347222bef785' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1449707' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_A3NO --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1 --logfile b1/build.log probalign_1.4-10.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 11.2 MB in 0s (52.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../25-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign' in '../probalign_1.4-10_arm64.deb'. dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_arm64.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1449707 and its subdirectories I: Current time: Thu Dec 3 14:05:55 -12 2026 I: pbuilder-time-stamp: 1796349955 Fri Dec 4 02:05:55 UTC 2026 I: Signing ./b1/probalign_1.4-10_arm64.buildinfo as probalign_1.4-10_arm64.buildinfo.asc Fri Dec 4 02:05:55 UTC 2026 I: Signed ./b1/probalign_1.4-10_arm64.buildinfo as ./b1/probalign_1.4-10_arm64.buildinfo.asc Fri Dec 4 02:05:55 UTC 2026 - build #1 for probalign/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 4 02:05:55 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-4JsQTKIk, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:42 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:42 b2 -rw-rw-r-- 1 jenkins jenkins 1971 Jan 19 2023 probalign_1.4-10.dsc -rw------- 1 jenkins jenkins 3084 Oct 31 19:42 rbuildlog.FcbHEs7 /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1: total 696 -rw-r--r-- 1 jenkins jenkins 26628 Oct 31 19:42 build.log -rw-r--r-- 1 jenkins jenkins 573204 Oct 31 19:42 probalign-dbgsym_1.4-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 4916 Oct 31 19:42 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Oct 31 19:42 probalign_1.4-10.dsc -rw-r--r-- 1 jenkins jenkins 4806 Oct 31 19:42 probalign_1.4-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5688 Oct 31 19:42 probalign_1.4-10_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1397 Oct 31 19:42 probalign_1.4-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 70176 Oct 31 19:42 probalign_1.4-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 1236 Oct 31 19:42 probalign_1.4-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2: total 0 Fri Oct 31 19:42:55 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Thu Dec 3 14:05:18 -12 2026 I: pbuilder-time-stamp: 1796349918 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='7cb3a3a3417d45cb9f98347222bef785' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1449707' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_A3NO --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1 --logfile b1/build.log probalign_1.4-10.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 11.2 MB in 0s (52.7 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... 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Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign' in '../probalign_1.4-10_arm64.deb'. dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_arm64.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1449707 and its subdirectories I: Current time: Thu Dec 3 14:05:55 -12 2026 I: pbuilder-time-stamp: 1796349955 Fri Oct 31 19:42:56 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Fri Oct 31 19:42:56 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Fri Oct 31 19:42:56 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Fri Oct 31 19:42:56 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-epG62I' ==================================================================================== Fri Oct 31 19:42:57 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 probalign forky /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi 1.4-10" as arguments. Fri Oct 31 19:42:57 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-gxvfJh2r" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Oct 31 19:42:57 UTC 2025 I: Downloading source for forky/probalign=1.4-10 Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian forky/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian forky/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (0 B/s) Download complete and in download only mode Reading package lists... NOTICE: 'probalign' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/probalign.git Please use: git clone https://salsa.debian.org/med-team/probalign.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 36.9 kB of source archives. Get:1 http://deb.debian.org/debian forky/main probalign 1.4-10 (dsc) [1971 B] Get:2 http://deb.debian.org/debian forky/main probalign 1.4-10 (tar) [30.1 kB] Get:3 http://deb.debian.org/debian forky/main probalign 1.4-10 (diff) [4916 B] Fetched 36.9 kB in 0s (0 B/s) Download complete and in download only mode ============================================================================= Re-Building probalign in forky on arm64 on codethink04-arm64 now. Date: Fri Oct 31 19:42:57 GMT 2025 Date UTC: Fri Oct 31 19:42:57 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_uXPO + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' probalign = debian-installer -o probalign = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' probalign = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_uXPO --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2 --logfile b2/build.log probalign_1.4-10.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sat Nov 1 09:42:57 +14 2025 I: pbuilder-time-stamp: 1761939777 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [probalign_1.4-10.dsc] I: copying [./probalign_1.4.orig.tar.gz] I: copying [./probalign_1.4-10.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./probalign_1.4-10.dsc: no acceptable signature found dpkg-source: info: extracting probalign in probalign-1.4 dpkg-source: info: unpacking probalign_1.4.orig.tar.gz dpkg-source: info: unpacking probalign_1.4-10.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc_fixes.patch dpkg-source: info: applying fix-gcc-4.6.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Oct 31 19:43 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=dd1e640046014f5da14cb8d9e4157543 LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1537474 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_uXPO --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2 --logfile b2/build.log probalign_1.4-10.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), help2man dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on help2man; however: Package help2man is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} help2man{a} intltool-debian{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} liblocale-gettext-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2-16{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 31 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.7 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 liblocale-gettext-perl arm64 1.07-7+b1 [15.2 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 23 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 24 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 help2man arm64 1.49.3+b1 [198 kB] Fetched 11.2 MB in 0s (96.6 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-7+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../03-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../06-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../07-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../08-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../09-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../10-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../11-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../12-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../13-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../14-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../15-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../16-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../17-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../18-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../19-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../20-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../21-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../22-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../23-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../24-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../25-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../26-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../27-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../28-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../29-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package help2man. Preparing to unpack .../30-help2man_1.49.3+b1_arm64.deb ... Unpacking help2man (1.49.3+b1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Setting up libdebhelper-perl (13.28) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.193-3) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up liblocale-gettext-perl (1.07-7+b1) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up help2man (1.49.3+b1) ... Setting up dh-autoreconf (21) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.28) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/probalign-1.4' rm -f probalign make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 INSTALL="install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/probalign-1.4' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/probalign-1.4=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O3 -W -Wall -funroll-loops -lm -o probalign Main.cc PostProbs.cc ComputeAlignment.cc ReadMatrix.cc -Wl,-z,relro -Wl,-z,now In file included from MultiSequence.h:18, from Main.cc:9: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from Main.cc:8: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:312:17: warning: variable 'zz' set but not used [-Wunused-but-set-variable] 312 | long double zz = 0; | ^~ PostProbs.cc: In function 'VF* ComputePostProbs(int, int, std::string, std::string)': PostProbs.cc:892:9: warning: variable 'stock_loop' set but not used [-Wunused-but-set-variable] 892 | int stock_loop = 1; | ^~~~~~~~~~ PostProbs.cc: In function 'VF* revers_partf(long double**, float, float, float)': PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc:508:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 508 | delete(Zf); | ^ PostProbs.cc:180:33: note: returned from 'void* operator new [](std::size_t)' 180 | Zf = new long double *[2]; | ^ PostProbs.cc:511:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 511 | delete(Ze); | ^ PostProbs.cc:179:33: note: returned from 'void* operator new [](std::size_t)' 179 | Ze = new long double *[2]; | ^ PostProbs.cc:515:18: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 515 | delete(Zm); | ^ PostProbs.cc:178:33: note: returned from 'void* operator new [](std::size_t)' 178 | Zm = new long double *[2]; | ^ PostProbs.cc: In function 'long double** partf(float, float, float)': PostProbs.cc:871:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 871 | delete(Zf[0]); | ^ PostProbs.cc:590:56: note: returned from 'void* operator new [](std::size_t)' 590 | Zf[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:872:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 872 | delete(Ze[0]); | ^ PostProbs.cc:589:56: note: returned from 'void* operator new [](std::size_t)' 589 | Ze[0] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:873:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 873 | delete(Zf[1]); | ^ PostProbs.cc:592:56: note: returned from 'void* operator new [](std::size_t)' 592 | Zf[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:874:21: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 874 | delete(Ze[1]); | ^ PostProbs.cc:591:56: note: returned from 'void* operator new [](std::size_t)' 591 | Ze[1] = new long double[sequences[0].length + 1]; | ^ PostProbs.cc:877:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 877 | delete(Zf); | ^ PostProbs.cc:584:33: note: returned from 'void* operator new [](std::size_t)' 584 | Zf = new long double *[2]; | ^ PostProbs.cc:878:14: warning: 'void operator delete(void*, std::size_t)' called on pointer returned from a mismatched allocation function [-Wmismatched-new-delete] 878 | delete(Ze); | ^ PostProbs.cc:583:33: note: returned from 'void* operator new [](std::size_t)' 583 | Ze = new long double *[2]; | ^ In file included from MultiSequence.h:18, from ComputeAlignment.cc:12: Sequence.h: In member function 'Sequence* Sequence::Clone() const': Sequence.h:293:21: warning: implicitly-declared 'SafeVector& SafeVector::operator=(const SafeVector&)' is deprecated [-Wdeprecated-copy] 293 | *(ret->data) = *data; | ^~~~ In file included from ComputeAlignment.cc:10: SafeVector.h:29:3: note: because 'SafeVector' has user-provided 'SafeVector::SafeVector(const SafeVector&) [with TYPE = char]' 29 | SafeVector (const SafeVector &source) : std::vector(source) {} | ^~~~~~~~~~ ReadMatrix.cc: In function 'void read_matrix(score_matrix)': ReadMatrix.cc:100:10: warning: storing the address of local variable 'matrx' in 'bases' [-Wdangling-pointer=] 100 | bases=(char *)matrx.monomers; | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ ReadMatrix.cc:96:38: note: 'matrx' declared here 96 | inline void read_matrix(score_matrix matrx) | ~~~~~~~~~~~~~^~~~~ ReadMatrix.cc:19:23: note: 'bases' declared here 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs debian/rules override_dh_auto_install make[1]: Entering directory '/build/reproducible-path/probalign-1.4' help2man --name="Align sequences in MFAFILE(s) and print result to standard output" \ --no-discard-stderr \ --version-string=1.4 \ --help-option=" " \ --no-info \ /build/reproducible-path/probalign-1.4/probalign > /build/reproducible-path/probalign-1.4/debian/probalign/usr/share/man/man1/probalign.1 make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_arm64.deb'. dpkg-deb: building package 'probalign' in '../probalign_1.4-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_arm64.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1537474 and its subdirectories I: Current time: Sat Nov 1 09:43:36 +14 2025 I: pbuilder-time-stamp: 1761939816 + false + set +x Fri Oct 31 19:43:36 UTC 2025 I: Signing ./b2/probalign_1.4-10_arm64.buildinfo as probalign_1.4-10_arm64.buildinfo.asc Fri Oct 31 19:43:37 UTC 2025 I: Signed ./b2/probalign_1.4-10_arm64.buildinfo as ./b2/probalign_1.4-10_arm64.buildinfo.asc Fri Oct 31 19:43:37 UTC 2025 - build #2 for probalign/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Fri Oct 31 19:43:37 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-gxvfJh2r, removing. /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi: total 44 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:42 b1 drwxrwxr-x 2 jenkins jenkins 4096 Oct 31 19:43 b2 -rw-rw-r-- 1 jenkins jenkins 1971 Jan 19 2023 probalign_1.4-10.dsc -rw------- 1 jenkins jenkins 30013 Oct 31 19:42 rbuildlog.FcbHEs7 /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1: total 704 -rw-r--r-- 1 jenkins jenkins 26628 Oct 31 19:42 build.log -rw-r--r-- 1 jenkins jenkins 573204 Oct 31 19:42 probalign-dbgsym_1.4-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 4916 Oct 31 19:42 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Oct 31 19:42 probalign_1.4-10.dsc -rw-r--r-- 1 jenkins jenkins 4806 Oct 31 19:42 probalign_1.4-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5688 Oct 31 19:42 probalign_1.4-10_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1397 Oct 31 19:42 probalign_1.4-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 70176 Oct 31 19:42 probalign_1.4-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 1236 Oct 31 19:42 probalign_1.4-10_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2: total 696 -rw-rw-r-- 1 jenkins jenkins 28653 Oct 31 19:43 build.log -rw-r--r-- 1 jenkins jenkins 573204 Oct 31 19:43 probalign-dbgsym_1.4-10_arm64.deb -rw-r--r-- 1 jenkins jenkins 4916 Oct 31 19:43 probalign_1.4-10.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 1971 Oct 31 19:43 probalign_1.4-10.dsc -rw-rw-r-- 1 jenkins jenkins 4814 Oct 31 19:43 probalign_1.4-10_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 5696 Oct 31 19:43 probalign_1.4-10_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1397 Oct 31 19:43 probalign_1.4-10_arm64.changes -rw-r--r-- 1 jenkins jenkins 70176 Oct 31 19:43 probalign_1.4-10_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1236 Oct 31 19:43 probalign_1.4-10_source.changes Fri Oct 31 19:43:37 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Fri Oct 31 19:43:38 UTC 2025 I: probalign_1.4-10_arm64.changes: Format: 1.8 Date: Thu, 19 Jan 2023 14:15:16 +0100 Source: probalign Binary: probalign probalign-dbgsym Architecture: arm64 Version: 1.4-10 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: probalign - multiple sequence alignment using partition function posterior pr Changes: probalign (1.4-10) unstable; urgency=medium . * Fix Homepage and download location * Standards-Version: 4.6.2 (routine-update) Checksums-Sha1: b66ab7b4b2e017ed2d038de37ee67bb58683dc47 573204 probalign-dbgsym_1.4-10_arm64.deb 040b7b3983c7555652a6357d92bd8e31a36b053a 4806 probalign_1.4-10_arm64.buildinfo 527ac758608c41a6b1cacc98e947a5a5ca47d680 70176 probalign_1.4-10_arm64.deb Checksums-Sha256: c9db326edb1a732ea52f01434f1f68f92d123621ac51879010cb932dbf322ad6 573204 probalign-dbgsym_1.4-10_arm64.deb c6e8e4067010405226d895abc3ce2bb7c6ee08db67b28369ecaeab89f6c3a32e 4806 probalign_1.4-10_arm64.buildinfo f527ae452fbc2d9d1cdd20a495a7e899f088771e213941542776d0ee90ae9ea1 70176 probalign_1.4-10_arm64.deb Files: d014b1cb916b683d6718d1b50e6af699 573204 debug optional probalign-dbgsym_1.4-10_arm64.deb d4f2d72fa9565db2926d1c5e3770c2a5 4806 science optional probalign_1.4-10_arm64.buildinfo b81dd095a01e3d08af13e2c0cb9b9c4d 70176 science optional probalign_1.4-10_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/probalign_1.4-10.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/probalign_1.4-10.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/probalign_1.4-10.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/probalign_1.4-10.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/probalign_1.4-10_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/probalign_1.4-10.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-10-31 19:42:55.784648850 +0000 +++ b2/build.log 2025-10-31 19:43:37.688701586 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Thu Dec 3 14:05:18 -12 2026 -I: pbuilder-time-stamp: 1796349918 +I: Current time: Sat Nov 1 09:42:57 +14 2025 +I: pbuilder-time-stamp: 1761939777 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying mayhem.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Oct 31 19:43 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='7cb3a3a3417d45cb9f98347222bef785' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1449707' - PS1='# ' - PS2='> ' + INVOCATION_ID=dd1e640046014f5da14cb8d9e4157543 + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1537474 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_A3NO --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1 --logfile b1/build.log probalign_1.4-10.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/pbuilderrc_uXPO --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2 --logfile b2/build.log probalign_1.4-10.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1449707/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -142,7 +174,7 @@ Get: 29 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 help2man arm64 1.49.3+b1 [198 kB] -Fetched 11.2 MB in 0s (52.7 MB/s) +Fetched 11.2 MB in 0s (96.6 MB/s) Preconfiguring packages ... Selecting previously unselected package liblocale-gettext-perl. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) @@ -281,7 +313,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/probalign-1.4/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../probalign_1.4-10_source.changes dpkg-buildpackage: info: source package probalign dpkg-buildpackage: info: source version 1.4-10 dpkg-buildpackage: info: source distribution unstable @@ -418,7 +454,7 @@ 19 | extern char *aminos, *bases, matrixtype[20]; | ^~~~~ make[1]: Leaving directory '/build/reproducible-path/probalign-1.4' - dh_auto_test +dh: command-omitted: The call to "dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep dh_installdirs @@ -453,8 +489,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'probalign' in '../probalign_1.4-10_arm64.deb'. dpkg-deb: building package 'probalign-dbgsym' in '../probalign-dbgsym_1.4-10_arm64.deb'. +dpkg-deb: building package 'probalign' in '../probalign_1.4-10_arm64.deb'. dpkg-genbuildinfo --build=binary -O../probalign_1.4-10_arm64.buildinfo dpkg-genchanges --build=binary -O../probalign_1.4-10_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -462,12 +498,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1537474/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1449707 and its subdirectories -I: Current time: Thu Dec 3 14:05:55 -12 2026 -I: pbuilder-time-stamp: 1796349955 +I: removing directory /srv/workspace/pbuilder/1537474 and its subdirectories +I: Current time: Sat Nov 1 09:43:36 +14 2025 +I: pbuilder-time-stamp: 1761939816 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/probalign_1.4-10.diff: 67.0% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/probalign_1.4-10.diff.gz b2/build.log: 76.5% -- replaced with stdout Compressing the 1st log... b1/build.log: 77.4% -- replaced with stdout Fri Oct 31 19:43:38 UTC 2025 I: diffoscope 306 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_probalign_forky_arm64_1761939818 + touch /var/log/reproducible-builds/diffoscope_stamp_probalign_forky_arm64_1761939818 + RESULT=0 + systemd-run '--description=diffoscope on probalign/1.4-10 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_3-121721 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi --run-session -c jenkins-reproducible-forky-diffoscope-9efdee22-733e-4ec4-a175-ecb7193734ea -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/dbd-tmp-p10wwij ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1/probalign_1.4-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2/probalign_1.4-10_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_3-121721.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/probalign_1.4-10.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b1/probalign_1.4-10_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.6BUpmrvi/b2/probalign_1.4-10_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 215ms CPU time consumed: 179ms Memory peak: 17.7M (swap: 0B) _ _ _ _ __ _ __ ___ | |__ __ _| (_) __ _ _ __ | '_ \| '__/ _ \| '_ \ / _` | | |/ _` | '_ \ | |_) | | | (_) | |_) | (_| | | | (_| | | | | | .__/|_| \___/|_.__/ \__,_|_|_|\__, |_| |_| |_| |___/ Fri Oct 31 19:43:39 UTC 2025 I: diffoscope 306 found no differences in the changes files, and a .buildinfo file also exists. Fri Oct 31 19:43:39 UTC 2025 I: probalign from forky built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-10-31 19:43:39] INFO: Starting at 2025-10-31 19:43:39.818515 [2025-10-31 19:43:39] INFO: Generating the pages of 1 package(s) [2025-10-31 19:43:40] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/probalign didn't produce a buildlog, even though it has been built. [2025-10-31 19:43:40] INFO: Finished at 2025-10-31 19:43:40.133248, took: 0:00:00.314739 Fri Oct 31 19:43:40 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/probalign.html Fri Oct 31 19:43:40 UTC 2025 I: Removing signed probalign_1.4-10_arm64.buildinfo.asc files: removed './b1/probalign_1.4-10_arm64.buildinfo.asc' removed './b2/probalign_1.4-10_arm64.buildinfo.asc' 1761939820 arm64 forky probalign Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/probalign_1.4-10.rbuild.log: 73.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/probalign_1.4-10.rbuild.log.gz [2025-10-31 19:43:40] INFO: Starting at 2025-10-31 19:43:40.505905 [2025-10-31 19:43:40] INFO: Generating the pages of 1 package(s) [2025-10-31 19:43:40] INFO: Finished at 2025-10-31 19:43:40.800337, took: 0:00:00.294437 All cleanup done. Fri Oct 31 19:43:40 UTC 2025 - total duration: 0h 1m 30s. Fri Oct 31 19:43:40 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-eoz4svRv, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 1min 31.234s CPU time consumed: 3.196s Memory peak: 41.9M (swap: 0B)