Running as unit: rb-build-arm64_4-103415.service ==================================================================================== Sat Nov 1 12:56:08 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Nov 1 12:56:08 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-j7lYS9zg" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 1 12:56:08 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Nov 1 12:56:08 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-CZXG5N' Sat Nov 1 12:56:09 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Nov 1 12:56:09 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-OmwqaV' ok, let's check if ivar is building anywhere yet… ok, ivar is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of ivar in forky on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Nov 1 12:56:17 UTC 2025 I: starting to build ivar/forky/arm64 on jenkins on '2025-11-01 12:56' Sat Nov 1 12:56:17 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/103415/console.log 1762001777 arm64 forky ivar Sat Nov 1 12:56:17 UTC 2025 I: Downloading source for forky/ivar=1.4.4+dfsg-1 --2025-11-01 12:56:17-- http://deb.debian.org/debian/pool/main/i/ivar/ivar_1.4.4%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘ivar_1.4.4+dfsg-1.dsc’ 0K .. 100% 240M=0s 2025-11-01 12:56:17 (240 MB/s) - ‘ivar_1.4.4+dfsg-1.dsc’ saved [2206/2206] --2025-11-01 12:56:17-- http://deb.debian.org/debian/pool/main/i/ivar/ivar_1.4.4%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2206 (2.2K) [text/prs.lines.tag] Saving to: ‘ivar_1.4.4+dfsg-1.dsc’ 0K .. 100% 240M=0s 2025-11-01 12:56:17 (240 MB/s) - ‘ivar_1.4.4+dfsg-1.dsc’ saved [2206/2206] Sat Nov 1 12:56:17 UTC 2025 I: ivar_1.4.4+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ivar Binary: ivar, ivar-doc Architecture: any all Version: 1.4.4+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Étienne Mollier Homepage: https://github.com/andersen-lab/ivar Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ivar Vcs-Git: https://salsa.debian.org/med-team/ivar.git Testsuite: autopkgtest Testsuite-Triggers: samtools Build-Depends: debhelper-compat (= 13), libhts-dev Package-List: ivar deb science optional arch=any ivar-doc deb doc optional arch=all Checksums-Sha1: 72121d1513d75973cd03e4c4138c7f8bace0f4c5 679232 ivar_1.4.4+dfsg.orig.tar.xz 3b4ee45b4ece279fabeff4b7f224608457ec9402 46024 ivar_1.4.4+dfsg-1.debian.tar.xz Checksums-Sha256: 4f0fa3380c2a40b834e613eb134f32bb61479634af80a6fc9cf92582d34cb2c7 679232 ivar_1.4.4+dfsg.orig.tar.xz 2444d5af08f131a84412d3138ae823006a4d15d730736d4027315c8e51e3327f 46024 ivar_1.4.4+dfsg-1.debian.tar.xz Files: d58e0e00f3975fdf2c8e79811ae49cdd 679232 ivar_1.4.4+dfsg.orig.tar.xz 3ab5b382eb962e7da3510b18846762bb 46024 ivar_1.4.4+dfsg-1.debian.tar.xz Dgit: 47ffcb3b056973fe99dd3226c936067325b192a7 debian archive/debian/1.4.4+dfsg-1 https://git.dgit.debian.org/ivar -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmfDUH4UHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqvbA//e4S4CpaX5GSyZvYTwul0MdCFcQ/s XlWBBpGQ4Rdaxjl+wlEUlVY7wzRftxhapddqy4XDSZBCphqVV5QHW9ABVKcNyZQ5 KJ223mppB/yh5xhWnMTBjKTp60nlo+SC+87YE7Nfvc1siCikpU1e6+wqIcxscVMY uChe018nLiLb+YTX4+TBg9We3WZQCMfLiPWBaaZLoXTevPftSGbsICSycJWm25L3 CUVeAJ3vqGJtdkEZSwfEO9BITI2uIn/Ag8G9sUPESv7CX6YbI+uaKEhczQYIkf6j qKe74SckrSMkMj066rXqJT/tE6eFPJn0Svxx83DS/XHFac6WxT/crGYml4b3YY5N aTsAtMJ9OGunpNMjEbTi2jVJmdkHPlgxlkI9sv5RB+NNTYezKhcEZkTD9EDwlEng 3QCFL3mCCwGwSPD8iMw0FfBOm7GTRUPbsFsEdtwOCUnCNyPlSr1KuSgVeCT9cdwh zSkTIkvSYJKYon0PX21MvxiNYermCC6QfJpvMHXnODWtBlYlPX8yCm5Svcb1mdGc lqfTx5QC3dnj8jZ8ctATQORYE20J9Nr98jPbVWSFFNnxEcou7Uy10szv4TPAs+Yk Lm0xyToUSq8b05z/B1P0qBM7if0Axcm0QCOi54Ng8NVL16tupJ8UWp+xjSHcyLwm cXsmRmB2Z7+0haM= =Mlmf -----END PGP SIGNATURE----- Sat Nov 1 12:56:17 UTC 2025 I: Checking whether the package is not for us Sat Nov 1 12:56:17 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Nov 1 12:56:17 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Nov 1 12:56:17 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Nov 1 12:56:17 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-GAhsuD' ==================================================================================== Fri Dec 4 19:19:18 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 ivar forky /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq 1.4.4+dfsg-1" as arguments. Fri Dec 4 19:19:18 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-0O8iwv8T" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 19:19:18 UTC 2026 I: Downloading source for forky/ivar=1.4.4+dfsg-1 Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 727 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (tar) [679 kB] Get:3 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (diff) [46.0 kB] Fetched 727 kB in 0s (12.7 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 727 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (tar) [679 kB] Get:3 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (diff) [46.0 kB] Fetched 727 kB in 0s (12.7 MB/s) Download complete and in download only mode ============================================================================= Building ivar in forky on arm64 on codethink03-arm64 now. Date: Fri Dec 4 19:19:18 GMT 2026 Date UTC: Fri Dec 4 19:19:18 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 07:19:19 -12 2026 I: pbuilder-time-stamp: 1796411959 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ivar_1.4.4+dfsg-1.dsc] I: copying [./ivar_1.4.4+dfsg.orig.tar.xz] I: copying [./ivar_1.4.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting ivar in ivar-1.4.4+dfsg dpkg-source: info: unpacking ivar_1.4.4+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='aa6309b3329b4f3c89e3f40f9a71aeda' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1854186' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_Tx87 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 35 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-2 [560 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc3-1 [498 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 30.8 MB in 0s (145 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../15-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../16-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../26-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../31-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../32-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../33-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../34-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../35-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../36-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../37-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../38-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../39-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../40-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../41-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../42-libbrotli-dev_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../43-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../44-libnghttp3-9_1.12.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../45-libngtcp2-16_1.16.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.16.0-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../46-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../47-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../48-libp11-kit0_0.25.9-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../49-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../50-libgnutls30t64_3.8.10-3_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../51-libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../52-libsasl2-2_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../53-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../54-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../55-libngtcp2-crypto-gnutls8_1.16.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../56-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../57-librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../58-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../59-libcurl3t64-gnutls_8.17.0~rc3-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.17.0~rc3-1) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../60-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../61-libunbound8_1.24.1-2_arm64.deb ... Unpacking libunbound8:arm64 (1.24.1-2) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../62-libgnutls-dane0t64_3.8.10-3_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.10-3) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../63-libgnutls-openssl27t64_3.8.10-3_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.10-3) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../64-libidn2-dev_2.3.8-4_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../65-libp11-kit-dev_0.25.9-2_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../66-libtasn1-6-dev_4.20.0-2_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ... Selecting previously unselected package libgmpxx4ldbl:arm64. Preparing to unpack .../67-libgmpxx4ldbl_2%3a6.3.0+dfsg-5_arm64.deb ... Unpacking libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package libgmp-dev:arm64. Preparing to unpack .../68-libgmp-dev_2%3a6.3.0+dfsg-5_arm64.deb ... Unpacking libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Selecting previously unselected package nettle-dev:arm64. Preparing to unpack .../69-nettle-dev_3.10.2-1_arm64.deb ... Unpacking nettle-dev:arm64 (3.10.2-1) ... Selecting previously unselected package libgnutls28-dev:arm64. Preparing to unpack .../70-libgnutls28-dev_3.8.10-3_arm64.deb ... Unpacking libgnutls28-dev:arm64 (3.8.10-3) ... Selecting previously unselected package libkrb5-dev:arm64. Preparing to unpack .../71-libkrb5-dev_1.21.3-5_arm64.deb ... Unpacking libkrb5-dev:arm64 (1.21.3-5) ... Selecting previously unselected package libldap-dev:arm64. Preparing to unpack .../72-libldap-dev_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap-dev:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libpkgconf3:arm64. Preparing to unpack .../73-libpkgconf3_1.8.1-4_arm64.deb ... Unpacking libpkgconf3:arm64 (1.8.1-4) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../74-pkgconf-bin_1.8.1-4_arm64.deb ... Unpacking pkgconf-bin (1.8.1-4) ... Selecting previously unselected package pkgconf:arm64. Preparing to unpack .../75-pkgconf_1.8.1-4_arm64.deb ... Unpacking pkgconf:arm64 (1.8.1-4) ... Selecting previously unselected package libnghttp2-dev:arm64. Preparing to unpack .../76-libnghttp2-dev_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libnghttp3-dev:arm64. Preparing to unpack .../77-libnghttp3-dev_1.12.0-1_arm64.deb ... Unpacking libnghttp3-dev:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-crypto-gnutls-dev:arm64. Preparing to unpack .../78-libngtcp2-crypto-gnutls-dev_1.16.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls-dev:arm64 (1.16.0-1) ... Selecting previously unselected package libngtcp2-dev:arm64. Preparing to unpack .../79-libngtcp2-dev_1.16.0-1_arm64.deb ... Unpacking libngtcp2-dev:arm64 (1.16.0-1) ... Selecting previously unselected package libpsl-dev:arm64. Preparing to unpack .../80-libpsl-dev_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl-dev:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../81-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Selecting previously unselected package librtmp-dev:arm64. Preparing to unpack .../82-librtmp-dev_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssl-dev:arm64. Preparing to unpack .../83-libssl-dev_3.5.4-1_arm64.deb ... Unpacking libssl-dev:arm64 (3.5.4-1) ... Selecting previously unselected package libssh2-1-dev:arm64. Preparing to unpack .../84-libssh2-1-dev_1.11.1-1_arm64.deb ... Unpacking libssh2-1-dev:arm64 (1.11.1-1) ... Selecting previously unselected package libzstd-dev:arm64. Preparing to unpack .../85-libzstd-dev_1.5.7+dfsg-2_arm64.deb ... Unpacking libzstd-dev:arm64 (1.5.7+dfsg-2) ... Selecting previously unselected package libcurl4-gnutls-dev:arm64. Preparing to unpack .../86-libcurl4-gnutls-dev_8.17.0~rc3-1_arm64.deb ... Unpacking libcurl4-gnutls-dev:arm64 (8.17.0~rc3-1) ... Selecting previously unselected package libdeflate0:arm64. Preparing to unpack .../87-libdeflate0_1.23-2_arm64.deb ... Unpacking libdeflate0:arm64 (1.23-2) ... Selecting previously unselected package libdeflate-dev:arm64. Preparing to unpack .../88-libdeflate-dev_1.23-2_arm64.deb ... Unpacking libdeflate-dev:arm64 (1.23-2) ... Selecting previously unselected package libhtscodecs2:arm64. 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Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... 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Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:arm64 (8.17.0~rc3-1) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tablesCOLLECT_GCC=g++ -o /tmp/cce1rRM3.s OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc1r4ZM3.s Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cch54W2O.s COLLECT_GCC=g++ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Using built-in specs. Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --diCOLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) sable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccHt9fzU.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" Using built-in specs. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" #include "..." search starts here: #include <...> search starts here: COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plusEnd of search list. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc33bs7D.s /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc7kd4hr.s -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccTyhELC.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" Compiler executable checksum: b91b1b20f7c83510ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" 96a2e5bafa9b64fdignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccqWmwJN.s g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccjTi3D7.s Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc9jnPTc.s Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o alignment.o /tmp/ccHt9fzU.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccT8MnrJ.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccTyhELC.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_masked_amplicons.o /tmp/ccqWmwJN.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'remove_reads_from_amplicon.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccRBhjhz.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_consensus_pileup.o /tmp/cc1r4ZM3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o suffix_tree.o /tmp/cch54W2O.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o interval_tree.o /tmp/ccRBhjhz.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o allele_functions.o /tmp/cc7kd4hr.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'interval_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_consensus_pileup.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/cc33bs7D.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/cce1rRM3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/ccjTi3D7.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccT8MnrJ.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/ccM6M3S6.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccrKgPsg.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cc9jnPTc.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'parse_gff.' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwTT4Gk.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_auto_test --no-parallel make -j1 check TESTSUITEFLAGS="-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making check in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making check in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_trim.o test_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim.o test_quality_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim test_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim_unpaired.o test_quality_trim_unpaired.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim_unpaired test_quality_trim_unpaired.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants_reverse_strand.o test_variants_reverse_strand.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_strand_variants test_variants_reverse_strand.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make check-TESTS make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants PASS: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search PASS: check_consensus_min_insert_threshold PASS: check_quality_trim_unpaired PASS: check_strand_variants ============================================================================ Testsuite summary for ivar 1.4.4 ============================================================================ # TOTAL: 21 # PASS: 21 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccBFKHzg.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making install in tests make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules execute_before_dh_fixperms make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'. dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1854186 and its subdirectories I: Current time: Fri Dec 4 07:20:33 -12 2026 I: pbuilder-time-stamp: 1796412033 Fri Dec 4 19:20:33 UTC 2026 I: Signing ./b1/ivar_1.4.4+dfsg-1_arm64.buildinfo as ivar_1.4.4+dfsg-1_arm64.buildinfo.asc Fri Dec 4 19:20:33 UTC 2026 I: Signed ./b1/ivar_1.4.4+dfsg-1_arm64.buildinfo as ./b1/ivar_1.4.4+dfsg-1_arm64.buildinfo.asc Fri Dec 4 19:20:33 UTC 2026 - build #1 for ivar/forky/arm64 on codethink03-arm64 done. Starting cleanup. All cleanup done. Fri Dec 4 19:20:33 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-0O8iwv8T, removing. /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 12:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 12:56 b2 -rw-rw-r-- 1 jenkins jenkins 2206 Mar 1 2025 ivar_1.4.4+dfsg-1.dsc -rw------- 1 jenkins jenkins 3316 Nov 1 12:56 rbuildlog.z15iA0x /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1: total 3004 -rw-r--r-- 1 jenkins jenkins 151802 Nov 1 12:57 build.log -rw-r--r-- 1 jenkins jenkins 1695732 Nov 1 12:57 ivar-dbgsym_1.4.4+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 256212 Nov 1 12:57 ivar-doc_1.4.4+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 46024 Nov 1 12:57 ivar_1.4.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Nov 1 12:57 ivar_1.4.4+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 7055 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7937 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1921 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 208688 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1677 Nov 1 12:57 ivar_1.4.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 679232 Nov 1 12:57 ivar_1.4.4+dfsg.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2: total 0 Sat Nov 1 12:57:34 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 07:19:19 -12 2026 I: pbuilder-time-stamp: 1796411959 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ivar_1.4.4+dfsg-1.dsc] I: copying [./ivar_1.4.4+dfsg.orig.tar.xz] I: copying [./ivar_1.4.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting ivar in ivar-1.4.4+dfsg dpkg-source: info: unpacking ivar_1.4.4+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='forky' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='aa6309b3329b4f3c89e3f40f9a71aeda' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='1854186' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_Tx87 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 35 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-2 [560 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc3-1 [498 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 30.8 MB in 0s (145 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../02-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../03-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../04-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../05-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../06-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../07-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../08-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../09-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../10-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../11-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../12-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../13-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../14-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package libcom-err2:arm64. Preparing to unpack .../15-libcom-err2_1.47.2-3+b3_arm64.deb ... Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package comerr-dev:arm64. Preparing to unpack .../16-comerr-dev_2.1-1.47.2-3+b3_arm64.deb ... Unpacking comerr-dev:arm64 (2.1-1.47.2-3+b3) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../17-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../18-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../19-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../20-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../21-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../22-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../23-libelf1t64_0.193-3_arm64.deb ... Unpacking libelf1t64:arm64 (0.193-3) ... Selecting previously unselected package dwz. Preparing to unpack .../24-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../25-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../26-libxml2-16_2.14.6+dfsg-0.1_arm64.deb ... Unpacking libxml2-16:arm64 (2.14.6+dfsg-0.1) ... Selecting previously unselected package gettext. Preparing to unpack .../27-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../28-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../29-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../30-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libkrb5support0:arm64. Preparing to unpack .../31-libkrb5support0_1.21.3-5_arm64.deb ... Unpacking libkrb5support0:arm64 (1.21.3-5) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../32-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../33-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../34-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../35-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libgssrpc4t64:arm64. Preparing to unpack .../36-libgssrpc4t64_1.21.3-5_arm64.deb ... Unpacking libgssrpc4t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5clnt-mit12:arm64. Preparing to unpack .../37-libkadm5clnt-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5clnt-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package libkdb5-10t64:arm64. Preparing to unpack .../38-libkdb5-10t64_1.21.3-5_arm64.deb ... Unpacking libkdb5-10t64:arm64 (1.21.3-5) ... Selecting previously unselected package libkadm5srv-mit12:arm64. Preparing to unpack .../39-libkadm5srv-mit12_1.21.3-5_arm64.deb ... Unpacking libkadm5srv-mit12:arm64 (1.21.3-5) ... Selecting previously unselected package krb5-multidev:arm64. Preparing to unpack .../40-krb5-multidev_1.21.3-5_arm64.deb ... Unpacking krb5-multidev:arm64 (1.21.3-5) ... Selecting previously unselected package libbrotli1:arm64. Preparing to unpack .../41-libbrotli1_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli1:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbrotli-dev:arm64. Preparing to unpack .../42-libbrotli-dev_1.1.0-2+b7_arm64.deb ... Unpacking libbrotli-dev:arm64 (1.1.0-2+b7) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../43-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package libnghttp3-9:arm64. Preparing to unpack .../44-libnghttp3-9_1.12.0-1_arm64.deb ... Unpacking libnghttp3-9:arm64 (1.12.0-1) ... Selecting previously unselected package libngtcp2-16:arm64. Preparing to unpack .../45-libngtcp2-16_1.16.0-1_arm64.deb ... Unpacking libngtcp2-16:arm64 (1.16.0-1) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../46-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../47-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../48-libp11-kit0_0.25.9-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../49-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../50-libgnutls30t64_3.8.10-3_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-3) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../51-libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../52-libsasl2-2_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../53-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../54-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-gnutls8:arm64. Preparing to unpack .../55-libngtcp2-crypto-gnutls8_1.16.0-1_arm64.deb ... Unpacking libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../56-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../57-librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../58-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../59-libcurl3t64-gnutls_8.17.0~rc3-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.17.0~rc3-1) ... Selecting previously unselected package libevent-2.1-7t64:arm64. Preparing to unpack .../60-libevent-2.1-7t64_2.1.12-stable-10+b1_arm64.deb ... Unpacking libevent-2.1-7t64:arm64 (2.1.12-stable-10+b1) ... Selecting previously unselected package libunbound8:arm64. Preparing to unpack .../61-libunbound8_1.24.1-2_arm64.deb ... Unpacking libunbound8:arm64 (1.24.1-2) ... Selecting previously unselected package libgnutls-dane0t64:arm64. Preparing to unpack .../62-libgnutls-dane0t64_3.8.10-3_arm64.deb ... Unpacking libgnutls-dane0t64:arm64 (3.8.10-3) ... Selecting previously unselected package libgnutls-openssl27t64:arm64. Preparing to unpack .../63-libgnutls-openssl27t64_3.8.10-3_arm64.deb ... Unpacking libgnutls-openssl27t64:arm64 (3.8.10-3) ... Selecting previously unselected package libidn2-dev:arm64. Preparing to unpack .../64-libidn2-dev_2.3.8-4_arm64.deb ... Unpacking libidn2-dev:arm64 (2.3.8-4) ... Selecting previously unselected package libp11-kit-dev:arm64. Preparing to unpack .../65-libp11-kit-dev_0.25.9-2_arm64.deb ... Unpacking libp11-kit-dev:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6-dev:arm64. Preparing to unpack .../66-libtasn1-6-dev_4.20.0-2_arm64.deb ... Unpacking libtasn1-6-dev:arm64 (4.20.0-2) ... 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Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '1111' is supported by ustar format... yes checking whether GID '1111' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tablesCOLLECT_GCC=g++ -o /tmp/cce1rRM3.s OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc1r4ZM3.s Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp Using built-in specs. COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cch54W2O.s COLLECT_GCC=g++ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Using built-in specs. Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --diCOLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) sable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccM6M3S6.s ror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccHt9fzU.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" Using built-in specs. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" #include "..." search starts here: #include <...> search starts here: COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plusEnd of search list. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc33bs7D.s /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" Compiler executable checksum: b91b1b20f7c83510ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" 96a2e5bafa9b64fdignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' 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COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccTyhELC.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'remove_reads_from_amplicon.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_consensus_pileup.o /tmp/cc1r4ZM3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'interval_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_consensus_pileup.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/cc33bs7D.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/cce1rRM3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/ccjTi3D7.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccT8MnrJ.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/ccM6M3S6.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccrKgPsg.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cc9jnPTc.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'parse_gff.' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwTT4Gk.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' debian/rules override_dh_auto_test make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_auto_test --no-parallel make -j1 check TESTSUITEFLAGS="-j1 --verbose" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making check in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'check'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making check in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim.o test_primer_trim.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/trim_primer_quality.o ../src/trim_primer_quality.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/primer_bed.o ../src/primer_bed.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/interval_tree.o ../src/interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim test_primer_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_trim.o test_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim.o test_quality_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim test_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_call_consensus_from_plup.o test_call_consensus_from_plup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_consensus_pileup.o ../src/call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/allele_functions.o ../src/allele_functions.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus test_call_consensus_from_plup.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_allele_depth.o test_allele_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_allele_depth test_allele_depth.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_threshold.o test_consensus_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_threshold test_consensus_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_seq_id.o test_consensus_seq_id.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_seq_id test_consensus_seq_id.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_bed.o test_primer_bed.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_bed test_primer_bed.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_getmasked.o test_getmasked.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_masked_amplicons.o ../src/get_masked_amplicons.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_getmasked test_getmasked.o ../src/get_masked_amplicons.o ../src/primer_bed.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_removereads.o test_removereads.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/remove_reads_from_amplicon.o ../src/remove_reads_from_amplicon.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_removereads test_removereads.o ../src/remove_reads_from_amplicon.o ../src/primer_bed.o ../src/trim_primer_quality.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants.o test_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/call_variants.o ../src/call_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/parse_gff.o ../src/parse_gff.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/ref_seq.o ../src/ref_seq.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_common_variants.o test_common_variants.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_unpaired_trim.o test_unpaired_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_isize_trim.o test_isize_trim.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_interval_tree.o test_interval_tree.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_amplicon_search.o test_amplicon_search.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim_unpaired.o test_quality_trim_unpaired.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim_unpaired test_quality_trim_unpaired.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants_reverse_strand.o test_variants_reverse_strand.cpp g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_strand_variants test_variants_reverse_strand.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make check-TESTS make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' PASS: check_primer_trim PASS: check_trim PASS: check_quality_trim PASS: check_consensus PASS: check_allele_depth PASS: check_consensus_threshold PASS: check_consensus_min_depth PASS: check_consensus_seq_id PASS: check_primer_bed PASS: check_getmasked PASS: check_removereads PASS: check_variants PASS: check_common_variants PASS: check_unpaired_trim PASS: check_primer_trim_edge_cases PASS: check_isize_trim PASS: check_interval_tree PASS: check_amplicon_search PASS: check_consensus_min_insert_threshold PASS: check_quality_trim_unpaired PASS: check_strand_variants ============================================================================ Testsuite summary for ivar 1.4.4 ============================================================================ # TOTAL: 21 # PASS: 21 # SKIP: 0 # XFAIL: 0 # FAIL: 0 # XPASS: 0 # ERROR: 0 ============================================================================ make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccBFKHzg.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making install in tests make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules execute_before_dh_fixperms make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'. dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1854186 and its subdirectories I: Current time: Fri Dec 4 07:20:33 -12 2026 I: pbuilder-time-stamp: 1796412033 Sat Nov 1 12:57:34 UTC 2025 I: 1st build successful. Starting 2nd build on remote node codethink04-arm64.debian.net. Sat Nov 1 12:57:34 UTC 2025 I: Preparing to do remote build '2' on codethink04-arm64.debian.net. Sat Nov 1 12:57:34 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Nov 1 12:57:34 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-x3cK3o' ==================================================================================== Sat Nov 1 12:57:36 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink04-arm64, called using "2 ivar forky /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq 1.4.4+dfsg-1" as arguments. Sat Nov 1 12:57:36 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-Al3VVlEk" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 1 12:57:36 UTC 2025 I: Downloading source for forky/ivar=1.4.4+dfsg-1 Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 727 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (tar) [679 kB] Get:3 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (diff) [46.0 kB] Fetched 727 kB in 0s (31.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'ivar' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ivar.git Please use: git clone https://salsa.debian.org/med-team/ivar.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 727 kB of source archives. Get:1 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (dsc) [2206 B] Get:2 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (tar) [679 kB] Get:3 http://deb.debian.org/debian forky/main ivar 1.4.4+dfsg-1 (diff) [46.0 kB] Fetched 727 kB in 0s (31.2 MB/s) Download complete and in download only mode ============================================================================= Re-Building ivar in forky on arm64 on codethink04-arm64 now. Date: Sat Nov 1 12:57:36 GMT 2025 Date UTC: Sat Nov 1 12:57:36 UTC 2025 ============================================================================= ++ mktemp -t pbuilderrc_XXXX --tmpdir=/srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq + local TMPCFG=/srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_s4kp + case ${ARCH} in + case $ARCH in + locale=nl_BE + language=nl + case "${SUITE}" in + reproducible_buildflags=+all + extra_deb_build_options= + case "${SRCPACKAGE}" in + cat + echo BUILDDIR=/build/reproducible-path + '[' ivar = debian-installer -o ivar = debian-installer-netboot-images ']' + pbuilder_options=() + local pbuilder_options + DEBBUILDOPTS=-b + BINARYTARGET= + '[' ivar = u-boot ']' + case "${SRCPACKAGE}" in + PBUILDERTIMEOUT=24 + local PRESULT=0 + sudo timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_s4kp --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc W: /root/.pbuilderrc does not exist I: Logging to b2/build.log I: pbuilder: network access will be disabled during build I: Current time: Sun Nov 2 02:57:37 +14 2025 I: pbuilder-time-stamp: 1762001857 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [ivar_1.4.4+dfsg-1.dsc] I: copying [./ivar_1.4.4+dfsg.orig.tar.xz] I: copying [./ivar_1.4.4+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./ivar_1.4.4+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting ivar in ivar-1.4.4+dfsg dpkg-source: info: unpacking ivar_1.4.4+dfsg.orig.tar.xz dpkg-source: info: unpacking ivar_1.4.4+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying Fix-warning.patch dpkg-source: info: applying forward-build-options.patch dpkg-source: info: applying privacy-breach.patch dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D01_modify_environment starting debug: Running on codethink04-arm64. I: Changing host+domainname to test build reproducibility I: Adding a custom variable just for the fun of it... I: Changing /bin/sh to bash '/bin/sh' -> '/bin/bash' lrwxrwxrwx 1 root root 9 Nov 1 12:57 /bin/sh -> /bin/bash I: Setting pbuilder2's login shell to /bin/bash I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D01_modify_environment finished I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D02_print_environment starting I: set BASH=/bin/sh BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath BASH_ALIASES=() BASH_ARGC=() BASH_ARGV=() BASH_CMDS=() BASH_LINENO=([0]="12" [1]="0") BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") BASH_VERSION='5.3.3(1)-release' BUILDDIR=/build/reproducible-path BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' BUILDUSERNAME=pbuilder2 BUILD_ARCH=arm64 DEBIAN_FRONTEND=noninteractive DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' DIRSTACK=() DISTRIBUTION=forky EUID=0 FUNCNAME=([0]="Echo" [1]="main") GROUPS=() HOME=/root HOSTNAME=i-capture-the-hostname HOSTTYPE=aarch64 HOST_ARCH=arm64 IFS=' ' INVOCATION_ID=fb3cc9eeee894b81b6e00eb46fbcb66a LANG=C LANGUAGE=nl_BE:nl LC_ALL=C MACHTYPE=aarch64-unknown-linux-gnu MAIL=/var/mail/root OPTERR=1 OPTIND=1 OSTYPE=linux-gnu PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path PBCURRENTCOMMANDLINEOPERATION=build PBUILDER_OPERATION=build PBUILDER_PKGDATADIR=/usr/share/pbuilder PBUILDER_PKGLIBDIR=/usr/lib/pbuilder PBUILDER_SYSCONFDIR=/etc PIPESTATUS=([0]="0") POSIXLY_CORRECT=y PPID=1689819 PS4='+ ' PWD=/ SHELL=/bin/bash SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix SHLVL=3 SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_s4kp --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc' SUDO_GID=109 SUDO_HOME=/var/lib/jenkins SUDO_UID=104 SUDO_USER=jenkins TERM=unknown TZ=/usr/share/zoneinfo/Etc/GMT-14 UID=0 USER=root _='I: set' http_proxy=http://192.168.101.4:3128 I: uname -a Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on libhts-dev; however: Package libhts-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} comerr-dev{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} krb5-multidev{a} libarchive-zip-perl{a} libbrotli-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl3t64-gnutls{a} libcurl4-gnutls-dev{a} libdebhelper-perl{a} libdeflate-dev{a} libdeflate0{a} libelf1t64{a} libevent-2.1-7t64{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgmp-dev{a} libgmpxx4ldbl{a} libgnutls-dane0t64{a} libgnutls-openssl27t64{a} libgnutls28-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libgssrpc4t64{a} libhts-dev{a} libhts3t64{a} libhtscodecs2{a} libidn2-0{a} libidn2-dev{a} libk5crypto3{a} libkadm5clnt-mit12{a} libkadm5srv-mit12{a} libkdb5-10t64{a} libkeyutils1{a} libkrb5-3{a} libkrb5-dev{a} libkrb5support0{a} libldap-dev{a} libldap2{a} liblzma-dev{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp2-dev{a} libnghttp3-9{a} libnghttp3-dev{a} libngtcp2-16{a} libngtcp2-crypto-gnutls-dev{a} libngtcp2-crypto-gnutls8{a} libngtcp2-dev{a} libp11-kit-dev{a} libp11-kit0{a} libpipeline1{a} libpkgconf3{a} libpsl-dev{a} libpsl5t64{a} librtmp-dev{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1-dev{a} libssh2-1t64{a} libssl-dev{a} libtasn1-6{a} libtasn1-6-dev{a} libtool{a} libuchardet0{a} libunbound8{a} libunistring5{a} libxml2-16{a} libzstd-dev{a} m4{a} man-db{a} nettle-dev{a} pkgconf{a} pkgconf-bin{a} po-debconf{a} sensible-utils{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules libtasn1-doc lynx publicsuffix wget 0 packages upgraded, 93 newly installed, 0 to remove and 0 not upgraded. Need to get 30.8 MB of archives. After unpacking 115 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian forky/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 2 http://deb.debian.org/debian forky/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 3 http://deb.debian.org/debian forky/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 4 http://deb.debian.org/debian forky/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 5 http://deb.debian.org/debian forky/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 6 http://deb.debian.org/debian forky/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 7 http://deb.debian.org/debian forky/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 8 http://deb.debian.org/debian forky/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 9 http://deb.debian.org/debian forky/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 10 http://deb.debian.org/debian forky/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 11 http://deb.debian.org/debian forky/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 12 http://deb.debian.org/debian forky/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 13 http://deb.debian.org/debian forky/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 14 http://deb.debian.org/debian forky/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 15 http://deb.debian.org/debian forky/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 16 http://deb.debian.org/debian forky/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 17 http://deb.debian.org/debian forky/main arm64 comerr-dev arm64 2.1-1.47.2-3+b3 [56.9 kB] Get: 18 http://deb.debian.org/debian forky/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 19 http://deb.debian.org/debian forky/main arm64 libtool all 2.5.4-7 [540 kB] Get: 20 http://deb.debian.org/debian forky/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 21 http://deb.debian.org/debian forky/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 22 http://deb.debian.org/debian forky/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 23 http://deb.debian.org/debian forky/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 24 http://deb.debian.org/debian forky/main arm64 libelf1t64 arm64 0.193-3 [189 kB] Get: 25 http://deb.debian.org/debian forky/main arm64 dwz arm64 0.16-2 [100 kB] Get: 26 http://deb.debian.org/debian forky/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 27 http://deb.debian.org/debian forky/main arm64 libxml2-16 arm64 2.14.6+dfsg-0.1 [601 kB] Get: 28 http://deb.debian.org/debian forky/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 29 http://deb.debian.org/debian forky/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 30 http://deb.debian.org/debian forky/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 31 http://deb.debian.org/debian forky/main arm64 debhelper all 13.28 [941 kB] Get: 32 http://deb.debian.org/debian forky/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 33 http://deb.debian.org/debian forky/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 34 http://deb.debian.org/debian forky/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 35 http://deb.debian.org/debian forky/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 36 http://deb.debian.org/debian forky/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 37 http://deb.debian.org/debian forky/main arm64 libgssrpc4t64 arm64 1.21.3-5 [57.2 kB] Get: 38 http://deb.debian.org/debian forky/main arm64 libkadm5clnt-mit12 arm64 1.21.3-5 [41.1 kB] Get: 39 http://deb.debian.org/debian forky/main arm64 libkdb5-10t64 arm64 1.21.3-5 [41.3 kB] Get: 40 http://deb.debian.org/debian forky/main arm64 libkadm5srv-mit12 arm64 1.21.3-5 [53.0 kB] Get: 41 http://deb.debian.org/debian forky/main arm64 krb5-multidev arm64 1.21.3-5 [126 kB] Get: 42 http://deb.debian.org/debian forky/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 43 http://deb.debian.org/debian forky/main arm64 libbrotli-dev arm64 1.1.0-2+b7 [308 kB] Get: 44 http://deb.debian.org/debian forky/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 45 http://deb.debian.org/debian forky/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 46 http://deb.debian.org/debian forky/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 47 http://deb.debian.org/debian forky/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 48 http://deb.debian.org/debian forky/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 49 http://deb.debian.org/debian forky/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 50 http://deb.debian.org/debian forky/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 51 http://deb.debian.org/debian forky/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 52 http://deb.debian.org/debian forky/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 53 http://deb.debian.org/debian forky/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 54 http://deb.debian.org/debian forky/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 55 http://deb.debian.org/debian forky/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 56 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls8 arm64 1.16.0-1 [23.8 kB] Get: 57 http://deb.debian.org/debian forky/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 58 http://deb.debian.org/debian forky/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 59 http://deb.debian.org/debian forky/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 60 http://deb.debian.org/debian forky/main arm64 libcurl3t64-gnutls arm64 8.17.0~rc3-1 [362 kB] Get: 61 http://deb.debian.org/debian forky/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get: 62 http://deb.debian.org/debian forky/main arm64 libunbound8 arm64 1.24.1-2 [560 kB] Get: 63 http://deb.debian.org/debian forky/main arm64 libgnutls-dane0t64 arm64 3.8.10-3 [456 kB] Get: 64 http://deb.debian.org/debian forky/main arm64 libgnutls-openssl27t64 arm64 3.8.10-3 [455 kB] Get: 65 http://deb.debian.org/debian forky/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get: 66 http://deb.debian.org/debian forky/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get: 67 http://deb.debian.org/debian forky/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get: 68 http://deb.debian.org/debian forky/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get: 69 http://deb.debian.org/debian forky/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get: 70 http://deb.debian.org/debian forky/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get: 71 http://deb.debian.org/debian forky/main arm64 libgnutls28-dev arm64 3.8.10-3 [1414 kB] Get: 72 http://deb.debian.org/debian forky/main arm64 libkrb5-dev arm64 1.21.3-5 [16.1 kB] Get: 73 http://deb.debian.org/debian forky/main arm64 libldap-dev arm64 2.6.10+dfsg-1 [305 kB] Get: 74 http://deb.debian.org/debian forky/main arm64 libpkgconf3 arm64 1.8.1-4 [35.3 kB] Get: 75 http://deb.debian.org/debian forky/main arm64 pkgconf-bin arm64 1.8.1-4 [29.6 kB] Get: 76 http://deb.debian.org/debian forky/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get: 77 http://deb.debian.org/debian forky/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get: 78 http://deb.debian.org/debian forky/main arm64 libnghttp3-dev arm64 1.12.0-1 [91.6 kB] Get: 79 http://deb.debian.org/debian forky/main arm64 libngtcp2-crypto-gnutls-dev arm64 1.16.0-1 [24.6 kB] Get: 80 http://deb.debian.org/debian forky/main arm64 libngtcp2-dev arm64 1.16.0-1 [183 kB] Get: 81 http://deb.debian.org/debian forky/main arm64 libpsl-dev arm64 0.21.2-1.1+b1 [77.9 kB] Get: 82 http://deb.debian.org/debian forky/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get: 83 http://deb.debian.org/debian forky/main arm64 librtmp-dev arm64 2.4+20151223.gitfa8646d.1-3 [173 kB] Get: 84 http://deb.debian.org/debian forky/main arm64 libssl-dev arm64 3.5.4-1 [3377 kB] Get: 85 http://deb.debian.org/debian forky/main arm64 libssh2-1-dev arm64 1.11.1-1 [388 kB] Get: 86 http://deb.debian.org/debian forky/main arm64 libzstd-dev arm64 1.5.7+dfsg-2 [330 kB] Get: 87 http://deb.debian.org/debian forky/main arm64 libcurl4-gnutls-dev arm64 8.17.0~rc3-1 [498 kB] Get: 88 http://deb.debian.org/debian forky/main arm64 libdeflate0 arm64 1.23-2 [42.4 kB] Get: 89 http://deb.debian.org/debian forky/main arm64 libdeflate-dev arm64 1.23-2 [51.3 kB] Get: 90 http://deb.debian.org/debian forky/main arm64 libhtscodecs2 arm64 1.6.1-2 [74.7 kB] Get: 91 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] Fetched 30.8 MB in 0s (66.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../01-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. 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Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up libnghttp3-dev:arm64 (1.12.0-1) ... Setting up liblzma-dev:arm64 (5.8.1-2) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libtasn1-6-dev:arm64 (4.20.0-2) ... Setting up libdeflate-dev:arm64 (1.23-2) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbrotli-dev:arm64 (1.1.0-2+b7) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up gettext (0.23.1-2+b1) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libngtcp2-dev:arm64 (1.16.0-1) ... Setting up pkgconf:arm64 (1.8.1-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libldap-dev:arm64 (2.6.10+dfsg-1) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libssh2-1-dev:arm64 (1.11.1-1) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-3) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libpsl-dev:arm64 (0.21.2-1.1+b1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-3) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libgssrpc4t64:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.16.0-1) ... Setting up libkadm5clnt-mit12:arm64 (1.21.3-5) ... Setting up libgnutls28-dev:arm64 (3.8.10-3) ... Setting up libkdb5-10t64:arm64 (1.21.3-5) ... Setting up libcurl3t64-gnutls:arm64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up libngtcp2-crypto-gnutls-dev:arm64 (1.16.0-1) ... Setting up librtmp-dev:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libkadm5srv-mit12:arm64 (1.21.3-5) ... Setting up libhts3t64:arm64 (1.22.1+ds2-1) ... Setting up krb5-multidev:arm64 (1.21.3-5) ... Setting up libkrb5-dev:arm64 (1.21.3-5) ... Setting up libcurl4-gnutls-dev:arm64 (8.17.0~rc3-1) ... Setting up libhts-dev:arm64 (1.22.1+ds2-1) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/A99_set_merged_usr starting Not re-configuring usrmerge for forky I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/A99_set_merged_usr finished hostname: Name or service not known I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary dh binary dh_update_autotools_config dh_autoreconf configure.ac:12: installing './compile' configure.ac:58: installing './config.guess' configure.ac:58: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' parallel-tests: installing './test-driver' dh_auto_configure ./configure --build=aarch64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking checking for a BSD-compatible install... /usr/bin/install -c checking whether sleep supports fractional seconds... yes checking filesystem timestamp resolution... 0.01 checking whether build environment is sane... yes checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes checking whether UID '2222' is supported by ustar format... yes checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gawk... (cached) mawk checking for g++... g++ checking whether the C++ compiler works... yes checking for C++ compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... no checking for suffix of object files... o checking whether the compiler supports GNU C++... yes checking whether g++ accepts -g... yes checking for g++ option to enable C++11 features... none needed checking whether make supports the include directive... yes (GNU style) checking dependency style of g++... none checking for gcc... gcc checking whether the compiler supports GNU C... yes checking whether gcc accepts -g... yes checking for gcc option to enable C11 features... none needed checking whether gcc understands -c and -o together... yes checking dependency style of gcc... none checking how to run the C preprocessor... gcc -E checking for main in -lhts... no checking for main in -lpthread... no checking for main in -lz... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for unistd.h... (cached) yes checking for _Bool... yes checking for stdbool.h that conforms to C99 or later... yes checking for inline... inline checking for int16_t... yes checking for int32_t... yes checking for int8_t... yes checking for uint16_t... yes checking for uint32_t... yes checking for uint8_t... yes checking build system type... aarch64-unknown-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for GNU libc compatible malloc... no checking for GNU libc compatible realloc... no checking for memmove... no checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating tests/Makefile config.status: creating config.h config.status: executing depfiles commands dh_auto_build make -j12 make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make all-recursive make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making all in src make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -vUsing built-in specs. -I . -I .. -imultiarchg++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc1HHUQS.s COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) Using built-in specs. COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccYfmKWh.s COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccu59x3K.s Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc4stOT6.s COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cctetcoQ.s Using built-in specs. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Using built-in specs. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp#include "..." search starts here: -quiet -dumpbase#include <...> search starts here: call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall . -Wextra .. -Werror /usr/include/c++/15 -version /usr/include/aarch64-linux-gnu/c++/15 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. /usr/include/c++/15/backward -fstack-protector-strong /usr/lib/gcc/aarch64-linux-gnu/15/include -fstack-clash-protection /usr/local/include -fasynchronous-unwind-tables /usr/include/aarch64-linux-gnu -o /usr/include /tmp/ccMkNHR6.sEnd of search list. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccBvyuCo.s GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quietGNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, -dumpbaseGMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP primer_bed.cppGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccAa6J3C.s g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp Compiler executable checksum: Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd b91b1b20f7c8g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp 351096a2e5bafa9b64fd g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp Using built-in specs. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccVk2gve.s ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" Using built-in specs. #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) Using built-in specs. 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc3WWTs3.s Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'alignment.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ref_seq.o ref_seq.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o allele_functions.o /tmp/ccVk2gve.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc2DgRfG.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccBvyuCo.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'remove_reads_from_amplicon.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/cc1HHUQS.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_consensus_pileup.o /tmp/ccYfmKWh.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_consensus_pileup.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_masked_amplicons.o /tmp/cc13Sg2E.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccAa6J3C.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o interval_tree.o /tmp/cc2DgRfG.s COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'interval_tree.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o suffix_tree.o /tmp/cc4stOT6.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/ccMkNHR6.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/cc3WWTs3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccWmRhkT.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/cctetcoQ.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'trim_primer_quality.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cc9sEXxf.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'parse_gff.' g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/cccm5x7Z.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install make -j12 install DESTDIR=/build/reproducible-path/ivar-1.4.4\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' /usr/bin/install -c ivar '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making install in tests make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[3]: Nothing to be done for 'install-exec-am'. make[3]: Nothing to be done for 'install-data-am'. make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_install dh_installdocs dh_installchangelogs dh_installexamples dh_installman dh_perl dh_link dh_strip_nondeterminism dh_compress debian/rules execute_before_dh_fixperms make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0775 (rwxrwxr-x) to 0664 (rw-rw-r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux-aarch64.so.1 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux-aarch64.so.1.usr-is-merged dh_installdeb dh_gencontrol dh_md5sums dh_builddeb dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/B01_cleanup starting I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env I: removing directory /srv/workspace/pbuilder/1689819 and its subdirectories I: Current time: Sun Nov 2 02:58:28 +14 2025 I: pbuilder-time-stamp: 1762001908 + false + set +x Sat Nov 1 12:58:28 UTC 2025 I: Signing ./b2/ivar_1.4.4+dfsg-1_arm64.buildinfo as ivar_1.4.4+dfsg-1_arm64.buildinfo.asc Sat Nov 1 12:58:28 UTC 2025 I: Signed ./b2/ivar_1.4.4+dfsg-1_arm64.buildinfo as ./b2/ivar_1.4.4+dfsg-1_arm64.buildinfo.asc Sat Nov 1 12:58:28 UTC 2025 - build #2 for ivar/forky/arm64 on codethink04-arm64 done. Starting cleanup. All cleanup done. Sat Nov 1 12:58:28 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-Al3VVlEk, removing. /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq: total 168 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 12:57 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 12:58 b2 -rw-rw-r-- 1 jenkins jenkins 2206 Mar 1 2025 ivar_1.4.4+dfsg-1.dsc -rw------- 1 jenkins jenkins 155419 Nov 1 12:57 rbuildlog.z15iA0x /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1: total 3024 -rw-r--r-- 1 jenkins jenkins 151802 Nov 1 12:57 build.log -rw-r--r-- 1 jenkins jenkins 1695732 Nov 1 12:57 ivar-dbgsym_1.4.4+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 256212 Nov 1 12:57 ivar-doc_1.4.4+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 46024 Nov 1 12:57 ivar_1.4.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Nov 1 12:57 ivar_1.4.4+dfsg-1.dsc -rw-r--r-- 1 jenkins jenkins 7055 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7937 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.buildinfo.asc -rw-r--r-- 1 jenkins jenkins 1921 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 208688 Nov 1 12:57 ivar_1.4.4+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 1677 Nov 1 12:57 ivar_1.4.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 679232 Nov 1 12:57 ivar_1.4.4+dfsg.orig.tar.xz /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2: total 2964 -rw-rw-r-- 1 jenkins jenkins 126572 Nov 1 12:58 build.log -rw-r--r-- 1 jenkins jenkins 1695272 Nov 1 12:58 ivar-dbgsym_1.4.4+dfsg-1_arm64.deb -rw-r--r-- 1 jenkins jenkins 256212 Nov 1 12:58 ivar-doc_1.4.4+dfsg-1_all.deb -rw-r--r-- 1 jenkins jenkins 46024 Nov 1 12:58 ivar_1.4.4+dfsg-1.debian.tar.xz -rw-r--r-- 1 jenkins jenkins 2206 Nov 1 12:58 ivar_1.4.4+dfsg-1.dsc -rw-rw-r-- 1 jenkins jenkins 7063 Nov 1 12:58 ivar_1.4.4+dfsg-1_arm64.buildinfo -rw-rw-r-- 1 jenkins jenkins 7945 Nov 1 12:58 ivar_1.4.4+dfsg-1_arm64.buildinfo.asc -rw-rw-r-- 1 jenkins jenkins 1921 Nov 1 12:58 ivar_1.4.4+dfsg-1_arm64.changes -rw-r--r-- 1 jenkins jenkins 193276 Nov 1 12:58 ivar_1.4.4+dfsg-1_arm64.deb -rw-rw-r-- 1 jenkins jenkins 1677 Nov 1 12:58 ivar_1.4.4+dfsg-1_source.changes -rw-r--r-- 1 jenkins jenkins 679232 Nov 1 12:58 ivar_1.4.4+dfsg.orig.tar.xz Sat Nov 1 12:58:29 UTC 2025 I: Deleting $TMPDIR on codethink04-arm64.debian.net. Sat Nov 1 12:58:29 UTC 2025 I: ivar_1.4.4+dfsg-1_arm64.changes: Format: 1.8 Date: Sat, 01 Mar 2025 19:10:09 +0100 Source: ivar Binary: ivar ivar-dbgsym ivar-doc Architecture: arm64 all Version: 1.4.4+dfsg-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: ivar - functions broadly useful for viral amplicon-based sequencing ivar-doc - functions broadly useful for viral amplicon-based sequencing (doc Changes: ivar (1.4.4+dfsg-1) unstable; urgency=medium . * New upstream version 1.4.4+dfsg * privacy-breach.patch: refresh patch. * gcc-13.patch: delete: patch applied upstream. * gcc-13-2.patch: normalize Last-Update timestamp. * d/rules: fix breakage in .bed file permissions fixing. Checksums-Sha1: e39614ebcfb6d48302e3d3ac5e921b974802bdca 1695732 ivar-dbgsym_1.4.4+dfsg-1_arm64.deb cb88caaf9d7016e7b83373ad84fd0d0100dc060d 256212 ivar-doc_1.4.4+dfsg-1_all.deb 4cd7b427ea7eab17a0212c173f75bb55b87697b1 7055 ivar_1.4.4+dfsg-1_arm64.buildinfo 04d321dc14b35530fab5441c9041ca7ebdbc8f2f 208688 ivar_1.4.4+dfsg-1_arm64.deb Checksums-Sha256: eca4ad4228abdce84bf67cc9e0adec2a256d6b20aefe1b70afbb55c7bee2c5e4 1695732 ivar-dbgsym_1.4.4+dfsg-1_arm64.deb 289cc0cc61e9f94e821c87f5538b0b3f65b757efb7e844036ea01b3a444e0fc2 256212 ivar-doc_1.4.4+dfsg-1_all.deb bc0d53683fe9f7ff3d4ad523c33915163b15d7cc369e9311f7a815d5d55ab3aa 7055 ivar_1.4.4+dfsg-1_arm64.buildinfo db9f64f18ddb5940b5f78400fa5dd067d84b1947197410ebd77cc4371e66cc78 208688 ivar_1.4.4+dfsg-1_arm64.deb Files: 236b899572c24f50d4bc2e24bf82ef5c 1695732 debug optional ivar-dbgsym_1.4.4+dfsg-1_arm64.deb b7b92ad505bf84334eb13273bec92574 256212 doc optional ivar-doc_1.4.4+dfsg-1_all.deb 4b1fae39ad3d1b58e20943c9a958472d 7055 science optional ivar_1.4.4+dfsg-1_arm64.buildinfo 74d3e74112e91ca3df50c4c80dffc062 208688 science optional ivar_1.4.4+dfsg-1_arm64.deb removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/ivar_1.4.4+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/ivar_1.4.4+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/ivar_1.4.4+dfsg-1.build1.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/ivar_1.4.4+dfsg-1.build2.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/buildinfo/forky/arm64/ivar_1.4.4+dfsg-1_arm64.buildinfo' removed '/var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/ivar_1.4.4+dfsg-1.diff.gz' Diff of the two buildlogs: -- --- b1/build.log 2025-11-01 12:57:34.144622810 +0000 +++ b2/build.log 2025-11-01 12:58:29.056678322 +0000 @@ -1,6 +1,6 @@ I: pbuilder: network access will be disabled during build -I: Current time: Fri Dec 4 07:19:19 -12 2026 -I: pbuilder-time-stamp: 1796411959 +I: Current time: Sun Nov 2 02:57:37 +14 2025 +I: pbuilder-time-stamp: 1762001857 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/forky-reproducible-base.tgz] I: copying local configuration @@ -27,53 +27,85 @@ dpkg-source: info: applying gcc-13-2.patch I: Not using root during the build. I: Installing the build-deps -I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment starting +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D01_modify_environment starting +debug: Running on codethink04-arm64. +I: Changing host+domainname to test build reproducibility +I: Adding a custom variable just for the fun of it... +I: Changing /bin/sh to bash +'/bin/sh' -> '/bin/bash' +lrwxrwxrwx 1 root root 9 Nov 1 12:57 /bin/sh -> /bin/bash +I: Setting pbuilder2's login shell to /bin/bash +I: Setting pbuilder2's GECOS to second user,second room,second work-phone,second home-phone,second other +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D01_modify_environment finished +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D02_print_environment starting I: set - BUILDDIR='/build/reproducible-path' - BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' - BUILDUSERNAME='pbuilder1' - BUILD_ARCH='arm64' - DEBIAN_FRONTEND='noninteractive' - DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' - DISTRIBUTION='forky' - HOME='/root' - HOST_ARCH='arm64' + BASH=/bin/sh + BASHOPTS=checkwinsize:cmdhist:complete_fullquote:extquote:force_fignore:globasciiranges:globskipdots:hostcomplete:interactive_comments:patsub_replacement:progcomp:promptvars:sourcepath + BASH_ALIASES=() + BASH_ARGC=() + BASH_ARGV=() + BASH_CMDS=() + BASH_LINENO=([0]="12" [1]="0") + BASH_LOADABLES_PATH=/usr/local/lib/bash:/usr/lib/bash:/opt/local/lib/bash:/usr/pkg/lib/bash:/opt/pkg/lib/bash:. + BASH_SOURCE=([0]="/tmp/hooks/D02_print_environment" [1]="/tmp/hooks/D02_print_environment") + BASH_VERSINFO=([0]="5" [1]="3" [2]="3" [3]="1" [4]="release" [5]="aarch64-unknown-linux-gnu") + BASH_VERSION='5.3.3(1)-release' + BUILDDIR=/build/reproducible-path + BUILDUSERGECOS='second user,second room,second work-phone,second home-phone,second other' + BUILDUSERNAME=pbuilder2 + BUILD_ARCH=arm64 + DEBIAN_FRONTEND=noninteractive + DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 nocheck' + DIRSTACK=() + DISTRIBUTION=forky + EUID=0 + FUNCNAME=([0]="Echo" [1]="main") + GROUPS=() + HOME=/root + HOSTNAME=i-capture-the-hostname + HOSTTYPE=aarch64 + HOST_ARCH=arm64 IFS=' ' - INVOCATION_ID='aa6309b3329b4f3c89e3f40f9a71aeda' - LANG='C' - LANGUAGE='en_US:en' - LC_ALL='C' - MAIL='/var/mail/root' - OPTIND='1' - PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' - PBCURRENTCOMMANDLINEOPERATION='build' - PBUILDER_OPERATION='build' - PBUILDER_PKGDATADIR='/usr/share/pbuilder' - PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' - PBUILDER_SYSCONFDIR='/etc' - PPID='1854186' - PS1='# ' - PS2='> ' + INVOCATION_ID=fb3cc9eeee894b81b6e00eb46fbcb66a + LANG=C + LANGUAGE=nl_BE:nl + LC_ALL=C + MACHTYPE=aarch64-unknown-linux-gnu + MAIL=/var/mail/root + OPTERR=1 + OPTIND=1 + OSTYPE=linux-gnu + PATH=/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path + PBCURRENTCOMMANDLINEOPERATION=build + PBUILDER_OPERATION=build + PBUILDER_PKGDATADIR=/usr/share/pbuilder + PBUILDER_PKGLIBDIR=/usr/lib/pbuilder + PBUILDER_SYSCONFDIR=/etc + PIPESTATUS=([0]="0") + POSIXLY_CORRECT=y + PPID=1689819 PS4='+ ' - PWD='/' - SHELL='/bin/bash' - SHLVL='2' - SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_Tx87 --distribution forky --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1 --logfile b1/build.log ivar_1.4.4+dfsg-1.dsc' - SUDO_GID='109' - SUDO_HOME='/var/lib/jenkins' - SUDO_UID='104' - SUDO_USER='jenkins' - TERM='unknown' - TZ='/usr/share/zoneinfo/Etc/GMT+12' - USER='root' - _='/usr/bin/systemd-run' - http_proxy='http://192.168.101.4:3128' + PWD=/ + SHELL=/bin/bash + SHELLOPTS=braceexpand:errexit:hashall:interactive-comments:posix + SHLVL=3 + SUDO_COMMAND='/usr/bin/timeout -k 24.1h 24h /usr/bin/ionice -c 3 /usr/bin/nice -n 11 /usr/bin/unshare --uts -- /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/pbuilderrc_s4kp --distribution forky --hookdir /etc/pbuilder/rebuild-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/forky-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2 --logfile b2/build.log ivar_1.4.4+dfsg-1.dsc' + SUDO_GID=109 + SUDO_HOME=/var/lib/jenkins + SUDO_UID=104 + SUDO_USER=jenkins + TERM=unknown + TZ=/usr/share/zoneinfo/Etc/GMT-14 + UID=0 + USER=root + _='I: set' + http_proxy=http://192.168.101.4:3128 I: uname -a - Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux + Linux i-capture-the-hostname 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin - lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin -I: user script /srv/workspace/pbuilder/1854186/tmp/hooks/D02_print_environment finished + lrwxrwxrwx 1 root root 7 Aug 10 12:30 /bin -> usr/bin +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy @@ -86,7 +118,7 @@ Depends: debhelper-compat (= 13), libhts-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. -(Reading database ... 19964 files and directories currently installed.) +(Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: @@ -204,10 +236,10 @@ Get: 91 http://deb.debian.org/debian forky/main arm64 libhts3t64 arm64 1.22.1+ds2-1 [434 kB] Get: 92 http://deb.debian.org/debian forky/main arm64 liblzma-dev arm64 5.8.1-2 [344 kB] Get: 93 http://deb.debian.org/debian forky/main arm64 libhts-dev arm64 1.22.1+ds2-1 [1684 kB] -Fetched 30.8 MB in 0s (145 MB/s) +Fetched 30.8 MB in 0s (66.4 MB/s) Preconfiguring packages ... Selecting previously unselected package sensible-utils. -(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) +(Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19971 files and directories currently installed.) Preparing to unpack .../00-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. @@ -591,7 +623,11 @@ Building tag database... -> Finished parsing the build-deps I: Building the package -I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/A99_set_merged_usr starting +Not re-configuring usrmerge for forky +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/A99_set_merged_usr finished +hostname: Name or service not known +I: Running cd /build/reproducible-path/ivar-1.4.4+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games:/i/capture/the/path" HOME="/nonexistent/second-build" dpkg-genchanges -S > ../ivar_1.4.4+dfsg-1_source.changes dpkg-buildpackage: info: source package ivar dpkg-buildpackage: info: source version 1.4.4+dfsg-1 dpkg-buildpackage: info: source distribution unstable @@ -624,8 +660,8 @@ checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking xargs -n works... yes -checking whether UID '1111' is supported by ustar format... yes -checking whether GID '1111' is supported by ustar format... yes +checking whether UID '2222' is supported by ustar format... yes +checking whether GID '2222' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking for gawk... (cached) mawk checking for g++... g++ @@ -690,11 +726,8 @@ g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o ivar.o ivar.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_consensus_pileup.o call_consensus_pileup.cpp g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o alignment.o alignment.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp -Using built-in specs. Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o suffix_tree.o suffix_tree.cpp COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -704,8 +737,10 @@ Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tablesCOLLECT_GCC=g++ - -o /tmp/cce1rRM3.s + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -vUsing built-in specs. + -I . -I .. -imultiarchg++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o trim_primer_quality.o trim_primer_quality.cpp + aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ivar.cpp -quiet -dumpbase ivar.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc1HHUQS.s +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu @@ -713,9 +748,9 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc1r4ZM3.s Using built-in specs. +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_consensus_pileup.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_consensus_pileup.cpp -quiet -dumpbase call_consensus_pileup.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccYfmKWh.s COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -724,17 +759,12 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccu59x3K.s Using built-in specs. -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cch54W2O.s -COLLECT_GCC=g++ -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o remove_reads_from_amplicon.o remove_reads_from_amplicon.cpp Using built-in specs. -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --diCOLLECT_GCC=g++ +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu @@ -742,38 +772,39 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -sable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccM6M3S6.s -ror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 alignment.cpp -quiet -dumpbase alignment.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccHt9fzU.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 suffix_tree.cpp -quiet -dumpbase suffix_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc4stOT6.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 trim_primer_quality.cpp -quiet -dumpbase trim_primer_quality.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cctetcoQ.s +Using built-in specs. +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o call_variants.o call_variants.cpp GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - -GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) - compiled by GNU C version 15.2.0, GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" +GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) + compiled by GNU C version 15.2.0, ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" -Using built-in specs. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + #include "..." search starts here: #include <...> search starts here: . .. /usr/include/c++/15 +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward /usr/lib/gcc/aarch64-linux-gnu/15/include @@ -781,61 +812,16 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" -#include "..." search starts here: -#include <...> search starts here: -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-7) - . - .. - /usr/include/c++/15 - /usr/include/aarch64-linux-gnu/c++/15 - /usr/include/c++/15/backward ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" - /usr/lib/gcc/aarch64-linux-gnu/15/include - /usr/local/include - /usr/include/aarch64-linux-gnu - /usr/include -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plusEnd of search list. ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: #include <...> search starts here: - . - .. - /usr/include/c++/15 - -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp -quiet -dumpbase call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc33bs7D.s - /usr/include/aarch64-linux-gnu/c++/15 - /usr/include/c++/15/backward - /usr/lib/gcc/aarch64-linux-gnu/15/include - /usr/local/include - /usr/include/aarch64-linux-gnu - /usr/include -End of search list. -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 -ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" -ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" -ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" -#include "..." search starts here: -#include <...> search starts here: . .. /usr/include/c++/15 @@ -846,9 +832,7 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) - compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o primer_bed.o primer_bed.cpp GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" @@ -867,8 +851,11 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp Using built-in specs. +GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -877,9 +864,26 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-Using built-in specs. -security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cppCOLLECT_GCC=g++ +ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" +ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 call_variants.cpp#include "..." search starts here: + -quiet -dumpbase#include <...> search starts here: + call_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall . + -Wextra .. + -Werror /usr/include/c++/15 + -version /usr/include/aarch64-linux-gnu/c++/15 + -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. /usr/include/c++/15/backward + -fstack-protector-strong /usr/lib/gcc/aarch64-linux-gnu/15/include + -fstack-clash-protection /usr/local/include + -fasynchronous-unwind-tables /usr/include/aarch64-linux-gnu + -o /usr/include + /tmp/ccMkNHR6.sEnd of search list. + +COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: aarch64-linux-gnu @@ -887,11 +891,9 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) - -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -gCOLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc7kd4hr.s - -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccTyhELC.s -GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) - compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 remove_reads_from_amplicon.cpp -quiet -dumpbase remove_reads_from_amplicon.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccBvyuCo.s +GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" @@ -911,11 +913,7 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -Compiler executable checksum: Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd -b91b1b20f7c8351096a2e5bafa9b64fd -Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. -Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -925,7 +923,17 @@ Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quiet -dumpbase primer_bed.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccrKgPsg.s + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 primer_bed.cpp -quietGNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) + compiled by GNU C version 15.2.0, -dumpbaseGMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + + primer_bed.cppGGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 + -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccAa6J3C.s +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o allele_functions.o allele_functions.cpp +Compiler executable checksum: Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd +b91b1b20f7c8g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_masked_amplicons.o get_masked_amplicons.cpp +351096a2e5bafa9b64fd +g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp +Using built-in specs. GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP @@ -947,16 +955,19 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd -GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) - compiled by GNU C version 15.2.0, GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) - compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP - -GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 15.2.0 (Debian 15.2.0-7) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 allele_functions.cpp -quiet -dumpbase allele_functions.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccVk2gve.s ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" -Compiler executable checksum: b91b1b20f7c83510ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" -96a2e5bafa9b64fdignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" - +ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" #include "..." search starts here: @@ -966,13 +977,14 @@ /usr/include/c++/15 /usr/include/aarch64-linux-gnu/c++/15 /usr/include/c++/15/backward +Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd /usr/lib/gcc/aarch64-linux-gnu/15/include /usr/local/include /usr/include/aarch64-linux-gnu /usr/include End of search list. -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o get_common_variants.o get_common_variants.cpp -GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP +GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" @@ -980,6 +992,7 @@ ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" +Using built-in specs. #include "..." search starts here: #include <...> search starts here: . @@ -992,7 +1005,6 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -1001,12 +1013,22 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) +Using built-in specs. COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccqWmwJN.s + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_masked_amplicons.cpp -quiet -dumpbase get_masked_amplicons.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc13Sg2E.s g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o parse_gff.o parse_gff.cpp +COLLECT_GCC=g++ +OFFLOAD_TARGET_NAMES=nvptx-none +OFFLOAD_TARGET_DEFAULT=1 +Target: aarch64-linux-gnu +Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 +Thread model: posix +Supported LTO compression algorithms: zlib zstd +gcc version 15.2.0 (Debian 15.2.0-7) +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc3WWTs3.s Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Using built-in specs. -Using built-in specs. COLLECT_GCC=g++ OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 @@ -1015,8 +1037,30 @@ Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 get_common_variants.cpp -quiet -dumpbase get_common_variants.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccjTi3D7.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc9sEXxf.s +Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd +GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) + compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP + +GGC heuristics: --param ggc-min-expand=100 --param ggc-min-heapsize=131072 +ignoring duplicate directory "/usr/include/aarch64-linux-gnu/c++/15" +ignoring nonexistent directory "/usr/local/include/aarch64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed/aarch64-linux-gnu" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/include-fixed" +ignoring nonexistent directory "/usr/lib/gcc/aarch64-linux-gnu/15/../../../../aarch64-linux-gnu/include" +#include "..." search starts here: +#include <...> search starts here: + . + .. + /usr/include/c++/15 + /usr/include/aarch64-linux-gnu/c++/15 + /usr/include/c++/15/backward + /usr/lib/gcc/aarch64-linux-gnu/15/include + /usr/local/include + /usr/include/aarch64-linux-gnu + /usr/include +End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP @@ -1039,16 +1083,7 @@ /usr/include/aarch64-linux-gnu /usr/include End of search list. -COLLECT_GCC=g++ -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-7) -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 parse_gff.cpp -quiet -dumpbase parse_gff.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc9jnPTc.s +Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP @@ -1095,8 +1130,9 @@ Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd +Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'alignment.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o alignment.o /tmp/ccHt9fzU.s + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o alignment.o /tmp/ccu59x3K.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ @@ -1112,7 +1148,7 @@ Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccT8MnrJ.s + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 ref_seq.cpp -quiet -dumpbase ref_seq.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccWmRhkT.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP @@ -1135,15 +1171,12 @@ /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o remove_reads_from_amplicon.o /tmp/ccTyhELC.s -GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_masked_amplicons.o /tmp/ccqWmwJN.s +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o allele_functions.o /tmp/ccVk2gve.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'remove_reads_from_amplicon.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'remove_reads_from_amplicon.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'allele_functions.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'allele_functions.' g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -c -o interval_tree.o interval_tree.cpp Using built-in specs. COLLECT_GCC=g++ @@ -1155,7 +1188,7 @@ Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-7) COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'interval_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/ccRBhjhz.s + /usr/libexec/gcc/aarch64-linux-gnu/15/cc1plus -quiet -v -I . -I .. -imultiarch aarch64-linux-gnu -D_GNU_SOURCE -D HAVE_CONFIG_H -D _FORTIFY_SOURCE=2 interval_tree.cpp -quiet -dumpbase interval_tree.cpp -dumpbase-ext .cpp -mbranch-protection=standard -mlittle-endian -mabi=lp64 -g -g -O2 -Wdate-time -Wformat=1 -Werror=format-security -Wall -Wextra -Werror -version -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -fasynchronous-unwind-tables -o /tmp/cc2DgRfG.s GNU C++17 (Debian 15.2.0-7) version 15.2.0 (aarch64-linux-gnu) compiled by GNU C version 15.2.0, GMP version 6.3.0, MPFR version 4.2.2, MPC version 1.3.1, isl version isl-0.27-GMP @@ -1178,71 +1211,74 @@ /usr/include End of search list. Compiler executable checksum: b91b1b20f7c8351096a2e5bafa9b64fd +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_masked_amplicons.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_masked_amplicons.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' 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'-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o suffix_tree.o /tmp/cc4stOT6.s +GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o call_variants.o /tmp/ccMkNHR6.s +GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'suffix_tree.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'suffix_tree.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ivar.o /tmp/cce1rRM3.s -GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ivar.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' +COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'call_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'call_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/ccjTi3D7.s + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o get_common_variants.o /tmp/cc3WWTs3.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'get_common_variants.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'get_common_variants.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccT8MnrJ.s + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o ref_seq.o /tmp/ccWmRhkT.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'ref_seq.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ref_seq.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/ccM6M3S6.s + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o trim_primer_quality.o /tmp/cctetcoQ.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'trim_primer_quality.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'trim_primer_quality.' -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o primer_bed.o /tmp/ccrKgPsg.s -GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 -COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'primer_bed.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'primer_bed.' COLLECT_GCC_OPTIONS='-D' 'HAVE_CONFIG_H' '-I' '.' '-I' '..' '-Wdate-time' '-D' '_FORTIFY_SOURCE=2' '-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-c' '-o' 'parse_gff.o' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' - /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cc9jnPTc.s + /usr/bin/aarch64-linux-gnu-as -v -I . -I .. --gdwarf-5 -EL -mabi=lp64 -o parse_gff.o /tmp/cc9sEXxf.s GNU assembler version 2.45 (aarch64-linux-gnu) using BFD version (GNU Binutils for Debian) 2.45 COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ @@ -1261,7 +1297,7 @@ COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccwTT4Gk.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o + /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/cccm5x7Z.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' Making all in tests @@ -1272,115 +1308,6 @@ make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' - debian/rules override_dh_auto_test -make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' -dh_auto_test --no-parallel - make -j1 check TESTSUITEFLAGS="-j1 --verbose" VERBOSE=1 -make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' -Making check in src -make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' -make[3]: Nothing to be done for 'check'. -make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' -Making check in tests -make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make check_primer_trim check_trim check_quality_trim check_consensus check_allele_depth check_consensus_threshold check_consensus_min_depth check_consensus_seq_id check_primer_bed check_getmasked check_removereads check_variants check_common_variants check_unpaired_trim check_primer_trim_edge_cases check_isize_trim check_interval_tree check_amplicon_search check_consensus_min_insert_threshold check_quality_trim_unpaired check_strand_variants -make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall 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-fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_trim test_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim.o test_quality_trim.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim test_quality_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o 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-DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_depth.o test_consensus_min_depth.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_depth test_consensus_min_depth.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall 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-Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_variants test_variants.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_common_variants.o test_common_variants.cpp -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o ../src/get_common_variants.o ../src/get_common_variants.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_common_variants test_common_variants.o ../src/get_common_variants.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_unpaired_trim.o test_unpaired_trim.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_unpaired_trim test_unpaired_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_primer_trim_edge_cases.o test_primer_trim_edge_cases.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_primer_trim_edge_cases test_primer_trim_edge_cases.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_isize_trim.o test_isize_trim.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_isize_trim test_isize_trim.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_interval_tree.o test_interval_tree.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_interval_tree test_interval_tree.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_amplicon_search.o test_amplicon_search.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_amplicon_search test_amplicon_search.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_consensus_min_insert_threshold.o test_consensus_min_insert_threshold.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_consensus_min_insert_threshold test_consensus_min_insert_threshold.o ../src/call_consensus_pileup.o ../src/allele_functions.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_quality_trim_unpaired.o test_quality_trim_unpaired.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_quality_trim_unpaired test_quality_trim_unpaired.o ../src/trim_primer_quality.o ../src/primer_bed.o ../src/interval_tree.o -lhts -lz -lpthread -g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -c -o test_variants_reverse_strand.o test_variants_reverse_strand.cpp -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -g -Wall -Wextra -Werror -Wno-unused-but-set-variable -Wl,-z,relro -Wl,-z,now -o check_strand_variants test_variants_reverse_strand.o ../src/call_variants.o ../src/allele_functions.o ../src/parse_gff.o ../src/ref_seq.o -lhts -lz -lpthread -make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make check-TESTS -make[4]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make[5]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -PASS: check_primer_trim -PASS: check_trim -PASS: check_quality_trim -PASS: check_consensus -PASS: check_allele_depth -PASS: check_consensus_threshold -PASS: check_consensus_min_depth -PASS: check_consensus_seq_id -PASS: check_primer_bed -PASS: check_getmasked -PASS: check_removereads -PASS: check_variants -PASS: check_common_variants -PASS: check_unpaired_trim -PASS: check_primer_trim_edge_cases -PASS: check_isize_trim -PASS: check_interval_tree -PASS: check_amplicon_search -PASS: check_consensus_min_insert_threshold -PASS: check_quality_trim_unpaired -PASS: check_strand_variants -============================================================================ -Testsuite summary for ivar 1.4.4 -============================================================================ -# TOTAL: 21 -# PASS: 21 -# SKIP: 0 -# XFAIL: 0 -# FAIL: 0 -# XPASS: 0 -# ERROR: 0 -============================================================================ -make[5]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make[4]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg/tests' -make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' -make[3]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' -make[2]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' -make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' create-stamp debian/debhelper-build-stamp dh_prep dh_auto_install @@ -1388,22 +1315,6 @@ make[1]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg' Making install in src make[2]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' -g++ -g -O2 -ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -v -g -Wall -Wextra -Werror -Wl,-z,relro -Wl,-z,now -o ivar ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -Using built-in specs. -COLLECT_GCC=g++ -COLLECT_LTO_WRAPPER=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -OFFLOAD_TARGET_NAMES=nvptx-none -OFFLOAD_TARGET_DEFAULT=1 -Target: aarch64-linux-gnu -Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-7' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=aarch64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-libquadmath --disable-libquadmath-support --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --enable-fix-cortex-a53-843419 --disable-werror --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=aarch64-linux-gnu --host=aarch64-linux-gnu --target=aarch64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=4 -Thread model: posix -Supported LTO compression algorithms: zlib zstd -gcc version 15.2.0 (Debian 15.2.0-7) -COMPILER_PATH=/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/15/:/usr/libexec/gcc/aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/ -LIBRARY_PATH=/usr/lib/gcc/aarch64-linux-gnu/15/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib/:/lib/aarch64-linux-gnu/:/lib/../lib/:/usr/lib/aarch64-linux-gnu/:/usr/lib/../lib/:/usr/lib/gcc/aarch64-linux-gnu/15/../../../:/lib/:/usr/lib/ -COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' - /usr/libexec/gcc/aarch64-linux-gnu/15/collect2 -plugin /usr/libexec/gcc/aarch64-linux-gnu/15/liblto_plugin.so -plugin-opt=/usr/libexec/gcc/aarch64-linux-gnu/15/lto-wrapper -plugin-opt=-fresolution=/tmp/ccBFKHzg.res -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc -plugin-opt=-pass-through=-lc -plugin-opt=-pass-through=-lgcc_s -plugin-opt=-pass-through=-lgcc --build-id --eh-frame-hdr --hash-style=gnu --as-needed -dynamic-linker /lib/ld-linux-aarch64.so.1 -X -EL -maarch64linux --fix-cortex-a53-843419 -pie -o ivar /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/Scrt1.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crti.o /usr/lib/gcc/aarch64-linux-gnu/15/crtbeginS.o -L/usr/lib/gcc/aarch64-linux-gnu/15 -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu -L/usr/lib/gcc/aarch64-linux-gnu/15/../../../../lib -L/lib/aarch64-linux-gnu -L/lib/../lib -L/usr/lib/aarch64-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc/aarch64-linux-gnu/15/../../.. -L/lib -L/usr/lib -z relro -z now ivar.o call_consensus_pileup.o alignment.o suffix_tree.o trim_primer_quality.o remove_reads_from_amplicon.o call_variants.o primer_bed.o allele_functions.o get_masked_amplicons.o get_common_variants.o parse_gff.o ref_seq.o interval_tree.o -lhts -lz -lpthread -lhts -lz -lpthread -lstdc++ -lm -lgcc_s -lgcc -lc -lgcc_s -lgcc /usr/lib/gcc/aarch64-linux-gnu/15/crtendS.o /usr/lib/gcc/aarch64-linux-gnu/15/../../../aarch64-linux-gnu/crtn.o -COLLECT_GCC_OPTIONS='-g' '-O2' '-ffile-prefix-map=/build/reproducible-path/ivar-1.4.4+dfsg=.' '-fstack-protector-strong' '-fstack-clash-protection' '-Wformat=1' '-Werror=format-security' '-mbranch-protection=standard' '-v' '-g' '-Wall' '-Wextra' '-Werror' '-o' 'ivar' '-foffload-options=-l_GCC_stdc++' '-foffload-options=-l_GCC_m' '-shared-libgcc' '-mlittle-endian' '-mabi=lp64' '-dumpdir' 'ivar.' make[3]: Entering directory '/build/reproducible-path/ivar-1.4.4+dfsg/src' make[3]: Nothing to be done for 'install-data-am'. /usr/bin/mkdir -p '/build/reproducible-path/ivar-1.4.4+dfsg/debian/tmp/usr/bin' @@ -1438,7 +1349,7 @@ if [ -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed ] \ ; then chmod -v -x /build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed \ ; fi -mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0755 (rwxr-xr-x) to 0644 (rw-r--r--) +mode of '/build/reproducible-path/ivar-1.4.4+dfsg/debian/ivar/usr/share/doc/ivar/examples/data/primer_pair_test/test_primer_pair.bed' changed from 0775 (rwxrwxr-x) to 0664 (rw-rw-r--) make[1]: Leaving directory '/build/reproducible-path/ivar-1.4.4+dfsg' dh_fixperms dh_missing @@ -1454,9 +1365,9 @@ dh_gencontrol dh_md5sums dh_builddeb +dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-dbgsym' in '../ivar-dbgsym_1.4.4+dfsg-1_arm64.deb'. dpkg-deb: building package 'ivar-doc' in '../ivar-doc_1.4.4+dfsg-1_all.deb'. -dpkg-deb: building package 'ivar' in '../ivar_1.4.4+dfsg-1_arm64.deb'. dpkg-genbuildinfo --build=binary -O../ivar_1.4.4+dfsg-1_arm64.buildinfo dpkg-genchanges --build=binary -O../ivar_1.4.4+dfsg-1_arm64.changes dpkg-genchanges: info: binary-only upload (no source code included) @@ -1464,12 +1375,14 @@ dpkg-buildpackage: info: binary-only upload (no source included) dpkg-genchanges: info: including full source code in upload I: copying local configuration +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/B01_cleanup starting +I: user script /srv/workspace/pbuilder/1689819/tmp/hooks/B01_cleanup finished I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem I: cleaning the build env -I: removing directory /srv/workspace/pbuilder/1854186 and its subdirectories -I: Current time: Fri Dec 4 07:20:33 -12 2026 -I: pbuilder-time-stamp: 1796412033 +I: removing directory /srv/workspace/pbuilder/1689819 and its subdirectories +I: Current time: Sun Nov 2 02:58:28 +14 2025 +I: pbuilder-time-stamp: 1762001908 Compressing the 2nd log... /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/ivar_1.4.4+dfsg-1.diff: 91.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/ivar_1.4.4+dfsg-1.diff.gz b2/build.log: 89.3% -- replaced with stdout Compressing the 1st log... b1/build.log: 90.9% -- replaced with stdout Sat Nov 1 12:58:30 UTC 2025 I: diffoscope 307 will be used to compare the two builds: ++ date -u +%s + DIFFOSCOPE_STAMP=/var/log/reproducible-builds/diffoscope_stamp_ivar_forky_arm64_1762001910 + touch /var/log/reproducible-builds/diffoscope_stamp_ivar_forky_arm64_1762001910 + RESULT=0 + systemd-run '--description=diffoscope on ivar/1.4.4+dfsg-1 in forky/arm64' --slice=rb-build-diffoscope.slice -u rb-diffoscope-arm64_4-103415 '--property=SuccessExitStatus=1 124' --user --send-sighup --pipe --wait -E TMPDIR timeout 155m nice schroot --directory /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq --run-session -c jenkins-reproducible-forky-diffoscope-46f050db-5e43-423a-a43e-f89d0f8e11b7 -- sh -c 'export TMPDIR=/srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/dbd-tmp-MPzvYF1 ; timeout 150m diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1/ivar_1.4.4+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2/ivar_1.4.4+dfsg-1_arm64.changes' + false + set +x Running as unit: rb-diffoscope-arm64_4-103415.service; invocation ID: 1c08aa3af1bc4fdabadb9780334065fa # Profiling output for: /usr/bin/diffoscope --timeout 7200 --html /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.html --text /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.txt --json /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/ivar_1.4.4+dfsg-1.diffoscope.json --profile=- /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b1/ivar_1.4.4+dfsg-1_arm64.changes /srv/reproducible-results/rbuild-debian/r-b-build.y92n2TXq/b2/ivar_1.4.4+dfsg-1_arm64.changes ## close_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 8 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## command (total time: 45.052s) 21.520s 1033 calls readelf 19.972s 118 calls diff 3.078s 165 calls objdump 0.256s 2 calls objcopy 0.172s 20 calls xz 0.051s 22 calls strings 0.002s 1 call cmp 0.002s 1 call cmp (external) 0.001s 14 calls cmp (internal) ## compare_files (cumulative) (total time: 140.333s) 27.246s 1 call abc.DotChangesFile 27.233s 2 calls abc.DebFile 27.201s 4 calls abc.XzFile 27.042s 2 calls abc.DebDataTarFile 26.831s 2 calls abc.ElfFile 4.059s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.370s 35 calls diffoscope.comparators.elf.ElfSection 0.269s 3 calls diffoscope.comparators.elf.ElfStringSection 0.051s 2 calls abc.TarFile 0.017s 2 calls abc.TextFile 0.007s 2 calls abc.Md5sumsFile 0.006s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## container_extract (total time: 0.224s) 0.172s 20 calls diffoscope.comparators.xz.XzContainer 0.029s 116 calls diffoscope.comparators.deb.DebTarContainer 0.016s 24 calls diffoscope.comparators.deb.DebContainer 0.007s 18 calls diffoscope.comparators.tar.TarContainer ## diff (total time: 0.145s) 0.145s 403 calls linediff ## has_same_content_as (total time: 0.004s) 0.002s 3 calls abc.DebFile 0.000s 4 calls abc.TextFile 0.000s 4 calls abc.Md5sumsFile 0.000s 2 calls abc.ElfFile 0.000s 35 calls diffoscope.comparators.elf.ElfSection 0.000s 2 calls abc.TarFile 0.000s 2 calls abc.DebDataTarFile 0.000s 1 call diffoscope.comparators.binary.FilesystemFile 0.000s 4 calls abc.XzFile 0.000s 1 call abc.DotChangesFile 0.000s 1 call diffoscope.comparators.utils.libarchive.LibarchiveSymlink 0.000s 8 calls diffoscope.comparators.elf.ElfCodeSection 0.000s 3 calls diffoscope.comparators.elf.ElfStringSection 0.000s 1 call diffoscope.comparators.elf.MonkeyPatchedElfSection ## main (total time: 30.252s) 30.250s 2 calls outputs 0.001s 1 call cleanup ## open_archive (total time: 0.000s) 0.000s 20 calls diffoscope.comparators.xz.XzContainer 0.000s 14 calls diffoscope.comparators.tar.TarContainer 0.000s 10 calls diffoscope.comparators.deb.DebContainer 0.000s 6 calls diffoscope.comparators.deb.DebTarContainer ## output (total time: 2.734s) 1.106s 1 call html 0.964s 1 call text 0.664s 1 call json ## recognizes (total time: 0.205s) 0.090s 914 calls diffoscope.comparators.utils.archive.ArchiveMember 0.080s 1828 calls diffoscope.comparators.utils.libarchive.LibarchiveMember 0.025s 12 calls diffoscope.comparators.binary.FilesystemFile 0.010s 324 calls diffoscope.comparators.debian.DebControlMember ## specialize (total time: 0.316s) 0.316s 70 calls specialize Finished with result: success Main processes terminated with: code=exited, status=1/FAILURE Service runtime: 30.510s CPU time consumed: 39.844s Memory peak: 890.2M (swap: 0B) Sat Nov 1 12:59:02 UTC 2025 W: Diffoscope claims the build is reproducible, but there is a diffoscope file. Please investigate. Sat Nov 1 12:59:02 UTC 2025 E: ivar failed to build reproducibly in forky on arm64. Sat Nov 1 12:59:29 UTC 2025 I: https://tests.reproducible-builds.org/debian/forky/arm64/ivar : reproducible ➤ FTBR INSERT 0 1 INSERT 0 1 DELETE 1 [2025-11-01 12:59:30] INFO: Starting at 2025-11-01 12:59:30.206692 [2025-11-01 12:59:30] INFO: Generating the pages of 1 package(s) [2025-11-01 12:59:30] CRITICAL: https://tests.reproducible-builds.org/debian/forky/arm64/ivar didn't produce a buildlog, even though it has been built. [2025-11-01 12:59:30] INFO: Finished at 2025-11-01 12:59:30.491949, took: 0:00:00.285263 Sat Nov 1 12:59:30 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/forky/arm64/ivar.html [2025-11-01 12:59:30] INFO: Starting at 2025-11-01 12:59:30.817690 [2025-11-01 12:59:30] INFO: Scheduling packages in arm64/forky [2025-11-01 12:59:30] INFO: jenkins scheduled in forky/arm64, reason: 'reproducible ➤ FTBR': ivar Transport error: 500 Can't connect to kgb.tincho.org:9418 (Name or service not known) [2025-11-01 12:59:31] INFO: Finished at 2025-11-01 12:59:31.302263, took: 0:00:00.484580 Sat Nov 1 12:59:31 UTC 2025 I: Removing signed ivar_1.4.4+dfsg-1_arm64.buildinfo.asc files: removed './b1/ivar_1.4.4+dfsg-1_arm64.buildinfo.asc' removed './b2/ivar_1.4.4+dfsg-1_arm64.buildinfo.asc' 1762001971 arm64 forky ivar Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/ivar_1.4.4+dfsg-1.rbuild.log: 88.9% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/forky/arm64/ivar_1.4.4+dfsg-1.rbuild.log.gz [2025-11-01 12:59:31] INFO: Starting at 2025-11-01 12:59:31.644065 [2025-11-01 12:59:31] INFO: Generating the pages of 1 package(s) [2025-11-01 12:59:31] INFO: Finished at 2025-11-01 12:59:31.915797, took: 0:00:00.271738 All cleanup done. Sat Nov 1 12:59:32 UTC 2025 - total duration: 0h 3m 21s. Sat Nov 1 12:59:32 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-j7lYS9zg, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 3min 23.397s CPU time consumed: 31.114s Memory peak: 209.5M (swap: 0B)