Running as unit: rb-build-arm64_4-103465.service; invocation ID: 367f02c21fef4c248e273d4befa44f22 ==================================================================================== Sat Nov 1 15:03:21 UTC 2025 - running /srv/jenkins/bin/reproducible_build.sh (for job reproducible_builder_arm64_4) on jenkins, called using "codethink03-arm64 codethink04-arm64" as arguments. Sat Nov 1 15:03:21 UTC 2025 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-kIY0GE4T" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Sat Nov 1 15:03:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Nov 1 15:03:22 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-FdctTk' Sat Nov 1 15:03:22 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink04-arm64.debian.net is marked as down. Sat Nov 1 15:03:22 UTC 2025 - checking via ssh if codethink04-arm64.debian.net is up. removed '/tmp/read-only-fs-test-TLwBZ0' ok, let's check if seqan2 is building anywhere yet… ok, seqan2 is not building anywhere… UPDATE 1 ============================================================================= Initialising reproducibly build of seqan2 in experimental on arm64 on jenkins now. 1st build will be done on codethink03-arm64.debian.net. 2nd build will be done on codethink04-arm64.debian.net. ============================================================================= Sat Nov 1 15:03:34 UTC 2025 I: starting to build seqan2/experimental/arm64 on jenkins on '2025-11-01 15:03' Sat Nov 1 15:03:34 UTC 2025 I: The jenkins build log is/was available at https://jenkins.debian.net/userContent/reproducible/debian/build_service/arm64_4/103465/console.log 1762009414 arm64 experimental seqan2 Sat Nov 1 15:03:34 UTC 2025 I: Downloading source for experimental/seqan2=2.5.0~rc3+dfsg-1 --2025-11-01 15:03:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/seqan2/seqan2_2.5.0%7erc3%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2285 (2.2K) [text/prs.lines.tag] Saving to: ‘seqan2_2.5.0~rc3+dfsg-1.dsc’ 0K .. 100% 276M=0s 2025-11-01 15:03:35 (276 MB/s) - ‘seqan2_2.5.0~rc3+dfsg-1.dsc’ saved [2285/2285] --2025-11-01 15:03:35-- http://cdn-fastly.deb.debian.org/debian/pool/main/s/seqan2/seqan2_2.5.0%7erc3%2bdfsg-1.dsc Connecting to 46.16.76.132:3128... connected. Proxy request sent, awaiting response... 200 OK Length: 2285 (2.2K) [text/prs.lines.tag] Saving to: ‘seqan2_2.5.0~rc3+dfsg-1.dsc’ 0K .. 100% 276M=0s 2025-11-01 15:03:35 (276 MB/s) - ‘seqan2_2.5.0~rc3+dfsg-1.dsc’ saved [2285/2285] Sat Nov 1 15:03:35 UTC 2025 I: seqan2_2.5.0~rc3+dfsg-1.dsc -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: seqan2 Binary: seqan-apps, libseqan2-dev Architecture: any all Version: 2.5.0~rc3+dfsg-1 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Michael R. Crusoe , Kevin Murray Homepage: https://www.seqan.de/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/seqan2 Vcs-Git: https://salsa.debian.org/med-team/seqan2.git Testsuite: autopkgtest Testsuite-Triggers: @builddeps@, libbam-dev, libboost-dev, libbz2-dev, zlib1g-dev Build-Depends: debhelper-compat (= 13), python3 , cmake Build-Depends-Arch: zlib1g-dev, libbz2-dev, libboost-dev Package-List: libseqan2-dev deb libdevel optional arch=all seqan-apps deb science optional arch=any Checksums-Sha1: 6515e3a07829fe67a5c41eeabc847b817c3dafe0 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz ddaf68f642e207de2d6562b9fe917e8a4ddb20fa 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz Checksums-Sha256: 557039f2cad2e17a322f45fcf993384aa9150e06635f1aba62a2eba9ec38a811 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz fff8ff33bd77ae1372ae934dde627140ae20a0028ff25014b2f43a436f81ed63 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz Files: cb775f6d511344c63fd6e02c359afe54 84922684 seqan2_2.5.0~rc3+dfsg.orig.tar.xz 913947673f5ec63f74ca42a74a937016 15152 seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEck1gkzcRPHEFUNdHPCZ2P2xn5uIFAmdBFAsACgkQPCZ2P2xn 5uIpThAAyzOfjsINe5eCCXMKqJ0JqUUUySDj1ysPhuHXG19p3twAl+0PHMif5BTT hN7hmGqJNluY5KqY9X/cJQ3cqXqBqrtqqffymowieXsXC4uBg1bSxVscrtl6nAj4 k6J5/U7UhhIdXI2nyCjymS7J9WSyYUdoHas9xgX58K/CDSZL7NB+OkUaL22ccBlm IpgdfkZDCNsO/jpT4l/QFDxW4scJvdanOP2NV+mbzPn8rvH38rpdDzuq6Qgc99GS bgkDDx03gIbJi4/PvPLJ9iiQKajtGtL2HHqe9hQ4h5o3T3Ke6eIE/voyfnYHH+f9 XYK2FbfUhkLvupXvwExMePeX7PQXSSwi18IcNOS2JhTe6YmbXy+Tx18AhrepjZmz npHp4JLhpK2kNXL2Y2LYrPQL3u/7nhQ4YMevxs+CkMuBBmq01zISSP4hDffAXW5z zC+C/4gNNO/IhFEcEyKSw0/1Btm81cYwx1EtBUqt7XGz+NaJ6jlPMs259Zl6elLs mejb3hQ6Cwpyl7S1tL0c7wk3OTg3QbtqGBuV0OaLpJ7joZQUWo/6Xh/o859OOo29 8xKXKFRo+E28pGBm0zvwReJN/YSk/sFKOfJnaX9osQUzykbi2KzmyrYT18Rm/TiS 8i6MTctcXngEuAGVudw2/zO+Y4lTaSRaxvD8tABxcgPq/nj07Uk= =xipQ -----END PGP SIGNATURE----- Sat Nov 1 15:03:35 UTC 2025 I: Checking whether the package is not for us Sat Nov 1 15:03:35 UTC 2025 I: Starting 1st build on remote node codethink03-arm64.debian.net. Sat Nov 1 15:03:35 UTC 2025 I: Preparing to do remote build '1' on codethink03-arm64.debian.net. Sat Nov 1 15:03:35 UTC 2025 - checking /var/lib/jenkins/offline_nodes if codethink03-arm64.debian.net is marked as down. Sat Nov 1 15:03:35 UTC 2025 - checking via ssh if codethink03-arm64.debian.net is up. removed '/tmp/read-only-fs-test-HfVgdi' ==================================================================================== Fri Dec 4 21:26:36 UTC 2026 - running /srv/jenkins/bin/reproducible_build.sh (for job /srv/jenkins/bin/reproducible_build.sh) on codethink03-arm64, called using "1 seqan2 experimental /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA 2.5.0~rc3+dfsg-1" as arguments. Fri Dec 4 21:26:36 UTC 2026 - actually running "reproducible_build.sh" (md5sum bcb6fe1b50cf4e8eedacd0971a9eb63f) as "/tmp/jenkins-script-TRiD5tqa" $ git clone https://salsa.debian.org/qa/jenkins.debian.net.git ; more CONTRIBUTING Fri Dec 4 21:26:36 UTC 2026 I: Downloading source for experimental/seqan2=2.5.0~rc3+dfsg-1 Reading package lists... NOTICE: 'seqan2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan2.git Please use: git clone https://salsa.debian.org/med-team/seqan2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.9 MB of source archives. Get:1 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (dsc) [2285 B] Get:2 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (tar) [84.9 MB] Get:3 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (diff) [15.2 kB] Fetched 84.9 MB in 4s (22.2 MB/s) Download complete and in download only mode Reading package lists... NOTICE: 'seqan2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/seqan2.git Please use: git clone https://salsa.debian.org/med-team/seqan2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 84.9 MB of source archives. Get:1 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (dsc) [2285 B] Get:2 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (tar) [84.9 MB] Get:3 http://deb.debian.org/debian experimental/main seqan2 2.5.0~rc3+dfsg-1 (diff) [15.2 kB] Fetched 84.9 MB in 4s (22.2 MB/s) Download complete and in download only mode ============================================================================= Building seqan2 in experimental on arm64 on codethink03-arm64 now. Date: Fri Dec 4 21:26:40 GMT 2026 Date UTC: Fri Dec 4 21:26:40 UTC 2026 ============================================================================= W: /root/.pbuilderrc does not exist I: Logging to b1/build.log I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 09:26:41 -12 2026 I: pbuilder-time-stamp: 1796419601 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan2_2.5.0~rc3+dfsg-1.dsc] I: copying [./seqan2_2.5.0~rc3+dfsg.orig.tar.xz] I: copying [./seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan2_2.5.0~rc3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting seqan2 in seqan2-2.5.0~rc3+dfsg dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg.orig.tar.xz dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-some-apps-on-some-archs dpkg-source: info: applying tweak_readmes dpkg-source: info: applying 0001-FIX-Typo.patch dpkg-source: info: applying 0002-FIX-version-check-test-failing-if-program-is-missing.patch dpkg-source: info: applying 0003-INFRA-Strip-build-paths-from-apps.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63556/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='4201f99e55dc43c38ac897005e1fb6df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63556' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/pbuilderrc_EWD0 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/b1 --logfile b1/build.log seqan2_2.5.0~rc3+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/63556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, cmake, zlib1g-dev, libbz2-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 51.9 MB of archives. After unpacking 343 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 gcc-14-base arm64 14.3.0-10 [52.4 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-10 [2366 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-10 [2568 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 51.9 MB in 1s (81.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... 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Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... 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Preparing to unpack .../66-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:arm64 (14.3.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 4 21:27:19 UTC 2026. Universal Time is now: Fri Dec 4 21:27:19 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libgcc-14-dev:arm64 (14.3.0-10) ... Setting up libstdc++-14-dev:arm64 (14.3.0-10) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan2_2.5.0~rc3+dfsg-1_source.changes dpkg-buildpackage: info: source package seqan2 dpkg-buildpackage: info: source version 2.5.0~rc3+dfsg-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_clean find . -type f -name "*.pyc" -delete if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars debian/files rm -fr -- debian/seqan-apps/ debian/tmp/ debian/libseqan2-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' export DEB_BUILD_ARCH=arm64 dh_auto_configure --arch -- \ -DSEQAN_STATIC_APPS=False \ -DSEQAN_DISABLE_VERSION_CHECK=YES \ -DSEQAN_STRIP_APPS_BUILD_PATH="/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" \ -DSEQAN_NO_DOX=1 cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSEQAN_STATIC_APPS=False -DSEQAN_DISABLE_VERSION_CHECK=YES -DSEQAN_STRIP_APPS_BUILD_PATH=/build/reproducible-path/seqan2-2.5.0\~rc3\+dfsg -DSEQAN_NO_DOX=1 .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Scanning dependencies once in DEVELOP mode... -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found SeqAn: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include (found version "2.5.0") -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) -- Detected git repository: -- Selected repository dir: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring tests -- Configuring tests -- Configuring tests/align -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Performing Test SSE4_SOURCE_RUNS -- Performing Test SSE4_SOURCE_RUNS - Failed -- => Abort simd detection of newer instruction sets -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED - Success -- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS -- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS - Failed -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_extend -- Configuring tests/align_parallel -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_profile -- Configuring tests/align_split -- Configuring tests/alignment_free -- Configuring tests/arg_parse -- Configuring tests/bam_io -- Configuring tests/basic -- Configuring tests/bed_io -- Configuring tests/blast -- Configuring tests/consensus -- Configuring tests/consensus_v2 -- Configuring tests/find -- Configuring tests/gff_io -- Configuring tests/graph_algorithms -- Configuring tests/graph_align -- Configuring tests/graph_msa -- Configuring tests/graph_types -- Configuring tests/index -- Configuring tests/journaled_set -- Configuring tests/journaled_string_tree -- Configuring tests/map -- Configuring tests/misc -- Configuring tests/modifier -- Configuring tests/modifier_cyclic_shape -- Configuring tests/multiple_translation_units -- Configuring tests/parallel -- Configuring tests/parse_lm -- Configuring tests/pipe -- Configuring tests/platform -- Configuring tests/random -- Configuring tests/realign -- Configuring tests/reduced_aminoacid -- Configuring tests/rna_io -- Configuring tests/roi_io -- Configuring tests/score -- Configuring tests/seeds -- Configuring tests/seq_io -- Configuring tests/sequence -- Configuring tests/sequence_journaled -- Configuring tests/simd -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/simple_intervals_io -- Configuring tests/statistics -- Configuring tests/store -- Configuring tests/stream -- Configuring tests/find_swift -- Configuring tests/tabix_io -- Configuring tests/translation -- Configuring tests/test_ucsc_io -- Configuring tests/vcf_io -- Configuring demos -- Found Python3: /usr/bin/python3 (found version "3.13.9") found components: Interpreter -- Configuring apps -- Configuring apps/alf -- CTD testing was not configured. -- Configuring apps/bs_tools -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/dfi -- CTD testing was not configured. -- Configuring apps/fiona -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/fx_tools -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/gustaf -- Configuring apps/insegt -- CTD testing was not configured. -- Configuring apps/mason2 -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/micro_razers -- Configuring apps/ngs_roi -- Configuring apps/pair_align -- Configuring apps/param_chooser -- Configuring apps/rabema -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/razers -- Configuring apps/razers3 -- CTD testing was not configured. -- Configuring apps/rep_sep -- Configuring apps/sak -- CTD testing was not configured. -- Configuring apps/sam2matrix -- CTD testing was not configured. -- Configuring apps/samcat -- CTD testing was not configured. -- Configuring apps/searchjoin -- Configuring apps/seqan_tcoffee -- CTD testing was not configured. -- Configuring apps/seqcons2 -- Configuring apps/sgip -- Configuring apps/snp_store -- CTD testing was not configured. -- Configuring apps/splazers -- Configuring apps/stellar -- CTD testing was not configured. -- Configuring apps/tree_recon -- CTD testing was not configured. -- Configuring apps/yara -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring done (92.7s) -- Generating done (2.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_configure --indep -B build -- \ -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 \ -DSEQAN_DISABLE_REVISION_INFO=1 cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_REVISION_INFO=1 .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Repository revision information disabled. -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/build make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_build --arch cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" -B"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/CMakeFiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_local.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -MF CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o.d -o CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_lcs.cpp" make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/build [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Nothing to be done for 'CMakeFiles/seqan_library.dir/build'. make[4]: Leaving 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/external_split_merge.cpp" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_local.cpp" [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake" "--color=" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/genomic_variants.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/mason_options.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/methylation_levels.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_454.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_base.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0111 [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_genome.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0100 make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser/param_chooser.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_local [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_illumina.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_1111 make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser/test_param_chooser.cpp" [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_sanger.cpp" make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/prepare_sam.cpp" make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/rabema_build_gold_standard.cpp" [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/vcf_materialization.cpp" [ 2%] Linking CXX executable ../../bin/test_funcs_param_chooser cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_funcs_param_chooser.dir/link.d CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/rabema_evaluate.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target pair_align_global_1000 make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/do_search.cpp" [ 3%] Linking CXX executable ../../bin/param_chooser cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/param_chooser.dir/link.d CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target param_chooser make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers/razers.cpp" [ 3%] Linking CXX executable ../../bin/rabema_do_search cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_do_search.dir/link.d CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_do_search make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/razers.cpp" [ 3%] Linking CXX static library libmason_sim.a cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target mason_sim make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/simulate_reads.cpp" [ 3%] Linking CXX executable ../../bin/rabema_prepare_sam cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_prepare_sam.dir/link.d CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_prepare_sam make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/quality2prob.cpp" [ 3%] Linking CXX executable ../../bin/rabema_build_gold_standard cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_build_gold_standard.dir/link.d CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_build_gold_standard make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rep_sep" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rep_sep/rep_sep.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1100 [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers/param_tabs.cpp" [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/param_tabs.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1010 make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sak" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sak/sak.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1101 make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sam2matrix" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sam2matrix/sam2matrix.cpp" make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/samcat" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/samcat/samcat.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1001 make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin/search.cpp" [ 3%] Linking CXX executable ../../bin/rabema_evaluate cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_evaluate.dir/link.d CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_evaluate make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin/join.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1011 make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqan_tcoffee" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1110 make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons.cpp" [ 3%] Linking CXX executable ../../bin/razers3_simulate_reads cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/razers3_simulate_reads.dir/link.d CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target razers3_simulate_reads [ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons_app.cpp" make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sgip" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sgip/sgip.cpp" [ 3%] Linking CXX executable ../../bin/razers3_quality2prob cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/razers3_quality2prob.dir/link.d CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target razers3_quality2prob make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/snp_store" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/snp_store/snp_store.cpp" [ 4%] Linking CXX executable ../../bin/sam2matrix cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam2matrix.dir/link.d CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sam2matrix [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons_options.cpp" [ 4%] Linking CXX executable ../../bin/samcat cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 [ 4%] Linking CXX executable ../../bin/rep_sep cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samcat.dir/link.d CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target samcat make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/splazers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/splazers/splazers.cpp" /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rep_sep.dir/link.d CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target rep_sep make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/stellar" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/stellar/stellar.cpp" [ 4%] Linking CXX executable ../../bin/sak cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sak.dir/link.d CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sak make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/tree_recon" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/tree_recon/tree_recon.cpp" [ 4%] Linking CXX executable ../../bin/sgip cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sgip.dir/link.d CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sgip make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara/indexer.cpp" make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara/mapper.cpp" [ 4%] Linking CXX executable ../../bin/tree_recon cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tree_recon.dir/link.d CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target tree_recon make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/tests/align" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align.dir/test_align.cpp.o -MF CMakeFiles/test_align.dir/test_align.cpp.o.d -o CMakeFiles/test_align.dir/test_align.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/tests/align/test_align.cpp" make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make[4]: *** [tests/align/CMakeFiles/test_align.dir/build.make:82: tests/align/CMakeFiles/test_align.dir/test_align.cpp.o] Terminated make[4]: *** [apps/yara/CMakeFiles/yara_indexer.dir/build.make:82: apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o] Terminated make[3]: *** [CMakeFiles/Makefile2:3608: tests/align/CMakeFiles/test_align.dir/all] Terminated make[4]: *** [apps/searchjoin/CMakeFiles/s4_search.dir/build.make:82: apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o] Terminated make[4]: *** [apps/splazers/CMakeFiles/splazers.dir/build.make:82: apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o] Terminated make[4]: *** [apps/stellar/CMakeFiles/stellar.dir/build.make:82: apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o] Terminated make[3]: *** [CMakeFiles/Makefile2:21874: apps/searchjoin/CMakeFiles/s4_search.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22162: apps/yara/CMakeFiles/yara_indexer.dir/all] Terminated make[4]: *** [apps/razers3/CMakeFiles/razers3.dir/build.make:82: apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o] Terminated make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make[3]: *** [CMakeFiles/Makefile2:22066: apps/splazers/CMakeFiles/splazers.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:21970: apps/seqcons2/CMakeFiles/seqcons2.dir/all] Error 2 make[3]: *** [CMakeFiles/Makefile2:21618: apps/razers3/CMakeFiles/razers3.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22098: apps/stellar/CMakeFiles/stellar.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22194: apps/yara/CMakeFiles/yara_mapper.dir/all] Error 2 make[4]: *** [apps/razers/CMakeFiles/razers.dir/build.make:82: apps/razers/CMakeFiles/razers.dir/razers.cpp.o] Terminated make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make: *** [debian/rules:37: binary] Terminated make[2]: *** [Makefile:149: all] Terminated make[4]: *** [apps/searchjoin/CMakeFiles/s4_join.dir/build.make:82: apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o] Terminated make[4]: *** [apps/snp_store/CMakeFiles/snp_store.dir/build.make:82: apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o] Terminated Terminated make[1]: *** [debian/rules:79: override_dh_auto_build-arch] Terminated I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice - Slice /system/pbuilder/build/seqan2_2.5.0~rc3+dfsg-1/63556 Loaded: loaded Active: active since Fri 2026-12-04 09:26:47 -12; 26min ago Invocation: e0aee72766ff49a2a83ba9a21779dc41 Tasks: 8 Memory: 5.3G (peak: 15.4G, swap: 3.5G, swap peak: 6.4G) CPU: 56min 4.106s CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1.slice/system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice `-run-p68581-i8456844.scope |-111036 "[cc1plus]" |-123207 "[cc1plus]" |-123285 "[cc1plus]" |-126064 "[cc1plus]" |-130047 "[cc1plus]" |-140623 "[cc1plus]" |-140658 "[cc1plus]" `-142759 "[cc1plus]" Dec 04 09:26:47 codethink03-arm64 systemd[1]: Created slice system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice - Slice /system/pbuilder/build/seqan2_2.5.0~rc3+dfsg-1/63556. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63556 and its subdirectories Starting cleanup. All cleanup done. Fri Dec 4 21:52:56 UTC 2026 - reproducible_build.sh stopped running as /tmp/jenkins-script-TRiD5tqa, removing. /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA: total 16 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 15:29 b1 drwxrwxr-x 2 jenkins jenkins 4096 Nov 1 15:03 b2 -rw------- 1 jenkins jenkins 3456 Nov 1 15:03 rbuildlog.3qbKP2b -rw-rw-r-- 1 jenkins jenkins 2285 Nov 22 2024 seqan2_2.5.0~rc3+dfsg-1.dsc /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/b1: total 184 -rw-r--r-- 1 jenkins jenkins 184339 Nov 1 15:29 build.log /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/b2: total 0 Sat Nov 1 15:29:56 UTC 2025 I: Deleting $TMPDIR on codethink03-arm64.debian.net. I: pbuilder: network access will be disabled during build I: Current time: Fri Dec 4 09:26:41 -12 2026 I: pbuilder-time-stamp: 1796419601 I: Building the build Environment I: extracting base tarball [/var/cache/pbuilder/experimental-reproducible-base.tgz] I: copying local configuration W: --override-config is not set; not updating apt.conf Read the manpage for details. I: mounting /proc filesystem I: mounting /sys filesystem I: creating /{dev,run}/shm I: mounting /dev/pts filesystem I: redirecting /dev/ptmx to /dev/pts/ptmx I: policy-rc.d already exists I: Copying source file I: copying [seqan2_2.5.0~rc3+dfsg-1.dsc] I: copying [./seqan2_2.5.0~rc3+dfsg.orig.tar.xz] I: copying [./seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz] I: Extracting source dpkg-source: warning: cannot verify inline signature for ./seqan2_2.5.0~rc3+dfsg-1.dsc: no acceptable signature found dpkg-source: info: extracting seqan2 in seqan2-2.5.0~rc3+dfsg dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg.orig.tar.xz dpkg-source: info: unpacking seqan2_2.5.0~rc3+dfsg-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying skip-some-apps-on-some-archs dpkg-source: info: applying tweak_readmes dpkg-source: info: applying 0001-FIX-Typo.patch dpkg-source: info: applying 0002-FIX-version-check-test-failing-if-program-is-missing.patch dpkg-source: info: applying 0003-INFRA-Strip-build-paths-from-apps.patch I: Not using root during the build. I: Installing the build-deps I: user script /srv/workspace/pbuilder/63556/tmp/hooks/D02_print_environment starting I: set BUILDDIR='/build/reproducible-path' BUILDUSERGECOS='first user,first room,first work-phone,first home-phone,first other' BUILDUSERNAME='pbuilder1' BUILD_ARCH='arm64' DEBIAN_FRONTEND='noninteractive' DEB_BUILD_OPTIONS='buildinfo=+all reproducible=+all parallel=12 ' DISTRIBUTION='experimental' HOME='/root' HOST_ARCH='arm64' IFS=' ' INVOCATION_ID='4201f99e55dc43c38ac897005e1fb6df' LANG='C' LANGUAGE='en_US:en' LC_ALL='C' MAIL='/var/mail/root' OPTIND='1' PATH='/usr/sbin:/usr/bin:/sbin:/bin:/usr/games' PBCURRENTCOMMANDLINEOPERATION='build' PBUILDER_OPERATION='build' PBUILDER_PKGDATADIR='/usr/share/pbuilder' PBUILDER_PKGLIBDIR='/usr/lib/pbuilder' PBUILDER_SYSCONFDIR='/etc' PPID='63556' PS1='# ' PS2='> ' PS4='+ ' PWD='/' SHELL='/bin/bash' SHLVL='2' SUDO_COMMAND='/usr/bin/timeout -k 18.1h 18h /usr/bin/ionice -c 3 /usr/bin/nice /usr/sbin/pbuilder --build --configfile /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/pbuilderrc_EWD0 --distribution experimental --hookdir /etc/pbuilder/first-build-hooks --debbuildopts -b --basetgz /var/cache/pbuilder/experimental-reproducible-base.tgz --buildresult /srv/reproducible-results/rbuild-debian/r-b-build.j1rAgDIA/b1 --logfile b1/build.log seqan2_2.5.0~rc3+dfsg-1.dsc' SUDO_GID='109' SUDO_HOME='/var/lib/jenkins' SUDO_UID='104' SUDO_USER='jenkins' TERM='unknown' TZ='/usr/share/zoneinfo/Etc/GMT+12' USER='root' _='/usr/bin/systemd-run' http_proxy='http://192.168.101.4:3128' I: uname -a Linux codethink03-arm64 6.12.48+deb13-cloud-arm64 #1 SMP Debian 6.12.48-1 (2025-09-20) aarch64 GNU/Linux I: ls -l /bin lrwxrwxrwx 1 root root 7 Aug 10 2025 /bin -> usr/bin I: user script /srv/workspace/pbuilder/63556/tmp/hooks/D02_print_environment finished -> Attempting to satisfy build-dependencies -> Creating pbuilder-satisfydepends-dummy package Package: pbuilder-satisfydepends-dummy Version: 0.invalid.0 Architecture: arm64 Maintainer: Debian Pbuilder Team Description: Dummy package to satisfy dependencies with aptitude - created by pbuilder This package was created automatically by pbuilder to satisfy the build-dependencies of the package being currently built. Depends: debhelper-compat (= 13), python3, cmake, zlib1g-dev, libbz2-dev, libboost-dev dpkg-deb: building package 'pbuilder-satisfydepends-dummy' in '/tmp/satisfydepends-aptitude/pbuilder-satisfydepends-dummy.deb'. Selecting previously unselected package pbuilder-satisfydepends-dummy. (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../pbuilder-satisfydepends-dummy.deb ... Unpacking pbuilder-satisfydepends-dummy (0.invalid.0) ... dpkg: pbuilder-satisfydepends-dummy: dependency problems, but configuring anyway as you requested: pbuilder-satisfydepends-dummy depends on debhelper-compat (= 13); however: Package debhelper-compat is not installed. pbuilder-satisfydepends-dummy depends on python3; however: Package python3 is not installed. pbuilder-satisfydepends-dummy depends on cmake; however: Package cmake is not installed. pbuilder-satisfydepends-dummy depends on zlib1g-dev; however: Package zlib1g-dev is not installed. pbuilder-satisfydepends-dummy depends on libbz2-dev; however: Package libbz2-dev is not installed. pbuilder-satisfydepends-dummy depends on libboost-dev; however: Package libboost-dev is not installed. Setting up pbuilder-satisfydepends-dummy (0.invalid.0) ... Reading package lists... Building dependency tree... Reading state information... Initializing package states... Writing extended state information... Building tag database... pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) pbuilder-satisfydepends-dummy is already installed at the requested version (0.invalid.0) The following NEW packages will be installed: autoconf{a} automake{a} autopoint{a} autotools-dev{a} bsdextrautils{a} cmake{a} cmake-data{a} debhelper{a} dh-autoreconf{a} dh-strip-nondeterminism{a} dwz{a} file{a} gcc-14-base{a} gettext{a} gettext-base{a} groff-base{a} intltool-debian{a} libarchive-zip-perl{a} libarchive13t64{a} libboost-dev{a} libboost1.83-dev{a} libbrotli1{a} libbz2-dev{a} libcom-err2{a} libcurl4t64{a} libdebhelper-perl{a} libelf1t64{a} libexpat1{a} libffi8{a} libfile-stripnondeterminism-perl{a} libgcc-14-dev{a} libgnutls30t64{a} libgssapi-krb5-2{a} libidn2-0{a} libjsoncpp26{a} libk5crypto3{a} libkeyutils1{a} libkrb5-3{a} libkrb5support0{a} libldap2{a} libmagic-mgc{a} libmagic1t64{a} libnghttp2-14{a} libnghttp3-9{a} libngtcp2-16{a} libngtcp2-crypto-ossl0{a} libp11-kit0{a} libpipeline1{a} libproc2-0{a} libpsl5t64{a} libpython3-stdlib{a} libpython3.13-minimal{a} libpython3.13-stdlib{a} libreadline8t64{a} librhash1{a} librtmp1{a} libsasl2-2{a} libsasl2-modules-db{a} libssh2-1t64{a} libstdc++-14-dev{a} libtasn1-6{a} libtool{a} libuchardet0{a} libunistring5{a} libuv1t64{a} libxml2-16{a} m4{a} man-db{a} media-types{a} netbase{a} po-debconf{a} procps{a} python3{a} python3-minimal{a} python3.13{a} python3.13-minimal{a} readline-common{a} sensible-utils{a} tzdata{a} zlib1g-dev{a} The following packages are RECOMMENDED but will NOT be installed: bzip2-doc ca-certificates curl krb5-locales libarchive-cpio-perl libldap-common libltdl-dev libmail-sendmail-perl libsasl2-modules linux-sysctl-defaults lynx psmisc publicsuffix wget 0 packages upgraded, 80 newly installed, 0 to remove and 0 not upgraded. Need to get 51.9 MB of archives. After unpacking 343 MB will be used. Writing extended state information... Get: 1 http://deb.debian.org/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB] Get: 2 http://deb.debian.org/debian unstable/main arm64 libpython3.13-minimal arm64 3.13.9-1 [858 kB] Get: 3 http://deb.debian.org/debian unstable/main arm64 python3.13-minimal arm64 3.13.9-1 [2061 kB] Get: 4 http://deb.debian.org/debian unstable/main arm64 python3-minimal arm64 3.13.7-1 [27.2 kB] Get: 5 http://deb.debian.org/debian unstable/main arm64 media-types all 14.0.0 [30.8 kB] Get: 6 http://deb.debian.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get: 7 http://deb.debian.org/debian unstable/main arm64 tzdata all 2025b-5 [260 kB] Get: 8 http://deb.debian.org/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get: 9 http://deb.debian.org/debian unstable/main arm64 readline-common all 8.3-3 [74.8 kB] Get: 10 http://deb.debian.org/debian unstable/main arm64 libreadline8t64 arm64 8.3-3 [169 kB] Get: 11 http://deb.debian.org/debian unstable/main arm64 libpython3.13-stdlib arm64 3.13.9-1 [1900 kB] Get: 12 http://deb.debian.org/debian unstable/main arm64 python3.13 arm64 3.13.9-1 [764 kB] Get: 13 http://deb.debian.org/debian unstable/main arm64 libpython3-stdlib arm64 3.13.7-1 [10.2 kB] Get: 14 http://deb.debian.org/debian unstable/main arm64 python3 arm64 3.13.7-1 [28.3 kB] Get: 15 http://deb.debian.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-9 [62.8 kB] Get: 16 http://deb.debian.org/debian unstable/main arm64 procps arm64 2:4.0.4-9 [871 kB] Get: 17 http://deb.debian.org/debian unstable/main arm64 sensible-utils all 0.0.26 [27.0 kB] Get: 18 http://deb.debian.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-5 [338 kB] Get: 19 http://deb.debian.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-5 [103 kB] Get: 20 http://deb.debian.org/debian unstable/main arm64 file arm64 1:5.46-5 [43.7 kB] Get: 21 http://deb.debian.org/debian unstable/main arm64 gettext-base arm64 0.23.1-2+b1 [241 kB] Get: 22 http://deb.debian.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-2 [69.0 kB] Get: 23 http://deb.debian.org/debian unstable/main arm64 groff-base arm64 1.23.0-9 [1130 kB] Get: 24 http://deb.debian.org/debian unstable/main arm64 bsdextrautils arm64 2.41.2-4 [97.3 kB] Get: 25 http://deb.debian.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get: 26 http://deb.debian.org/debian unstable/main arm64 man-db arm64 2.13.1-1 [1453 kB] Get: 27 http://deb.debian.org/debian unstable/main arm64 m4 arm64 1.4.20-2 [315 kB] Get: 28 http://deb.debian.org/debian unstable/main arm64 autoconf all 2.72-3.1 [494 kB] Get: 29 http://deb.debian.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get: 30 http://deb.debian.org/debian unstable/main arm64 automake all 1:1.18.1-2 [877 kB] Get: 31 http://deb.debian.org/debian unstable/main arm64 autopoint all 0.23.1-2 [770 kB] Get: 32 http://deb.debian.org/debian unstable/main arm64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB] Get: 33 http://deb.debian.org/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-0.3 [591 kB] Get: 34 http://deb.debian.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-4+b1 [323 kB] Get: 35 http://deb.debian.org/debian unstable/main arm64 libnghttp3-9 arm64 1.12.0-1 [63.6 kB] Get: 36 http://deb.debian.org/debian unstable/main arm64 libngtcp2-16 arm64 1.16.0-1 [123 kB] Get: 37 http://deb.debian.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get: 38 http://deb.debian.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get: 39 http://deb.debian.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-3+b3 [24.9 kB] Get: 40 http://deb.debian.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get: 41 http://deb.debian.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-6 [9716 B] Get: 42 http://deb.debian.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get: 43 http://deb.debian.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get: 44 http://deb.debian.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get: 45 http://deb.debian.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get: 46 http://deb.debian.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-10 [19.8 kB] Get: 47 http://deb.debian.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-10 [55.0 kB] Get: 48 http://deb.debian.org/debian unstable/main arm64 libldap2 arm64 2.6.10+dfsg-1 [179 kB] Get: 49 http://deb.debian.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get: 50 http://deb.debian.org/debian unstable/main arm64 libngtcp2-crypto-ossl0 arm64 1.16.0-1 [25.7 kB] Get: 51 http://deb.debian.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get: 52 http://deb.debian.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get: 53 http://deb.debian.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get: 54 http://deb.debian.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-3 [1384 kB] Get: 55 http://deb.debian.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-3 [56.3 kB] Get: 56 http://deb.debian.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get: 57 http://deb.debian.org/debian unstable/main arm64 libcurl4t64 arm64 8.17.0~rc3-1 [370 kB] Get: 58 http://deb.debian.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-4 [73.2 kB] Get: 59 http://deb.debian.org/debian unstable/main arm64 librhash1 arm64 1.4.6-1 [131 kB] Get: 60 http://deb.debian.org/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get: 61 http://deb.debian.org/debian unstable/main arm64 cmake arm64 4.1.1+really3.31.6-2 [10.1 MB] Get: 62 http://deb.debian.org/debian unstable/main arm64 libdebhelper-perl all 13.28 [92.4 kB] Get: 63 http://deb.debian.org/debian unstable/main arm64 libtool all 2.5.4-7 [540 kB] Get: 64 http://deb.debian.org/debian unstable/main arm64 dh-autoreconf all 21 [12.2 kB] Get: 65 http://deb.debian.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get: 66 http://deb.debian.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get: 67 http://deb.debian.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get: 68 http://deb.debian.org/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB] Get: 69 http://deb.debian.org/debian unstable/main arm64 dwz arm64 0.16-2 [100 kB] Get: 70 http://deb.debian.org/debian unstable/main arm64 gettext arm64 0.23.1-2+b1 [1612 kB] Get: 71 http://deb.debian.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get: 72 http://deb.debian.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get: 73 http://deb.debian.org/debian unstable/main arm64 debhelper all 13.28 [941 kB] Get: 74 http://deb.debian.org/debian unstable/main arm64 gcc-14-base arm64 14.3.0-10 [52.4 kB] Get: 75 http://deb.debian.org/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-10 [2366 kB] Get: 76 http://deb.debian.org/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-10 [2568 kB] Get: 77 http://deb.debian.org/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get: 78 http://deb.debian.org/debian unstable/main arm64 libboost-dev arm64 1.83.0.2+b2 [3828 B] Get: 79 http://deb.debian.org/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get: 80 http://deb.debian.org/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Fetched 51.9 MB in 1s (81.9 MB/s) Preconfiguring packages ... Selecting previously unselected package libexpat1:arm64. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 19964 files and directories currently installed.) Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ... Unpacking libexpat1:arm64 (2.7.3-1) ... Selecting previously unselected package libpython3.13-minimal:arm64. Preparing to unpack .../libpython3.13-minimal_3.13.9-1_arm64.deb ... Unpacking libpython3.13-minimal:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13-minimal. Preparing to unpack .../python3.13-minimal_3.13.9-1_arm64.deb ... Unpacking python3.13-minimal (3.13.9-1) ... Setting up libpython3.13-minimal:arm64 (3.13.9-1) ... Setting up libexpat1:arm64 (2.7.3-1) ... Setting up python3.13-minimal (3.13.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 20298 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.13.7-1_arm64.deb ... Unpacking python3-minimal (3.13.7-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_14.0.0_all.deb ... Unpacking media-types (14.0.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package tzdata. Preparing to unpack .../3-tzdata_2025b-5_all.deb ... Unpacking tzdata (2025b-5) ... Selecting previously unselected package libffi8:arm64. Preparing to unpack .../4-libffi8_3.5.2-2_arm64.deb ... Unpacking libffi8:arm64 (3.5.2-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../5-readline-common_8.3-3_all.deb ... Unpacking readline-common (8.3-3) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../6-libreadline8t64_8.3-3_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.3-3) ... Selecting previously unselected package libpython3.13-stdlib:arm64. Preparing to unpack .../7-libpython3.13-stdlib_3.13.9-1_arm64.deb ... Unpacking libpython3.13-stdlib:arm64 (3.13.9-1) ... Selecting previously unselected package python3.13. Preparing to unpack .../8-python3.13_3.13.9-1_arm64.deb ... Unpacking python3.13 (3.13.9-1) ... Selecting previously unselected package libpython3-stdlib:arm64. Preparing to unpack .../9-libpython3-stdlib_3.13.7-1_arm64.deb ... Unpacking libpython3-stdlib:arm64 (3.13.7-1) ... Setting up python3-minimal (3.13.7-1) ... Selecting previously unselected package python3. (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 21313 files and directories currently installed.) Preparing to unpack .../00-python3_3.13.7-1_arm64.deb ... Unpacking python3 (3.13.7-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../01-libproc2-0_2%3a4.0.4-9_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../02-procps_2%3a4.0.4-9_arm64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../03-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../04-libmagic-mgc_1%3a5.46-5_arm64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../05-libmagic1t64_1%3a5.46-5_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-5) ... Selecting previously unselected package file. Preparing to unpack .../06-file_1%3a5.46-5_arm64.deb ... Unpacking file (1:5.46-5) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.23.1-2+b1_arm64.deb ... Unpacking gettext-base (0.23.1-2+b1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../08-libuchardet0_0.0.8-2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-2) ... Selecting previously unselected package groff-base. Preparing to unpack .../09-groff-base_1.23.0-9_arm64.deb ... Unpacking groff-base (1.23.0-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../10-bsdextrautils_2.41.2-4_arm64.deb ... Unpacking bsdextrautils (2.41.2-4) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../11-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../12-man-db_2.13.1-1_arm64.deb ... Unpacking man-db (2.13.1-1) ... Selecting previously unselected package m4. Preparing to unpack .../13-m4_1.4.20-2_arm64.deb ... Unpacking m4 (1.4.20-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../14-autoconf_2.72-3.1_all.deb ... Unpacking autoconf (2.72-3.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../15-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../16-automake_1%3a1.18.1-2_all.deb ... Unpacking automake (1:1.18.1-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../17-autopoint_0.23.1-2_all.deb ... Unpacking autopoint (0.23.1-2) ... Selecting previously unselected package cmake-data. Preparing to unpack .../18-cmake-data_4.1.1+really3.31.6-2_all.deb ... Unpacking cmake-data (4.1.1+really3.31.6-2) ... Selecting previously unselected package libxml2-16:arm64. Preparing to unpack .../19-libxml2-16_2.15.1+dfsg-0.3_arm64.deb ... Unpacking libxml2-16:arm64 (2.15.1+dfsg-0.3) ... 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Unpacking libcom-err2:arm64 (1.47.2-3+b3) ... Selecting previously unselected package libk5crypto3:arm64. Preparing to unpack .../26-libk5crypto3_1.21.3-5_arm64.deb ... Unpacking libk5crypto3:arm64 (1.21.3-5) ... Selecting previously unselected package libkeyutils1:arm64. Preparing to unpack .../27-libkeyutils1_1.6.3-6_arm64.deb ... Unpacking libkeyutils1:arm64 (1.6.3-6) ... Selecting previously unselected package libkrb5-3:arm64. Preparing to unpack .../28-libkrb5-3_1.21.3-5_arm64.deb ... Unpacking libkrb5-3:arm64 (1.21.3-5) ... Selecting previously unselected package libgssapi-krb5-2:arm64. Preparing to unpack .../29-libgssapi-krb5-2_1.21.3-5_arm64.deb ... Unpacking libgssapi-krb5-2:arm64 (1.21.3-5) ... Selecting previously unselected package libunistring5:arm64. Preparing to unpack .../30-libunistring5_1.3-2_arm64.deb ... Unpacking libunistring5:arm64 (1.3-2) ... Selecting previously unselected package libidn2-0:arm64. Preparing to unpack .../31-libidn2-0_2.3.8-4_arm64.deb ... Unpacking libidn2-0:arm64 (2.3.8-4) ... Selecting previously unselected package libsasl2-modules-db:arm64. Preparing to unpack .../32-libsasl2-modules-db_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libsasl2-2:arm64. Preparing to unpack .../33-libsasl2-2_2.1.28+dfsg1-10_arm64.deb ... Unpacking libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Selecting previously unselected package libldap2:arm64. Preparing to unpack .../34-libldap2_2.6.10+dfsg-1_arm64.deb ... Unpacking libldap2:arm64 (2.6.10+dfsg-1) ... Selecting previously unselected package libnghttp2-14:arm64. Preparing to unpack .../35-libnghttp2-14_1.64.0-1.1+b1_arm64.deb ... Unpacking libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Selecting previously unselected package libngtcp2-crypto-ossl0:arm64. Preparing to unpack .../36-libngtcp2-crypto-ossl0_1.16.0-1_arm64.deb ... Unpacking libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Selecting previously unselected package libpsl5t64:arm64. Preparing to unpack .../37-libpsl5t64_0.21.2-1.1+b1_arm64.deb ... Unpacking libpsl5t64:arm64 (0.21.2-1.1+b1) ... Selecting previously unselected package libp11-kit0:arm64. Preparing to unpack .../38-libp11-kit0_0.25.9-2_arm64.deb ... Unpacking libp11-kit0:arm64 (0.25.9-2) ... Selecting previously unselected package libtasn1-6:arm64. Preparing to unpack .../39-libtasn1-6_4.20.0-2_arm64.deb ... Unpacking libtasn1-6:arm64 (4.20.0-2) ... Selecting previously unselected package libgnutls30t64:arm64. Preparing to unpack .../40-libgnutls30t64_3.8.10-3_arm64.deb ... Unpacking libgnutls30t64:arm64 (3.8.10-3) ... Selecting previously unselected package librtmp1:arm64. Preparing to unpack .../41-librtmp1_2.4+20151223.gitfa8646d.1-3_arm64.deb ... Unpacking librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Selecting previously unselected package libssh2-1t64:arm64. Preparing to unpack .../42-libssh2-1t64_1.11.1-1_arm64.deb ... Unpacking libssh2-1t64:arm64 (1.11.1-1) ... Selecting previously unselected package libcurl4t64:arm64. Preparing to unpack .../43-libcurl4t64_8.17.0~rc3-1_arm64.deb ... Unpacking libcurl4t64:arm64 (8.17.0~rc3-1) ... Selecting previously unselected package libjsoncpp26:arm64. Preparing to unpack .../44-libjsoncpp26_1.9.6-4_arm64.deb ... Unpacking libjsoncpp26:arm64 (1.9.6-4) ... Selecting previously unselected package librhash1:arm64. Preparing to unpack .../45-librhash1_1.4.6-1_arm64.deb ... Unpacking librhash1:arm64 (1.4.6-1) ... Selecting previously unselected package libuv1t64:arm64. Preparing to unpack .../46-libuv1t64_1.51.0-2_arm64.deb ... Unpacking libuv1t64:arm64 (1.51.0-2) ... Selecting previously unselected package cmake. Preparing to unpack .../47-cmake_4.1.1+really3.31.6-2_arm64.deb ... Unpacking cmake (4.1.1+really3.31.6-2) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../48-libdebhelper-perl_13.28_all.deb ... Unpacking libdebhelper-perl (13.28) ... Selecting previously unselected package libtool. Preparing to unpack .../49-libtool_2.5.4-7_all.deb ... Unpacking libtool (2.5.4-7) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../50-dh-autoreconf_21_all.deb ... Unpacking dh-autoreconf (21) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../51-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../52-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../53-dh-strip-nondeterminism_1.15.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.15.0-1) ... Selecting previously unselected package libelf1t64:arm64. Preparing to unpack .../54-libelf1t64_0.194-1_arm64.deb ... Unpacking libelf1t64:arm64 (0.194-1) ... Selecting previously unselected package dwz. Preparing to unpack .../55-dwz_0.16-2_arm64.deb ... Unpacking dwz (0.16-2) ... Selecting previously unselected package gettext. Preparing to unpack .../56-gettext_0.23.1-2+b1_arm64.deb ... Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../57-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../58-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../59-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../60-gcc-14-base_14.3.0-10_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-10) ... Selecting previously unselected package libgcc-14-dev:arm64. Preparing to unpack .../61-libgcc-14-dev_14.3.0-10_arm64.deb ... Unpacking libgcc-14-dev:arm64 (14.3.0-10) ... Selecting previously unselected package libstdc++-14-dev:arm64. Preparing to unpack .../62-libstdc++-14-dev_14.3.0-10_arm64.deb ... Unpacking libstdc++-14-dev:arm64 (14.3.0-10) ... Selecting previously unselected package libboost1.83-dev:arm64. Preparing to unpack .../63-libboost1.83-dev_1.83.0-5_arm64.deb ... Unpacking libboost1.83-dev:arm64 (1.83.0-5) ... Selecting previously unselected package libboost-dev:arm64. Preparing to unpack .../64-libboost-dev_1.83.0.2+b2_arm64.deb ... Unpacking libboost-dev:arm64 (1.83.0.2+b2) ... Selecting previously unselected package libbz2-dev:arm64. Preparing to unpack .../65-libbz2-dev_1.0.8-6_arm64.deb ... Unpacking libbz2-dev:arm64 (1.0.8-6) ... Selecting previously unselected package zlib1g-dev:arm64. Preparing to unpack .../66-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_arm64.deb ... Unpacking zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up media-types (14.0.0) ... Setting up libpipeline1:arm64 (1.5.8-1) ... Setting up libkeyutils1:arm64 (1.6.3-6) ... Setting up bsdextrautils (2.41.2-4) ... Setting up libmagic-mgc (1:5.46-5) ... Setting up gcc-14-base:arm64 (14.3.0-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libxml2-16:arm64 (2.15.1+dfsg-0.3) ... Setting up libdebhelper-perl (13.28) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.51.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-5) ... Setting up libnghttp2-14:arm64 (1.64.0-1.1+b1) ... Setting up gettext-base (0.23.1-2+b1) ... Setting up m4 (1.4.20-2) ... Setting up libcom-err2:arm64 (1.47.2-3+b3) ... Setting up file (1:5.46-5) ... Setting up libelf1t64:arm64 (0.194-1) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-10) ... Setting up tzdata (2025b-5) ... Current default time zone: 'Etc/UTC' Local time is now: Fri Dec 4 21:27:19 UTC 2026. Universal Time is now: Fri Dec 4 21:27:19 UTC 2026. Run 'dpkg-reconfigure tzdata' if you wish to change it. Setting up autotools-dev (20240727.1) ... Setting up libjsoncpp26:arm64 (1.9.6-4) ... Setting up libproc2-0:arm64 (2:4.0.4-9) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-10) ... Setting up autoconf (2.72-3.1) ... Setting up libnghttp3-9:arm64 (1.12.0-1) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libffi8:arm64 (3.5.2-2) ... Setting up dwz (0.16-2) ... Setting up sensible-utils (0.0.26) ... Setting up libuchardet0:arm64 (0.0.8-2) ... Setting up procps (2:4.0.4-9) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.16.0-1) ... Setting up cmake-data (4.1.1+really3.31.6-2) ... Setting up librhash1:arm64 (1.4.6-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up libgcc-14-dev:arm64 (14.3.0-10) ... Setting up libstdc++-14-dev:arm64 (14.3.0-10) ... Setting up libarchive13t64:arm64 (3.7.4-4+b1) ... Setting up readline-common (8.3-3) ... Setting up libldap2:arm64 (2.6.10+dfsg-1) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up automake (1:1.18.1-2) ... update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.15.0-1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up gettext (0.23.1-2+b1) ... Setting up libtool (2.5.4-7) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (21) ... Setting up libp11-kit0:arm64 (0.25.9-2) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up libngtcp2-crypto-ossl0:arm64 (1.16.0-1) ... Setting up libreadline8t64:arm64 (8.3-3) ... Setting up dh-strip-nondeterminism (1.15.0-1) ... Setting up groff-base (1.23.0-9) ... Setting up libboost-dev:arm64 (1.83.0.2+b2) ... Setting up libpython3.13-stdlib:arm64 (3.13.9-1) ... Setting up libpython3-stdlib:arm64 (3.13.7-1) ... Setting up libgnutls30t64:arm64 (3.8.10-3) ... Setting up python3.13 (3.13.9-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up python3 (3.13.7-1) ... Setting up man-db (2.13.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-3) ... Setting up libcurl4t64:arm64 (8.17.0~rc3-1) ... Setting up debhelper (13.28) ... Setting up cmake (4.1.1+really3.31.6-2) ... Processing triggers for libc-bin (2.41-12) ... Reading package lists... Building dependency tree... Reading state information... Reading extended state information... Initializing package states... Writing extended state information... Building tag database... -> Finished parsing the build-deps I: Building the package I: Running cd /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/ && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-buildpackage -us -uc -b && env PATH="/usr/sbin:/usr/bin:/sbin:/bin:/usr/games" HOME="/nonexistent/first-build" dpkg-genchanges -S > ../seqan2_2.5.0~rc3+dfsg-1_source.changes dpkg-buildpackage: info: source package seqan2 dpkg-buildpackage: info: source version 2.5.0~rc3+dfsg-1 dpkg-buildpackage: info: source distribution experimental dpkg-buildpackage: info: source changed by Enrico Seiler dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_clean find . -type f -name "*.pyc" -delete if [ -d orig ] ; then \ for header in `find orig -name "*generated_forwards.h"` ; do \ mv ${header} `echo $header | sed 's?orig/??'` ; \ done ; \ fi rm -rf orig make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_clean rm -f debian/debhelper-build-stamp rm -rf debian/.debhelper/ rm -f -- debian/seqan-apps.substvars debian/libseqan2-dev.substvars debian/files rm -fr -- debian/seqan-apps/ debian/tmp/ debian/libseqan2-dev/ find . \( \( \ \( -path .\*/.git -o -path .\*/.svn -o -path .\*/.bzr -o -path .\*/.hg -o -path .\*/CVS -o -path .\*/.pc -o -path .\*/_darcs \) -prune -o -type f -a \ \( -name '#*#' -o -name '.*~' -o -name '*~' -o -name DEADJOE \ -o -name '*.orig' -o -name '*.rej' -o -name '*.bak' \ -o -name '.*.orig' -o -name .*.rej -o -name '.SUMS' \ -o -name TAGS -o \( -path '*/.deps/*' -a -name '*.P' \) \ \) -exec rm -f {} + \) -o \ \( -type d -a \( -name autom4te.cache -o -name __pycache__ \) -prune -exec rm -rf {} + \) \) debian/rules binary dh binary dh_update_autotools_config dh_autoreconf debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' export DEB_BUILD_ARCH=arm64 dh_auto_configure --arch -- \ -DSEQAN_STATIC_APPS=False \ -DSEQAN_DISABLE_VERSION_CHECK=YES \ -DSEQAN_STRIP_APPS_BUILD_PATH="/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" \ -DSEQAN_NO_DOX=1 cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSEQAN_STATIC_APPS=False -DSEQAN_DISABLE_VERSION_CHECK=YES -DSEQAN_STRIP_APPS_BUILD_PATH=/build/reproducible-path/seqan2-2.5.0\~rc3\+dfsg -DSEQAN_NO_DOX=1 .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Scanning dependencies once in DEVELOP mode... -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") -- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1") -- Found BZip2: /usr/lib/aarch64-linux-gnu/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Performing Test CXX14_BUILTIN -- Performing Test CXX14_BUILTIN - Success -- Looking for C++ include execinfo.h -- Looking for C++ include execinfo.h - found -- Found SeqAn: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include (found version "2.5.0") -- Could NOT find LibXml2 (missing: LIBXML2_LIBRARY LIBXML2_INCLUDE_DIR) -- Detected git repository: -- Selected repository dir: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring tests -- Configuring tests -- Configuring tests/align -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Performing Test SSE4_SOURCE_RUNS -- Performing Test SSE4_SOURCE_RUNS - Failed -- => Abort simd detection of newer instruction sets -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED -- Performing Test SEQAN_SIMD_SEQANSIMD_SUPPORTED - Success -- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS -- Performing Test SEQANSIMD_AVX512_SKX_SOURCE_RUNS - Failed -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_extend -- Configuring tests/align_parallel -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/align_profile -- Configuring tests/align_split -- Configuring tests/alignment_free -- Configuring tests/arg_parse -- Configuring tests/bam_io -- Configuring tests/basic -- Configuring tests/bed_io -- Configuring tests/blast -- Configuring tests/consensus -- Configuring tests/consensus_v2 -- Configuring tests/find -- Configuring tests/gff_io -- Configuring tests/graph_algorithms -- Configuring tests/graph_align -- Configuring tests/graph_msa -- Configuring tests/graph_types -- Configuring tests/index -- Configuring tests/journaled_set -- Configuring tests/journaled_string_tree -- Configuring tests/map -- Configuring tests/misc -- Configuring tests/modifier -- Configuring tests/modifier_cyclic_shape -- Configuring tests/multiple_translation_units -- Configuring tests/parallel -- Configuring tests/parse_lm -- Configuring tests/pipe -- Configuring tests/platform -- Configuring tests/random -- Configuring tests/realign -- Configuring tests/reduced_aminoacid -- Configuring tests/rna_io -- Configuring tests/roi_io -- Configuring tests/score -- Configuring tests/seeds -- Configuring tests/seq_io -- Configuring tests/sequence -- Configuring tests/sequence_journaled -- Configuring tests/simd -- Could NOT find SDE: Intel(R) Software Development Emulator (sde) (missing: SDE_EXECUTABLE SDE_VERSION_STRING) -- Could NOT find Umesimd (missing: UMESIMD_INCLUDE_DIR) -- Intel Software Development Emulator not found, not building platform emulated tests. -- Configuring tests/simple_intervals_io -- Configuring tests/statistics -- Configuring tests/store -- Configuring tests/stream -- Configuring tests/find_swift -- Configuring tests/tabix_io -- Configuring tests/translation -- Configuring tests/test_ucsc_io -- Configuring tests/vcf_io -- Configuring demos -- Found Python3: /usr/bin/python3 (found version "3.13.9") found components: Interpreter -- Configuring apps -- Configuring apps/alf -- CTD testing was not configured. -- Configuring apps/bs_tools -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/dfi -- CTD testing was not configured. -- Configuring apps/fiona -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/fx_tools -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/gustaf -- Configuring apps/insegt -- CTD testing was not configured. -- Configuring apps/mason2 -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/micro_razers -- Configuring apps/ngs_roi -- Configuring apps/pair_align -- Configuring apps/param_chooser -- Configuring apps/rabema -- CTD testing was not configured. -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring apps/razers -- Configuring apps/razers3 -- CTD testing was not configured. -- Configuring apps/rep_sep -- Configuring apps/sak -- CTD testing was not configured. -- Configuring apps/sam2matrix -- CTD testing was not configured. -- Configuring apps/samcat -- CTD testing was not configured. -- Configuring apps/searchjoin -- Configuring apps/seqan_tcoffee -- CTD testing was not configured. -- Configuring apps/seqcons2 -- Configuring apps/sgip -- Configuring apps/snp_store -- CTD testing was not configured. -- Configuring apps/splazers -- Configuring apps/stellar -- CTD testing was not configured. -- Configuring apps/tree_recon -- CTD testing was not configured. -- Configuring apps/yara -- CTD testing was not configured. -- CTD testing was not configured. -- Configuring done (92.7s) -- Generating done (2.5s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' rm -f debian/seqan-apps.debhelper.log debian/rules override_dh_auto_configure-indep make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_configure --indep -B build -- \ -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 \ -DSEQAN_DISABLE_REVISION_INFO=1 cd build && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_LIBRARY -DSEQAN_NO_DOX=1 -DSEQAN_DISABLE_REVISION_INFO=1 .. -- The CXX compiler identification is GNU 15.2.0 -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/c++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Initializing SeqAn Build System... -- Repository revision information disabled. -- Configuring done (0.8s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED -- Build files have been written to: /build/reproducible-path/seqan2-2.5.0~rc3+dfsg/build make[1]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' rm -f debian/libseqan2-dev.debhelper.log debian/rules override_dh_auto_build-arch make[1]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg' dh_auto_build --arch cd obj-aarch64-linux-gnu && make -j12 INSTALL="install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' /usr/bin/cmake -S"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" -B"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/CMakeFiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu//CMakeFiles/progress.marks" make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f CMakeFiles/seqan_library.dir/build.make CMakeFiles/seqan_library.dir/depend make -f apps/mason2/CMakeFiles/mason_sim.dir/build.make apps/mason2/CMakeFiles/mason_sim.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/CMakeFiles/seqan_library.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake" "--color=" make -f apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_local.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_local.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/depend make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/depend make[4]: Entering directory 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"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix 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"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/DependInfo.cmake" "--color=" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E 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"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/DependInfo.cmake" "--color=" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory 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'/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/build make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_lcs.dir/pair_align_lcs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK 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-fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0001.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1111.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0000.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0100.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/external_split_merge.cpp" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -MF CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o.d -o CMakeFiles/pair_align_local.dir/pair_align_local.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_local.cpp" [ 0%] Built target seqan_library make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/depend [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0110.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/DependInfo.cmake" "--color=" [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0011.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0010.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0101.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=0 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_0111.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/genomic_variants.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/mason_options.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_lcs make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1000.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/methylation_levels.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_454.cpp" [ 0%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_base.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 0%] Built target pair_align_global_0110 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1001.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0001 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1010.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0000 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=0 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1011.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0111 [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_genome.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0101 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1100.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0010 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=1 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=0 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1101.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0011 make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build.make apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/pair_align/lib" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DSUFFIX_GAP_BOTTOM=0 -DSUFFIX_GAP_LEFT=1 -DSUFFIX_GAP_RIGHT=1 -DSUFFIX_GAP_TOP=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -MD -MT apps/pair_align/lib/CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -MF CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o.d -o CMakeFiles/pair_align_global_1110.dir/pair_align_global.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/pair_align/lib/pair_align_global.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_0100 make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/param_chooser/CMakeFiles/param_chooser.dir/build.make apps/param_chooser/CMakeFiles/param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser/param_chooser.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_local [ 1%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_illumina.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Built target pair_align_global_1111 make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 1%] Building CXX object apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/param_chooser/test_param_chooser.cpp" [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/simulate_sanger.cpp" make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/prepare_sam.cpp" make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/rabema_build_gold_standard.cpp" [ 2%] Building CXX object apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/mason2/vcf_materialization.cpp" [ 2%] Linking CXX executable ../../bin/test_funcs_param_chooser cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/test_funcs_param_chooser.dir/link.d CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../bin/test_funcs_param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target test_funcs_param_chooser make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/rabema_evaluate.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Built target pair_align_global_1000 make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rabema/CMakeFiles/rabema_do_search.dir/build.make apps/rabema/CMakeFiles/rabema_do_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 2%] Building CXX object apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.2.11\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rabema/do_search.cpp" [ 3%] Linking CXX executable ../../bin/param_chooser cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/param_chooser" && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/param_chooser.dir/link.d CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../bin/param_chooser -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target param_chooser make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers/CMakeFiles/razers.dir/build.make apps/razers/CMakeFiles/razers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers/razers.cpp" [ 3%] Linking CXX executable ../../bin/rabema_do_search cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_do_search.dir/link.d CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../bin/rabema_do_search -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_do_search make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3.dir/build.make apps/razers3/CMakeFiles/razers3.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/razers.cpp" [ 3%] Linking CXX static library libmason_sim.a cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/mason2" && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target mason_sim make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/simulate_reads.cpp" [ 3%] Linking CXX executable ../../bin/rabema_prepare_sam cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_prepare_sam.dir/link.d CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../bin/rabema_prepare_sam -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_prepare_sam make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/quality2prob.cpp" [ 3%] Linking CXX executable ../../bin/rabema_build_gold_standard cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_build_gold_standard.dir/link.d CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../bin/rabema_build_gold_standard -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_build_gold_standard make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rep_sep" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/rep_sep/CMakeFiles/rep_sep.dir/build.make apps/rep_sep/CMakeFiles/rep_sep.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.1.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/rep_sep/rep_sep.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1100 [ 3%] Building CXX object apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers/param_tabs.cpp" [ 3%] Building CXX object apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"3.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/razers3/param_tabs.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1010 make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sak" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sak/CMakeFiles/sak.dir/build.make apps/sak/CMakeFiles/sak.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sak/sak.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1101 make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sam2matrix" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sam2matrix/sam2matrix.cpp" make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/samcat" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/samcat/CMakeFiles/samcat.dir/build.make apps/samcat/CMakeFiles/samcat.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"0.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/samcat/samcat.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1001 make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_search.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_search.dir/build.make apps/searchjoin/CMakeFiles/s4_search.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o -MF CMakeFiles/s4_search.dir/search.cpp.o.d -o CMakeFiles/s4_search.dir/search.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin/search.cpp" [ 3%] Linking CXX executable ../../bin/rabema_evaluate cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rabema" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rabema_evaluate.dir/link.d CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../bin/rabema_evaluate -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target rabema_evaluate make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin/CMakeFiles/s4_join.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/searchjoin/CMakeFiles/s4_join.dir/build.make apps/searchjoin/CMakeFiles/s4_join.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/searchjoin" && /usr/bin/c++ -DSEARCHJOIN_HUGEDB=TRUE -DSEQAN_APP_VERSION=\"0.5.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o -MF CMakeFiles/s4_join.dir/join.cpp.o.d -o CMakeFiles/s4_join.dir/join.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/searchjoin/join.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1011 make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqan_tcoffee" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqan_tcoffee" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.13.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqan_tcoffee/seqan_tcoffee.cpp" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target pair_align_global_1110 make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2/CMakeFiles/seqcons2.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/seqcons2/CMakeFiles/seqcons2.dir/build.make apps/seqcons2/CMakeFiles/seqcons2.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons.cpp" [ 3%] Linking CXX executable ../../bin/razers3_simulate_reads cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/razers3_simulate_reads.dir/link.d CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../bin/razers3_simulate_reads -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target razers3_simulate_reads [ 3%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_app.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_app.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons_app.cpp" make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sgip" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/sgip/CMakeFiles/sgip.dir/build.make apps/sgip/CMakeFiles/sgip.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/sgip/sgip.cpp" [ 3%] Linking CXX executable ../../bin/razers3_quality2prob cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/razers3" && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/razers3_quality2prob.dir/link.d CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../bin/razers3_quality2prob -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Built target razers3_quality2prob make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/snp_store" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/snp_store/CMakeFiles/snp_store.dir/build.make apps/snp_store/CMakeFiles/snp_store.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 3%] Building CXX object apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/snp_store" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/snp_store/snp_store.cpp" [ 4%] Linking CXX executable ../../bin/sam2matrix cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sam2matrix" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sam2matrix.dir/link.d CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../bin/sam2matrix -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sam2matrix [ 4%] Building CXX object apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/seqcons2" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"2.0.10\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/seqcons2/CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -MF CMakeFiles/seqcons2.dir/seqcons_options.cpp.o.d -o CMakeFiles/seqcons2.dir/seqcons_options.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/seqcons2/seqcons_options.cpp" [ 4%] Linking CXX executable ../../bin/samcat cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/samcat" && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 [ 4%] Linking CXX executable ../../bin/rep_sep cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/rep_sep" && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/samcat.dir/link.d CMakeFiles/samcat.dir/samcat.cpp.o -o ../../bin/samcat -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target samcat make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/splazers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/splazers/CMakeFiles/splazers.dir/build.make apps/splazers/CMakeFiles/splazers.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/splazers" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.3.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/splazers/splazers.cpp" /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/rep_sep.dir/link.d CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../bin/rep_sep -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target rep_sep make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/stellar" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/stellar/CMakeFiles/stellar.dir/build.make apps/stellar/CMakeFiles/stellar.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/stellar" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.12\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/stellar/stellar.cpp" [ 4%] Linking CXX executable ../../bin/sak cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sak" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sak.dir/link.d CMakeFiles/sak.dir/sak.cpp.o -o ../../bin/sak -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sak make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/tree_recon" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/tree_recon/CMakeFiles/tree_recon.dir/build.make apps/tree_recon/CMakeFiles/tree_recon.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.4.9\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/tree_recon/tree_recon.cpp" [ 4%] Linking CXX executable ../../bin/sgip cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/sgip" && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/sgip.dir/link.d CMakeFiles/sgip.dir/sgip.cpp.o -o ../../bin/sgip -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target sgip make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_indexer.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/yara/CMakeFiles/yara_indexer.dir/build.make apps/yara/CMakeFiles/yara_indexer.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o -MF CMakeFiles/yara_indexer.dir/indexer.cpp.o.d -o CMakeFiles/yara_indexer.dir/indexer.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara/indexer.cpp" make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara/CMakeFiles/yara_mapper.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f apps/yara/CMakeFiles/yara_mapper.dir/build.make apps/yara/CMakeFiles/yara_mapper.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/yara" && /usr/bin/c++ -DSEQAN_APP_VERSION=\"1.0.3\" -DSEQAN_DATE=\"\" -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"tarball\" -DYARA_LARGE_CONTIGS=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT apps/yara/CMakeFiles/yara_mapper.dir/mapper.cpp.o -MF CMakeFiles/yara_mapper.dir/mapper.cpp.o.d -o CMakeFiles/yara_mapper.dir/mapper.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/apps/yara/mapper.cpp" [ 4%] Linking CXX executable ../../bin/tree_recon cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/apps/tree_recon" && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/c++ -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ffile-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -Wl,-z,relro -Wl,-z,now -Wl,--dependency-file=CMakeFiles/tree_recon.dir/link.d CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../bin/tree_recon -lrt -Wl,--whole-archive -lpthread -Wl,--no-whole-archive /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libbz2.so /usr/lib/gcc/aarch64-linux-gnu/15/libgomp.so /usr/lib/aarch64-linux-gnu/libpthread.a make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Built target tree_recon make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/depend make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" && /usr/bin/cmake -E cmake_depends "Unix Makefiles" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/tests/align" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align" "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align/CMakeFiles/test_align.dir/DependInfo.cmake" "--color=" make[4]: Leaving directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' make -f tests/align/CMakeFiles/test_align.dir/build.make tests/align/CMakeFiles/test_align.dir/build make[4]: Entering directory '/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu' [ 4%] Building CXX object tests/align/CMakeFiles/test_align.dir/test_align.cpp.o cd "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/obj-aarch64-linux-gnu/tests/align" && /usr/bin/c++ -DSEQAN_DISABLE_VERSION_CHECK -DSEQAN_ENABLE_TESTING=1 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I"/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/include" -g -O2 -fdebug-prefix-map=/build/reproducible-path/seqan2-2.5.0~rc3+dfsg=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -DNDEBUG -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -DSEQAN_GLOBAL_EXCEPTION_HANDLER=1 -fopenmp -MD -MT tests/align/CMakeFiles/test_align.dir/test_align.cpp.o -MF CMakeFiles/test_align.dir/test_align.cpp.o.d -o CMakeFiles/test_align.dir/test_align.cpp.o -c "/build/reproducible-path/seqan2-2.5.0~rc3+dfsg/tests/align/test_align.cpp" make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make[4]: *** [tests/align/CMakeFiles/test_align.dir/build.make:82: tests/align/CMakeFiles/test_align.dir/test_align.cpp.o] Terminated make[4]: *** [apps/yara/CMakeFiles/yara_indexer.dir/build.make:82: apps/yara/CMakeFiles/yara_indexer.dir/indexer.cpp.o] Terminated make[3]: *** [CMakeFiles/Makefile2:3608: tests/align/CMakeFiles/test_align.dir/all] Terminated make[4]: *** [apps/searchjoin/CMakeFiles/s4_search.dir/build.make:82: apps/searchjoin/CMakeFiles/s4_search.dir/search.cpp.o] Terminated make[4]: *** [apps/splazers/CMakeFiles/splazers.dir/build.make:82: apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o] Terminated make[4]: *** [apps/stellar/CMakeFiles/stellar.dir/build.make:82: apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o] Terminated make[3]: *** [CMakeFiles/Makefile2:21874: apps/searchjoin/CMakeFiles/s4_search.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22162: apps/yara/CMakeFiles/yara_indexer.dir/all] Terminated make[4]: *** [apps/razers3/CMakeFiles/razers3.dir/build.make:82: apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o] Terminated make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make[3]: *** [CMakeFiles/Makefile2:22066: apps/splazers/CMakeFiles/splazers.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:21970: apps/seqcons2/CMakeFiles/seqcons2.dir/all] Error 2 make[3]: *** [CMakeFiles/Makefile2:21618: apps/razers3/CMakeFiles/razers3.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22098: apps/stellar/CMakeFiles/stellar.dir/all] Terminated make[3]: *** [CMakeFiles/Makefile2:22194: apps/yara/CMakeFiles/yara_mapper.dir/all] Error 2 make[4]: *** [apps/razers/CMakeFiles/razers.dir/build.make:82: apps/razers/CMakeFiles/razers.dir/razers.cpp.o] Terminated make[4]: *** wait: No child processes. Stop. make[4]: *** Waiting for unfinished jobs.... make[4]: *** wait: No child processes. Stop. make: *** [debian/rules:37: binary] Terminated make[2]: *** [Makefile:149: all] Terminated make[4]: *** [apps/searchjoin/CMakeFiles/s4_join.dir/build.make:82: apps/searchjoin/CMakeFiles/s4_join.dir/join.cpp.o] Terminated make[4]: *** [apps/snp_store/CMakeFiles/snp_store.dir/build.make:82: apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o] Terminated Terminated make[1]: *** [debian/rules:79: override_dh_auto_build-arch] Terminated I: copying local configuration E: Failed autobuilding of package I: unmounting dev/ptmx filesystem I: unmounting dev/pts filesystem I: unmounting dev/shm filesystem I: unmounting proc filesystem I: unmounting sys filesystem W: Stray processes left from build: * system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice - Slice /system/pbuilder/build/seqan2_2.5.0~rc3+dfsg-1/63556 Loaded: loaded Active: active since Fri 2026-12-04 09:26:47 -12; 26min ago Invocation: e0aee72766ff49a2a83ba9a21779dc41 Tasks: 8 Memory: 5.3G (peak: 15.4G, swap: 3.5G, swap peak: 6.4G) CPU: 56min 4.106s CGroup: /system.slice/system-pbuilder.slice/system-pbuilder-build.slice/system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1.slice/system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice `-run-p68581-i8456844.scope |-111036 "[cc1plus]" |-123207 "[cc1plus]" |-123285 "[cc1plus]" |-126064 "[cc1plus]" |-130047 "[cc1plus]" |-140623 "[cc1plus]" |-140658 "[cc1plus]" `-142759 "[cc1plus]" Dec 04 09:26:47 codethink03-arm64 systemd[1]: Created slice system-pbuilder-build-seqan2_2.5.0\x7erc3\x2bdfsg\x2d1-63556.slice - Slice /system/pbuilder/build/seqan2_2.5.0~rc3+dfsg-1/63556. I: cleaning the build env I: removing directory /srv/workspace/pbuilder/63556 and its subdirectories seqan2 failed to build from source. removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.rbuild.log' removed '/var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.rbuild.log.gz' removed '/var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.build1.log.gz' Sat Nov 1 15:29:57 UTC 2025 W: No second build log, what happened? Compressing the 1st log... b1/build.log: 91.6% -- replaced with stdout INSERT 0 1 INSERT 0 1 DELETE 1 [2025-11-01 15:29:57] INFO: Starting at 2025-11-01 15:29:57.509876 [2025-11-01 15:29:57] INFO: Generating the pages of 1 package(s) [2025-11-01 15:29:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:57] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/seqan2_2.4.0+dfsg-16_amd64.buildinfo [2025-11-01 15:29:57] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:57] CRITICAL: https://tests.reproducible-builds.org/debian/experimental/arm64/seqan2 didn't produce a buildlog, even though it has been built. [2025-11-01 15:29:57] INFO: Finished at 2025-11-01 15:29:57.851982, took: 0:00:00.342109 Sat Nov 1 15:29:57 UTC 2025 - successfully updated the database and updated https://tests.reproducible-builds.org/debian/rb-pkg/experimental/arm64/seqan2.html Starting cleanup. /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.rbuild.log: 90.8% -- replaced with /var/lib/jenkins/userContent/reproducible/debian/rbuild/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.rbuild.log.gz [2025-11-01 15:29:58] INFO: Starting at 2025-11-01 15:29:58.173137 [2025-11-01 15:29:58] INFO: Generating the pages of 1 package(s) [2025-11-01 15:29:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/unstable/arm64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/unstable/arm64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/forky/arm64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/forky/arm64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:58] CRITICAL: buildinfo not detected at /var/lib/jenkins/userContent/reproducible/debian/buildinfo/trixie/amd64/seqan2_2.4.0+dfsg-16_amd64.buildinfo [2025-11-01 15:29:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/trixie/amd64/seqan2_2.4.0+dfsg-16.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/trixie/amd64/seqan2_2.4.0+dfsg-16.diff.gz is missing [2025-11-01 15:29:58] ERROR: Either /var/lib/jenkins/userContent/reproducible/debian/logs/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.build2.log.gz or /var/lib/jenkins/userContent/reproducible/debian/logdiffs/experimental/arm64/seqan2_2.5.0~rc3+dfsg-1.diff.gz is missing [2025-11-01 15:29:58] INFO: Finished at 2025-11-01 15:29:58.499787, took: 0:00:00.326653 All cleanup done. Sat Nov 1 15:29:58 UTC 2025 - total duration: 0h 26m 36s. Sat Nov 1 15:29:58 UTC 2025 - reproducible_build.sh stopped running as /tmp/jenkins-script-kIY0GE4T, removing. Finished with result: success Main processes terminated with: code=exited, status=0/SUCCESS Service runtime: 26min 36.703s CPU time consumed: 2.344s Memory peak: 45.3M (swap: 0B)