Running as unit: rb-build-arm64_3-96123.service ==================================================================================== Thu Jun 5 15:33:13 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_3) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Thu Jun 5 15:33:13 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-mX3FlCeO" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jun 5 15:33:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jun 5 15:33:13 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-f6UlCE' Thu Jun 5 15:33:13 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jun 5 15:33:13 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-sbaG74' ok, let's check if kmerresistance is building anywhere yet… ok, kmerresistance is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of kmerresistance in unstable on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Thu Jun 5 15:33:23 UTC 2025 I: starting to build kmerresistance/unstable/arm64 on jenkins on '2025-06-05 15:33' Thu Jun 5 15:33:23 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_3/96123/console.log 1749137603 arm64 unstable kmerresistance Thu Jun 5 15:33:23 UTC 2025 I: Downloading source for unstable/kmerresistance=2.2.0-4 --2025-06-05 15:33:23-- http://deb.debian.org/debian/pool/main/k/kmerresistance/kmerresistance_2.2.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2190 (2.1K) [text/prs.lines.tag] Saving to: ‘kmerresistance_2.2.0-4.dsc’ 0K .. 100% 130M=0s 2025-06-05 15:33:23 (130 MB/s) - ‘kmerresistance_2.2.0-4.dsc’ saved [2190/2190] --2025-06-05 15:33:23-- http://deb.debian.org/debian/pool/main/k/kmerresistance/kmerresistance_2.2.0-4.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2190 (2.1K) [text/prs.lines.tag] Saving to: ‘kmerresistance_2.2.0-4.dsc’ 0K .. 100% 130M=0s 2025-06-05 15:33:23 (130 MB/s) - ‘kmerresistance_2.2.0-4.dsc’ saved [2190/2190] Thu Jun 5 15:33:23 UTC 2025 I: kmerresistance_2.2.0-4.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: kmerresistance Binary: kmerresistance Architecture: any Version: 2.2.0-4 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://bitbucket.org/genomicepidemiology/kmerresistance Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/kmerresistance Vcs-Git: https://salsa.debian.org/med-team/kmerresistance.git Build-Depends: debhelper-compat (= 13), kma Package-List: kmerresistance deb science optional arch=any Checksums-Sha1: 397199d07733153e2fa0319de3dfd4f9f8e67b82 5668 kmerresistance_2.2.0.orig.tar.bz2 ec87f3193d1ebe7af6cf9f8902a713b9c8c2353b 4456 kmerresistance_2.2.0-4.debian.tar.xz Checksums-Sha256: 16ba92368a38c223fda7ba642060e76987a2fd88cc58e5d826143b7ce533da22 5668 kmerresistance_2.2.0.orig.tar.bz2 69a2d72df31d76c071eba868ec39d4ca9d2be37e70b7d91bfd5da6bdb7d72e4a 4456 kmerresistance_2.2.0-4.debian.tar.xz Files: 0db86e2c377b890a2c14a4a16ae0e003 5668 kmerresistance_2.2.0.orig.tar.bz2 ec2acf7c8d76e18418cc38f8967ad54e 4456 kmerresistance_2.2.0-4.debian.tar.xz Dgit: ebabdab1696694d04c674e827bf1bf3561e2c66e debian archive/debian/2.2.0-4 https://git.dgit.debian.org/kmerresistance -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM4dxQUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdq9PhAAnc4hZB9xnklpZ2Kscj9I3Q0Zbi1I +SsIsFpKyk19mJDQELyyJmGppRLL4EsvthxSUSWt/cEXtTmMVw1kxfw8aKxnzZI1 hLNqS4NoDQ16W5fyaFK7O5tLuq/hmTsANudkEsvzC8R6jhZePFGTq8EzStd4NGgd RM1ohW0rBMGfFSCDmT22egJ9r23VuHjkO7FOQGixyBgLo3Fs0O5wKQg2OG4CFuui fMdffH7f152I02bF39P4hyfF0eijAE1aOB2/u/cud4Pq7UYhg1L1GB8Yz7N5SnB3 miTKqU6Ff0DbFXmvj8F6IW0K7SQq/I3aOX666BakwGt0zfllAaFfd/c6eZFvChzK mxMGRsUkchpyzCYQdTWP+GyjVrg+C3fg6qgkOJhsYihpTuwpbCLuJXjuKlseUbRj 2rob8Sn+0OTy0vSjtJ0K3rpEupQvLcfoPFdA70iDvlI9ZE2xe1SjGyRFj91V4rEL 5A9N7NArvi9Nc07JODQkKGf6Rnbgp/h8QWqE9H5lQG7eyZO0J6/8bS2AcTKHYQZZ t+g0xmiO4nxzrGduBxwo7JX/TJuxD2mfz2HFbxhsZfQHQ8axmum8rnrFyOTuDHMa HlCEYtubFW3sczoAnIL4vqYydg8IWsXmIYxXgEKRlSFdvUy+bKKK9QvIH52lHIuC T7POdguXu6QDq0A= =z04F -----END PGP SIGNATURE----- Thu Jun 5 15:33:23 UTC 2025 I: Checking whether the package is not for us Thu Jun 5 15:33:23 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Thu Jun 5 15:33:23 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Thu Jun 5 15:33:23 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Thu Jun 5 15:33:23 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-Jsq8Hp' ==================================================================================== Wed Jul 8 21:56:25 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 kmerresistance unstable /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD 2.2.0-4" as arguments. Wed Jul 8 21:56:25 UTC 2026 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-6NNbKKaZ" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Wed Jul 8 21:56:25 UTC 2026 I: Downloading source for unstable/kmerresistance=2.2.0-4 Reading package lists... NOTICE: 'kmerresistance' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmerresistance.git Please use: git clone https://salsa.debian.org/med-team/kmerresistance.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (dsc) [2190 B] Get:2 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (tar) [5668 B] Get:3 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (diff) [4456 B] Fetched 12.3 kB in 0s (27.7 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kmerresistance' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmerresistance.git Please use: git clone https://salsa.debian.org/med-team/kmerresistance.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (dsc) [2190 B] Get:2 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (tar) [5668 B] Get:3 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (diff) [4456 B] Fetched 12.3 kB in 0s (27.7 kB/s) Download complete and in download only mode ============================================================================= Building kmerresistance in unstable on arm64 on codethink03-arm64 now. Date: Wed Jul 8 22:56:26 BST 2026 Date UTC: Wed Jul 8 21:56:26 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 8 09:56:26 -12 2026 I: pbuilder-time-stamp: 1783547786 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmerresistance_2.2.0-4.dsc] I: copying [./kmerresistance_2.2.0.orig.tar.bz2] I: copying [./kmerresistance_2.2.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmerresistance_2.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting kmerresistance in kmerresistance-2.2.0 dpkg-source: info: unpacking kmerresistance_2.2.0.orig.tar.bz2 dpkg-source: info: unpacking kmerresistance_2.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6616ba734ef0462f9e5e8ec2d4158b24' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1079650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_ncEV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1 --logfile b1/build.log kmerresistance_2.2.0-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), kma dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on kma; however: Package kma is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} kma{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 kma arm64 1.4.21-1 [211 kB] Fetched 11.2 MB in 0s (43.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package kma. Preparing to unpack .../29-kma_1.4.21-1_arm64.deb ... Unpacking kma (1.4.21-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up kma (1.4.21-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' rm -f kmerresistance pherror.o qseqs.o make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -o kmerresistance KmerResistance.c pherror.o qseqs.o -lm -Wl,-z,relro -Wl,-z,now In file included from /usr/include/stdio.h:970, from KmerResistance.c:24: In function 'sprintf', inlined from 'main' at KmerResistance.c:278:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'main' at KmerResistance.c:287:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ KmerResistance.c: In function 'main': KmerResistance.c:310:9: warning: 'out_len' may be used uninitialized [-Wmaybe-uninitialized] 310 | strcpy((outputfilename + out_len), ".spa"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:120:33: note: 'out_len' was declared here 120 | int args, KMA_call_len, out_len, stop; | ^~~~~~~ make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kmerresistance/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmerresistance_2.2.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../kmerresistance_2.2.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1079650 and its subdirectories I: Current time: Wed Jul 8 09:56:55 -12 2026 I: pbuilder-time-stamp: 1783547815 Wed Jul 8 21:56:55 UTC 2026 I: Signing ./b1/kmerresistance_2.2.0-4_arm64.buildinfo as kmerresistance_2.2.0-4_arm64.buildinfo.asc Wed Jul 8 21:56:55 UTC 2026 I: Signed ./b1/kmerresistance_2.2.0-4_arm64.buildinfo as ./b1/kmerresistance_2.2.0-4_arm64.buildinfo.asc Wed Jul 8 21:56:55 UTC 2026 - build #1 for kmerresistance/unstable/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Wed Jul 8 21:56:55 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-6NNbKKaZ, removing. /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD: total 16 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 15:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 15:33 b2 -rw-r--r-- 1 jenkins jenkins 2190 Oct 1 2022 kmerresistance_2.2.0-4.dsc -rw------- 1 jenkins jenkins 3348 Jun 5 15:33 rbuildlog.LO1UL1R /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1: total 92 -rw-r--r-- 1 jenkins jenkins 21009 Jun 5 15:33 build.log -rw-r--r-- 1 jenkins jenkins 18296 Jun 5 15:33 kmerresistance-dbgsym_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 4456 Jun 5 15:33 kmerresistance_2.2.0-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2190 Jun 5 15:33 kmerresistance_2.2.0-4.dsc -rw-r--r-- 1 jenkins jenkins 4917 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5799 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1521 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 10940 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1349 Jun 5 15:33 kmerresistance_2.2.0-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2: total 0 Thu Jun 5 15:33:56 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Wed Jul 8 09:56:26 -12 2026 I: pbuilder-time-stamp: 1783547786 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmerresistance_2.2.0-4.dsc] I: copying [./kmerresistance_2.2.0.orig.tar.bz2] I: copying [./kmerresistance_2.2.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmerresistance_2.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting kmerresistance in kmerresistance-2.2.0 dpkg-source: info: unpacking kmerresistance_2.2.0.orig.tar.bz2 dpkg-source: info: unpacking kmerresistance_2.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='unstable' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='6616ba734ef0462f9e5e8ec2d4158b24' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1079650' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_ncEV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1 --logfile b1/build.log kmerresistance_2.2.0-4.dsc' SUDO_GID='109' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), kma dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on kma; however: Package kma is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} kma{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 kma arm64 1.4.21-1 [211 kB] Fetched 11.2 MB in 0s (43.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2_arm64.deb ... Unpacking gettext-base (0.23.1-2) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41-5_arm64.deb ... Unpacking bsdextrautils (2.41-5) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.19-8_arm64.deb ... Unpacking m4 (1.4.19-8) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../15-libdebhelper-perl_13.24.2_all.deb ... Unpacking libdebhelper-perl (13.24.2) ... Selecting previously unselected package libtool. Preparing to unpack .../16-libtool_2.5.4-4_all.deb ... Unpacking libtool (2.5.4-4) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../17-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../18-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../19-libfile-stripnondeterminism-perl_1.14.1-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.14.1-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../20-dh-strip-nondeterminism_1.14.1-2_all.deb ... Unpacking dh-strip-nondeterminism (1.14.1-2) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../21-libelf1t64_0.192-4_arm64.deb ... Unpacking libelf1t64:arm64 (0.192-4) ... Selecting previously unselected package dwz. Preparing to unpack .../22-dwz_0.15-1+b1_arm64.deb ... Unpacking dwz (0.15-1+b1) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../23-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2:arm64. Preparing to unpack .../24-libxml2_2.12.7+dfsg+really2.9.14-1_arm64.deb ... Unpacking libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.23.1-2_arm64.deb ... Unpacking gettext (0.23.1-2) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_13.24.2_all.deb ... Unpacking debhelper (13.24.2) ... Selecting previously unselected package kma. Preparing to unpack .../29-kma_1.4.21-1_arm64.deb ... Unpacking kma (1.4.21-1) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up bsdextrautils (2.41-5) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up gettext-base (0.23.1-2) ... Setting up m4 (1.4.19-8) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up autotools-dev (20240727.1) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up autoconf (2.72-3.1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up kma (1.4.21-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' rm -f kmerresistance pherror.o qseqs.o make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -o kmerresistance KmerResistance.c pherror.o qseqs.o -lm -Wl,-z,relro -Wl,-z,now In file included from /usr/include/stdio.h:970, from KmerResistance.c:24: In function 'sprintf', inlined from 'main' at KmerResistance.c:278:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'main' at KmerResistance.c:287:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ KmerResistance.c: In function 'main': KmerResistance.c:310:9: warning: 'out_len' may be used uninitialized [-Wmaybe-uninitialized] 310 | strcpy((outputfilename + out_len), ".spa"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:120:33: note: 'out_len' was declared here 120 | int args, KMA_call_len, out_len, stop; | ^~~~~~~ make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kmerresistance/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmerresistance_2.2.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../kmerresistance_2.2.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1079650 and its subdirectories I: Current time: Wed Jul 8 09:56:55 -12 2026 I: pbuilder-time-stamp: 1783547815 Thu Jun 5 15:33:56 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Thu Jun 5 15:33:56 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Thu Jun 5 15:33:57 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Thu Jun 5 15:33:57 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-LldPsH' ==================================================================================== Thu Jun 5 15:33:58 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 kmerresistance unstable /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD 2.2.0-4" as arguments. Thu Jun 5 15:33:58 UTC 2025 - actually running "reproducible_build.sh" (md5sum 44ec6a3142940d5e9a7ab76543d96029) as "/tmp/jenkins-script-VbAukc2S" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Thu Jun 5 15:33:58 UTC 2025 I: Downloading source for unstable/kmerresistance=2.2.0-4 Reading package lists... NOTICE: 'kmerresistance' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmerresistance.git Please use: git clone https://salsa.debian.org/med-team/kmerresistance.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (dsc) [2190 B] Get:2 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (tar) [5668 B] Get:3 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (diff) [4456 B] Fetched 12.3 kB in 0s (985 kB/s) Download complete and in download only mode Reading package lists... NOTICE: 'kmerresistance' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/kmerresistance.git Please use: git clone https://salsa.debian.org/med-team/kmerresistance.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 12.3 kB of source archives. Get:1 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (dsc) [2190 B] Get:2 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (tar) [5668 B] Get:3 http://deb.debian.org/debian unstable/main kmerresistance 2.2.0-4 (diff) [4456 B] Fetched 12.3 kB in 0s (985 kB/s) Download complete and in download only mode ============================================================================= Re-Building kmerresistance in unstable on arm64 on codethink04-arm64 now. Date: Thu Jun 5 16:33:58 BST 2025 Date UTC: Thu Jun 5 15:33:58 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_iVEO + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' kmerresistance = debian-installer -o kmerresistance = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' kmerresistance = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_iVEO --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2 --logfile b2/build.log kmerresistance_2.2.0-4.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Jun 6 05:33:59 +14 2025 I: pbuilder-time-stamp: 1749137639 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [kmerresistance_2.2.0-4.dsc] I: copying [./kmerresistance_2.2.0.orig.tar.bz2] I: copying [./kmerresistance_2.2.0-4.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./kmerresistance_2.2.0-4.dsc: no acceptable signature found dpkg-source: info: extracting kmerresistance in kmerresistance-2.2.0 dpkg-source: info: unpacking kmerresistance_2.2.0.orig.tar.bz2 dpkg-source: info: unpacking kmerresistance_2.2.0-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Jun 5 15:34 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.2.37(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DIRSTACK=() DISTRIBUTION=unstable EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=a4aefb92494240378b6ed8d09f9de02d LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1432162 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_iVEO --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2 --logfile b2/build.log kmerresistance_2.2.0-4.dsc' SUDO_GID=109 SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), kma dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on kma; however: Package kma is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} kma{a} libarchive-zip-perl{a} libdebhelper-perl{a} libelf1t64{a} libfile-stripnondeterminism-perl{a} libmagic-mgc{a} libmagic1t64{a} libpipeline1{a} libtool{a} libuchardet0{a} libunistring5{a} libxml2{a} m4{a} man-db{a} po-debconf{a} sensible-utils{a} The following packages are RECOMMENDED but will NOT be installed: curl libarchive-cpio-perl libltdl-dev libmail-sendmail-perl lynx wget 0 packages upgraded, 30 newly installed, 0 to remove and 0 not upgraded. Need to get 11.2 MB of archives. After unpacking 45.5 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.25 [25.0 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2 [241 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41-5 [93.8 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.19-8 [285 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get: 22 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-1 [629 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2 [1611 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 kma arm64 1.4.21-1 [211 kB] Fetched 11.2 MB in 0s (58.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.25_all.deb ... Unpacking sensible-utils (0.0.25) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. 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Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.25) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up kma (1.4.21-1) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-2) ... Setting up libtool (2.5.4-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-9) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up debhelper (13.24.2) ... Processing triggers for libc-bin (2.41-8) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for unstable I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j12 clean make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' rm -f kmerresistance pherror.o qseqs.o make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf dh_auto_configure dh_auto_build make -j12 "INSTALL=install --strip-program=true" make[1]: Entering directory '/build/reproducible-path/kmerresistance-2.2.0' cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pherror.o pherror.c cc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qseqs.o qseqs.c cc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/build/reproducible-path/kmerresistance-2.2.0=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -O3 -std=c99 -o kmerresistance KmerResistance.c pherror.o qseqs.o -lm -Wl,-z,relro -Wl,-z,now In file included from /usr/include/stdio.h:970, from KmerResistance.c:24: In function 'sprintf', inlined from 'main' at KmerResistance.c:278:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'sprintf', inlined from 'main' at KmerResistance.c:287:2: /usr/include/aarch64-linux-gnu/bits/stdio2.h:30:10: warning: '__builtin___sprintf_chk' argument 5 overlaps destination object 'KMA_call' [-Wrestrict] 30 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 31 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 32 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ KmerResistance.c: In function 'main': KmerResistance.c:310:9: warning: 'out_len' may be used uninitialized [-Wmaybe-uninitialized] 310 | strcpy((outputfilename + out_len), ".spa"); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ KmerResistance.c:120:33: note: 'out_len' was declared here 120 | int args, KMA_call_len, out_len, stop; | ^~~~~~~ make[1]: Leaving directory '/build/reproducible-path/kmerresistance-2.2.0' dh_auto_test create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install --destdir=debian/kmerresistance/ dh_install dh_installdocs dh_installchangelogs dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-4_arm64.deb'. dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmerresistance_2.2.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../kmerresistance_2.2.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1432162 and its subdirectories I: Current time: Fri Jun 6 05:34:46 +14 2025 I: pbuilder-time-stamp: 1749137686 + false + set +x Thu Jun 5 15:34:46 UTC 2025 I: Signing ./b2/kmerresistance_2.2.0-4_arm64.buildinfo as kmerresistance_2.2.0-4_arm64.buildinfo.asc Thu Jun 5 15:34:46 UTC 2025 I: Signed ./b2/kmerresistance_2.2.0-4_arm64.buildinfo as ./b2/kmerresistance_2.2.0-4_arm64.buildinfo.asc Thu Jun 5 15:34:46 UTC 2025 - build #2 for kmerresistance/unstable/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Thu Jun 5 15:34:46 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-VbAukc2S, removing. /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD: total 40 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 15:33 b1 drwxr-xr-x 2 jenkins jenkins 4096 Jun 5 15:34 b2 -rw-r--r-- 1 jenkins jenkins 2190 Oct 1 2022 kmerresistance_2.2.0-4.dsc -rw------- 1 jenkins jenkins 24658 Jun 5 15:33 rbuildlog.LO1UL1R /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1: total 92 -rw-r--r-- 1 jenkins jenkins 21009 Jun 5 15:33 build.log -rw-r--r-- 1 jenkins jenkins 18296 Jun 5 15:33 kmerresistance-dbgsym_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 4456 Jun 5 15:33 kmerresistance_2.2.0-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2190 Jun 5 15:33 kmerresistance_2.2.0-4.dsc -rw-r--r-- 1 jenkins jenkins 4917 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5799 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1521 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 10940 Jun 5 15:33 kmerresistance_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1349 Jun 5 15:33 kmerresistance_2.2.0-4_source.changes /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2: total 92 -rw-r--r-- 1 jenkins jenkins 22954 Jun 5 15:34 build.log -rw-r--r-- 1 jenkins jenkins 18296 Jun 5 15:34 kmerresistance-dbgsym_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 4456 Jun 5 15:34 kmerresistance_2.2.0-4.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2190 Jun 5 15:34 kmerresistance_2.2.0-4.dsc -rw-r--r-- 1 jenkins jenkins 4917 Jun 5 15:34 kmerresistance_2.2.0-4_arm64.buildinfo -rw-r--r-- 1 jenkins jenkins 5799 Jun 5 15:34 kmerresistance_2.2.0-4_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1521 Jun 5 15:34 kmerresistance_2.2.0-4_arm64.changes -rw-r--r-- 1 jenkins jenkins 10940 Jun 5 15:34 kmerresistance_2.2.0-4_arm64.deb -rw-r--r-- 1 jenkins jenkins 1349 Jun 5 15:34 kmerresistance_2.2.0-4_source.changes Thu Jun 5 15:34:47 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Thu Jun 5 15:34:47 UTC 2025 I: kmerresistance_2.2.0-4_arm64.changes: Format: 1.8 Date: Sat, 01 Oct 2022 19:11:03 +0200 Source: kmerresistance Binary: kmerresistance kmerresistance-dbgsym Architecture: arm64 Version: 2.2.0-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: kmerresistance - correlates mapped genes with the predicted species of WGS samples Changes: kmerresistance (2.2.0-4) unstable; urgency=medium . * d/watch: switch to git mode following changes in bitbucket. * d/control: declare compliance to standards version 4.6.1. Checksums-Sha1: fe8d12ea9fa1e2cafe1ba0321ad02e2526195e3b 18296 kmerresistance-dbgsym_2.2.0-4_arm64.deb 0fb2ee9bb3a66a18708a80f22bff2be37b9eebd5 4917 kmerresistance_2.2.0-4_arm64.buildinfo b5170e50a3af054c0190f67fb3259a511fb46b8a 10940 kmerresistance_2.2.0-4_arm64.deb Checksums-Sha256: c8ee893e852ab5916a5584f8dafe5206446f510375aa5108813300f6e4834cb1 18296 kmerresistance-dbgsym_2.2.0-4_arm64.deb ea68caf944515fab1b68ba0bb677677c9448a8ff19a6989dbc0babe43b96b8db 4917 kmerresistance_2.2.0-4_arm64.buildinfo 64bba5ab224310a8ce60362182d8c1203c3ce960fbddcf9a7dcb9bd68029c825 10940 kmerresistance_2.2.0-4_arm64.deb Files: a54ca8c41f38e3b79fbfb295dc590ecf 18296 debug optional kmerresistance-dbgsym_2.2.0-4_arm64.deb bcafedb4b7c4a401447053880f57fc2b 4917 science optional kmerresistance_2.2.0-4_arm64.buildinfo 7830a51a48d06062228144b8c0fb9405 10940 science optional kmerresistance_2.2.0-4_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/kmerresistance_2.2.0-4.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/kmerresistance_2.2.0-4.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/kmerresistance_2.2.0-4.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/kmerresistance_2.2.0-4.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/unstable/arm64/kmerresistance_2.2.0-4_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/kmerresistance_2.2.0-4.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-06-05 15:33:56.199500835 +0000 +++ b2/build.log 2025-06-05 15:34:46.995831104 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Wed Jul 8 09:56:26 -12 2026 -I: pbuilder-time-stamp: 1783547786 +I: Current time: Fri Jun 6 05:33:59 +14 2025 +I: pbuilder-time-stamp: 1749137639 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/unstable-reproducible-base.tgz] I: copying local configuration @@ -24,52 +24,84 @@ dpkg-source: info: applying hardening.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Jun 5 15:34 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="2" [2]="37" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.2.37(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='unstable' - HOME='/root' - HOST_ARCH='arm64' + DIRSTACK=() + DISTRIBUTION=unstable + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='6616ba734ef0462f9e5e8ec2d4158b24' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1079650' - PS1='# ' - PS2='> ' + INVOCATION_ID=a4aefb92494240378b6ed8d09f9de02d + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1432162 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_ncEV --distribution unstable --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1 --logfile b1/build.log kmerresistance_2.2.0-4.dsc' - SUDO_GID='109' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/pbuilderrc_iVEO --distribution unstable --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/unstable-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2 --logfile b2/build.log kmerresistance_2.2.0-4.dsc' + SUDO_GID=109 + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.1.0-37-cloud-arm64 #1 SMP Debian 6.1.140-1 (2025-05-22) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 May 12 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1079650/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 May 12 19:25 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -137,7 +169,7 @@ Get: 28 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 kma arm64 1.4.21-1 [211 kB] -Fetched 11.2 MB in 0s (43.0 MB/s) +Fetched 11.2 MB in 0s (58.0 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) @@ -272,7 +304,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for unstable +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/kmerresistance-2.2.0/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../kmerresistance_2.2.0-4_source.changes dpkg-buildpackage: info: source package kmerresistance dpkg-buildpackage: info: source version 2.2.0-4 dpkg-buildpackage: info: source distribution unstable @@ -352,8 +388,8 @@ dh_gencontrol dh_md5sums dh_builddeb -dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-deb: building package 'kmerresistance' in '../kmerresistance_2.2.0-4_arm64.deb'. +dpkg-deb: building package 'kmerresistance-dbgsym' in '../kmerresistance-dbgsym_2.2.0-4_arm64.deb'. dpkg-genbuildinfo --build=binary -O../kmerresistance_2.2.0-4_arm64.buildinfo dpkg-genchanges --build=binary -O../kmerresistance_2.2.0-4_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -361,12 +397,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: not including original source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1432162/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1079650 and its subdirectories -I: Current time: Wed Jul 8 09:56:55 -12 2026 -I: pbuilder-time-stamp: 1783547815 +I: removing directory /srv/workspace/pbuilder/1432162 and its subdirectories +I: Current time: Fri Jun 6 05:34:46 +14 2025 +I: pbuilder-time-stamp: 1749137686 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/kmerresistance_2.2.0-4.diff: 67.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/kmerresistance_2.2.0-4.diff.gz b2/build.log: 74.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 75.2% -- replaced with stdout Thu Jun 5 15:34:48 UTC 2025 I: diffoscope 297 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_kmerresistance_unstable_arm64_1749137688 + touch /var/log/reproducible-builds/diffoscope_stamp_kmerresistance_unstable_arm64_1749137688 + RESULT=0 + systemd-run '--description=diffoscope on kmerresistance/2.2.0-4 in unstable/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_3-96123 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD --run-session -c jenkins-reproducible-unstable-diffoscope-5f84526f-1023-44cb-83d0-5fd5e9a71fb0 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/dbd-tmp-a1VTkqT ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1/kmerresistance_2.2.0-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2/kmerresistance_2.2.0-4_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_3-96123.service # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/kmerresistance_2.2.0-4.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b1/kmerresistance_2.2.0-4_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.paTTQfaD/b2/kmerresistance_2.2.0-4_arm64.changes ## command (total time: 0.000s) 0.000s 1 call cmp (internal) ## has_same_content_as (total time: 0.000s) 0.000s 1 call diffoscope.comparators.binary.FilesystemFile ## main (total time: 0.003s) 0.003s 2 calls outputs 0.000s 1 call cleanup Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 155ms CPU time consumed: 156ms _ _ _ | | ___ __ ___ ___ _ __ _ __ ___ ___(_)___| |_ __ _ _ __ ___ ___ | |/ / '_ ` _ \ / _ \ '__| '__/ _ \/ __| / __| __/ _` | '_ \ / __/ _ \ | <| | | | | | __/ | | | | __/\__ \ \__ \ || (_| | | | | (_| __/ |_|\_\_| |_| |_|\___|_| |_| \___||___/_|___/\__\__,_|_| |_|\___\___| Thu Jun 5 15:34:48 UTC 2025 I: diffoscope 297 found no differences in the changes files, and a .buildinfo file also exists. Thu Jun 5 15:34:48 UTC 2025 I: kmerresistance from unstable built successfully and reproducibly on arm64. INSERT 0 1 INSERT 0 1 DELETE 1 [2025-06-05 15:34:49] INFO: Starting at 2025-06-05 15:34:49.127056 [2025-06-05 15:34:49] INFO: Generating the pages of 1 package(s) [2025-06-05 15:34:49] CRITICAL: https://tests.reproducible-builds.org/debian/unstable/arm64/kmerresistance didn't produce a buildlog, even though it has been built. [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] INFO: Finished at 2025-06-05 15:34:49.379221, took: 0:00:00.252168 Thu Jun 5 15:34:49 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/unstable/arm64/kmerresistance.html Thu Jun 5 15:34:49 UTC 2025 I: Removing signed kmerresistance_2.2.0-4_arm64.buildinfo.asc files: removed './b1/kmerresistance_2.2.0-4_arm64.buildinfo.asc' removed './b2/kmerresistance_2.2.0-4_arm64.buildinfo.asc' 1749137689 arm64 unstable kmerresistance Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/kmerresistance_2.2.0-4.rbuild.log: 71.5% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/unstable/arm64/kmerresistance_2.2.0-4.rbuild.log.gz [2025-06-05 15:34:49] INFO: Starting at 2025-06-05 15:34:49.619797 [2025-06-05 15:34:49] INFO: Generating the pages of 1 package(s) [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/bookworm/armhf/kmerresistance_2.2.0-4.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/bookworm/armhf/kmerresistance_2.2.0-4.diff.gz is missing [2025-06-05 15:34:49] INFO: Finished at 2025-06-05 15:34:49.855694, took: 0:00:00.235899 All cleanup done. Thu Jun 5 15:34:49 UTC 2025 - total duration: 0h 1m 35s. Thu Jun 5 15:34:49 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-mX3FlCeO, removing. Finished with result: success Main processes terminated with: code=exited/status=0 Service runtime: 1min 36.863s CPU time consumed: 4.349s